Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0732140 | XP_003615182.2 | 90.826 | 218 | 19 | 1 | 1 | 218 | 10 | 226 | 9.10e-144 | 410 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0732140 | G7KAI6 | 90.826 | 218 | 19 | 1 | 1 | 218 | 10 | 226 | 4.35e-144 | 410 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0732140 | Msa1061840 | 0.800441 | 1.439273e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0732140 | MtrunA17_Chr5g0426731 | 90.826 | 218 | 19 | 1 | 1 | 218 | 10 | 226 | 8.37e-148 | 410 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 40 sgRNAs with CRISPR-Local
Find 178 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAGAAGTTATGTTGGATTT+TGG | 0.141987 | 5_1:-44127481 | None:intergenic |
| CTAATGCGTCTTCTGCATTT+TGG | 0.166791 | 5_1:-44129013 | None:intergenic |
| TGCTTAACCGTAGGGATATT+TGG | 0.176759 | 5_1:+44127402 | Msa0732140:CDS |
| CATTCTCTTGCAGGAATTCT+TGG | 0.182442 | 5_1:+44127788 | Msa0732140:intron |
| TGACTTGCAGGTGGAAAATA+TGG | 0.303651 | 5_1:+44130117 | Msa0732140:intron |
| AATTTCGTATTGTTTGTTCT+TGG | 0.307315 | 5_1:-44130265 | None:intergenic |
| CCTTTATTACTAGAGGGAAA+TGG | 0.337371 | 5_1:+44127842 | Msa0732140:CDS |
| TGCAGGAATTCTTGGATCCT+TGG | 0.339342 | 5_1:+44127796 | Msa0732140:intron |
| CTTTATTACTAGAGGGAAAT+GGG | 0.372544 | 5_1:+44127843 | Msa0732140:CDS |
| CCATTTCCCTCTAGTAATAA+AGG | 0.386414 | 5_1:-44127842 | None:intergenic |
| AGTAATAAAGGATAGAAGTA+TGG | 0.400489 | 5_1:-44127830 | None:intergenic |
| ACCAAAGTGGGTGCTTCTCT+TGG | 0.426431 | 5_1:-44127597 | None:intergenic |
| AACAAGAATGTCATATGGTC+TGG | 0.436984 | 5_1:-44130242 | None:intergenic |
| GAAAGATGCACATAAAATCT+TGG | 0.450621 | 5_1:+44127553 | Msa0732140:CDS |
| TGGAATTGAATCTAGGATGA+TGG | 0.459043 | 5_1:-44127461 | None:intergenic |
| TGCAGAAGACGCATTAGAAA+AGG | 0.473819 | 5_1:+44129019 | Msa0732140:CDS |
| GGCTGAGAGGGTGGACAAGA+TGG | 0.501348 | 5_1:+44128899 | Msa0732140:CDS |
| GGAAAATATGGAAAAGGAGA+TGG | 0.505305 | 5_1:+44130129 | Msa0732140:CDS |
| CTTCTATCCTTTATTACTAG+AGG | 0.509790 | 5_1:+44127835 | Msa0732140:CDS |
| GCAGGTGGAAAATATGGAAA+AGG | 0.514511 | 5_1:+44130123 | Msa0732140:intron |
| CTTGGAACAAGAATGTCATA+TGG | 0.522358 | 5_1:-44130247 | None:intergenic |
| TTCTATCCTTTATTACTAGA+GGG | 0.524984 | 5_1:+44127836 | Msa0732140:CDS |
| ACCAAGAGAAGCACCCACTT+TGG | 0.525244 | 5_1:+44127596 | Msa0732140:CDS |
| AGCAAATATTGTGGAAGAAG+TGG | 0.537253 | 5_1:+44128878 | Msa0732140:CDS |
| ATGTCATATGGTCTGGAAAG+TGG | 0.546792 | 5_1:-44130235 | None:intergenic |
| ACGAAAACGATCAACCAAAG+TGG | 0.548858 | 5_1:-44127610 | None:intergenic |
| AAGTCAACTTGCTTAACCGT+AGG | 0.575431 | 5_1:+44127393 | Msa0732140:CDS |
