AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0732720

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0732720 MtrunA17_Chr5g0427741 67.733 344 58 7 2 293 18 360 1.11e-140 400
Msa0732720 MtrunA17_Chr5g0427701 82.075 106 15 1 192 293 49 154 1.19e-58 184
Msa0732720 MtrunA17_Chr5g0427701 60.526 76 13 3 10 68 2 77 1.02e-17 78.6
Msa0732720 MtrunA17_Chr5g0426361 46.186 236 55 7 81 285 35 229 1.67e-49 164
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 106 sgRNAs with CRISPR-Local

Find 345 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAATTAGCATCGCTCAAAT+TGG 0.275596 5_1:+45401581 Msa0732720:five_prime_UTR
AGTGGCAGGTGAACTGGATT+TGG 0.278480 5_1:-45401466 None:intergenic
CTCAACCTTTAGAGAACATT+TGG 0.286183 5_1:+45405482 Msa0732720:CDS
GGTGGCAGATGAACTGGGTT+TGG 0.294086 5_1:-45404848 None:intergenic
AGGTTTGGTGGCAGATGAAC+TGG 0.303598 5_1:-45404854 None:intergenic
AGGAGGAGGTTGTTGAGGTT+TGG 0.304414 5_1:-45404869 None:intergenic
AGAAAACGAGTCCACATTAA+TGG 0.308389 5_1:+45401240 Msa0732720:five_prime_UTR
AGTGACAGGTACACTGGATT+TGG 0.321435 5_1:-45405521 None:intergenic
GAGGAAGAGAACTCTTCATT+TGG 0.340839 5_1:+45401414 Msa0732720:five_prime_UTR
AGGTTTGCTGCTACCTGAAA+TGG 0.340847 5_1:-45405461 None:intergenic
GAGCAGGTGCTGGGAAATCT+AGG 0.351586 5_1:+45405242 Msa0732720:intron
AGGAAGAGAACTCTTCATTT+GGG 0.352524 5_1:+45401415 Msa0732720:five_prime_UTR
AGGTTTGCTGCTATCTGAAA+TGG 0.359406 5_1:-45405365 None:intergenic
GTGGCAGATGAACTGGGTTT+GGG 0.362911 5_1:-45404847 None:intergenic
CTTGGAAACCAGCTATGGTT+TGG 0.366783 5_1:+45404590 Msa0732720:exon
AGGTTTAGTGGCAGGTGAAC+TGG 0.368177 5_1:-45401472 None:intergenic
CTTGGAAACCAGCTAGGGTT+CGG 0.369372 5_1:+45401208 Msa0732720:five_prime_UTR
AAATAGGAATTGCAACATCT+TGG 0.373274 5_1:+45404716 Msa0732720:intron
TCATCAATAGTGATATAGTT+TGG 0.375890 5_1:-45401543 None:intergenic
GTGGCAGGTGAACTGGATTT+GGG 0.378050 5_1:-45401465 None:intergenic
GAGAGGTTGTTGAGGTTTAG+TGG 0.392272 5_1:-45401484 None:intergenic
AGGAGGTTGTTGAGGTTTGG+TGG 0.395304 5_1:-45404866 None:intergenic
TTGGAAACCAGCTATGGTTT+GGG 0.395619 5_1:+45404591 Msa0732720:exon
GGTTGTTGAGGTTTAGTGGC+AGG 0.398333 5_1:-45401480 None:intergenic
TATCACTATTGATGAAATAT+CGG 0.399648 5_1:+45401551 Msa0732720:five_prime_UTR
TTGGAAACCAGCTAGGGTTC+GGG 0.406271 5_1:+45401209 Msa0732720:five_prime_UTR
GTGACAGGTACACTGGATTT+GGG 0.414367 5_1:-45405520 None:intergenic
TGCACATGACTTTGAAGAGT+TGG 0.415444 5_1:+45405744 Msa0732720:CDS
TTTGAGGTTGATGAAGGAAC+AGG 0.420892 5_1:+45404814 Msa0732720:CDS
CGGAAAGTTGCCAGGGTTGA+AGG 0.422556 5_1:+45401354 Msa0732720:five_prime_UTR
CAACATCTCGGAAAGTTGCC+AGG 0.423381 5_1:+45401346 Msa0732720:five_prime_UTR
CATCATCATCGTCATCATCT+TGG 0.436599 5_1:+45401190 Msa0732720:five_prime_UTR
TCAATCCAAATGTTCTCTAA+AGG 0.441547 5_1:-45405487 None:intergenic
CAAATGTTCTCTAAAGGTTG+AGG 0.450102 5_1:-45405481 None:intergenic
ATTGTCATCGGATTCAGATT+CGG 0.454106 5_1:-45405659 None:intergenic
TGGAAAGTAGCTAGGGTTGA+AGG 0.455680 5_1:+45404736 Msa0732720:CDS
TTTGGGGTTGATGAAGGAAC+AGG 0.458756 5_1:+45401432 Msa0732720:five_prime_UTR
TCTTCATTTGGGGTTGATGA+AGG 0.459521 5_1:+45401426 Msa0732720:five_prime_UTR
AGTTCTTGATTAATTGTAGC+AGG 0.460051 5_1:+45401159 Msa0732720:five_prime_UTR
TCAGAAAACTTCAAAGGTTG+AGG 0.462330 5_1:-45405385 None:intergenic
GGAAGAAAACGCTTCATTTG+AGG 0.463437 5_1:+45404798 Msa0732720:CDS
GTCTTAACCCGAACCCTAGC+TGG 0.465079 5_1:-45401216 None:intergenic
GAAAGTTACCTGGTGGAGAC+TGG 0.466701 5_1:-45404963 None:intergenic
CAACATCTTGGAAAGTAGCT+AGG 0.470893 5_1:+45404728 Msa0732720:CDS
AGATGAACTGGGTTTGGGAG+AGG 0.478894 5_1:-45404842 None:intergenic
GTAGCTAGGGTTGAAGGAAG+AGG 0.479980 5_1:+45404742 Msa0732720:CDS
TTTGAAATCGATTTGAGAGA+AGG 0.479999 5_1:-45401387 None:intergenic
GGTTGTTGAGGTTCAGTGAC+AGG 0.487108 5_1:-45405535 None:intergenic
AACTTTCAAGCTTTGAGAGA+GGG 0.493403 5_1:+45405338 Msa0732720:CDS
GCTTCATTTGAGGTTGATGA+AGG 0.494266 5_1:+45404808 Msa0732720:CDS
CATCATCTTGGAAACCAGCT+AGG 0.495066 5_1:+45401202 Msa0732720:five_prime_UTR
ATAGGAGGAGGAGGTTGTTG+AGG 0.506298 5_1:-45404874 None:intergenic
AGTGGTGAATCGATAGGAGG+AGG 0.513014 5_1:-45404886 None:intergenic
TCTTCCTCTTCCTTCAACCC+TGG 0.519455 5_1:-45401364 None:intergenic
GATGAACTGGGTTTGGGAGA+GGG 0.525590 5_1:-45404841 None:intergenic
TTTGAAATCGATTTGAGAGA+CGG 0.526076 5_1:-45404769 None:intergenic
CAATACCTTTGCTACGGACT+CGG 0.527612 5_1:-45405110 None:intergenic
AAAATTACATGAACGCATGA+TGG 0.532452 5_1:+45405630 Msa0732720:CDS
CAAGATGATGACGATGATGA+TGG 0.538666 5_1:-45401189 None:intergenic
GGTGAATCGATAGGAGGAGG+AGG 0.545157 5_1:-45404883 None:intergenic
TGCTGGTCAGAAAACTTCAA+AGG 0.549886 5_1:-45405391 None:intergenic
