AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1061840

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1061840 MtrunA17_Chr7g0240991 98.594 569 8 0 4 572 3 571 0.0 1165
Msa1061840 MtrunA17_Chr7g0240971 64.645 577 192 5 1 572 1 570 0.0 739
Msa1061840 MtrunA17_Chr4g0008521 56.491 570 234 9 10 572 10 572 0.0 660
Msa1061840 MtrunA17_Chr5g0437681 46.316 570 281 9 14 572 12 567 0.0 538
Msa1061840 MtrunA17_Chr5g0431581 46.167 574 286 9 5 572 4 560 0.0 535
Msa1061840 MtrunA17_Chr3g0114211 47.028 572 271 12 14 572 18 570 0.0 529
Msa1061840 MtrunA17_Chr7g0238941 45.326 567 292 9 14 572 22 578 2.13e-176 511
Msa1061840 MtrunA17_Chr5g0404361 46.018 565 280 12 12 572 68 611 3.55e-175 509
Msa1061840 MtrunA17_Chr7g0238351 44.732 579 297 11 8 572 12 581 6.69e-173 502
Msa1061840 MtrunA17_Chr7g0237491 44.728 588 292 13 6 572 5 580 2.93e-172 500
Msa1061840 MtrunA17_Chr7g0237441 43.972 564 297 8 19 572 26 580 7.30e-172 499
Msa1061840 MtrunA17_Chr5g0429511 44.425 574 298 9 1 572 4 558 1.13e-171 498
Msa1061840 MtrunA17_Chr4g0005921 44.737 570 294 10 9 572 3 557 7.23e-170 493
Msa1061840 MtrunA17_Chr4g0031901 45.009 551 288 8 13 558 31 571 1.20e-168 491
Msa1061840 MtrunA17_Chr5g0404341 45.035 564 286 11 14 572 22 566 2.15e-168 490
Msa1061840 MtrunA17_Chr7g0238981 43.470 559 298 8 23 572 44 593 3.18e-166 485
Msa1061840 MtrunA17_Chr2g0278811 43.590 585 287 9 21 572 33 607 1.40e-165 484
Msa1061840 MtrunA17_Chr3g0104061 44.384 552 286 11 24 572 23 556 1.65e-165 482
Msa1061840 MtrunA17_Chr5g0436461 45.053 566 286 12 12 572 9 554 2.08e-162 474
Msa1061840 MtrunA17_Chr8g0346581 41.409 582 316 10 1 572 5 571 2.11e-152 449
Msa1061840 MtrunA17_Chr3g0133861 44.118 340 169 11 230 562 5 330 3.49e-81 258
Msa1061840 MtrunA17_Chr8g0382691 29.749 558 317 17 41 563 49 566 1.48e-65 224
Msa1061840 MtrunA17_Chr3g0133871 51.531 196 92 3 12 204 17 212 9.45e-62 203
Msa1061840 MtrunA17_Chr3g0118321 29.655 580 343 19 1 550 1 545 1.28e-60 210
Msa1061840 MtrunA17_Chr3g0118331 27.367 581 351 18 1 550 4 544 9.62e-51 183
Msa1061840 MtrunA17_Chr5g0436431 39.419 241 130 6 290 530 4 228 1.72e-45 160
Msa1061840 MtrunA17_Chr1g0157341 28.704 540 332 20 3 537 6 497 1.70e-41 157
Msa1061840 MtrunA17_Chr3g0143671 29.249 506 299 20 40 537 44 498 3.49e-41 156
Msa1061840 MtrunA17_Chr8g0374261 27.223 551 328 19 12 545 10 504 1.49e-40 154
Msa1061840 MtrunA17_Chr4g0024861 26.962 497 312 16 40 532 41 490 5.15e-39 150
Msa1061840 MtrunA17_Chr8g0374271 26.346 520 333 14 29 545 34 506 1.00e-38 149
Msa1061840 MtrunA17_Chr4g0056511 28.796 573 358 20 12 572 15 549 3.49e-38 148
Msa1061840 MtrunA17_Chr4g0038671 28.169 497 305 19 40 532 44 492 2.55e-37 145
Msa1061840 MtrunA17_Chr2g0322441 26.834 518 310 16 28 532 32 493 2.06e-35 140
Msa1061840 MtrunA17_Chr3g0079321 26.876 573 369 18 13 572 16 551 5.66e-35 139
Msa1061840 MtrunA17_Chr3g0121171 26.902 539 338 17 26 554 1176 1668 2.94e-34 139
Msa1061840 MtrunA17_Chr3g0121171 26.902 539 338 18 26 554 26 518 1.28e-33 137
Msa1061840 MtrunA17_Chr3g0121171 26.531 539 340 17 26 554 601 1093 4.10e-33 135
Msa1061840 MtrunA17_Chr3g0121171 26.294 483 300 17 82 554 1798 2234 3.57e-29 123
Msa1061840 MtrunA17_Chr4g0043261 27.057 547 340 19 11 545 5 504 3.18e-34 136
Msa1061840 MtrunA17_Chr3g0121161 26.716 539 339 17 26 554 66 558 5.00e-34 136
Msa1061840 MtrunA17_Chr3g0121151 26.531 539 340 17 26 554 66 558 3.08e-33 134
Msa1061840 MtrunA17_Chr5g0402831 25.520 529 325 16 28 545 33 503 6.96e-33 132
Msa1061840 MtrunA17_Chr4g0043251 26.902 539 315 23 44 562 45 524 4.44e-32 130
Msa1061840 MtrunA17_Chr4g0075071 26.523 509 299 19 40 532 45 494 3.25e-31 127
Msa1061840 MtrunA17_Chr7g0234061 28.463 527 325 18 32 546 35 521 3.83e-31 128
Msa1061840 MtrunA17_Chr4g0024641 25.721 451 283 18 86 532 11 413 2.81e-25 110
Msa1061840 MtrunA17_Chr3g0118351 28.614 339 191 14 236 550 5 316 2.56e-24 104
Msa1061840 MtrunA17_Chr3g0118341 33.889 180 109 8 1 174 1 176 1.59e-21 93.2
Msa1061840 MtrunA17_Chr1g0197301 26.053 380 212 13 211 572 1 329 1.37e-20 93.2
Msa1061840 MtrunA17_Chr1g0197311 25.000 240 140 7 13 215 7 243 2.60e-16 79.0
Msa1061840 MtrunA17_Chr7g0268321 78.571 42 9 0 116 157 1 42 6.57e-16 72.0
Msa1061840 MtrunA17_Chr4g0075781 32.847 137 78 4 150 283 24 149 8.19e-13 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1061840 AT5G01050.1 54.145 567 242 7 12 572 14 568 0.0 625
Msa1061840 AT5G01040.1 53.191 564 250 5 12 572 14 566 0.0 624
Msa1061840 AT3G09220.1 54.628 551 233 9 11 555 11 550 0.0 608
Msa1061840 AT2G40370.1 44.198 586 302 9 2 572 5 580 0.0 530
Msa1061840 AT2G30210.1 46.303 568 275 11 18 572 20 570 0.0 528
Msa1061840 AT5G05390.1 46.032 567 286 9 12 572 13 565 0.0 525