| TGTGGAAGAAGTGGCTGAGA+GGG | 0.582366 | 5_1:+44128887 | Msa0732140:CDS |
| AGTCAACTTGCTTAACCGTA+GGG | 0.583971 | 5_1:+44127394 | Msa0732140:CDS |
| TTACCTTTGAGTAGTAGCAA+AGG | 0.598762 | 5_1:-44127868 | None:intergenic |
| CGAAAACGATCAACCAAAGT+GGG | 0.602360 | 5_1:-44127609 | None:intergenic |
| GTATGGCGAATACTGTTCCA+AGG | 0.623011 | 5_1:-44127813 | None:intergenic |
| TTTATCTTTAGATTCTGTAG+GGG | 0.635601 | 5_1:-44130197 | None:intergenic |
| TTTATTACTAGAGGGAAATG+GGG | 0.641226 | 5_1:+44127844 | Msa0732140:CDS |
| GGACCTTTGCTACTACTCAA+AGG | 0.641821 | 5_1:+44127865 | Msa0732140:CDS |
| GGAAGAAGTGGCTGAGAGGG+TGG | 0.645574 | 5_1:+44128890 | Msa0732140:CDS |
| TCTAGTACCAAATATCCCTA+CGG | 0.646824 | 5_1:-44127409 | None:intergenic |
| AGAACAAGCAGCAAATATTG+TGG | 0.648366 | 5_1:+44128869 | Msa0732140:CDS |
| ACTGCAAAGAATCTTCCCAA+AGG | 0.652825 | 5_1:+44128930 | Msa0732140:CDS |
| TTGTGGAAGAAGTGGCTGAG+AGG | 0.677040 | 5_1:+44128886 | Msa0732140:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAAAATTATTTTTTTTTGG+AGG | - | chr5_1:44127662-44127681 | None:intergenic | 10.0% |
| !! | AAAAAAAAAAACAAGTTTAT+TGG | + | chr5_1:44128341-44128360 | Msa0732140:intron | 10.0% |
| !!! | TATAACATTTTTAAGAATAT+GGG | + | chr5_1:44130011-44130030 | Msa0732140:intron | 10.0% |
| !! | AAAATCAGATTAAATCAAAA+GGG | - | chr5_1:44127703-44127722 | None:intergenic | 15.0% |
| !! | TCATAAAAAAACAAATTGAT+GGG | - | chr5_1:44128008-44128027 | None:intergenic | 15.0% |
| !! | ATCATAAAAAAACAAATTGA+TGG | - | chr5_1:44128009-44128028 | None:intergenic | 15.0% |
| !!! | ATCAATTTGTTTTTTTATGA+TGG | + | chr5_1:44128008-44128027 | Msa0732140:intron | 15.0% |
| !! | ATGGAATATATATAATATCA+AGG | - | chr5_1:44128309-44128328 | None:intergenic | 15.0% |
| !!! | TTTTTTTGAAGAAATCAAAA+TGG | - | chr5_1:44128328-44128347 | None:intergenic | 15.0% |
| !!! | AATAAATTATCCACAATTTT+TGG | - | chr5_1:44128670-44128689 | None:intergenic | 15.0% |
| !!! | TATTTATTTTTGAAGAATTG+TGG | - | chr5_1:44128784-44128803 | None:intergenic | 15.0% |
| !!! | AGTCTCTTTATTTAAAATAA+AGG | - | chr5_1:44129255-44129274 | None:intergenic | 15.0% |
| !! | TTTATATTATATCCAAAATG+TGG | - | chr5_1:44129423-44129442 | None:intergenic | 15.0% |
| !!! | CTATAACATTTTTAAGAATA+TGG | + | chr5_1:44130010-44130029 | Msa0732140:intron | 15.0% |
| !!! | ATAACATTTTTAAGAATATG+GGG | + | chr5_1:44130012-44130031 | Msa0732140:intron | 15.0% |
| !! | AAATCAGATTAAATCAAAAG+GGG | - | chr5_1:44127702-44127721 | None:intergenic | 20.0% |
| !! | CAAAATCAGATTAAATCAAA+AGG | - | chr5_1:44127704-44127723 | None:intergenic | 20.0% |
| !! | TGGTTGAAAAATAAGTTTAA+AGG | + | chr5_1:44128028-44128047 | Msa0732140:intron | 20.0% |