CACCAGCTATAACGTTCTGC+TGG 0.550137 5_1:-45405408 None:intergenic
GGGAGTGGTGAATCGATAGG+AGG 0.550286 5_1:-45404889 None:intergenic
ATCATCTTGGAAACCAGCTA+TGG 0.552925 5_1:+45404585 Msa0732720:exon
AGGTTCAGTGACAGGTACAC+TGG 0.553075 5_1:-45405527 None:intergenic
GAATAGGAATTGCAACATCT+CGG 0.558259 5_1:+45401334 Msa0732720:intron
GTTGCCAGGGTTGAAGGAAG+AGG 0.559344 5_1:+45401360 Msa0732720:five_prime_UTR
GACCAGCAGAACGTTATAGC+TGG 0.560883 5_1:+45405406 Msa0732720:CDS
GGTGAACTGGATTTGGGAGA+GGG 0.560922 5_1:-45401459 None:intergenic
ACGTTATAGCTGGTGGTCAA+CGG 0.563514 5_1:+45405416 Msa0732720:CDS
TCATCAGTGAGAGGTTGTTG+AGG 0.564071 5_1:-45401492 None:intergenic
TGAAAACAATACCTTTGCTA+CGG 0.565366 5_1:-45405116 None:intergenic
TCATCACTGAGAGGTTGTTG+AGG 0.566874 5_1:-45405547 None:intergenic
AACATCTTGGAAAGTAGCTA+GGG 0.567134 5_1:+45404729 Msa0732720:CDS
ACCAATCGCCAGTCTCCACC+AGG 0.572352 5_1:+45404955 Msa0732720:CDS
AGGTGAACTGGATTTGGGAG+AGG 0.578176 5_1:-45401460 None:intergenic
AGGTACACTGGATTTGGGAG+AGG 0.580607 5_1:-45405515 None:intergenic
GCACTGCATACCATTGTCAT+CGG 0.581531 5_1:-45405671 None:intergenic
CCACTCCGAGTCCGTAGCAA+AGG 0.581627 5_1:+45405105 Msa0732720:CDS
AGCAGGTGCTGGGAAATCTA+GGG 0.597989 5_1:+45405243 Msa0732720:intron
GGAAGAGAACTCTTCATTTG+GGG 0.598419 5_1:+45401416 Msa0732720:five_prime_UTR
AAAACAATATACCATTAATG+TGG 0.599425 5_1:-45401251 None:intergenic
ACCTGGTGGAGACTGGCGAT+TGG 0.601732 5_1:-45404956 None:intergenic
ATCATCTTGGAAACCAGCTA+GGG 0.603914 5_1:+45401203 Msa0732720:five_prime_UTR
TTAGATCGATCAGAAGGGAG+TGG 0.604132 5_1:-45404904 None:intergenic
GGTTTGGTGGCAGATGAACT+GGG 0.606796 5_1:-45404853 None:intergenic
AACATCTCGGAAAGTTGCCA+GGG 0.619231 5_1:+45401347 Msa0732720:five_prime_UTR
GAAGGGAGTGGTGAATCGAT+AGG 0.620702 5_1:-45404892 None:intergenic
AGGACGATGTCGACATCACA+AGG 0.620966 5_1:+45401517 Msa0732720:five_prime_UTR
ACAACCTCTCACTGATGAGG+AGG 0.624357 5_1:+45401497 Msa0732720:five_prime_UTR
GTCAACGGAGTAATGAGAGA+GGG 0.625990 5_1:+45405431 Msa0732720:CDS
GAACTTTCAAGCTTTGAGAG+AGG 0.626782 5_1:+45405337 Msa0732720:CDS
ACAACCTCTCAGTGATGAGG+AGG 0.629990 5_1:+45405552 Msa0732720:CDS
TCAACAACCTCTCACTGATG+AGG 0.640364 5_1:+45401494 Msa0732720:five_prime_UTR
CAAATCGATTTCAAACTCTG+AGG 0.646763 5_1:+45401395 Msa0732720:five_prime_UTR
CAAATCGATTTCAAACTCTG+AGG 0.646763 5_1:+45404777 Msa0732720:CDS
CAGCAGAACGTTATAGCTGG+TGG 0.647808 5_1:+45405409 Msa0732720:CDS
TCAACAACCTCTCAGTGATG+AGG 0.652314 5_1:+45405549 Msa0732720:CDS
TCGTCCTCCTCATCAGTGAG+AGG 0.657221 5_1:-45401501 None:intergenic
GAATCTGAATCCGATGACAA+TGG 0.666926 5_1:+45405661 Msa0732720:CDS
TCAACGGAGTAATGAGAGAG+GGG 0.684238 5_1:+45405432 Msa0732720:CDS
CCTTTGCTACGGACTCGGAG+TGG 0.691861 5_1:-45405105 None:intergenic
CAACGGAGTAATGAGAGAGG+GGG 0.692151 5_1:+45405433 Msa0732720:CDS
AAGTCCTCCTCATCACTGAG+AGG 0.694124 5_1:-45405556 None:intergenic
GGTCAACGGAGTAATGAGAG+AGG 0.706998 5_1:+45405430 Msa0732720:CDS
AAAACAATATACCATTAACG+TGG 0.722104 5_1:-45404633 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTCCTTTTAATTTAAAA+TGG + chr5_1:45401889-45401908 Msa0732720:intron 10.0%
!! AATTTCAATGTAATTTAATT+TGG - chr5_1:45403771-45403790 None:intergenic 10.0%
!! AAATATATTATATCAGAAAA+AGG - chr5_1:45405185-45405204 None:intergenic 10.0%
!!! TTTATATGTATTTTTTTGAT+TGG + chr5_1:45405220-45405239 Msa0732720:intron 10.0%
!! TTATTTATCTATACCAAAAT+CGG + chr5_1:45402786-45402805 Msa0732720:intron 15.0%
!! ACATTGAAATTCATAAAAAT+AGG + chr5_1:45403780-45403799 Msa0732720:intron 15.0%
!!! ATTTTTCAATAATGTGATAA+AGG + chr5_1:45404239-45404258 Msa0732720:intron 15.0%
!!! TTTTTCAATAATGTGATAAA+GGG + chr5_1:45404240-45404259 Msa0732720:intron 15.0%
!! AAAACAATATACCATTAATG+TGG - chr5_1:45401254-45401273 None:intergenic 20.0%
!! TATCACTATTGATGAAATAT+CGG + chr5_1:45401551-45401570 Msa0732720:five_prime_UTR 20.0%
!! AAGGAAAAAAAACTTAAAAG+AGG - chr5_1:45401878-45401897 None:intergenic 20.0%
!!! AATTAATTTATCTCGCTTTT+GGG - chr5_1:45403477-45403496 None:intergenic 20.0%
!! ACATAATAAAGAAATCTAAG+AGG - chr5_1:45403634-45403653 None:intergenic 20.0%
!!! GGTTTTCTTTTACTTTAAAA+TGG + chr5_1:45403714-45403733 Msa0732720:intron 20.0%
!!! AATTGCCTTATATATTTTAC+CGG - chr5_1:45404305-45404324 None:intergenic 20.0%
!! ATATTTGTTCAAGTAAAGTA+AGG + chr5_1:45404350-45404369 Msa0732720:intron 20.0%
!! TTAATAAGAGTTAATTAACC+TGG - chr5_1:45404445-45404464 None:intergenic 20.0%
!! ATCAAGAACTAAATTAGAAA+AGG - chr5_1:45401149-45401168 None:intergenic 20.0%
!! ATTTCTTGATTGATTGAAAT+AGG + chr5_1:45404700-45404719 Msa0732720:intron 20.0%
!! TTAAGAATAGAATTAGGTTA+GGG - chr5_1:45405026-45405045 None:intergenic 20.0%
!! ATTAAGAATAGAATTAGGTT+AGG - chr5_1:45405027-45405046 None:intergenic 20.0%