Msa1061840 AT5G07130.1 44.828 580 292 13 8 572 3 569 1.31e-175 509
Msa1061840 AT2G29130.1 44.828 580 295 11 9 572 3 573 1.82e-175 508
Msa1061840 AT3G09220.2 54.644 463 193 9 99 555 2 453 9.27e-174 500
Msa1061840 AT5G60020.1 43.952 587 304 11 1 572 1 577 4.55e-171 498
Msa1061840 AT5G03260.1 46.570 554 275 12 22 572 22 557 1.06e-170 496
Msa1061840 AT5G60020.3 45.389 553 278 10 35 572 2 545 2.01e-169 492
Msa1061840 AT2G38080.1 44.092 567 292 12 14 572 9 558 1.78e-167 488
Msa1061840 AT5G58910.2 43.972 564 302 9 12 572 15 567 1.17e-166 486
Msa1061840 AT5G58910.3 44.326 564 299 10 12 572 15 566 1.37e-166 486
Msa1061840 AT5G09360.1 43.110 566 300 10 12 572 21 569 2.31e-166 485
Msa1061840 AT1G18140.1 44.386 570 291 12 19 572 22 581 7.68e-164 479
Msa1061840 AT5G01190.1 44.425 574 297 8 1 572 5 558 1.29e-163 478
Msa1061840 AT5G58910.1 44.590 536 277 9 39 572 6 523 7.79e-161 469
Msa1061840 AT5G01190.2 45.369 529 272 7 46 572 31 544 1.21e-156 459
Msa1061840 AT2G46570.1 43.964 555 292 9 23 572 29 569 4.91e-156 459
Msa1061840 AT5G48100.1 43.649 559 291 13 14 562 9 553 2.81e-153 452
Msa1061840 AT5G60020.2 42.936 545 286 11 1 530 1 535 3.54e-150 443
Msa1061840 AT5G07130.2 44.467 497 251 12 88 572 1 484 5.32e-145 427
Msa1061840 AT5G07130.3 44.467 497 251 12 88 572 1 484 5.32e-145 427
Msa1061840 AT2G46570.2 43.636 495 260 9 83 572 4 484 6.15e-134 399
Msa1061840 AT4G39830.1 28.856 603 338 20 13 572 23 577 1.04e-64 222
Msa1061840 AT5G21105.1 30.118 591 340 20 10 563 20 574 1.91e-64 221
Msa1061840 AT5G21100.1 29.255 564 326 19 21 551 19 542 1.39e-62 216
Msa1061840 AT5G21105.3 29.730 555 320 19 10 530 20 538 3.24e-56 198
Msa1061840 AT4G39830.2 28.868 530 287 19 85 572 1 482 4.42e-49 177
Msa1061840 AT4G39830.3 28.872 523 282 19 92 572 6 480 1.70e-47 173
Msa1061840 AT4G39830.4 28.355 529 278 18 85 572 1 469 4.80e-46 169
Msa1061840 AT1G41830.1 28.814 531 319 19 16 537 16 496 6.53e-43 161
Msa1061840 AT1G76160.1 27.758 562 348 19 9 562 6 517 5.34e-42 159
Msa1061840 AT4G37160.1 27.372 548 349 15 28 572 33 534 4.36e-41 156
Msa1061840 AT5G66920.1 27.338 556 337 18 28 572 39 538 2.53e-40 154
Msa1061840 AT5G51480.1 27.273 583 352 18 14 572 16 550 1.01e-39 153
Msa1061840 AT1G21850.1 28.229 542 309 18 37 562 40 517 1.77e-39 152
Msa1061840 AT5G48450.2 27.379 515 322 18 40 546 43 513 4.69e-39 151
Msa1061840 AT5G48450.1 27.379 515 322 18 40 546 43 513 8.83e-39 151
Msa1061840 AT1G21860.1 26.731 520 314 20 37 545 40 503 1.04e-38 149
Msa1061840 AT2G23630.1 27.057 547 349 17 29 572 33 532 2.41e-38 149
Msa1061840 AT2G23630.2 27.057 547 349 17 29 572 38 537 2.74e-38 148
Msa1061840 AT4G12420.1 26.923 546 351 18 2 537 5 512 2.04e-37 146
Msa1061840 AT4G12420.2 26.923 546 351 18 2 537 5 512 2.04e-37 146
Msa1061840 AT4G25240.2 27.461 579 361 18 11 572 14 550 1.05e-36 144
Msa1061840 AT4G25240.1 27.461 579 361 18 11 572 14 550 1.05e-36 144
Msa1061840 AT1G75790.1 27.090 598 342 25 1 572 12 541 2.05e-36 143
Msa1061840 AT4G22010.1 26.740 546 332 17 40 572 40 530 2.33e-36 143
Msa1061840 AT5G21105.2 30.769 364 212 12 209 563 51 383 4.64e-34 134
Msa1061840 AT1G55570.1 27.528 534 320 18 28 545 31 513 1.04e-33 135
Msa1061840 AT4G37160.2 28.182 440 271 13 28 464 33 430 1.12e-32 130
Msa1061840 AT4G28090.1 25.141 533 333 18 18 537 20 499 1.36e-32 132
Msa1061840 AT3G13390.1 25.940 532 331 16 28 545 30 512 1.27e-31 129
Msa1061840 AT4G38420.1 25.502 498 324 16 44 536 48 503 1.45e-30 126
Msa1061840 AT3G13400.2 27.006 511 325 17 28 532 29 497 1.46e-28 120
Msa1061840 AT3G13400.1 27.006 511 325 17 28 532 29 497 1.46e-28 120
Msa1061840 AT1G55560.1 26.019 515 325 19 28 532 28 496 4.42e-28 119
Msa1061840 AT4G38420.3 25.105 478 311 16 44 516 48 483 9.82e-27 114
Msa1061840 AT4G38420.2 29.365 252 164 6 44 291 48 289 2.48e-24 106

Find 124 sgRNAs with CRISPR-Local

Find 220 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCACTTCAATATGAAGATTT+TGG 0.185047 7_2:-52209599 Msa1061840:exon
CAAGTGATTGTTACAGTTAA+TGG 0.188106 7_2:-52208899 Msa1061840:CDS
TGATTTGCCTAAATGTTAAT+TGG 0.249889 7_2:-52206622 Msa1061840:exon
CGATAAACTCAAGTATAATT+TGG 0.260597 7_2:-52206980 Msa1061840:CDS
TATTGAAGTGACCAACTTAT+AGG 0.262580 7_2:+52209611 None:intergenic
TCAATCATAGCATGTATATA+TGG 0.266850 7_2:+52206450 None:intergenic
TACCAATCACCTAATATTAT+TGG 0.268631 7_2:+52208092 None:intergenic
CCTGTACACTTAGCATTTAC+AGG 0.283680 7_2:+52207357 None:intergenic
GGACATTGTGTTATATATTC+AGG 0.298929 7_2:+52208281 None:intergenic
ACAGCATTCATAGTTGAAAA+TGG 0.311293 7_2:-52206681 Msa1061840:CDS
TTCACTATCAACGGCTTTCC+TGG 0.313796 7_2:-52208002 Msa1061840:CDS
GACGATTATATCGGTGGTAT+AGG 0.322464 7_2:+52207716 None:intergenic
