Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0733440 | XP_003615475.1 | 98.765 | 486 | 5 | 1 | 4 | 488 | 3 | 488 | 0.0 | 985 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0733440 | G7K649 | 98.765 | 486 | 5 | 1 | 4 | 488 | 3 | 488 | 0.0 | 985 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0733440 | Msa0774580 | 0.845500 | 3.906683e-59 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0733440 | MtrunA17_Chr5g0428701 | 98.765 | 486 | 5 | 1 | 4 | 488 | 3 | 488 | 0.0 | 985 |
| Msa0733440 | MtrunA17_Chr3g0128451 | 88.174 | 482 | 55 | 2 | 9 | 488 | 3 | 484 | 0.0 | 864 |
| Msa0733440 | MtrunA17_Chr7g0245501 | 69.703 | 472 | 108 | 5 | 24 | 488 | 45 | 488 | 0.0 | 654 |
| Msa0733440 | MtrunA17_Chr4g0057181 | 58.576 | 309 | 96 | 8 | 167 | 468 | 24 | 307 | 5.93e-108 | 324 |
| Msa0733440 | MtrunA17_Chr4g0057191 | 57.983 | 238 | 92 | 3 | 43 | 279 | 24 | 254 | 2.17e-85 | 263 |
| Msa0733440 | MtrunA17_Chr4g0057201 | 58.911 | 202 | 55 | 6 | 293 | 488 | 5 | 184 | 2.37e-67 | 214 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0733440 | AT3G54190.1 | 79.289 | 478 | 86 | 3 | 11 | 488 | 3 | 467 | 0.0 | 782 |
| Msa0733440 | AT2G38630.1 | 77.662 | 479 | 91 | 4 | 11 | 488 | 4 | 467 | 0.0 | 761 |
| Msa0733440 | AT2G38630.2 | 80.051 | 391 | 73 | 2 | 11 | 400 | 4 | 390 | 0.0 | 652 |
| Msa0733440 | AT2G38630.3 | 74.769 | 325 | 74 | 4 | 11 | 334 | 4 | 321 | 8.53e-173 | 489 |
Find 128 sgRNAs with CRISPR-Local
Find 337 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTAACTGTGCTCCTTATTC+TGG | 0.142146 | 5_1:-46735011 | None:intergenic |
| CTGACCTTGTGATTTCTTAT+TGG | 0.143621 | 5_1:+46735151 | Msa0733440:three_prime_UTR |
| GAAATTCTGAGTTTGAAATT+TGG | 0.195479 | 5_1:-46730604 | None:intergenic |
| GGTGGTGGTGGCAGCGGTGG+TGG | 0.221411 | 5_1:+46730667 | Msa0733440:CDS |
| GTCCTTGTCACTTACAATTT+AGG | 0.232905 | 5_1:+46735285 | Msa0733440:three_prime_UTR |
| GTAGAGTTTGATGATGTAAA+TGG | 0.288059 | 5_1:+46733474 | Msa0733440:CDS |
| CGCTACAATTTCAATAATCT+TGG | 0.304621 | 5_1:-46732865 | None:intergenic |
| TGAGTTTGAAATTTGGATCT+AGG | 0.317112 | 5_1:-46730597 | None:intergenic |
| ACTAAAATATTTACCTATCC+TGG | 0.325125 | 5_1:-46733518 | None:intergenic |
| AATTACATACATCAAGGATT+TGG | 0.331971 | 5_1:-46734100 | None:intergenic |
| ACGATGGAAGAAGGACCTTT+TGG | 0.333777 | 5_1:-46732819 | None:intergenic |
| GGTCGTGGTGGTGCCGGTGA+TGG | 0.335031 | 5_1:+46730754 | Msa0733440:CDS |
| GAAAGCAGGACTCCAGAATA+AGG | 0.350284 | 5_1:+46734999 | Msa0733440:CDS |
| GGTGGTGGTGGTGGCAGCGG+TGG | 0.359272 | 5_1:+46730664 | Msa0733440:CDS |