!! ACTCAATTAAGAATAGAATT+AGG - chr5_1:45405032-45405051 None:intergenic 20.0%
! ATCAATCAAGAAATTAGCAA+AGG - chr5_1:45401312-45401331 None:intergenic 25.0%
! TTGCTAATTTCTTGATTGAT+TGG + chr5_1:45401312-45401331 Msa0732720:intron 25.0%
! ATTTCTTGATTGATTGGAAT+AGG + chr5_1:45401318-45401337 Msa0732720:intron 25.0%
! TCATCAATAGTGATATAGTT+TGG - chr5_1:45401546-45401565 None:intergenic 25.0%
!!! TTCATAATAAGCTTTAAGAC+AGG - chr5_1:45401673-45401692 None:intergenic 25.0%
! TGAATATCTTGACTATGATT+CGG + chr5_1:45401689-45401708 Msa0732720:intron 25.0%
!!! ATCGGCCATTTTAAATTAAA+AGG - chr5_1:45401897-45401916 None:intergenic 25.0%
!!! AATGAAGAAGAGTATTTAGA+TGG + chr5_1:45402043-45402062 Msa0732720:intron 25.0%
!!! ATGAAGAAGAGTATTTAGAT+GGG + chr5_1:45402044-45402063 Msa0732720:intron 25.0%
!!! TTGTTTCTGTTATGAGAAAA+GGG + chr5_1:45402067-45402086 Msa0732720:intron 25.0%
! AACATTCCAAATGTACAAAA+AGG - chr5_1:45402154-45402173 None:intergenic 25.0%
!!! ACATTTGGAATGTTTTATAG+AGG + chr5_1:45402160-45402179 Msa0732720:intron 25.0%
!! TTTTGTGTTATGTTTTCATG+TGG + chr5_1:45402250-45402269 Msa0732720:intron 25.0%
!!! CATATGCTTTATTTGAACAT+TGG - chr5_1:45402853-45402872 None:intergenic 25.0%
!!! GTTAGTATTTAGCTTTTGTT+AGG - chr5_1:45402936-45402955 None:intergenic 25.0%
!! TTTGAGTTTGTTTATGTCAA+GGG - chr5_1:45403410-45403429 None:intergenic 25.0%
!!! TTTTGAGTTTGTTTATGTCA+AGG - chr5_1:45403411-45403430 None:intergenic 25.0%
!! CAATTAATTTATCTCGCTTT+TGG - chr5_1:45403478-45403497 None:intergenic 25.0%
! TTCCATGTATGTATTACAAA+GGG - chr5_1:45403527-45403546 None:intergenic 25.0%
! ATTCCATGTATGTATTACAA+AGG - chr5_1:45403528-45403547 None:intergenic 25.0%
! ATACATACATGGAATTGATT+CGG + chr5_1:45403533-45403552 Msa0732720:intron 25.0%
! AAAGAGGTAGTAATTAAAGA+AGG - chr5_1:45403686-45403705 None:intergenic 25.0%
!! TTACTACCTCTTTAGTTTAT+TGG + chr5_1:45403693-45403712 Msa0732720:intron 25.0%
! AGAAAACCAATAAACTAAAG+AGG - chr5_1:45403702-45403721 None:intergenic 25.0%
! CAGAAATTTGATTCTCTAAA+CGG - chr5_1:45403898-45403917 None:intergenic 25.0%
! ATTCGATAGAATTTGGAAAA+CGG - chr5_1:45404056-45404075 None:intergenic 25.0%
!!! TGATAAAGGGAAGTATTTAA+GGG + chr5_1:45404253-45404272 Msa0732720:intron 25.0%
! GAAATCCGGTAAAATATATA+AGG + chr5_1:45404297-45404316 Msa0732720:intron 25.0%
! ATAAACATAAAACGATACGT+TGG - chr5_1:45404496-45404515 None:intergenic 25.0%
! AAAACAATATACCATTAACG+TGG - chr5_1:45404636-45404655 None:intergenic 25.0%
! ATCAATCAAGAAATTAGCAA+AGG - chr5_1:45401312-45401331 None:intergenic 25.0%
AGTTCTTGATTAATTGTAGC+AGG + chr5_1:45401159-45401178 Msa0732720:five_prime_UTR 30.0%
!! TTTGAAATCGATTTGAGAGA+AGG - chr5_1:45401390-45401409 None:intergenic 30.0%
AAAATTAGCATCGCTCAAAT+TGG + chr5_1:45401581-45401600 Msa0732720:five_prime_UTR 30.0%
!!! TATCTTTTTTCGTCTTCGAT+GGG - chr5_1:45401612-45401631 None:intergenic 30.0%
GTAGAAAAATAATACACGCA+AGG - chr5_1:45401746-45401765 None:intergenic 30.0%
! GAGGTACTAGTAATTAAACA+AGG - chr5_1:45401859-45401878 None:intergenic 30.0%
TTATCCAATCTCAACTGAAT+CGG - chr5_1:45401915-45401934 None:intergenic 30.0%
TGAACTTTGTAGAGTATAGT+AGG - chr5_1:45401986-45402005 None:intergenic 30.0%
!! GTTGTTTCTGTTATGAGAAA+AGG + chr5_1:45402066-45402085 Msa0732720:intron 30.0%
AAATGTACAAAAAGGTTCGA+TGG - chr5_1:45402146-45402165 None:intergenic 30.0%
! ATCGAACCTTTTTGTACATT+TGG + chr5_1:45402145-45402164 Msa0732720:intron 30.0%
!! TTTGGAATGTTTTATAGAGG+AGG + chr5_1:45402163-45402182 Msa0732720:intron 30.0%
!!! TGTTGTTGTTTTCTTGTTGT+AGG + chr5_1:45402397-45402416 Msa0732720:intron 30.0%
!! TTGTTTTCTTGTTGTAGGTT+GGG + chr5_1:45402402-45402421 Msa0732720:intron 30.0%
!! AGCTGTCTCTATTTGTTATA+CGG + chr5_1:45402440-45402459 Msa0732720:intron 30.0%
!! TTTGTTATACGGAGTTTTTC+AGG + chr5_1:45402451-45402470 Msa0732720:intron 30.0%
! TTGTTATACGGAGTTTTTCA+GGG + chr5_1:45402452-45402471 Msa0732720:intron 30.0%
ATGAGGAAACAAAACAAAAG+TGG - chr5_1:45402496-45402515 None:intergenic 30.0%
! TAAGTTTTGCATCTGCAAAT+AGG - chr5_1:45402603-45402622 None:intergenic 30.0%
! TAAGTTTTGCATCTGCAAAT+AGG - chr5_1:45402603-45402622 None:intergenic 30.0%
ACTGAACATCATCTTAAGAA+AGG - chr5_1:45402711-45402730 None:intergenic 30.0%
TTTCGATACAAATGATGAAG+TGG - chr5_1:45402741-45402760 None:intergenic 30.0%
! TTTGAACACAATTCCGATTT+TGG - chr5_1:45402802-45402821 None:intergenic 30.0%
! TTTGAACATTGGCTGTTTAT+CGG - chr5_1:45402842-45402861 None:intergenic 30.0%
!! TTGTTTTGTGCAAAAAAGTG+GGG - chr5_1:45402881-45402900 None:intergenic 30.0%
!! GTTGTTTTGTGCAAAAAAGT+GGG - chr5_1:45402882-45402901 None:intergenic 30.0%
!!! CTTTTGTTAGGCTTTGTTTT+TGG - chr5_1:45402924-45402943 None:intergenic 30.0%