TGCTTCACCTTAGTCGATTT+CGG 0.324244 7_2:+52207138 None:intergenic
CCAATGAATTGTTATATTGT+AGG 0.324915 7_2:+52208805 None:intergenic
TATTATTGGTACTTCCTTGT+AGG 0.326514 7_2:+52208106 None:intergenic
AGTGGGACAGGGACCCAATT+AGG 0.336834 7_2:+52207432 None:intergenic
TATATAGCCAATTAACATTT+AGG 0.338710 7_2:+52206615 None:intergenic
TTGCTGTGCCGGTGGGAGGA+TGG 0.341412 7_2:-52206933 Msa1061840:CDS
CATTATCATTCAACCTCGTT+CGG 0.343561 7_2:-52208150 Msa1061840:CDS
AAGGAAGTACCAATAATATT+AGG 0.349483 7_2:-52208101 Msa1061840:CDS
CAAATTATACTTGAGTTTAT+CGG 0.350950 7_2:+52206981 None:intergenic
CTGTAACAATCACTTGTTCA+TGG 0.365502 7_2:+52208906 None:intergenic
TGCTGTGCCGGTGGGAGGAT+GGG 0.368851 7_2:-52206932 Msa1061840:CDS
CCATCCCTGACTTCCAGCTT+TGG 0.378346 7_2:+52208863 None:intergenic
TTCGGTGTAAATGTAACATT+AGG 0.379226 7_2:+52207156 None:intergenic
ATGTGGATGATCATAATCTA+TGG 0.380123 7_2:-52206713 Msa1061840:CDS
TCCTTGTAGGGCTTAGGAAA+TGG 0.399142 7_2:+52208119 None:intergenic
CAGGTCCAAAGCTGGAAGTC+AGG 0.405362 7_2:-52208868 Msa1061840:CDS
ATTATTGGTACTTCCTTGTA+GGG 0.406166 7_2:+52208107 None:intergenic
TTCTTATTTGTCCTATAAGT+TGG 0.410734 7_2:-52209622 Msa1061840:five_prime_UTR
CAATGAATTGTTATATTGTA+GGG 0.414174 7_2:+52208806 None:intergenic
CGAACGAGGTTGAATGATAA+TGG 0.418720 7_2:+52208151 None:intergenic
TCGCAACACGGTTGCTGTGC+CGG 0.420527 7_2:-52206944 Msa1061840:CDS
ACGATTATATCGGTGGTATA+GGG 0.426862 7_2:+52207717 None:intergenic
CTGACTTCCAGCTTTGGACC+TGG 0.430307 7_2:+52208869 None:intergenic
GTTGTACGTGCAACAGTTCA+TGG 0.431433 7_2:-52208176 Msa1061840:CDS
CACAACAAGAAGGAACATTA+TGG 0.433064 7_2:-52208217 Msa1061840:CDS
TACCAATAATATTAGGTGAT+TGG 0.440913 7_2:-52208094 Msa1061840:CDS
GCAACATAACTGGTCTTGTA+GGG 0.442902 7_2:-52207458 Msa1061840:CDS
GGTACTTCCTTGTAGGGCTT+AGG 0.446960 7_2:+52208113 None:intergenic
AGTCATCCCATGCATCTTCA+TGG 0.452974 7_2:-52207054 Msa1061840:CDS
ATATTAGGTGATTGGTATGA+TGG 0.463238 7_2:-52208086 Msa1061840:CDS
GCCATGTAGTATGAACCTTT+TGG 0.463483 7_2:+52207648 None:intergenic
CAATCATAGCATGTATATAT+GGG 0.468397 7_2:+52206451 None:intergenic
GCAACCGTGTTGCGAATTGA+AGG 0.469608 7_2:+52206952 None:intergenic
TACTTGAGTTTATCGGTAGT+AGG 0.471637 7_2:+52206988 None:intergenic
GCTGCATCACCTTATGTTGT+TGG 0.473113 7_2:-52207627 Msa1061840:CDS
CCAACACCTTCAACTTCACT+TGG 0.476302 7_2:-52206657 Msa1061840:CDS
CCTACAATATAACAATTCAT+TGG 0.477224 7_2:-52208805 Msa1061840:intron
GTTGACCATTCGGAACAAAT+AGG 0.478262 7_2:+52207821 None:intergenic
ACATACCAGGATTGTCAGTT+CGG 0.478393 7_2:+52206896 None:intergenic
AAAGACGACGGCACGAGTTG+TGG 0.481369 7_2:+52207578 None:intergenic
TGACTTCCAGCTTTGGACCT+GGG 0.483976 7_2:+52208870 None:intergenic
GTCTGCTGTGAAAAGTATAT+CGG 0.485158 7_2:+52207674 None:intergenic
TGCTGCAATGACGATTATAT+CGG 0.491384 7_2:+52207707 None:intergenic
TGGAAAAGGATATTCCATAA+TGG 0.491498 7_2:-52207277 Msa1061840:CDS
ATTTACACCGAAATCGACTA+AGG 0.491745 7_2:-52207145 Msa1061840:CDS
CCTGTAAATGCTAAGTGTAC+AGG 0.492619 7_2:-52207357 Msa1061840:CDS
AGCAACATAACTGGTCTTGT+AGG 0.494287 7_2:-52207459 Msa1061840:CDS
GATATAATCGTCATTGCAGC+AGG 0.499394 7_2:-52207705 Msa1061840:CDS
CACTTAGCATTTACAGGACA+AGG 0.505158 7_2:+52207363 None:intergenic
ACTGGTTCACCAACAACATA+AGG 0.513560 7_2:+52207618 None:intergenic
TCATCCACTTCAAGTGGGAC+AGG 0.515815 7_2:+52207420 None:intergenic
TGTGGATGATCATAATCTAT+GGG 0.516377 7_2:-52206712 Msa1061840:CDS
ATTATCATTCAACCTCGTTC+GGG 0.518373 7_2:-52208149 Msa1061840:CDS
TTCACAGCAGACCAACCAAA+AGG 0.519262 7_2:-52207663 Msa1061840:CDS
CAACACGGTTGCTGTGCCGG+TGG 0.525329 7_2:-52206941 Msa1061840:CDS
CTGACCATGCACTATACAGC+TGG 0.531509 7_2:+52208309 None:intergenic
TCCATTTCCTAAGCCCTACA+AGG 0.531828 7_2:-52208120 Msa1061840:CDS
ACTTTACCCAGGTCCAAAGC+TGG 0.536979 7_2:-52208876 Msa1061840:CDS
TTCATACCATGAAGATGCAT+GGG 0.538306 7_2:+52207048 None:intergenic
ATTCATACCATGAAGATGCA+TGG 0.538422 7_2:+52207047 None:intergenic
TGAAAAGTATATCGGCACTT+TGG 0.539755 7_2:+52207682 None:intergenic
AGTGGTAATGCTGGCATCAA+AGG 0.541191 7_2:+52207516 None:intergenic
CAAATACAATTCAACGGTGG+AGG 0.551874 7_2:-52207112 Msa1061840:CDS
GAACAATTGAAGAGATCACC+AGG 0.557756 7_2:+52207984 None:intergenic
TAACATTTAGGCAAATCAGC+AGG 0.558427 7_2:+52206627 None:intergenic
GAATTGTCGAAGAGTCCTAC+TGG 0.559246 7_2:+52207600 None:intergenic
AGATTCCGAACTGACAATCC+TGG 0.559455 7_2:-52206901 Msa1061840:intron
TTAGGCAAATCAGCAGGTGG+TGG 0.560545 7_2:+52206633 None:intergenic
GGTCCCTGTCCCACTTGAAG+TGG 0.563821 7_2:-52207424 Msa1061840:CDS
AGGTCCAAAGCTGGAAGTCA+GGG 0.569821 7_2:-52208867 Msa1061840:CDS
TTGTTATGAAGTGGTAATGC+TGG 0.573382 7_2:+52207507 None:intergenic
AACACGGTTGCTGTGCCGGT+GGG 0.573459 7_2:-52206940 Msa1061840:CDS