| !!! | TCTTTTTGTCTTAAAAGAAA+AGG | + | chr5_1:44128517-44128536 | Msa0732140:intron | 20.0% |
| !! | ACTTGCATCAAATTAAAATA+TGG | - | chr5_1:44128560-44128579 | None:intergenic | 20.0% |
| !! | AATTAATCGAATAAGTAAAG+TGG | - | chr5_1:44128739-44128758 | None:intergenic | 20.0% |
| !! | ACTTATTCGATTAATTTCTT+TGG | + | chr5_1:44128743-44128762 | Msa0732140:intron | 20.0% |
| !!! | TTATTTAAAGTTTCCACTTT+TGG | - | chr5_1:44129125-44129144 | None:intergenic | 20.0% |
| !! | CTATTATATTTGACTCTTAA+CGG | + | chr5_1:44129202-44129221 | Msa0732140:intron | 20.0% |
| !! | AAAATAAAGGAAATGTTAAC+CGG | - | chr5_1:44129242-44129261 | None:intergenic | 20.0% |
| !!! | ACATTTTCAATACATCTTTA+AGG | + | chr5_1:44129814-44129833 | Msa0732140:intron | 20.0% |
| !!! | CATTTTCAATACATCTTTAA+GGG | + | chr5_1:44129815-44129834 | Msa0732140:intron | 20.0% |
| !!! | TTTTATCTTTAGATTCTGTA+GGG | - | chr5_1:44130201-44130220 | None:intergenic | 20.0% |
| !!! | TTTTTATCTTTAGATTCTGT+AGG | - | chr5_1:44130202-44130221 | None:intergenic | 20.0% |
| !! | TTTATGTGCATCTTTCTTTT+GGG | - | chr5_1:44127549-44127568 | None:intergenic | 25.0% |
| !! | TTTTATGTGCATCTTTCTTT+TGG | - | chr5_1:44127550-44127569 | None:intergenic | 25.0% |
| ! | AGTAATAAAGGATAGAAGTA+TGG | - | chr5_1:44127833-44127852 | None:intergenic | 25.0% |
| ! | TTCTATCCTTTATTACTAGA+GGG | + | chr5_1:44127836-44127855 | Msa0732140:CDS | 25.0% |
| ! | TCACCATTCATTGAAATTAT+CGG | - | chr5_1:44128057-44128076 | None:intergenic | 25.0% |
| !!! | TAGTCTTTGTTGATGATTTT+TGG | + | chr5_1:44128110-44128129 | Msa0732140:intron | 25.0% |
| ! | TTACATAATTACAAAGTCAC+AGG | - | chr5_1:44128237-44128256 | None:intergenic | 25.0% |
| ! | ATACCTTGTACTAAAAAAAG+AGG | + | chr5_1:44128636-44128655 | Msa0732140:intron | 25.0% |
| !!! | AAATTATCCACAATTTTTGG+AGG | - | chr5_1:44128667-44128686 | None:intergenic | 25.0% |
| ! | TGATACATACTACCAATTAT+TGG | + | chr5_1:44129060-44129079 | Msa0732140:intron | 25.0% |
| ! | GATACATACTACCAATTATT+GGG | + | chr5_1:44129061-44129080 | Msa0732140:intron | 25.0% |
| ! | AAACAAAATTTATTCGTCCA+TGG | + | chr5_1:44129291-44129310 | Msa0732140:intron | 25.0% |
| ! | AACAAAATTTATTCGTCCAT+GGG | + | chr5_1:44129292-44129311 | Msa0732140:intron | 25.0% |
| !!! | ATCTTATTTTCTGCTTAGTT+TGG | + | chr5_1:44129366-44129385 | Msa0732140:intron | 25.0% |
| ! | ATAAAGAGAAATTCTTGTGT+AGG | + | chr5_1:44129438-44129457 | Msa0732140:intron | 25.0% |
| ! | TGTTTGTAAGAATGATAGTT+AGG | - | chr5_1:44129470-44129489 | None:intergenic | 25.0% |
| !!! | TTGTTTCTTTTAACCATGAT+TGG | + | chr5_1:44129516-44129535 | Msa0732140:intron | 25.0% |