!!! GTGCCAGTTTTAATTTTGAA+CGG - chr5_1:45403111-45403130 None:intergenic 30.0%
TCCATGTATGTATTACAAAG+GGG - chr5_1:45403526-45403545 None:intergenic 30.0%
CTAGAAAAATAATACACACG+AGG - chr5_1:45403590-45403609 None:intergenic 30.0%
AATAAATTTCCAATAGCTGC+TGG + chr5_1:45403919-45403938 Msa0732720:intron 30.0%
ATAAATTTCCAATAGCTGCT+GGG + chr5_1:45403920-45403939 Msa0732720:intron 30.0%
TTACTACAAATTACGTGACA+AGG + chr5_1:45403950-45403969 Msa0732720:intron 30.0%
! GTTTTCCAAATTCTATCGAA+TGG + chr5_1:45404055-45404074 Msa0732720:intron 30.0%
TAATGCCATTCGATAGAATT+TGG - chr5_1:45404063-45404082 None:intergenic 30.0%
!! GTGATAAAGGGAAGTATTTA+AGG + chr5_1:45404252-45404271 Msa0732720:intron 30.0%
!! GATAAAGGGAAGTATTTAAG+GGG + chr5_1:45404254-45404273 Msa0732720:intron 30.0%
!! ATAAAGGGAAGTATTTAAGG+GGG + chr5_1:45404255-45404274 Msa0732720:intron 30.0%
GAACAAATATAAAAACGCGA+GGG - chr5_1:45404340-45404359 None:intergenic 30.0%
TGAACAAATATAAAAACGCG+AGG - chr5_1:45404341-45404360 None:intergenic 30.0%
AGTTCTTGATTAATTGTAGC+AGG + chr5_1:45401159-45401178 Msa0732720:five_prime_UTR 30.0%
AAATAGGAATTGCAACATCT+TGG + chr5_1:45404716-45404735 Msa0732720:intron 30.0%
!! TTTGAAATCGATTTGAGAGA+CGG - chr5_1:45401390-45401409 None:intergenic 30.0%
! TTCTTTTAGATCGATCAGAA+GGG - chr5_1:45404912-45404931 None:intergenic 30.0%
! TTTCTTTTAGATCGATCAGA+AGG - chr5_1:45404913-45404932 None:intergenic 30.0%
TTTCAAATAATCCAAACCAG+AGG - chr5_1:45405003-45405022 None:intergenic 30.0%
TGAAAACAATACCTTTGCTA+CGG - chr5_1:45405119-45405138 None:intergenic 30.0%
!!! TGTATTTTTTTGATTGGAGC+AGG + chr5_1:45405226-45405245 Msa0732720:intron 30.0%
!!! TCTGACCACAATATTTTAGT+TGG + chr5_1:45405295-45405314 Msa0732720:CDS 30.0%
!!! CTGACCACAATATTTTAGTT+GGG + chr5_1:45405296-45405315 Msa0732720:CDS 30.0%
!!! TGACCACAATATTTTAGTTG+GGG + chr5_1:45405297-45405316 Msa0732720:CDS 30.0%
TCAATCCAAATGTTCTCTAA+AGG - chr5_1:45405490-45405509 None:intergenic 30.0%
!! TCTCACTTTTGAACAAATAG+CGG + chr5_1:45405597-45405616 Msa0732720:CDS 30.0%
AAAATTACATGAACGCATGA+TGG + chr5_1:45405630-45405649 Msa0732720:CDS 30.0%
AGAAAACGAGTCCACATTAA+TGG + chr5_1:45401240-45401259 Msa0732720:five_prime_UTR 35.0%
!! TAGCAAAGGCATTCATTCAT+TGG - chr5_1:45401298-45401317 None:intergenic 35.0%
GAATAGGAATTGCAACATCT+CGG + chr5_1:45401334-45401353 Msa0732720:intron 35.0%
! CAAATCGATTTCAAACTCTG+AGG + chr5_1:45401395-45401414 Msa0732720:five_prime_UTR 35.0%
AGGAAGAGAACTCTTCATTT+GGG + chr5_1:45401415-45401434 Msa0732720:five_prime_UTR 35.0%
!!! GTATCTTTTTTCGTCTTCGA+TGG - chr5_1:45401613-45401632 None:intergenic 35.0%
GAAGACGAAAAAAGATACCT+TGG + chr5_1:45401615-45401634 Msa0732720:five_prime_UTR 35.0%
! AATGTTTTATAGAGGAGGCT+CGG + chr5_1:45402168-45402187 Msa0732720:intron 35.0%
!!! TTTTCTGTTTAGCTCTTCTG+TGG + chr5_1:45402208-45402227 Msa0732720:intron 35.0%
AGTGTTTGTGCTAGTAAAGA+TGG + chr5_1:45402278-45402297 Msa0732720:intron 35.0%
GTGTTTGTGCTAGTAAAGAT+GGG + chr5_1:45402279-45402298 Msa0732720:intron 35.0%
!!! TTTCGGTTATCTGTTTTAGC+AGG + chr5_1:45402364-45402383 Msa0732720:intron 35.0%
!! GTTGTTTTCTTGTTGTAGGT+TGG + chr5_1:45402401-45402420 Msa0732720:intron 35.0%
!! TGTTTTCTTGTTGTAGGTTG+GGG + chr5_1:45402403-45402422 Msa0732720:intron 35.0%
!! TGTTATACGGAGTTTTTCAG+GGG + chr5_1:45402453-45402472 Msa0732720:intron 35.0%
! TGTTTTGTGCAAAAAAGTGG+GGG - chr5_1:45402880-45402899 None:intergenic 35.0%
!! GGTTGTTTTGTGCAAAAAAG+TGG - chr5_1:45402883-45402902 None:intergenic 35.0%
!!! TAGGCTTTGTTTTTGGCTTT+GGG - chr5_1:45402917-45402936 None:intergenic 35.0%
!!! TTAGGCTTTGTTTTTGGCTT+TGG - chr5_1:45402918-45402937 None:intergenic 35.0%
!! CATTCTAAGGCTGCTATATT+TGG - chr5_1:45402995-45403014 None:intergenic 35.0%
!! TTTAATTTTGAACGGTGGTG+TGG - chr5_1:45403103-45403122 None:intergenic 35.0%
!!! CCAGTTTTAATTTTGAACGG+TGG - chr5_1:45403108-45403127 None:intergenic 35.0%
CCACCGTTCAAAATTAAAAC+TGG + chr5_1:45403105-45403124 Msa0732720:intron 35.0%
!!! GTTTTTGTTATTCGAGTCAG+TGG - chr5_1:45403210-45403229 None:intergenic 35.0%
CAAAACATAAACGTGGACAT+AGG + chr5_1:45403286-45403305 Msa0732720:intron 35.0%
AGCATTGTTTCAGAATTGTG+AGG - chr5_1:45403343-45403362 None:intergenic 35.0%
TAATTGACCATACACCTTTG+AGG + chr5_1:45403492-45403511 Msa0732720:intron 35.0%
! TATGTATTACAAAGGGGTGT+GGG - chr5_1:45403520-45403539 None:intergenic 35.0%
ACCCCTTTGTAATACATACA+TGG + chr5_1:45403522-45403541 Msa0732720:intron 35.0%
CTTGTCAGTGTTACAGTAAT+AGG - chr5_1:45403840-45403859 None:intergenic 35.0%
CTATTACTGTAACACTGACA+AGG + chr5_1:45403838-45403857 Msa0732720:intron 35.0%
! AATGTTCACGAGACACATTT+TGG - chr5_1:45403992-45404011 None:intergenic 35.0%