TATATCGGTGGTATAGGGCT+CGG 0.574475 7_2:+52207722 None:intergenic
AAAGACCTATTTGTTCCGAA+TGG 0.575759 7_2:-52207826 Msa1061840:CDS
CTGTATAGTGCATGGTCAGA+CGG 0.582676 7_2:-52208305 Msa1061840:CDS
TATAAGTTGAAAGTGAAGCA+AGG 0.585314 7_2:-52207849 Msa1061840:CDS
TCTGATGCTTTCACTATCAA+CGG 0.586303 7_2:-52208011 Msa1061840:CDS
ACCAAAAGGTTCATACTACA+TGG 0.591334 7_2:-52207649 Msa1061840:CDS
TATGTATATCACAATTAACA+TGG 0.591646 7_2:-52207394 Msa1061840:CDS
GCTAAGTGTACAGGTCCACT+TGG 0.593627 7_2:-52207348 Msa1061840:CDS
ACGGTTGCTGTGCCGGTGGG+AGG 0.595198 7_2:-52206937 Msa1061840:CDS
CAAATTCACAGTGGTAGCCA+TGG 0.597951 7_2:-52207757 Msa1061840:CDS
TTTAATGTGACACAACAAGA+AGG 0.597981 7_2:-52208227 Msa1061840:CDS
GAATCCTTCAATTCGCAACA+CGG 0.600436 7_2:-52206956 Msa1061840:CDS
ATAGCAGCCCATCCTCCCAC+CGG 0.601570 7_2:+52206925 None:intergenic
TTTGGTGTTATGGCAAACAT+GGG 0.609087 7_2:-52209581 Msa1061840:CDS
CATCCACTTCAAGTGGGACA+GGG 0.612302 7_2:+52207421 None:intergenic
GCAATTCAAATACAATTCAA+CGG 0.613563 7_2:-52207118 Msa1061840:CDS
CCAAGTGAAGTTGAAGGTGT+TGG 0.618280 7_2:+52206657 None:intergenic
TGCAATGACGATTATATCGG+TGG 0.620768 7_2:+52207710 None:intergenic
TATGTTGTTGGTGAACCAGT+AGG 0.621180 7_2:-52207615 Msa1061840:CDS
ATATGTTCATCCACTTCAAG+TGG 0.622032 7_2:+52207414 None:intergenic
ATGTATATCACAATTAACAT+GGG 0.622921 7_2:-52207393 Msa1061840:CDS
TGTTCCAGCTGTATAGTGCA+TGG 0.624101 7_2:-52208313 Msa1061840:CDS
AATGGAAATCGACCCGAACG+AGG 0.625609 7_2:+52208137 None:intergenic
ACAGTTAATGGACTTTACCC+AGG 0.628423 7_2:-52208887 Msa1061840:CDS
CAACATAACTGGTCTTGTAG+GGG 0.631983 7_2:-52207457 Msa1061840:CDS
GGTATAGGGCTCGGTGTATG+CGG 0.637849 7_2:+52207731 None:intergenic
ATTGGTGTATTGTTATGAAG+TGG 0.638592 7_2:+52207498 None:intergenic
TTGATAGTGAAAGCATCAGA+TGG 0.646028 7_2:+52208014 None:intergenic
TACCACTGTGAATTTGTGAT+CGG 0.646281 7_2:+52207764 None:intergenic
CCAAAGCTGGAAGTCAGGGA+TGG 0.647318 7_2:-52208863 Msa1061840:CDS
GGTGGACCAAGTGAAGTTGA+AGG 0.647739 7_2:+52206651 None:intergenic
CATTTAGGCAAATCAGCAGG+TGG 0.649176 7_2:+52206630 None:intergenic
AACATAACTGGTCTTGTAGG+GGG 0.652841 7_2:-52207456 Msa1061840:CDS
TATGTTCATCCACTTCAAGT+GGG 0.681147 7_2:+52207415 None:intergenic
TTGGTATGATGGAAATGTTG+AGG 0.683745 7_2:-52208075 Msa1061840:CDS
GTGGATGATCATAATCTATG+GGG 0.686953 7_2:-52206711 Msa1061840:CDS
AACAAGAAGGAACATTATGG+TGG 0.690252 7_2:-52208214 Msa1061840:CDS
GTAACCCTCGTAAAAGACGA+CGG 0.705472 7_2:+52207566 None:intergenic
ATTCAAATACAATTCAACGG+TGG 0.707341 7_2:-52207115 Msa1061840:CDS
TGCCGATCACAAATTCACAG+TGG 0.784044 7_2:-52207766 Msa1061840:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTATTTATCTTTTTATG+GGG - chr7_2:52206931-52206950 Msa1061840:CDS 10.0%
!!! TCTAATTTTATCTTCATTTA+TGG - chr7_2:52206513-52206532 Msa1061840:three_prime_UTR 15.0%
!!! TAATTCTTTTAGAAGAATTT+GGG + chr7_2:52206863-52206882 None:intergenic 15.0%
!!! ATAATTCTTTTAGAAGAATT+TGG + chr7_2:52206864-52206883 None:intergenic 15.0%
!!! TTGTATGTAAATTTATTTTC+AGG + chr7_2:52207816-52207835 None:intergenic 15.0%
!!! AATTTCTTGATTGTTTATTT+TGG - chr7_2:52209304-52209323 Msa1061840:intron 15.0%
!! TGATTGCAATTAGTTATATT+GGG + chr7_2:52206670-52206689 None:intergenic 20.0%
!! ATGATTGCAATTAGTTATAT+TGG + chr7_2:52206671-52206690 None:intergenic 20.0%
!! CAATGAATTGTTATATTGTA+GGG + chr7_2:52207261-52207280 None:intergenic 20.0%
!!! TTTTTTTTTCCTTCCAAATT+TGG - chr7_2:52207342-52207361 Msa1061840:CDS 20.0%
!!! TGAATTTTTGAACTATGTAA+AGG - chr7_2:52207721-52207740 Msa1061840:CDS 20.0%
!!! AAAATCGTATGTTTCTATTT+CGG - chr7_2:52208105-52208124 Msa1061840:CDS 20.0%
!!! AAATTTTTTAGCAACATAAC+TGG - chr7_2:52208596-52208615 Msa1061840:intron 20.0%
!! TATGTATATCACAATTAACA+TGG - chr7_2:52208670-52208689 Msa1061840:intron 20.0%
!! ATGTATATCACAATTAACAT+GGG - chr7_2:52208671-52208690 Msa1061840:intron 20.0%
!!! TTAGGATCCAAAAATATTTT+CGG + chr7_2:52208893-52208912 None:intergenic 20.0%
!! CAAATTATACTTGAGTTTAT+CGG + chr7_2:52209086-52209105 None:intergenic 20.0%
!! TATATAGCCAATTAACATTT+AGG + chr7_2:52209452-52209471 None:intergenic 20.0%
!! TTCTTATTTGTCCTATAAGT+TGG - chr7_2:52206442-52206461 Msa1061840:three_prime_UTR 25.0%
!! TCACTTCAATATGAAGATTT+TGG - chr7_2:52206465-52206484 Msa1061840:three_prime_UTR 25.0%
!!! ATATGAAGATTTTGGTGTTA+TGG - chr7_2:52206473-52206492 Msa1061840:three_prime_UTR 25.0%
!! TCTTCTAAAAGAATTATCGA+AGG - chr7_2:52206867-52206886 Msa1061840:intron 25.0%
! ATTATCGAAGGTTTAAAGAA+AGG - chr7_2:52206879-52206898 Msa1061840:intron 25.0%
!! GACTTCACTATATTTTCTTT+TGG - chr7_2:52207025-52207044 Msa1061840:CDS 25.0%
!! CATTAGAAGACAATTTTACT+CGG + chr7_2:52207055-52207074 None:intergenic 25.0%
! CCAATGAATTGTTATATTGT+AGG + chr7_2:52207262-52207281 None:intergenic 25.0%