| ! | TGAATACTAACTGCAAATAA+TGG | + | chr5_1:44129545-44129564 | Msa0732140:intron | 25.0% |
| ! | TATTAGAGAAATTCTTGTGT+AGG | - | chr5_1:44129694-44129713 | None:intergenic | 25.0% |
| ! | TACTACGATGTTTGAAAATT+AGG | + | chr5_1:44129764-44129783 | Msa0732140:intron | 25.0% |
| !!! | TATCCATTGATGGATTATTT+CGG | + | chr5_1:44129940-44129959 | Msa0732140:intron | 25.0% |
| !!! | TTTTTAAGAATATGGGGTTA+TGG | + | chr5_1:44130018-44130037 | Msa0732140:intron | 25.0% |
| ! | ATCACTCTAATAAAACTAGT+TGG | - | chr5_1:44130084-44130103 | None:intergenic | 25.0% |
| ! | TTTATCTTTAGATTCTGTAG+GGG | - | chr5_1:44130200-44130219 | None:intergenic | 25.0% |
| !!! | TGGATTTTGGAATTGAATCT+AGG | - | chr5_1:44127471-44127490 | None:intergenic | 30.0% |
| ! | AGAGAAGTTATGTTGGATTT+TGG | - | chr5_1:44127484-44127503 | None:intergenic | 30.0% |
| GTGAAAAAGAGAAGTTATGT+TGG | - | chr5_1:44127491-44127510 | None:intergenic | 30.0% | |
| ! | GTTTTTGAACACTAAATCCA+TGG | - | chr5_1:44127521-44127540 | None:intergenic | 30.0% |
| ! | TTATGTGCATCTTTCTTTTG+GGG | - | chr5_1:44127548-44127567 | None:intergenic | 30.0% |
| GAAAGATGCACATAAAATCT+TGG | + | chr5_1:44127553-44127572 | Msa0732140:CDS | 30.0% | |
| CTTCTATCCTTTATTACTAG+AGG | + | chr5_1:44127835-44127854 | Msa0732140:CDS | 30.0% | |
| CTTTATTACTAGAGGGAAAT+GGG | + | chr5_1:44127843-44127862 | Msa0732140:CDS | 30.0% | |
| TTTATTACTAGAGGGAAATG+GGG | + | chr5_1:44127844-44127863 | Msa0732140:CDS | 30.0% | |
| TGATTGTGTGATTATGATAG+TGG | - | chr5_1:44127917-44127936 | None:intergenic | 30.0% | |
| CTTCCGATAATTTCAATGAA+TGG | + | chr5_1:44128051-44128070 | Msa0732140:intron | 30.0% | |
| !!! | GATGATTTTTGGTTGTTTAG+CGG | + | chr5_1:44128121-44128140 | Msa0732140:intron | 30.0% |
| AATTATGTAAACGCAGACTA+TGG | + | chr5_1:44128247-44128266 | Msa0732140:intron | 30.0% | |
| ATTATGTAAACGCAGACTAT+GGG | + | chr5_1:44128248-44128267 | Msa0732140:intron | 30.0% | |
| !!! | TCACCTCTTTTTTTAGTACA+AGG | - | chr5_1:44128642-44128661 | None:intergenic | 30.0% |
| AATTATTGGGTCATGTTAAC+CGG | + | chr5_1:44129074-44129093 | Msa0732140:intron | 30.0% | |
| ! | ATTTTGCATTGAAAGTTGTG+CGG | - | chr5_1:44129181-44129200 | None:intergenic | 30.0% |
| AAAACATTCCTAAAAACCCA+TGG | - | chr5_1:44129311-44129330 | None:intergenic | 30.0% | |
| ! | TTTCTTTTAACCATGATTGG+TGG | + | chr5_1:44129519-44129538 | Msa0732140:intron | 30.0% |
| GATTCTTTGATATCCATTGA+TGG | + | chr5_1:44129930-44129949 | Msa0732140:intron | 30.0% | |
| AAACCGAAATAATCCATCAA+TGG | - | chr5_1:44129946-44129965 | None:intergenic | 30.0% | |
| !! | TTGATGGATTATTTCGGTTT+AGG | + | chr5_1:44129946-44129965 | Msa0732140:intron | 30.0% |