| ACTAAACCCACGAACACTTT+TGG | 0.362386 | 5_1:-46730821 | None:intergenic |
| CAAGAAGCATATCCTTTCAT+TGG | 0.363629 | 5_1:-46733095 | None:intergenic |
| TAAAATGTTGCTGATATTGA+TGG | 0.364645 | 5_1:-46734870 | None:intergenic |
| ATGGGTTTATCAACAGTGTT+AGG | 0.376927 | 5_1:+46730773 | Msa0733440:CDS |
| CCCTCAGAAGCTCTCATAGA+AGG | 0.384765 | 5_1:-46735224 | None:intergenic |
| TGAAATGAAATGAAATGAAA+TGG | 0.384969 | 5_1:-46730476 | None:intergenic |
| TGCGGTGACGACTGTTCAAC+TGG | 0.387089 | 5_1:+46734956 | Msa0733440:CDS |
| GTGGTGGTGGCAGCGGTGGT+GGG | 0.392132 | 5_1:+46730668 | Msa0733440:CDS |
| AAGCTTCTTATAACTTCATC+AGG | 0.395989 | 5_1:-46733127 | None:intergenic |
| GTCGTGGTGGTGCCGGTGAT+GGG | 0.402381 | 5_1:+46730755 | Msa0733440:CDS |
| GTGGTGGCAGCGGTGGTGGG+AGG | 0.408068 | 5_1:+46730671 | Msa0733440:CDS |
| GAAATGAAATGAAATGAAAT+GGG | 0.409358 | 5_1:-46730475 | None:intergenic |
| ATGTTGTTTGTGTTGCAATC+AGG | 0.422140 | 5_1:-46734361 | None:intergenic |
| ATTCCGCAATATCCGTTTGA+AGG | 0.430337 | 5_1:+46730864 | Msa0733440:CDS |
| GTAAGTGTCTTGCAAAGATA+AGG | 0.436057 | 5_1:+46734897 | Msa0733440:CDS |
| GAAGGTGGTGGTGGTGGCAG+CGG | 0.438182 | 5_1:+46730661 | Msa0733440:CDS |
| CAGTTGCATTCCTTTGCAAT+GGG | 0.439356 | 5_1:-46734935 | None:intergenic |
| TCGAATCTGAGTCTTTGAAA+TGG | 0.440922 | 5_1:+46733442 | Msa0733440:CDS |
| GAGCACAGTTAGAGAAGCCT+TGG | 0.446199 | 5_1:+46735021 | Msa0733440:CDS |
| ACAATAAATATATGAGATGT+TGG | 0.447171 | 5_1:+46735419 | Msa0733440:three_prime_UTR |
| AAAAGAGCAAATCCAGCATC+TGG | 0.454290 | 5_1:-46733420 | None:intergenic |
| AAGCAAGGTCGTGGTGGTGC+CGG | 0.460182 | 5_1:+46730748 | Msa0733440:CDS |
| CAACTGGTGGCTGTAATTCA+AGG | 0.463270 | 5_1:+46734972 | Msa0733440:CDS |
| TAGAGTTTGATGATGTAAAT+GGG | 0.465900 | 5_1:+46733475 | Msa0733440:CDS |
| GGAACAATTGATTCTCATAC+AGG | 0.466753 | 5_1:-46734255 | None:intergenic |
| CAGTTCTATTTCGAAAGGTC+AGG | 0.466814 | 5_1:-46734276 | None:intergenic |
| TTTATACGGTGAATTGTGAA+TGG | 0.466966 | 5_1:+46730639 | Msa0733440:exon |
| CTTTGAAATGCAGAAGCACC+AGG | 0.469827 | 5_1:+46733215 | Msa0733440:CDS |
| TACAGGCAACAGGCATGGTC+TGG | 0.470678 | 5_1:+46735090 | Msa0733440:CDS |
| TGAATGGAAGGTGGTGGTGG+TGG | 0.472065 | 5_1:+46730655 | Msa0733440:exon |
| GTCCAAGACCTTGTTGTGGC+CGG | 0.473658 | 5_1:+46730707 | Msa0733440:CDS |
| ATGAGATCTATACAGGCAAC+AGG | 0.476395 | 5_1:+46735080 | Msa0733440:CDS |
| CGCCGGCCACAACAAGGTCT+TGG | 0.479424 | 5_1:-46730709 | None:intergenic |
| TTGTGAATGGAAGGTGGTGG+TGG | 0.479959 | 5_1:+46730652 | Msa0733440:exon |