! CCTACAATATAACAATTCAT+TGG - chr7_2:52207259-52207278 Msa1061840:CDS 25.0%
! AAGGAAAAAAAAATGCTGAA+AGG + chr7_2:52207335-52207354 None:intergenic 25.0%
! TTATATATGAGTTCTTTCTC+TGG + chr7_2:52207636-52207655 None:intergenic 25.0%
!!! AATTTATTTTCAGGACGAAT+TGG + chr7_2:52207807-52207826 None:intergenic 25.0%
!!! AAGGAAGTACCAATAATATT+AGG - chr7_2:52207963-52207982 Msa1061840:intron 25.0%
! TACCAATAATATTAGGTGAT+TGG - chr7_2:52207970-52207989 Msa1061840:intron 25.0%
! TACCAATCACCTAATATTAT+TGG + chr7_2:52207975-52207994 None:intergenic 25.0%
! CTAAAAAATTTGTGAGCTAT+TGG + chr7_2:52208587-52208606 None:intergenic 25.0%
! GTAAAAATATGCTTCCATTA+TGG + chr7_2:52208804-52208823 None:intergenic 25.0%
! TTTACGAAGTCGAAAAATTT+AGG + chr7_2:52208869-52208888 None:intergenic 25.0%
!! TAGGATCCAAAAATATTTTC+GGG + chr7_2:52208892-52208911 None:intergenic 25.0%
! GCAATTCAAATACAATTCAA+CGG - chr7_2:52208946-52208965 Msa1061840:intron 25.0%
!! TGGTATGAATTTTCATGTTT+TGG - chr7_2:52209030-52209049 Msa1061840:intron 25.0%
! CGATAAACTCAAGTATAATT+TGG - chr7_2:52209084-52209103 Msa1061840:intron 25.0%
! ATAAAATACTTGTACATACC+AGG + chr7_2:52209184-52209203 None:intergenic 25.0%
!! TGATTTGCCTAAATGTTAAT+TGG - chr7_2:52209442-52209461 Msa1061840:intron 25.0%
! TCAAAAGAAAAATGTGAAAG+AGG + chr7_2:52209515-52209534 None:intergenic 25.0%
!! CAAGCAATAAGTACAATTTT+CGG - chr7_2:52209566-52209585 Msa1061840:CDS 25.0%
! CAATCATAGCATGTATATAT+GGG + chr7_2:52209616-52209635 None:intergenic 25.0%
! TCAATCATAGCATGTATATA+TGG + chr7_2:52209617-52209636 None:intergenic 25.0%
TATTGAAGTGACCAACTTAT+AGG + chr7_2:52206456-52206475 None:intergenic 30.0%
!!! TACAGTTGAACACACTTTTT+TGG - chr7_2:52206546-52206565 Msa1061840:three_prime_UTR 30.0%
CTAATTGCAATCATTTCTCA+CGG - chr7_2:52206677-52206696 Msa1061840:CDS 30.0%
! CTGTGACATAAATTTTTGCA+AGG - chr7_2:52206708-52206727 Msa1061840:CDS 30.0%
! GACATAAATTTTTGCAAGGT+CGG - chr7_2:52206712-52206731 Msa1061840:CDS 30.0%
CAATATAACAAGATGCAAAG+TGG - chr7_2:52206817-52206836 Msa1061840:intron 30.0%
!! ATCTTTTTATGGGGTTTGTT+CGG - chr7_2:52206940-52206959 Msa1061840:CDS 30.0%
GAAAATATAGTGAAGTCCTT+GGG + chr7_2:52207022-52207041 None:intergenic 30.0%
AGAAAATATAGTGAAGTCCT+TGG + chr7_2:52207023-52207042 None:intergenic 30.0%
ATTGAAATTGAATGAGTTGC+AGG - chr7_2:52207107-52207126 Msa1061840:CDS 30.0%
CAAGTGATTGTTACAGTTAA+TGG - chr7_2:52207165-52207184 Msa1061840:CDS 30.0%
!!! TTTTGGCTCAAATAACATAG+TGG - chr7_2:52207439-52207458 Msa1061840:CDS 30.0%
! TTTTGAACTATGTAAAGGCA+TGG - chr7_2:52207726-52207745 Msa1061840:CDS 30.0%
GGACATTGTGTTATATATTC+AGG + chr7_2:52207786-52207805 None:intergenic 30.0%
TTTAATGTGACACAACAAGA+AGG - chr7_2:52207837-52207856 Msa1061840:CDS 30.0%
ATTATTGGTACTTCCTTGTA+GGG + chr7_2:52207960-52207979 None:intergenic 30.0%
TATTATTGGTACTTCCTTGT+AGG + chr7_2:52207961-52207980 None:intergenic 30.0%
ATATTAGGTGATTGGTATGA+TGG - chr7_2:52207978-52207997 Msa1061840:CDS 30.0%
! TATAAGTTGAAAGTGAAGCA+AGG - chr7_2:52208215-52208234 Msa1061840:CDS 30.0%
ATTGGTGTATTGTTATGAAG+TGG + chr7_2:52208569-52208588 None:intergenic 30.0%
TGGAAAAGGATATTCCATAA+TGG - chr7_2:52208787-52208806 Msa1061840:intron 30.0%
!! GCATATTTTTACAATGTGAG+TGG - chr7_2:52208812-52208831 Msa1061840:CDS 30.0%
AAAAATTTAGGAGGGTTATC+TGG + chr7_2:52208857-52208876 None:intergenic 30.0%
! CGTAAACCCGAAAATATTTT+TGG - chr7_2:52208883-52208902 Msa1061840:CDS 30.0%
! TTCGGTGTAAATGTAACATT+AGG + chr7_2:52208911-52208930 None:intergenic 30.0%
ATTCAAATACAATTCAACGG+TGG - chr7_2:52208949-52208968 Msa1061840:intron 30.0%
!!! TCTTGATTGTTTATTTTGGC+AGG - chr7_2:52209308-52209327 Msa1061840:intron 30.0%
!!! CTTGATTGTTTATTTTGGCA+GGG - chr7_2:52209309-52209328 Msa1061840:intron 30.0%
!!! TTGATTGTTTATTTTGGCAG+GGG - chr7_2:52209310-52209329 Msa1061840:intron 30.0%
ATGTGGATGATCATAATCTA+TGG - chr7_2:52209351-52209370 Msa1061840:intron 30.0%
TGTGGATGATCATAATCTAT+GGG - chr7_2:52209352-52209371 Msa1061840:intron 30.0%
ACAGCATTCATAGTTGAAAA+TGG - chr7_2:52209383-52209402 Msa1061840:intron 30.0%
!!! TTTTGGTGTTATGGCAAACA+TGG - chr7_2:52206482-52206501 Msa1061840:three_prime_UTR 35.0%
!! TTTGGTGTTATGGCAAACAT+GGG - chr7_2:52206483-52206502 Msa1061840:three_prime_UTR 35.0%
!! TCTTTTTATGGGGTTTGTTC+GGG - chr7_2:52206941-52206960 Msa1061840:CDS 35.0%
CTGTAACAATCACTTGTTCA+TGG + chr7_2:52207161-52207180 None:intergenic 35.0%
TGTAACGAACCAAATTTGGA+AGG + chr7_2:52207354-52207373 None:intergenic 35.0%
CGATTGTAACGAACCAAATT+TGG + chr7_2:52207358-52207377 None:intergenic 35.0%
AAAGATAAAGTCTCCTCTCA+TGG + chr7_2:52207411-52207430 None:intergenic 35.0%
!! TCACTTTTGCGATGAATAAG+TGG - chr7_2:52207470-52207489 Msa1061840:CDS 35.0%