| TAATCTGTAGTTTGGTTAGA+AGG | + | chr5_1:44130041-44130060 | Msa0732140:intron | 30.0% | |
| !!! | AGTTATTTTGTTTGACTTGC+AGG | + | chr5_1:44130105-44130124 | Msa0732140:intron | 30.0% |
| !! | AAGTTTTTCATGATGATGAG+TGG | - | chr5_1:44130173-44130192 | None:intergenic | 30.0% |
| TCTAGTACCAAATATCCCTA+CGG | - | chr5_1:44127412-44127431 | None:intergenic | 35.0% | |
| ! | TGGAATTGAATCTAGGATGA+TGG | - | chr5_1:44127464-44127483 | None:intergenic | 35.0% |
| !! | TCTTTTTCACAACACAACCA+TGG | + | chr5_1:44127501-44127520 | Msa0732140:CDS | 35.0% |
| ! | TTGATCGTTTTCGTGATCAT+TGG | + | chr5_1:44127619-44127638 | Msa0732140:CDS | 35.0% |
| GAAAAAAGACATTCTCTTGC+AGG | + | chr5_1:44127779-44127798 | Msa0732140:intron | 35.0% | |
| CCATTTCCCTCTAGTAATAA+AGG | - | chr5_1:44127845-44127864 | None:intergenic | 35.0% | |
| CCTTTATTACTAGAGGGAAA+TGG | + | chr5_1:44127842-44127861 | Msa0732140:CDS | 35.0% | |
| TTACCTTTGAGTAGTAGCAA+AGG | - | chr5_1:44127871-44127890 | None:intergenic | 35.0% | |
| !! | GTGATTATGATAGTGGTAAG+TGG | - | chr5_1:44127910-44127929 | None:intergenic | 35.0% |
| TCTCTCGCTAATTTACAATG+CGG | + | chr5_1:44127938-44127957 | Msa0732140:intron | 35.0% | |
| TAATTTACAATGCGGCGTTA+AGG | + | chr5_1:44127946-44127965 | Msa0732140:intron | 35.0% | |
| !!! | TAGCGGTTTCCTTTTTTGTT+TGG | + | chr5_1:44128138-44128157 | Msa0732140:intron | 35.0% |
| !! | TATTGGTTCTATAGCTGTTG+TGG | + | chr5_1:44128358-44128377 | Msa0732140:intron | 35.0% |
| !! | ATTGGTTCTATAGCTGTTGT+GGG | + | chr5_1:44128359-44128378 | Msa0732140:intron | 35.0% |
| TGCTATTGAGTGCAAAACAT+GGG | - | chr5_1:44128409-44128428 | None:intergenic | 35.0% | |
| ! | TTGCTATTGAGTGCAAAACA+TGG | - | chr5_1:44128410-44128429 | None:intergenic | 35.0% |
| GCACTCAATAGCAAATCTAA+TGG | + | chr5_1:44128416-44128435 | Msa0732140:intron | 35.0% | |
| AATGTAACGTGAATCAGCTA+TGG | - | chr5_1:44128442-44128461 | None:intergenic | 35.0% | |
| AGAACAAGCAGCAAATATTG+TGG | + | chr5_1:44128869-44128888 | Msa0732140:CDS | 35.0% | |
| AGCAAATATTGTGGAAGAAG+TGG | + | chr5_1:44128878-44128897 | Msa0732140:CDS | 35.0% | |
| ! | TAATGCGTCTTCTGCATTTT+GGG | - | chr5_1:44129015-44129034 | None:intergenic | 35.0% |
| GGTTAACATGACCCAATAAT+TGG | - | chr5_1:44129075-44129094 | None:intergenic | 35.0% | |
| ! | TTATTCGTCCATGGGTTTTT+AGG | + | chr5_1:44129300-44129319 | Msa0732140:intron | 35.0% |
| TGTGATATGTCTTTGTCCAT+TGG | + | chr5_1:44129393-44129412 | Msa0732140:intron | 35.0% | |
| CTTGTGATATGCTTGTTCAT+TGG | + | chr5_1:44129720-44129739 | Msa0732140:intron | 35.0% | |
| ! | TTCATTGGTTGTCTAGAGTT+TGG | + | chr5_1:44129735-44129754 | Msa0732140:intron | 35.0% |