| AGGAGGGTTCAGCCAGATGC+TGG | 0.480217 | 5_1:+46733408 | Msa0733440:CDS |
| GATCGCAATGAGATCTATAC+AGG | 0.483836 | 5_1:+46735073 | Msa0733440:CDS |
| TACATACATCAAGGATTTGG+AGG | 0.487961 | 5_1:-46734097 | None:intergenic |
| TCTGAGTCTTTGAAATGGCC+AGG | 0.492056 | 5_1:+46733447 | Msa0733440:CDS |
| ATTTCTACCAAAAGTGTTCG+TGG | 0.493930 | 5_1:+46730814 | Msa0733440:CDS |
| TGCTATTCCGATGAATAAGA+TGG | 0.497519 | 5_1:-46734016 | None:intergenic |
| CATTCAACCATCTTATTCAT+CGG | 0.499367 | 5_1:+46734009 | Msa0733440:CDS |
| GGTATATACTTACTCAATCC+TGG | 0.499463 | 5_1:-46733233 | None:intergenic |
| GCAGTTGCATTCCTTTGCAA+TGG | 0.503588 | 5_1:-46734936 | None:intergenic |
| AAAATCCTCTCAATAGAAGA+TGG | 0.512260 | 5_1:+46733972 | Msa0733440:CDS |
| TAAGTGTCTTGCAAAGATAA+GGG | 0.513770 | 5_1:+46734898 | Msa0733440:CDS |
| TTTCTACCAAAAGTGTTCGT+GGG | 0.521591 | 5_1:+46730815 | Msa0733440:CDS |
| CTAAAATATTTACCTATCCT+GGG | 0.521778 | 5_1:-46733517 | None:intergenic |
| CTTTCGAGGATCACCTTCTG+TGG | 0.523315 | 5_1:+46734335 | Msa0733440:CDS |
| AGAACTTGTAACTTCTTTCG+AGG | 0.523322 | 5_1:+46734321 | Msa0733440:CDS |
| TATGATACATATGATCCAAA+AGG | 0.524311 | 5_1:+46732804 | Msa0733440:CDS |
| TAATTCAAGGAAGCGAAAGC+AGG | 0.524790 | 5_1:+46734985 | Msa0733440:CDS |
| ATCACAATTCACAACAATCA+AGG | 0.526383 | 5_1:-46735181 | None:intergenic |
| CTCATAGAAGGTGAGGGGTG+AGG | 0.526926 | 5_1:-46735212 | None:intergenic |
| AGGGAAGTTATACTGTATGC+TGG | 0.533503 | 5_1:+46735368 | Msa0733440:three_prime_UTR |
| GAGTCATTGTCTGAAGGAAA+TGG | 0.537465 | 5_1:+46734439 | Msa0733440:CDS |
| AGAAGGTGAGGGGTGAGGAC+AGG | 0.538734 | 5_1:-46735207 | None:intergenic |
| ACCTTCTATGAGAGCTTCTG+AGG | 0.544294 | 5_1:+46735223 | Msa0733440:three_prime_UTR |
| ACCTTGTTGTGGCCGGCGTG+TGG | 0.544995 | 5_1:+46730714 | Msa0733440:CDS |
| AATGGCAATACGATGGAAGA+AGG | 0.548928 | 5_1:-46732828 | None:intergenic |
| TCCCTCTAGCAGCATATACA+AGG | 0.555060 | 5_1:+46733628 | Msa0733440:intron |
| GTTGGATAATGTTTGCGTCC+CGG | 0.555585 | 5_1:+46735437 | Msa0733440:three_prime_UTR |
| TTGTTGTGGCCGGCGTGTGG+TGG | 0.563437 | 5_1:+46730717 | Msa0733440:CDS |
| TGAGAAAAGGAACCTTCAAA+CGG | 0.564827 | 5_1:-46730876 | None:intergenic |
| GCGAAGAAGAAGCAAGGTCG+TGG | 0.567056 | 5_1:+46730739 | Msa0733440:CDS |
| ATCTATACAGGCAACAGGCA+TGG | 0.569220 | 5_1:+46735085 | Msa0733440:CDS |
| TCATCAAACTCTACAAAACC+TGG | 0.569346 | 5_1:-46733465 | None:intergenic |
| TACAGGAAAATAAATGCAGA+TGG | 0.569436 | 5_1:-46734238 | None:intergenic |
| GAAGCTCTCATAGAAGGTGA+GGG | 0.569964 | 5_1:-46735218 | None:intergenic |