! GTTCTTTCTCTGGATTTTGA+TGG + chr7_2:52207626-52207645 None:intergenic 35.0%
CACAACAAGAAGGAACATTA+TGG - chr7_2:52207847-52207866 Msa1061840:CDS 35.0%
AACAAGAAGGAACATTATGG+TGG - chr7_2:52207850-52207869 Msa1061840:CDS 35.0%
CATTATCATTCAACCTCGTT+CGG - chr7_2:52207914-52207933 Msa1061840:intron 35.0%
ATTATCATTCAACCTCGTTC+GGG - chr7_2:52207915-52207934 Msa1061840:intron 35.0%
! TTGGTATGATGGAAATGTTG+AGG - chr7_2:52207989-52208008 Msa1061840:CDS 35.0%
ATCCAAAAAGAACTCGAAAC+AGG - chr7_2:52208017-52208036 Msa1061840:CDS 35.0%
!! TTGATAGTGAAAGCATCAGA+TGG + chr7_2:52208053-52208072 None:intergenic 35.0%
TCTGATGCTTTCACTATCAA+CGG - chr7_2:52208053-52208072 Msa1061840:CDS 35.0%
AAAGACCTATTTGTTCCGAA+TGG - chr7_2:52208238-52208257 Msa1061840:CDS 35.0%
TACCACTGTGAATTTGTGAT+CGG + chr7_2:52208303-52208322 None:intergenic 35.0%
ACGATTATATCGGTGGTATA+GGG + chr7_2:52208350-52208369 None:intergenic 35.0%
TGCTGCAATGACGATTATAT+CGG + chr7_2:52208360-52208379 None:intergenic 35.0%
! TGAAAAGTATATCGGCACTT+TGG + chr7_2:52208385-52208404 None:intergenic 35.0%
! GTCTGCTGTGAAAAGTATAT+CGG + chr7_2:52208393-52208412 None:intergenic 35.0%
! TGTAGTATGAACCTTTTGGT+TGG + chr7_2:52208415-52208434 None:intergenic 35.0%
ACCAAAAGGTTCATACTACA+TGG - chr7_2:52208415-52208434 Msa1061840:intron 35.0%
! TTGTTATGAAGTGGTAATGC+TGG + chr7_2:52208560-52208579 None:intergenic 35.0%
TATGTTCATCCACTTCAAGT+GGG + chr7_2:52208652-52208671 None:intergenic 35.0%
ATATGTTCATCCACTTCAAG+TGG + chr7_2:52208653-52208672 None:intergenic 35.0%
! GATGCAAATTTTTGTCCAAG+TGG + chr7_2:52208734-52208753 None:intergenic 35.0%
! TTTTTGCTTCCTGTTGGAAA+AGG - chr7_2:52208773-52208792 Msa1061840:intron 35.0%
! ATGGAATATCCTTTTCCAAC+AGG + chr7_2:52208785-52208804 None:intergenic 35.0%
CGAAGTCGAAAAATTTAGGA+GGG + chr7_2:52208865-52208884 None:intergenic 35.0%
ACGAAGTCGAAAAATTTAGG+AGG + chr7_2:52208866-52208885 None:intergenic 35.0%
ATTTACACCGAAATCGACTA+AGG - chr7_2:52208919-52208938 Msa1061840:CDS 35.0%
TTCATACCATGAAGATGCAT+GGG + chr7_2:52209019-52209038 None:intergenic 35.0%
ATTCATACCATGAAGATGCA+TGG + chr7_2:52209020-52209039 None:intergenic 35.0%
TACTTGAGTTTATCGGTAGT+AGG + chr7_2:52209079-52209098 None:intergenic 35.0%
! ATGGTTTTTGCATTGTCATG+TGG - chr7_2:52209334-52209353 Msa1061840:intron 35.0%
GTGGATGATCATAATCTATG+GGG - chr7_2:52209353-52209372 Msa1061840:intron 35.0%
TAACATTTAGGCAAATCAGC+AGG + chr7_2:52209440-52209459 None:intergenic 35.0%
GAACTGGAACTCACTATTCA+GGG - chr7_2:52206963-52206982 Msa1061840:CDS 40.0%
!! ACAGTTAATGGACTTTACCC+AGG - chr7_2:52207177-52207196 Msa1061840:CDS 40.0%
CTACATGTTTGATCCATGAG+AGG - chr7_2:52207395-52207414 Msa1061840:CDS 40.0%
GCTCAAATAACATAGTGGCT+AGG - chr7_2:52207444-52207463 Msa1061840:CDS 40.0%
TAGAGACATCAGATTAGTGC+AGG + chr7_2:52207521-52207540 None:intergenic 40.0%
TTTGTCTCGTGAAGCTTAGT+TGG + chr7_2:52207544-52207563 None:intergenic 40.0%
!! CTTTCTCTGGATTTTGATGG+TGG + chr7_2:52207623-52207642 None:intergenic 40.0%
CGAACGAGGTTGAATGATAA+TGG + chr7_2:52207916-52207935 None:intergenic 40.0%
GAACAATTGAAGAGATCACC+AGG + chr7_2:52208083-52208102 None:intergenic 40.0%
GTTGACCATTCGGAACAAAT+AGG + chr7_2:52208246-52208265 None:intergenic 40.0%
GACGATTATATCGGTGGTAT+AGG + chr7_2:52208351-52208370 None:intergenic 40.0%
TGCAATGACGATTATATCGG+TGG + chr7_2:52208357-52208376 None:intergenic 40.0%
GATATAATCGTCATTGCAGC+AGG - chr7_2:52208359-52208378 Msa1061840:intron 40.0%
! GCCATGTAGTATGAACCTTT+TGG + chr7_2:52208419-52208438 None:intergenic 40.0%
! ACTGGTTCACCAACAACATA+AGG + chr7_2:52208449-52208468 None:intergenic 40.0%
! TATGTTGTTGGTGAACCAGT+AGG - chr7_2:52208449-52208468 Msa1061840:intron 40.0%
!! AGCAACATAACTGGTCTTGT+AGG - chr7_2:52208605-52208624 Msa1061840:intron 40.0%
!! GCAACATAACTGGTCTTGTA+GGG - chr7_2:52208606-52208625 Msa1061840:intron 40.0%
!! CAACATAACTGGTCTTGTAG+GGG - chr7_2:52208607-52208626 Msa1061840:intron 40.0%
!! AACATAACTGGTCTTGTAGG+GGG - chr7_2:52208608-52208627 Msa1061840:intron 40.0%
CACTTAGCATTTACAGGACA+AGG + chr7_2:52208704-52208723 None:intergenic 40.0%
CCTGTACACTTAGCATTTAC+AGG + chr7_2:52208710-52208729 None:intergenic 40.0%
CCTGTAAATGCTAAGTGTAC+AGG - chr7_2:52208707-52208726 Msa1061840:intron 40.0%
!!! GAGTCATTTTTGCTTCCTGT+TGG - chr7_2:52208767-52208786 Msa1061840:intron 40.0%
! TGCTTCACCTTAGTCGATTT+CGG + chr7_2:52208929-52208948 None:intergenic 40.0%
CAAATACAATTCAACGGTGG+AGG - chr7_2:52208952-52208971 Msa1061840:intron 40.0%
!!! CATGTTTTGGCTCAAGACTT+CGG - chr7_2:52209043-52209062 Msa1061840:intron 40.0%
!!! ATGTTTTGGCTCAAGACTTC+GGG - chr7_2:52209044-52209063 Msa1061840:intron 40.0%
GAATCCTTCAATTCGCAACA+CGG - chr7_2:52209108-52209127 Msa1061840:intron 40.0%