AAAATGTGTCTCGTGAACAT+TGG + chr5_1:45403991-45404010 Msa0732720:intron 35.0%
GTAAGGATTCTTCACGAAAA+AGG + chr5_1:45404367-45404386 Msa0732720:intron 35.0%
AAAACGATACGTTGGAGAAT+TGG - chr5_1:45404488-45404507 None:intergenic 35.0%
! CAAGATGATGATGATGATGA+TGG - chr5_1:45404574-45404593 None:intergenic 35.0%
CATCATCATCATCATCATCT+TGG + chr5_1:45404572-45404591 Msa0732720:five_prime_UTR 35.0%
AAAAAACGAGTCCACGTTAA+TGG + chr5_1:45404622-45404641 Msa0732720:CDS 35.0%
!! TAGCAAAGGCATTCATTCAT+TGG - chr5_1:45401298-45401317 None:intergenic 35.0%
AACATCTTGGAAAGTAGCTA+GGG + chr5_1:45404729-45404748 Msa0732720:CDS 35.0%
! CAAATCGATTTCAAACTCTG+AGG + chr5_1:45401395-45401414 Msa0732720:five_prime_UTR 35.0%
!!! GACCACAATATTTTAGTTGG+GGG + chr5_1:45405298-45405317 Msa0732720:CDS 35.0%
!!! AATATTTTAGTTGGGGGTCA+AGG + chr5_1:45405304-45405323 Msa0732720:CDS 35.0%
!!! ATATTTTAGTTGGGGGTCAA+GGG + chr5_1:45405305-45405324 Msa0732720:CDS 35.0%
!! AACTTTCAAGCTTTGAGAGA+GGG + chr5_1:45405338-45405357 Msa0732720:CDS 35.0%
TCAGAAAACTTCAAAGGTTG+AGG - chr5_1:45405388-45405407 None:intergenic 35.0%
! CAAATGTTCTCTAAAGGTTG+AGG - chr5_1:45405484-45405503 None:intergenic 35.0%
! CTCAACCTTTAGAGAACATT+TGG + chr5_1:45405482-45405501 Msa0732720:CDS 35.0%
ATTGTCATCGGATTCAGATT+CGG - chr5_1:45405662-45405681 None:intergenic 35.0%
! CAAGATGATGACGATGATGA+TGG - chr5_1:45401192-45401211 None:intergenic 40.0%
CATCATCATCGTCATCATCT+TGG + chr5_1:45401190-45401209 Msa0732720:five_prime_UTR 40.0%
ATCATCTTGGAAACCAGCTA+GGG + chr5_1:45401203-45401222 Msa0732720:five_prime_UTR 40.0%
GAGGAAGAGAACTCTTCATT+TGG + chr5_1:45401414-45401433 Msa0732720:five_prime_UTR 40.0%
GGAAGAGAACTCTTCATTTG+GGG + chr5_1:45401416-45401435 Msa0732720:five_prime_UTR 40.0%
!! TCTTCATTTGGGGTTGATGA+AGG + chr5_1:45401426-45401445 Msa0732720:five_prime_UTR 40.0%
! CACCTAGTTACTTTCTAGAG+CGG + chr5_1:45402020-45402039 Msa0732720:intron 40.0%
!! TTCCGCTCTAGAAAGTAACT+AGG - chr5_1:45402025-45402044 None:intergenic 40.0%
!! GTGTTTAGATGGCTTGGTAT+TGG + chr5_1:45402110-45402129 Msa0732720:intron 40.0%
CTCTTCTGTGGTGTATATTC+AGG + chr5_1:45402220-45402239 Msa0732720:intron 40.0%
CTGTGGTGTATATTCAGGTA+AGG + chr5_1:45402225-45402244 Msa0732720:intron 40.0%
!!! GTTTGTGGGGAAGTGTTTTT+CGG + chr5_1:45402347-45402366 Msa0732720:intron 40.0%
GTATGTGCATGTTGAACATG+AGG + chr5_1:45402631-45402650 Msa0732720:intron 40.0%
!!! AGGCTTTGTTTTTGGCTTTG+GGG - chr5_1:45402916-45402935 None:intergenic 40.0%
TCTTGCTGCGATTCATTCTA+AGG - chr5_1:45403008-45403027 None:intergenic 40.0%
TCACTCCAAATCTGTATGGA+CGG - chr5_1:45403136-45403155 None:intergenic 40.0%
ACAAAAACTGATGCAGCAGA+CGG + chr5_1:45403222-45403241 Msa0732720:intron 40.0%
!!! TGTTTTGCTCTGGAGTAATC+TGG - chr5_1:45403273-45403292 None:intergenic 40.0%
TCCAGAGCAAAACATAAACG+TGG + chr5_1:45403279-45403298 Msa0732720:intron 40.0%
! TCCACGTTTATGTTTTGCTC+TGG - chr5_1:45403283-45403302 None:intergenic 40.0%
TGTTTCAGAATTGTGAGGTG+CGG - chr5_1:45403338-45403357 None:intergenic 40.0%
! TTCTCGGTAGTAGTTCTATG+TGG - chr5_1:45403371-45403390 None:intergenic 40.0%
ATAGAACTACTACCGAGAAC+TGG + chr5_1:45403372-45403391 Msa0732720:intron 40.0%
GTATGTATTACAAAGGGGTG+TGG - chr5_1:45403521-45403540 None:intergenic 40.0%
ATGGACGATTCAGTTGAGAT+TGG + chr5_1:45403733-45403752 Msa0732720:intron 40.0%
ACATTTCTTCTGAACGTTGC+TGG + chr5_1:45404085-45404104 Msa0732720:intron 40.0%
! TACCGGATTTCGTTGTTGTT+GGG - chr5_1:45404288-45404307 None:intergenic 40.0%
TTACCGGATTTCGTTGTTGT+TGG - chr5_1:45404289-45404308 None:intergenic 40.0%
GGATTCTTCACGAAAAAGGA+AGG + chr5_1:45404371-45404390 Msa0732720:intron 40.0%
GCAGAGAGAGATTCTCAATA+GGG - chr5_1:45404399-45404418 None:intergenic 40.0%
! TTGGTGGTTGCATTAGGTTA+GGG - chr5_1:45404469-45404488 None:intergenic 40.0%
! ATTGGTGGTTGCATTAGGTT+AGG - chr5_1:45404470-45404489 None:intergenic 40.0%
ATCATCTTGGAAACCAGCTA+TGG + chr5_1:45401203-45401222 Msa0732720:five_prime_UTR 40.0%
TTGGAAACCAGCTATGGTTT+GGG + chr5_1:45404591-45404610 Msa0732720:exon 40.0%
!! GTTTTAACCCAAACCATAGC+TGG - chr5_1:45404601-45404620 None:intergenic 40.0%
CAACATCTTGGAAAGTAGCT+AGG + chr5_1:45404728-45404747 Msa0732720:CDS 40.0%
GGAAGAAAACGCTTCATTTG+AGG + chr5_1:45404798-45404817 Msa0732720:CDS 40.0%
!! GCTTCATTTGAGGTTGATGA+AGG + chr5_1:45404808-45404827 Msa0732720:CDS 40.0%
!! TTTGAGGTTGATGAAGGAAC+AGG + chr5_1:45404814-45404833 Msa0732720:CDS 40.0%
GAAGAATAGCGAAAGTTACC+TGG - chr5_1:45404976-45404995 None:intergenic 40.0%
ATTCTTCTTCTCCTCTGGTT+TGG + chr5_1:45404989-45405008 Msa0732720:intron 40.0%
GACCCCCAACTAAAATATTG+TGG - chr5_1:45405303-45405322 None:intergenic 40.0%
!! GAACTTTCAAGCTTTGAGAG+AGG + chr5_1:45405337-45405356 Msa0732720:CDS 40.0%