| ! | TCATTGGTTGTCTAGAGTTT+GGG | + | chr5_1:44129736-44129755 | Msa0732140:intron | 35.0% |
| !! | TTTCGGTTTAGGATTAGCTA+AGG | + | chr5_1:44129957-44129976 | Msa0732140:intron | 35.0% |
| CGTCAGGAAAAGAAAATGAT+TGG | + | chr5_1:44129983-44130002 | Msa0732140:intron | 35.0% | |
| GGTTATGGTAATCTGTAGTT+TGG | + | chr5_1:44130033-44130052 | Msa0732140:intron | 35.0% | |
| !!! | TATTTTGTTTGACTTGCAGG+TGG | + | chr5_1:44130108-44130127 | Msa0732140:intron | 35.0% |
| GGAAAATATGGAAAAGGAGA+TGG | + | chr5_1:44130129-44130148 | Msa0732140:CDS | 35.0% | |
| AACAAGAATGTCATATGGTC+TGG | - | chr5_1:44130245-44130264 | None:intergenic | 35.0% | |
| CTTGGAACAAGAATGTCATA+TGG | - | chr5_1:44130250-44130269 | None:intergenic | 35.0% | |
| ! | AAGTCAACTTGCTTAACCGT+AGG | + | chr5_1:44127393-44127412 | Msa0732140:CDS | 40.0% |
| ! | AGTCAACTTGCTTAACCGTA+GGG | + | chr5_1:44127394-44127413 | Msa0732140:CDS | 40.0% |
| TGCTTAACCGTAGGGATATT+TGG | + | chr5_1:44127402-44127421 | Msa0732140:CDS | 40.0% | |
| CGAAAACGATCAACCAAAGT+GGG | - | chr5_1:44127612-44127631 | None:intergenic | 40.0% | |
| ACGAAAACGATCAACCAAAG+TGG | - | chr5_1:44127613-44127632 | None:intergenic | 40.0% | |
| CATTCTCTTGCAGGAATTCT+TGG | + | chr5_1:44127788-44127807 | Msa0732140:intron | 40.0% | |
| CATCACGGACCAAACAAAAA+AGG | - | chr5_1:44128150-44128169 | None:intergenic | 40.0% | |
| !!! | CTTTTTTGTTTGGTCCGTGA+TGG | + | chr5_1:44128148-44128167 | Msa0732140:intron | 40.0% |
| AGAAAACACCATCACCATCA+CGG | - | chr5_1:44128165-44128184 | None:intergenic | 40.0% | |
| AAGGAATTTCCTCTTGCACA+AGG | - | chr5_1:44128290-44128309 | None:intergenic | 40.0% | |
| TATTGAGTGCAAAACATGGG+TGG | - | chr5_1:44128406-44128425 | None:intergenic | 40.0% | |
| !! | CAAGAGCGATGCTATTTCAA+GGG | - | chr5_1:44128480-44128499 | None:intergenic | 40.0% |
| !! | ACAAGAGCGATGCTATTTCA+AGG | - | chr5_1:44128481-44128500 | None:intergenic | 40.0% |
| GGTGATACCTCCAAAAATTG+TGG | + | chr5_1:44128657-44128676 | Msa0732140:intron | 40.0% | |
| ! | AGCCACACTAGTCACTTTAT+TGG | + | chr5_1:44128708-44128727 | Msa0732140:intron | 40.0% |
| CACCAATAAAGTGACTAGTG+TGG | - | chr5_1:44128713-44128732 | None:intergenic | 40.0% | |
| ! | CACACTAGTCACTTTATTGG+TGG | + | chr5_1:44128711-44128730 | Msa0732140:intron | 40.0% |
| ACTGCAAAGAATCTTCCCAA+AGG | + | chr5_1:44128930-44128949 | Msa0732140:CDS | 40.0% | |
| !! | ACAACTCGTCGTTTTCCTTT+GGG | - | chr5_1:44128948-44128967 | None:intergenic | 40.0% |
| !! | AACAACTCGTCGTTTTCCTT+TGG | - | chr5_1:44128949-44128968 | None:intergenic | 40.0% |
| ! | CTAATGCGTCTTCTGCATTT+TGG | - | chr5_1:44129016-44129035 | None:intergenic | 40.0% |
| TGCAGAAGACGCATTAGAAA+AGG | + | chr5_1:44129019-44129038 | Msa0732140:CDS | 40.0% | |