ACATACCAGGATTGTCAGTT+CGG + chr7_2:52209171-52209190 None:intergenic 40.0%
!!! TGTTTATTTTGGCAGGGGTA+TGG - chr7_2:52209315-52209334 Msa1061840:intron 40.0%
! AAGTACAATTTTCGGTCACG+TGG - chr7_2:52209574-52209593 Msa1061840:CDS 40.0%
ACAAGATGCAAAGTGGTACG+TGG - chr7_2:52206824-52206843 Msa1061840:intron 45.0%
GGAACTGGAACTCACTATTC+AGG - chr7_2:52206962-52206981 Msa1061840:CDS 45.0%
TATAGTGAAGTCCTTGGGCT+AGG + chr7_2:52207017-52207036 None:intergenic 45.0%
TCAGATTAGTGCAGGAGTCA+GGG + chr7_2:52207513-52207532 None:intergenic 45.0%
ATCAGATTAGTGCAGGAGTC+AGG + chr7_2:52207514-52207533 None:intergenic 45.0%
TGTTCCAGCTGTATAGTGCA+TGG - chr7_2:52207751-52207770 Msa1061840:CDS 45.0%
CTGTATAGTGCATGGTCAGA+CGG - chr7_2:52207759-52207778 Msa1061840:CDS 45.0%
GTTGTACGTGCAACAGTTCA+TGG - chr7_2:52207888-52207907 Msa1061840:intron 45.0%
TCCATTTCCTAAGCCCTACA+AGG - chr7_2:52207944-52207963 Msa1061840:intron 45.0%
TCCTTGTAGGGCTTAGGAAA+TGG + chr7_2:52207948-52207967 None:intergenic 45.0%
!!! CGCCTGTTTCGAGTTCTTTT+TGG + chr7_2:52208022-52208041 None:intergenic 45.0%
TTCACTATCAACGGCTTTCC+TGG - chr7_2:52208062-52208081 Msa1061840:CDS 45.0%
TGCCGATCACAAATTCACAG+TGG - chr7_2:52208298-52208317 Msa1061840:CDS 45.0%
CAAATTCACAGTGGTAGCCA+TGG - chr7_2:52208307-52208326 Msa1061840:CDS 45.0%
TATATCGGTGGTATAGGGCT+CGG + chr7_2:52208345-52208364 None:intergenic 45.0%
TTCACAGCAGACCAACCAAA+AGG - chr7_2:52208401-52208420 Msa1061840:intron 45.0%
GCTGCATCACCTTATGTTGT+TGG - chr7_2:52208437-52208456 Msa1061840:intron 45.0%
GAATTGTCGAAGAGTCCTAC+TGG + chr7_2:52208467-52208486 None:intergenic 45.0%
GTAACCCTCGTAAAAGACGA+CGG + chr7_2:52208501-52208520 None:intergenic 45.0%
! AGTGGTAATGCTGGCATCAA+AGG + chr7_2:52208551-52208570 None:intergenic 45.0%
TCTTGTAGGGGGTCCTAATT+GGG - chr7_2:52208619-52208638 Msa1061840:intron 45.0%
AGTCATCCCATGCATCTTCA+TGG - chr7_2:52209010-52209029 Msa1061840:intron 45.0%
AGATTCCGAACTGACAATCC+TGG - chr7_2:52209163-52209182 Msa1061840:intron 45.0%
! CCAAGTGAAGTTGAAGGTGT+TGG + chr7_2:52209410-52209429 None:intergenic 45.0%
CCAACACCTTCAACTTCACT+TGG - chr7_2:52209407-52209426 Msa1061840:intron 45.0%
CATTTAGGCAAATCAGCAGG+TGG + chr7_2:52209437-52209456 None:intergenic 45.0%
! ACAATTTTCGGTCACGTGGT+AGG - chr7_2:52209578-52209597 Msa1061840:CDS 45.0%
!!! TATTTTTATTTATCTTTTTA+TGG - chr7_2:52206929-52206948 Msa1061840:CDS 5.0%
!!! ATTTTTATTTATCTTTTTAT+GGG - chr7_2:52206930-52206949 Msa1061840:CDS 5.0%
!!! TTTATCTTTTATTTTTTTTT+TGG - chr7_2:52207422-52207441 Msa1061840:CDS 5.0%
GATGCAAAGTGGTACGTGGT+CGG - chr7_2:52206828-52206847 Msa1061840:intron 50.0%
ATGCAAAGTGGTACGTGGTC+GGG - chr7_2:52206829-52206848 Msa1061840:intron 50.0%
! TATGGGGTTTGTTCGGGAAC+TGG - chr7_2:52206947-52206966 Msa1061840:CDS 50.0%
ACTTTACCCAGGTCCAAAGC+TGG - chr7_2:52207188-52207207 Msa1061840:CDS 50.0%
!! TGACTTCCAGCTTTGGACCT+GGG + chr7_2:52207197-52207216 None:intergenic 50.0%
AGGTCCAAAGCTGGAAGTCA+GGG - chr7_2:52207197-52207216 Msa1061840:CDS 50.0%
CTGACCATGCACTATACAGC+TGG + chr7_2:52207758-52207777 None:intergenic 50.0%
AATGGAAATCGACCCGAACG+AGG + chr7_2:52207930-52207949 None:intergenic 50.0%
GGTACTTCCTTGTAGGGCTT+AGG + chr7_2:52207954-52207973 None:intergenic 50.0%
GTCTTGTAGGGGGTCCTAAT+TGG - chr7_2:52208618-52208637 Msa1061840:intron 50.0%
CATCCACTTCAAGTGGGACA+GGG + chr7_2:52208646-52208665 None:intergenic 50.0%
TCATCCACTTCAAGTGGGAC+AGG + chr7_2:52208647-52208666 None:intergenic 50.0%
GCTAAGTGTACAGGTCCACT+TGG - chr7_2:52208716-52208735 Msa1061840:intron 50.0%
GCAACCGTGTTGCGAATTGA+AGG + chr7_2:52209115-52209134 None:intergenic 50.0%
GGTGGACCAAGTGAAGTTGA+AGG + chr7_2:52209416-52209435 None:intergenic 50.0%
TTAGGCAAATCAGCAGGTGG+TGG + chr7_2:52209434-52209453 None:intergenic 50.0%
TGCAAAGTGGTACGTGGTCG+GGG - chr7_2:52206830-52206849 Msa1061840:intron 55.0%
! TGAAGTCCTTGGGCTAGGTC+GGG + chr7_2:52207012-52207031 None:intergenic 55.0%
! GTGAAGTCCTTGGGCTAGGT+CGG + chr7_2:52207013-52207032 None:intergenic 55.0%
!! CTGACTTCCAGCTTTGGACC+TGG + chr7_2:52207198-52207217 None:intergenic 55.0%
CAGGTCCAAAGCTGGAAGTC+AGG - chr7_2:52207196-52207215 Msa1061840:CDS 55.0%
CCATCCCTGACTTCCAGCTT+TGG + chr7_2:52207204-52207223 None:intergenic 55.0%
CCAAAGCTGGAAGTCAGGGA+TGG - chr7_2:52207201-52207220 Msa1061840:CDS 55.0%
!! CGAGTGCAGCGTTGACCATT+CGG + chr7_2:52208256-52208275 None:intergenic 55.0%
!! GGTATAGGGCTCGGTGTATG+CGG + chr7_2:52208336-52208355 None:intergenic 55.0%
AAAGACGACGGCACGAGTTG+TGG + chr7_2:52208489-52208508 None:intergenic 55.0%
! TCGTGCCGTCGTCTTTTACG+AGG - chr7_2:52208493-52208512 Msa1061840:intron 55.0%
! CGTGCCGTCGTCTTTTACGA+GGG - chr7_2:52208494-52208513 Msa1061840:intron 55.0%
AGTGGGACAGGGACCCAATT+AGG + chr7_2:52208635-52208654 None:intergenic 55.0%