!! AGGTTTGCTGCTATCTGAAA+TGG - chr5_1:45405368-45405387 None:intergenic 40.0%
TGCTGGTCAGAAAACTTCAA+AGG - chr5_1:45405394-45405413 None:intergenic 40.0%
GAATCTGAATCCGATGACAA+TGG + chr5_1:45405661-45405680 Msa0732720:CDS 40.0%
! TGCACATGACTTTGAAGAGT+TGG + chr5_1:45405744-45405763 Msa0732720:CDS 40.0%
CATCATCTTGGAAACCAGCT+AGG + chr5_1:45401202-45401221 Msa0732720:five_prime_UTR 45.0%
AACATCTCGGAAAGTTGCCA+GGG + chr5_1:45401347-45401366 Msa0732720:five_prime_UTR 45.0%
!! TTTGGGGTTGATGAAGGAAC+AGG + chr5_1:45401432-45401451 Msa0732720:five_prime_UTR 45.0%
GAGAGGTTGTTGAGGTTTAG+TGG - chr5_1:45401487-45401506 None:intergenic 45.0%
TCATCAGTGAGAGGTTGTTG+AGG - chr5_1:45401495-45401514 None:intergenic 45.0%
TCAACAACCTCTCACTGATG+AGG + chr5_1:45401494-45401513 Msa0732720:five_prime_UTR 45.0%
CACAATTGCACTGCATACCA+AGG - chr5_1:45401635-45401654 None:intergenic 45.0%
! ATGGCCGATTCAGTTGAGAT+TGG + chr5_1:45401908-45401927 Msa0732720:intron 45.0%
! TGTGGTCGTTGGTGTTTAGA+TGG + chr5_1:45402099-45402118 Msa0732720:intron 45.0%
! TCGTTGGTGTTTAGATGGCT+TGG + chr5_1:45402104-45402123 Msa0732720:intron 45.0%
! TTCCTTCCCCTTACGTTTTG+CGG + chr5_1:45402313-45402332 Msa0732720:intron 45.0%
AAGGTTCCGCAAAACGTAAG+GGG - chr5_1:45402322-45402341 None:intergenic 45.0%
GAAGGTTCCGCAAAACGTAA+GGG - chr5_1:45402323-45402342 None:intergenic 45.0%
AGAAGGTTCCGCAAAACGTA+AGG - chr5_1:45402324-45402343 None:intergenic 45.0%
ATAGAGACAGCTGCCAAAAC+AGG - chr5_1:45402432-45402451 None:intergenic 45.0%
AGACCAAGTCTACACGTGAA+AGG - chr5_1:45402523-45402542 None:intergenic 45.0%
!! GGCTGCTATATTTGGTGCTA+CGG - chr5_1:45402987-45403006 None:intergenic 45.0%
! GCAGATTTTGTACTGCAGAG+TGG - chr5_1:45403039-45403058 None:intergenic 45.0%
CACAACCGTCCATACAGATT+TGG + chr5_1:45403128-45403147 Msa0732720:intron 45.0%
CTGGTCACTCCAAATCTGTA+TGG - chr5_1:45403140-45403159 None:intergenic 45.0%
! CATACAGATTTGGAGTGACC+AGG + chr5_1:45403138-45403157 Msa0732720:intron 45.0%
GTGACCAGGACAATAAACCA+AGG + chr5_1:45403152-45403171 Msa0732720:intron 45.0%
TCTGCCTTGGTTTATTGTCC+TGG - chr5_1:45403159-45403178 None:intergenic 45.0%
! CTTTTTGCGTTCTTCTGCCT+TGG - chr5_1:45403172-45403191 None:intergenic 45.0%
!! TTGCTCTGGAGTAATCTGGT+TGG - chr5_1:45403269-45403288 None:intergenic 45.0%
CTGCTTCTTTGACCAGTTCT+CGG - chr5_1:45403387-45403406 None:intergenic 45.0%
ACATTTCTCCCAGCAGCTAT+TGG - chr5_1:45403931-45403950 None:intergenic 45.0%
!! GTGCCACTGCTATTTCATTC+CGG + chr5_1:45404022-45404041 Msa0732720:intron 45.0%
!! TGCCACTGCTATTTCATTCC+GGG + chr5_1:45404023-45404042 Msa0732720:intron 45.0%
AACCCGGAATGAAATAGCAG+TGG - chr5_1:45404028-45404047 None:intergenic 45.0%
TTGGAAAACGGTTAGCAACC+CGG - chr5_1:45404044-45404063 None:intergenic 45.0%
AGCCCAACAACAACGAAATC+CGG + chr5_1:45404283-45404302 Msa0732720:intron 45.0%
CGCAGAGAGAGATTCTCAAT+AGG - chr5_1:45404400-45404419 None:intergenic 45.0%
! GCGATCTCTTTTCTTCTCGA+TGG + chr5_1:45404417-45404436 Msa0732720:intron 45.0%
! GGAGAATTGGTGGTTGCATT+AGG - chr5_1:45404475-45404494 None:intergenic 45.0%
ACGATACGTTGGAGAATTGG+TGG - chr5_1:45404485-45404504 None:intergenic 45.0%
CTTGGAAACCAGCTATGGTT+TGG + chr5_1:45404590-45404609 Msa0732720:exon 45.0%
TGGAAAGTAGCTAGGGTTGA+AGG + chr5_1:45404736-45404755 Msa0732720:CDS 45.0%
TTAGATCGATCAGAAGGGAG+TGG - chr5_1:45404907-45404926 None:intergenic 45.0%
GAATAGCGAAAGTTACCTGG+TGG - chr5_1:45404973-45404992 None:intergenic 45.0%
TCGCTATTCTTCTTCTCCTC+TGG + chr5_1:45404984-45405003 Msa0732720:intron 45.0%
CAATACCTTTGCTACGGACT+CGG - chr5_1:45405113-45405132 None:intergenic 45.0%
!! TTTTTGATTGGAGCAGGTGC+TGG + chr5_1:45405232-45405251 Msa0732720:intron 45.0%
!! TTTTGATTGGAGCAGGTGCT+GGG + chr5_1:45405233-45405252 Msa0732720:intron 45.0%
ACGTTATAGCTGGTGGTCAA+CGG + chr5_1:45405416-45405435 Msa0732720:CDS 45.0%
GTCAACGGAGTAATGAGAGA+GGG + chr5_1:45405431-45405450 Msa0732720:CDS 45.0%
TCAACGGAGTAATGAGAGAG+GGG + chr5_1:45405432-45405451 Msa0732720:CDS 45.0%
AGAGGGGGAAAATCCATTTC+AGG + chr5_1:45405448-45405467 Msa0732720:CDS 45.0%
!! AGGTTTGCTGCTACCTGAAA+TGG - chr5_1:45405464-45405483 None:intergenic 45.0%
GTGACAGGTACACTGGATTT+GGG - chr5_1:45405523-45405542 None:intergenic 45.0%
AGTGACAGGTACACTGGATT+TGG - chr5_1:45405524-45405543 None:intergenic 45.0%
TCATCACTGAGAGGTTGTTG+AGG - chr5_1:45405550-45405569 None:intergenic 45.0%
TCAACAACCTCTCAGTGATG+AGG + chr5_1:45405549-45405568 Msa0732720:CDS 45.0%
GCACTGCATACCATTGTCAT+CGG - chr5_1:45405674-45405693 None:intergenic 45.0%
!! TTGAAAATAAATTTAAAAAA+TGG - chr5_1:45401803-45401822 None:intergenic 5.0%
!! ATATATATTGAAAAAAAATT+AGG - chr5_1:45404209-45404228 None:intergenic 5.0%
CTTGGAAACCAGCTAGGGTT+CGG + chr5_1:45401208-45401227 Msa0732720:five_prime_UTR 50.0%