| GATATGTCTTTGTCCATTGG+TGG | + | chr5_1:44129396-44129415 | Msa0732140:intron | 40.0% | |
| ! | CTTTTAACCATGATTGGTGG+TGG | + | chr5_1:44129522-44129541 | Msa0732140:intron | 40.0% |
| ! | TGACTTGCAGGTGGAAAATA+TGG | + | chr5_1:44130117-44130136 | Msa0732140:intron | 40.0% |
| GCAGGTGGAAAATATGGAAA+AGG | + | chr5_1:44130123-44130142 | Msa0732140:intron | 40.0% | |
| ATGTCATATGGTCTGGAAAG+TGG | - | chr5_1:44130238-44130257 | None:intergenic | 40.0% | |
| TGCAGGAATTCTTGGATCCT+TGG | + | chr5_1:44127796-44127815 | Msa0732140:intron | 45.0% | |
| GTATGGCGAATACTGTTCCA+AGG | - | chr5_1:44127816-44127835 | None:intergenic | 45.0% | |
| GGACCTTTGCTACTACTCAA+AGG | + | chr5_1:44127865-44127884 | Msa0732140:CDS | 45.0% | |
| TTGCACAAGGTGCGCAAAAA+AGG | - | chr5_1:44128277-44128296 | None:intergenic | 45.0% | |
| GGAGTGGATGTAAAGCTGTA+AGG | - | chr5_1:44128385-44128404 | None:intergenic | 45.0% | |
| CTGGTTAAGGAAGCCAAAAG+TGG | + | chr5_1:44129109-44129128 | Msa0732140:intron | 45.0% | |
| AAATGTTAACCGGTGCTCCT+GGG | - | chr5_1:44129232-44129251 | None:intergenic | 45.0% | |
| !! | TCCATTGGTGGTCCACATTT+TGG | + | chr5_1:44129408-44129427 | Msa0732140:intron | 45.0% |
| TCCAAAATGTGGACCACCAA+TGG | - | chr5_1:44129412-44129431 | None:intergenic | 45.0% | |
| GTATTCACCACCACCAATCA+TGG | - | chr5_1:44129532-44129551 | None:intergenic | 45.0% | |
| GCAAATAATGGTCGAGAGAG+AGG | + | chr5_1:44129557-44129576 | Msa0732140:intron | 45.0% | |
| AATAATGGTCGAGAGAGAGG+AGG | + | chr5_1:44129560-44129579 | Msa0732140:intron | 45.0% | |
| !!! | TACATAAAATTATTTTTTTT+TGG | - | chr5_1:44127665-44127684 | None:intergenic | 5.0% |
| !!! | TTTTTCATTAAATTAAAATT+TGG | + | chr5_1:44128611-44128630 | Msa0732140:intron | 5.0% |
| !!! | TGTTTTATTTTAAAATAATT+TGG | - | chr5_1:44129617-44129636 | None:intergenic | 5.0% |
| !! | ACCAAGAGAAGCACCCACTT+TGG | + | chr5_1:44127596-44127615 | Msa0732140:CDS | 50.0% |
| ACCAAAGTGGGTGCTTCTCT+TGG | - | chr5_1:44127600-44127619 | None:intergenic | 50.0% | |
| ! | TGTTTGGTCCGTGATGGTGA+TGG | + | chr5_1:44128154-44128173 | Msa0732140:intron | 50.0% |
| ! | TTTTGCGCACCTTGTGCAAG+AGG | + | chr5_1:44128278-44128297 | Msa0732140:intron | 50.0% |
| AGTGCAAAACATGGGTGGAG+TGG | - | chr5_1:44128401-44128420 | None:intergenic | 50.0% | |
| TTGTGGAAGAAGTGGCTGAG+AGG | + | chr5_1:44128886-44128905 | Msa0732140:CDS | 50.0% | |
| TGTGGAAGAAGTGGCTGAGA+GGG | + | chr5_1:44128887-44128906 | Msa0732140:CDS | 50.0% | |
| AATGTTAACCGGTGCTCCTG+GGG | - | chr5_1:44129231-44129250 | None:intergenic | 50.0% | |
| GAAATGTTAACCGGTGCTCC+TGG | - | chr5_1:44129233-44129252 | None:intergenic | 50.0% | |