| TGACATACTCTGCCCAGGAT+AGG | 0.571913 | 5_1:+46733505 | Msa0733440:CDS |
| TAATAGCTTTCCCATTGCAA+AGG | 0.572720 | 5_1:+46734925 | Msa0733440:CDS |
| AAGAGCAGTAATGTCTTCCA+AGG | 0.582856 | 5_1:-46735038 | None:intergenic |
| CAGTACCATCTTCTATTGAG+AGG | 0.585743 | 5_1:-46733977 | None:intergenic |
| AGAAGCTCTCATAGAAGGTG+AGG | 0.589403 | 5_1:-46735219 | None:intergenic |
| ATGTACAAGAGATTAAGATC+AGG | 0.590315 | 5_1:+46733699 | Msa0733440:CDS |
| CACACACACCAGATTGTGCA+AGG | 0.591742 | 5_1:-46732908 | None:intergenic |
| TACGGTGAATTGTGAATGGA+AGG | 0.593229 | 5_1:+46730643 | Msa0733440:exon |
| TTTCAAAGAACTGTAACTGT+CGG | 0.596748 | 5_1:-46733200 | None:intergenic |
| AGCCACAGTTCTATTTCGAA+AGG | 0.602024 | 5_1:-46734281 | None:intergenic |
| GTGGCTGTGTGGAACTTCCG+TGG | 0.603784 | 5_1:+46734298 | Msa0733440:CDS |
| GCTTACGGAAGTTAGCAAAA+CGG | 0.605021 | 5_1:+46734204 | Msa0733440:CDS |
| TAAATCAACAACATGATCCC+CGG | 0.608013 | 5_1:-46733921 | None:intergenic |
| AGTACTGACATACTCTGCCC+AGG | 0.608287 | 5_1:+46733500 | Msa0733440:CDS |
| CATATACATAACAAGTGACC+AGG | 0.608793 | 5_1:+46734381 | Msa0733440:CDS |
| AGTATGATATGATGAGATCC+TGG | 0.609520 | 5_1:-46734399 | None:intergenic |
| TGCAATCAGGATGCCACAGA+AGG | 0.609682 | 5_1:-46734348 | None:intergenic |
| ACCACACGCCGGCCACAACA+AGG | 0.612090 | 5_1:-46730715 | None:intergenic |
| ATTTAGGCATGTTCTGCATG+TGG | 0.612582 | 5_1:+46735301 | Msa0733440:three_prime_UTR |
| ACTGTTGATAAACCCATCAC+CGG | 0.614575 | 5_1:-46730767 | None:intergenic |
| GAACCTTCAAACGGATATTG+CGG | 0.621364 | 5_1:-46730867 | None:intergenic |
| CAAGATTATTGAAATTGTAG+CGG | 0.621428 | 5_1:+46732866 | Msa0733440:CDS |
| CCTTCTATGAGAGCTTCTGA+GGG | 0.622904 | 5_1:+46735224 | Msa0733440:three_prime_UTR |
| GGCATGGTCTGGTTCATGTG+TGG | 0.636460 | 5_1:+46735101 | Msa0733440:CDS |
| CAAGCCAATAAGAAATCACA+AGG | 0.640491 | 5_1:-46735155 | None:intergenic |
| TGCCTAAATTGTAAGTGACA+AGG | 0.651042 | 5_1:-46735287 | None:intergenic |
| GTGGTGGCGAAGAAGAAGCA+AGG | 0.655830 | 5_1:+46730733 | Msa0733440:CDS |
| AAATGAAATGAAATGAAATG+GGG | 0.656724 | 5_1:-46730474 | None:intergenic |
| TCTGATGAGTCATTGTCTGA+AGG | 0.658222 | 5_1:+46734433 | Msa0733440:CDS |
| GAATTGTGAATGGAAGGTGG+TGG | 0.658715 | 5_1:+46730649 | Msa0733440:exon |
| TCTCATCATATCATACTGCA+AGG | 0.658840 | 5_1:+46734405 | Msa0733440:CDS |
| TCTTATTCATCGGAATAGCA+AGG | 0.665657 | 5_1:+46734019 | Msa0733440:CDS |
| TTGCTGCAGAGACCAATGAA+AGG | 0.677144 | 5_1:+46733083 | Msa0733440:intron |
| AAGAAGAAGCAAGGTCGTGG+TGG | 0.677858 | 5_1:+46730742 | Msa0733440:CDS |