TTGGAAACCAGCTAGGGTTC+GGG + chr5_1:45401209-45401228 Msa0732720:five_prime_UTR 50.0%
CAACATCTCGGAAAGTTGCC+AGG + chr5_1:45401346-45401365 Msa0732720:five_prime_UTR 50.0%
TCTTCCTCTTCCTTCAACCC+TGG - chr5_1:45401367-45401386 None:intergenic 50.0%
GGTGAACTGGATTTGGGAGA+GGG - chr5_1:45401462-45401481 None:intergenic 50.0%
AGGTGAACTGGATTTGGGAG+AGG - chr5_1:45401463-45401482 None:intergenic 50.0%
GTGGCAGGTGAACTGGATTT+GGG - chr5_1:45401468-45401487 None:intergenic 50.0%
AGTGGCAGGTGAACTGGATT+TGG - chr5_1:45401469-45401488 None:intergenic 50.0%
AGGTTTAGTGGCAGGTGAAC+TGG - chr5_1:45401475-45401494 None:intergenic 50.0%
GGTTGTTGAGGTTTAGTGGC+AGG - chr5_1:45401483-45401502 None:intergenic 50.0%
ACAACCTCTCACTGATGAGG+AGG + chr5_1:45401497-45401516 Msa0732720:five_prime_UTR 50.0%
AGGACGATGTCGACATCACA+AGG + chr5_1:45401517-45401536 Msa0732720:five_prime_UTR 50.0%
AGAAAAGGGCCCTTAGAGTG+TGG + chr5_1:45402081-45402100 Msa0732720:intron 50.0%
CACCAACGACCACACTCTAA+GGG - chr5_1:45402093-45402112 None:intergenic 50.0%
ACACCAACGACCACACTCTA+AGG - chr5_1:45402094-45402113 None:intergenic 50.0%
! AGGCTCGGTTGAAGAAGCTT+AGG + chr5_1:45402183-45402202 Msa0732720:intron 50.0%
TTCCGCAAAACGTAAGGGGA+AGG - chr5_1:45402318-45402337 None:intergenic 50.0%
! CGGAACCTTCTGCTGTTTGT+GGG + chr5_1:45402333-45402352 Msa0732720:intron 50.0%
! GGAACCTTCTGCTGTTTGTG+GGG + chr5_1:45402334-45402353 Msa0732720:intron 50.0%
ACTTCCCCACAAACAGCAGA+AGG - chr5_1:45402341-45402360 None:intergenic 50.0%
TTCAGGGGCGATACACGTAT+AGG + chr5_1:45402468-45402487 Msa0732720:intron 50.0%
TACACGTGAAAGGCTGGATG+AGG - chr5_1:45402513-45402532 None:intergenic 50.0%
CAAGTCTACACGTGAAAGGC+TGG - chr5_1:45402519-45402538 None:intergenic 50.0%
CAGCCTTTCACGTGTAGACT+TGG + chr5_1:45402517-45402536 Msa0732720:intron 50.0%
!! TTGGCGGGTTTGGCTATGAA+CGG - chr5_1:45403076-45403095 None:intergenic 50.0%
AGACGGAAGAAACAAACCGC+AGG + chr5_1:45403239-45403258 Msa0732720:intron 50.0%
!! TAATCTGGTTGGTTCGCCTG+CGG - chr5_1:45403258-45403277 None:intergenic 50.0%
TTCAGAATTGTGAGGTGCGG+AGG - chr5_1:45403335-45403354 None:intergenic 50.0%
AGCGAGGGGGTGAATTCTTT+GGG - chr5_1:45403451-45403470 None:intergenic 50.0%
TAGCGAGGGGGTGAATTCTT+TGG - chr5_1:45403452-45403471 None:intergenic 50.0%
! GTGGGATCCTCAAAGGTGTA+TGG - chr5_1:45403502-45403521 None:intergenic 50.0%
! CTTTTCTTCTCGATGGCACC+AGG + chr5_1:45404424-45404443 Msa0732720:intron 50.0%
GTAGCTAGGGTTGAAGGAAG+AGG + chr5_1:45404742-45404761 Msa0732720:CDS 50.0%
GATGAACTGGGTTTGGGAGA+GGG - chr5_1:45404844-45404863 None:intergenic 50.0%
AGATGAACTGGGTTTGGGAG+AGG - chr5_1:45404845-45404864 None:intergenic 50.0%
GTGGCAGATGAACTGGGTTT+GGG - chr5_1:45404850-45404869 None:intergenic 50.0%
!! GGTTTGGTGGCAGATGAACT+GGG - chr5_1:45404856-45404875 None:intergenic 50.0%
!! AGGTTTGGTGGCAGATGAAC+TGG - chr5_1:45404857-45404876 None:intergenic 50.0%
AGGAGGTTGTTGAGGTTTGG+TGG - chr5_1:45404869-45404888 None:intergenic 50.0%
AGGAGGAGGTTGTTGAGGTT+TGG - chr5_1:45404872-45404891 None:intergenic 50.0%
ATAGGAGGAGGAGGTTGTTG+AGG - chr5_1:45404877-45404896 None:intergenic 50.0%
AGTGGTGAATCGATAGGAGG+AGG - chr5_1:45404889-45404908 None:intergenic 50.0%
GAAGGGAGTGGTGAATCGAT+AGG - chr5_1:45404895-45404914 None:intergenic 50.0%
GAAAGTTACCTGGTGGAGAC+TGG - chr5_1:45404966-45404985 None:intergenic 50.0%
!! AGCAGGTGCTGGGAAATCTA+GGG + chr5_1:45405243-45405262 Msa0732720:intron 50.0%
TTGGGGGTCAAGGGAGTAAT+TGG + chr5_1:45405314-45405333 Msa0732720:CDS 50.0%
TGGGGGTCAAGGGAGTAATT+GGG + chr5_1:45405315-45405334 Msa0732720:CDS 50.0%
GACCAGCAGAACGTTATAGC+TGG + chr5_1:45405406-45405425 Msa0732720:CDS 50.0%
CACCAGCTATAACGTTCTGC+TGG - chr5_1:45405411-45405430 None:intergenic 50.0%
CAGCAGAACGTTATAGCTGG+TGG + chr5_1:45405409-45405428 Msa0732720:CDS 50.0%
GGTCAACGGAGTAATGAGAG+AGG + chr5_1:45405430-45405449 Msa0732720:CDS 50.0%
CAACGGAGTAATGAGAGAGG+GGG + chr5_1:45405433-45405452 Msa0732720:CDS 50.0%
AGGTACACTGGATTTGGGAG+AGG - chr5_1:45405518-45405537 None:intergenic 50.0%
AGGTTCAGTGACAGGTACAC+TGG - chr5_1:45405530-45405549 None:intergenic 50.0%
GGTTGTTGAGGTTCAGTGAC+AGG - chr5_1:45405538-45405557 None:intergenic 50.0%
ACAACCTCTCAGTGATGAGG+AGG + chr5_1:45405552-45405571 Msa0732720:CDS 50.0%
AAGTCCTCCTCATCACTGAG+AGG - chr5_1:45405559-45405578 None:intergenic 50.0%
GTCTTAACCCGAACCCTAGC+TGG - chr5_1:45401219-45401238 None:intergenic 55.0%
CGGAAAGTTGCCAGGGTTGA+AGG + chr5_1:45401354-45401373 Msa0732720:five_prime_UTR 55.0%
GTTGCCAGGGTTGAAGGAAG+AGG + chr5_1:45401360-45401379 Msa0732720:five_prime_UTR 55.0%
TCGTCCTCCTCATCAGTGAG+AGG - chr5_1:45401504-45401523 None:intergenic 55.0%