| !! | GGATTAGCTAAGGTTGCGTC+AGG | + | chr5_1:44129967-44129986 | Msa0732140:intron | 50.0% |
| ! | TGACTCTTAACGGATGCCCC+AGG | + | chr5_1:44129212-44129231 | Msa0732140:intron | 55.0% |
| GGAAGAAGTGGCTGAGAGGG+TGG | + | chr5_1:44128890-44128909 | Msa0732140:CDS | 60.0% | |
| GGCTGAGAGGGTGGACAAGA+TGG | + | chr5_1:44128899-44128918 | Msa0732140:CDS | 60.0% | |
| GGTCATGTTAACCGGTGCCC+CGG | + | chr5_1:44129082-44129101 | Msa0732140:intron | 60.0% | |
| GTCATGTTAACCGGTGCCCC+GGG | + | chr5_1:44129083-44129102 | Msa0732140:intron | 60.0% | |
| TCATGTTAACCGGTGCCCCG+GGG | + | chr5_1:44129084-44129103 | Msa0732140:intron | 60.0% | |
| CTTCCTTAACCAGTGCCCCG+GGG | - | chr5_1:44129102-44129121 | None:intergenic | 60.0% | |
| GCTTCCTTAACCAGTGCCCC+GGG | - | chr5_1:44129103-44129122 | None:intergenic | 60.0% | |
| GGCTTCCTTAACCAGTGCCC+CGG | - | chr5_1:44129104-44129123 | None:intergenic | 60.0% | |
| TGGTCGAGAGAGAGGAGGAG+CGG | + | chr5_1:44129565-44129584 | Msa0732140:intron | 60.0% | |
| ! | AACGGATGCCCCAGGAGCAC+CGG | + | chr5_1:44129220-44129239 | Msa0732140:intron | 65.0% |
| TAACCAGTGCCCCGGGGCAC+CGG | - | chr5_1:44129096-44129115 | None:intergenic | 70.0% | |
| !! | GTGCCCCGGGGCACTGGTTA+AGG | + | chr5_1:44129096-44129115 | Msa0732140:intron | 70.0% |
| TAACCGGTGCCCCGGGGCAC+TGG | + | chr5_1:44129090-44129109 | Msa0732140:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 44127369 | 44130278 | 44127369 | ID=Msa0732140;Name=Msa0732140 |
| chr5_1 | mRNA | 44127369 | 44130278 | 44127369 | ID=Msa0732140-mRNA-1;Parent=Msa0732140;Name=Msa0732140-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|0.66|0.5|1|1|1|4|53|218 |
| chr5_1 | exon | 44127369 | 44127640 | 44127369 | ID=Msa0732140-mRNA-1:exon:12535;Parent=Msa0732140-mRNA-1 |
| chr5_1 | exon | 44127801 | 44127886 | 44127801 | ID=Msa0732140-mRNA-1:exon:12536;Parent=Msa0732140-mRNA-1 |
| chr5_1 | exon | 44128841 | 44129040 | 44128841 | ID=Msa0732140-mRNA-1:exon:12537;Parent=Msa0732140-mRNA-1 |
| chr5_1 | exon | 44130127 | 44130278 | 44130127 | ID=Msa0732140-mRNA-1:exon:12538;Parent=Msa0732140-mRNA-1 |
| chr5_1 | CDS | 44127369 | 44127640 | 44127369 | ID=Msa0732140-mRNA-1:cds;Parent=Msa0732140-mRNA-1 |
| chr5_1 | CDS | 44127801 | 44127886 | 44127801 | ID=Msa0732140-mRNA-1:cds;Parent=Msa0732140-mRNA-1 |
| chr5_1 | CDS | 44128841 | 44129040 | 44128841 | ID=Msa0732140-mRNA-1:cds;Parent=Msa0732140-mRNA-1 |
| chr5_1 | CDS | 44130127 | 44130225 | 44130127 | ID=Msa0732140-mRNA-1:cds;Parent=Msa0732140-mRNA-1 |
| chr5_1 | three_prime_UTR | 44130226 | 44130278 | 44130226 | ID=Msa0732140-mRNA-1:three_prime_utr;Parent=Msa0732140-mRNA-1 |
| Gene Sequence |
| Protein sequence |