! CTTGGGCTAGGTCGGGAGAT+TGG + chr7_2:52207005-52207024 None:intergenic 60.0%
CAATCTCCCGACCTAGCCCA+AGG - chr7_2:52207003-52207022 Msa1061840:CDS 60.0%
GGTCCCTGTCCCACTTGAAG+TGG - chr7_2:52208640-52208659 Msa1061840:intron 60.0%
TCGCAACACGGTTGCTGTGC+CGG - chr7_2:52209120-52209139 Msa1061840:intron 60.0%
! AACACGGTTGCTGTGCCGGT+GGG - chr7_2:52209124-52209143 Msa1061840:intron 60.0%
ATAGCAGCCCATCCTCCCAC+CGG + chr7_2:52209142-52209161 None:intergenic 60.0%
! CTCGGTGTATGCGGCGTCCA+TGG + chr7_2:52208327-52208346 None:intergenic 65.0%
CAACACGGTTGCTGTGCCGG+TGG - chr7_2:52209123-52209142 Msa1061840:intron 65.0%
! TTGCTGTGCCGGTGGGAGGA+TGG - chr7_2:52209131-52209150 Msa1061840:intron 65.0%
! TGCTGTGCCGGTGGGAGGAT+GGG - chr7_2:52209132-52209151 Msa1061840:intron 65.0%
! ACGGTTGCTGTGCCGGTGGG+AGG - chr7_2:52209127-52209146 Msa1061840:intron 70.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 52206439 52209647 52206439 ID=Msa1061840;Name=Msa1061840
chr7_2 mRNA 52206439 52209647 52206439 ID=Msa1061840-mRNA-1;Parent=Msa1061840;Name=Msa1061840-mRNA-1;_AED=0.05;_eAED=0.05;_QI=36|1|0.8|1|1|1|5|187|572
chr7_2 exon 52206439 52206756 52206439 ID=Msa1061840-mRNA-1:exon:9427;Parent=Msa1061840-mRNA-1
chr7_2 exon 52206902 52207876 52206902 ID=Msa1061840-mRNA-1:exon:9426;Parent=Msa1061840-mRNA-1
chr7_2 exon 52207976 52208343 52207976 ID=Msa1061840-mRNA-1:exon:9425;Parent=Msa1061840-mRNA-1
chr7_2 exon 52208806 52208957 52208806 ID=Msa1061840-mRNA-1:exon:9424;Parent=Msa1061840-mRNA-1
chr7_2 exon 52209519 52209647 52209519 ID=Msa1061840-mRNA-1:exon:9423;Parent=Msa1061840-mRNA-1
chr7_2 five_prime_UTR 52209612 52209647 52209612 ID=Msa1061840-mRNA-1:five_prime_utr;Parent=Msa1061840-mRNA-1
chr7_2 CDS 52209519 52209611 52209519 ID=Msa1061840-mRNA-1:cds;Parent=Msa1061840-mRNA-1
chr7_2 CDS 52208806 52208957 52208806 ID=Msa1061840-mRNA-1:cds;Parent=Msa1061840-mRNA-1
chr7_2 CDS 52207976 52208343 52207976 ID=Msa1061840-mRNA-1:cds;Parent=Msa1061840-mRNA-1
chr7_2 CDS 52206902 52207876 52206902 ID=Msa1061840-mRNA-1:cds;Parent=Msa1061840-mRNA-1
chr7_2 CDS 52206626 52206756 52206626 ID=Msa1061840-mRNA-1:cds;Parent=Msa1061840-mRNA-1
chr7_2 three_prime_UTR 52206439 52206625 52206439 ID=Msa1061840-mRNA-1:three_prime_utr;Parent=Msa1061840-mRNA-1
Gene Sequence

>Msa1061840

ATGAAGATTTTGGTGTTATGGCAAACATGGGCTTTTGCTCTAATTTTATCTTCATTTATGGCTTCTGCTGCTACAGTTGAACACACTTTTTTGGTTCAAAACAAGACAATTAAACGATTGTGCCATGAACAAGTGATTGTTACAGTTAATGGACTTTACCCAGGTCCAAAGCTGGAAGTCAGGGATGGTGACTCTGTGATTGTTCATGTAATCAACAATTCACCCTACAATATAACAATTCATTGGCATGGAGTGTTCCAGCTGTATAGTGCATGGTCAGACGGTCCTGAATATATAACACAATGTCCAATTCGTCCTGAAAATAAATTTACATACAAATTTAATGTGACACAACAAGAAGGAACATTATGGTGGCATGCTCATGCATCAGTTGTACGTGCAACAGTTCATGGTGCCATTATCATTCAACCTCGTTCGGGTCGATTTCCATTTCCTAAGCCCTACAAGGAAGTACCAATAATATTAGGTGATTGGTATGATGGAAATGTTGAGGAGATTATCCAAAAAGAACTCGAAACAGGCGATAAAATACCATCTGATGCTTTCACTATCAACGGCTTTCCTGGTGATCTCTTCAATTGTTCAAAAAATCAGATGTATAAGTTGAAAGTGAAGCAAGGAAAGACCTATTTGTTCCGAATGGTCAACGCTGCACTCGCAAACAATCTTTTCTTCAAGATTGCCGATCACAAATTCACAGTGGTAGCCATGGACGCCGCATACACCGAGCCCTATACCACCGATATAATCGTCATTGCAGCAGGCCAAAGTGCCGATATACTTTTCACAGCAGACCAACCAAAAGGTTCATACTACATGGCTGCATCACCTTATGTTGTTGGTGAACCAGTAGGACTCTTCGACAATTCCACAACTCGTGCCGTCGTCTTTTACGAGGGTTACAAAAAATTAAAAACAAAACATATAGTACCTTTGATGCCAGCATTACCACTTCATAACAATACACCAATAGCTCACAAATTTTTTAGCAACATAACTGGTCTTGTAGGGGGTCCTAATTGGGTCCCTGTCCCACTTGAAGTGGATGAACATATGTATATCACAATTAACATGGGTTTAGTACCTTGTCCTGTAAATGCTAAGTGTACAGGTCCACTTGGACAAAAATTTGCATCTAGCATGAACAATGAGTCATTTTTGCTTCCTGTTGGAAAAGGATATTCCATAATGGAAGCATATTTTTACAATGTGAGTGGCATTTACACTACAGATTTTCCAGATAACCCTCCTAAATTTTTCGACTTCGTAAACCCGAAAATATTTTTGGATCCTAATGTTACATTTACACCGAAATCGACTAAGGTGAAGCAATTCAAATACAATTCAACGGTGGAGGTCGTGTTTCAAAATACAGCGATTTTGAATGCGCAAAGTCATCCCATGCATCTTCATGGTATGAATTTTCATGTTTTGGCTCAAGACTTCGGGATTTTCAATCCTACTACCGATAAACTCAAGTATAATTTGGTGAATCCTTCAATTCGCAACACGGTTGCTGTGCCGGTGGGAGGATGGGCTGCTATTAGATTCCGAACTGACAATCCTGGGGTATGGTTTTTGCATTGTCATGTGGATGATCATAATCTATGGGGACTAGTCACAGCATTCATAGTTGAAAATGGACCAACACCTTCAACTTCACTTGGTCCACCACCTGCTGATTTGCCTAAATGTTAA
Protein sequence

>Msa1061840

MKILVLWQTWAFALILSSFMASAATVEHTFLVQNKTIKRLCHEQVIVTVNGLYPGPKLEVRDGDSVIVHVINNSPYNITIHWHGVFQLYSAWSDGPEYITQCPIRPENKFTYKFNVTQQEGTLWWHAHASVVRATVHGAIIIQPRSGRFPFPKPYKEVPIILGDWYDGNVEEIIQKELETGDKIPSDAFTINGFPGDLFNCSKNQMYKLKVKQGKTYLFRMVNAALANNLFFKIADHKFTVVAMDAAYTEPYTTDIIVIAAGQSADILFTADQPKGSYYMAASPYVVGEPVGLFDNSTTRAVVFYEGYKKLKTKHIVPLMPALPLHNNTPIAHKFFSNITGLVGGPNWVPVPLEVDEHMYITINMGLVPCPVNAKCTGPLGQKFASSMNNESFLLPVGKGYSIMEAYFYNVSGIYTTDFPDNPPKFFDFVNPKIFLDPNVTFTPKSTKVKQFKYNSTVEVVFQNTAILNAQSHPMHLHGMNFHVLAQDFGIFNPTTDKLKYNLVNPSIRNTVAVPVGGWAAIRFRTDNPGVWFLHCHVDDHNLWGLVTAFIVENGPTPSTSLGPPPADLPKC*