! GCGGAACCTTCTGCTGTTTG+TGG + chr5_1:45402332-45402351 Msa0732720:intron 55.0%
!! TAGGTTGGGGCCACCTGTTT+TGG + chr5_1:45402416-45402435 Msa0732720:intron 55.0%
GAGACAGCTGCCAAAACAGG+TGG - chr5_1:45402429-45402448 None:intergenic 55.0%
!! TGGCTTTGGGGCAATTTCGC+TGG - chr5_1:45402904-45402923 None:intergenic 55.0%
TGAACGGTGGTGTGGTGTGT+TGG - chr5_1:45403095-45403114 None:intergenic 55.0%
GAGGGGGTGAATTCTTTGGG+AGG - chr5_1:45403448-45403467 None:intergenic 55.0%
!! TCGCTTTTGGGTGTAGCGAG+GGG - chr5_1:45403465-45403484 None:intergenic 55.0%
!! CTCGCTTTTGGGTGTAGCGA+GGG - chr5_1:45403466-45403485 None:intergenic 55.0%
!! TCTCGCTTTTGGGTGTAGCG+AGG - chr5_1:45403467-45403486 None:intergenic 55.0%
! AAGGGGTGTGGGATCCTCAA+AGG - chr5_1:45403509-45403528 None:intergenic 55.0%
GGTGGCAGATGAACTGGGTT+TGG - chr5_1:45404851-45404870 None:intergenic 55.0%
GGTGAATCGATAGGAGGAGG+AGG - chr5_1:45404886-45404905 None:intergenic 55.0%
GGGAGTGGTGAATCGATAGG+AGG - chr5_1:45404892-45404911 None:intergenic 55.0%
!! GAGCAGGTGCTGGGAAATCT+AGG + chr5_1:45405242-45405261 Msa0732720:intron 55.0%
GGCCCTTAGAGTGTGGTCGT+TGG + chr5_1:45402088-45402107 Msa0732720:intron 60.0%
GCGGGTTTGGCTATGAACGG+TGG - chr5_1:45403073-45403092 None:intergenic 60.0%
!! GTGTGGTGTGTTGGCGGGTT+TGG - chr5_1:45403086-45403105 None:intergenic 60.0%
ACGGTGGTGTGGTGTGTTGG+CGG - chr5_1:45403092-45403111 None:intergenic 60.0%
!! CGCTTTTGGGTGTAGCGAGG+GGG - chr5_1:45403464-45403483 None:intergenic 60.0%
ACCAATCGCCAGTCTCCACC+AGG + chr5_1:45404955-45404974 Msa0732720:CDS 60.0%
ACCTGGTGGAGACTGGCGAT+TGG - chr5_1:45404959-45404978 None:intergenic 60.0%
CCTTTGCTACGGACTCGGAG+TGG - chr5_1:45405108-45405127 None:intergenic 60.0%
CCACTCCGAGTCCGTAGCAA+AGG + chr5_1:45405105-45405124 Msa0732720:CDS 60.0%
! CGGTGGTGTGGTGTGTTGGC+GGG - chr5_1:45403091-45403110 None:intergenic 65.0%
GAGGTGCGGAGGCTGCTGCT+TGG - chr5_1:45403324-45403343 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 45401118 45405783 45401118 ID=Msa0732720;Name=Msa0732720
chr5_1 mRNA 45401118 45405783 45401118 ID=Msa0732720-mRNA-1;Parent=Msa0732720;Name=Msa0732720-mRNA-1;_AED=0.10;_eAED=0.22;_QI=482|0.8|0.33|1|0.8|1|6|0|294
chr5_1 exon 45401118 45401261 45401118 ID=Msa0732720-mRNA-1:exon:12940;Parent=Msa0732720-mRNA-1
chr5_1 exon 45401340 45401636 45401340 ID=Msa0732720-mRNA-1:exon:12941;Parent=Msa0732720-mRNA-1
chr5_1 exon 45404563 45404643 45404563 ID=Msa0732720-mRNA-1:exon:12942;Parent=Msa0732720-mRNA-1
chr5_1 exon 45404722 45404976 45404722 ID=Msa0732720-mRNA-1:exon:12943;Parent=Msa0732720-mRNA-1
chr5_1 exon 45405073 45405126 45405073 ID=Msa0732720-mRNA-1:exon:12944;Parent=Msa0732720-mRNA-1
chr5_1 exon 45405248 45405783 45405248 ID=Msa0732720-mRNA-1:exon:12945;Parent=Msa0732720-mRNA-1
chr5_1 five_prime_UTR 45401118 45401261 45401118 ID=Msa0732720-mRNA-1:five_prime_utr;Parent=Msa0732720-mRNA-1
chr5_1 five_prime_UTR 45401340 45401636 45401340 ID=Msa0732720-mRNA-1:five_prime_utr;Parent=Msa0732720-mRNA-1
chr5_1 five_prime_UTR 45404563 45404603 45404563 ID=Msa0732720-mRNA-1:five_prime_utr;Parent=Msa0732720-mRNA-1
chr5_1 CDS 45404604 45404643 45404604 ID=Msa0732720-mRNA-1:cds;Parent=Msa0732720-mRNA-1
chr5_1 CDS 45404722 45404976 45404722 ID=Msa0732720-mRNA-1:cds;Parent=Msa0732720-mRNA-1
chr5_1 CDS 45405073 45405126 45405073 ID=Msa0732720-mRNA-1:cds;Parent=Msa0732720-mRNA-1
chr5_1 CDS 45405248 45405783 45405248 ID=Msa0732720-mRNA-1:cds;Parent=Msa0732720-mRNA-1
Gene Sequence

>Msa0732720

ATGGTTTGGGTTAAAACGAAAAAACGAGTCCACGTTAATGGAATTGCAACATCTTGGAAAGTAGCTAGGGTTGAAGGAAGAGGAAGACCGTCTCTCAAATCGATTTCAAACTCTGAGGAAGAAAACGCTTCATTTGAGGTTGATGAAGGAACAGGAGTGCCCTCTCCCAAACCCAGTTCATCTGCCACCAAACCTCAACAACCTCCTCCTCCTATCGATTCACCACTCCCTTCTGATCGATCTAAAAGAAAGAAGAGAAAGACAGCTACACGCACCAATCGCCAGTCTCCACCAGAAAGAAGACTTCGAAAAGCTAAAAAAGAAATGCCACTCCGAGTCCGTAGCAAAGGTGCTGGGAAATCTAGGGTTGAAAGCATAAGCAAACTGTTCTCAAGCTCTGACCACAATATTTTAGTTGGGGGTCAAGGGAGTAATTGGGAACTTTCAAGCTTTGAGAGAGGGAAATCCATTTCAGATAGCAGCAAACCTCAACCTTTGAAGTTTTCTGACCAGCAGAACGTTATAGCTGGTGGTCAACGGAGTAATGAGAGAGGGGGAAAATCCATTTCAGGTAGCAGCAAACCTCAACCTTTAGAGAACATTTGGATTGATGAAGCCTCTCCCAAATCCAGTGTACCTGTCACTGAACCTCAACAACCTCTCAGTGATGAGGAGGACTTGAGTTACACTAACTCTCATCTCACTTTTGAACAAATAGCGGAAAACGCAAAAAAATTACATGAACGCATGATGGCTGAATCCGAATCTGAATCCGATGACAATGGTATGCAGTGCAATTGTGACTTCAACAACTGCACATGTCTTAAATCTTATTATGAATATCTTGCACATGACTTTGAAGAGTTGGATTTTAGTGTAGACTAG
Protein sequence

>Msa0732720

MVWVKTKKRVHVNGIATSWKVARVEGRGRPSLKSISNSEEENASFEVDEGTGVPSPKPSSSATKPQQPPPPIDSPLPSDRSKRKKRKTATRTNRQSPPERRLRKAKKEMPLRVRSKGAGKSRVESISKLFSSSDHNILVGGQGSNWELSSFERGKSISDSSKPQPLKFSDQQNVIAGGQRSNERGGKSISGSSKPQPLENIWIDEASPKSSVPVTEPQQPLSDEEDLSYTNSHLTFEQIAENAKKLHERMMAESESESDDNGMQCNCDFNNCTCLKSYYEYLAHDFEELDFSVD*