| GAAATAGAACTGTGGCTGTG+TGG | 0.679446 | 5_1:+46734287 | Msa0733440:CDS |
| TCTTCTTCGCCACCACACGC+CGG | 0.681323 | 5_1:-46730726 | None:intergenic |
| AAGCTCTCATAGAAGGTGAG+GGG | 0.683339 | 5_1:-46735217 | None:intergenic |
| TCAAGTCCAAGACCTTGTTG+TGG | 0.684451 | 5_1:+46730703 | Msa0733440:CDS |
| AAGAAGTTACAAGTTCTCCA+CGG | 0.690206 | 5_1:-46734315 | None:intergenic |
| GGTGACGACTGTTCAACTGG+TGG | 0.696358 | 5_1:+46734959 | Msa0733440:CDS |
| ATTGCAAAGGAATGCAACTG+CGG | 0.699889 | 5_1:+46734938 | Msa0733440:CDS |
| GGTGAATTGTGAATGGAAGG+TGG | 0.702177 | 5_1:+46730646 | Msa0733440:exon |
| GACCTTTCGAAATAGAACTG+TGG | 0.709860 | 5_1:+46734279 | Msa0733440:CDS |
| ACACACACCAGATTGTGCAA+GGG | 0.713361 | 5_1:-46732907 | None:intergenic |
| TATTCATCGGAATAGCAAGG+TGG | 0.740005 | 5_1:+46734022 | Msa0733440:CDS |
| GTGTGTGCAGCATTTAACCG+AGG | 0.786396 | 5_1:+46732924 | Msa0733440:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GTTAAAAAAATTTAATTGAT+AGG | + | chr5_1:46732202-46732221 | Msa0733440:intron | 10.0% |
| !!! | ATCTAGGTTTTTTAAATTTT+TGG | - | chr5_1:46730584-46730603 | None:intergenic | 15.0% |
| !!! | TTTTAAATCTAAATCTATGA+TGG | + | chr5_1:46730944-46730963 | Msa0733440:intron | 15.0% |
| !! | AACATACTAGAAATAAAAAA+AGG | + | chr5_1:46731897-46731916 | Msa0733440:intron | 15.0% |
| !! | ACAAATTCAATAATTAATGT+AGG | + | chr5_1:46732120-46732139 | Msa0733440:intron | 15.0% |
| !!! | ATAATAAATATTGATTTGCA+CGG | - | chr5_1:46732309-46732328 | None:intergenic | 15.0% |
| !! | TATATTTACAAAATTCTTGA+TGG | + | chr5_1:46733570-46733589 | Msa0733440:intron | 15.0% |
| !! | GTAATTAAAAGTAAGATATA+TGG | - | chr5_1:46734164-46734183 | None:intergenic | 15.0% |
| !! | AATAATTTGGAAAGAAAAAT+GGG | - | chr5_1:46734499-46734518 | None:intergenic | 15.0% |
| !! | AAATAATTTGGAAAGAAAAA+TGG | - | chr5_1:46734500-46734519 | None:intergenic | 15.0% |
| !! | GAGACAAAATAAAAATAATT+TGG | - | chr5_1:46734512-46734531 | None:intergenic | 15.0% |
| !!! | ATCAATATTTTTTTTTTGAG+AGG | + | chr5_1:46734571-46734590 | Msa0733440:intron | 15.0% |
| !!! | TGTATGTTTTTTATTTTTTG+AGG | + | chr5_1:46735348-46735367 | Msa0733440:three_prime_UTR | 15.0% |
| !!! | GTATGTTTTTTATTTTTTGA+GGG | + | chr5_1:46735349-46735368 | Msa0733440:three_prime_UTR | 15.0% |
| !! | AAATGAAATGAAATGAAATG+GGG | - | chr5_1:46730477-46730496 | None:intergenic | 20.0% |
| !! | GAAATGAAATGAAATGAAAT+GGG | - | chr5_1:46730478-46730497 | None:intergenic | 20.0% |
| !! | TGAAATGAAATGAAATGAAA+TGG | - | chr5_1:46730479-46730498 | None:intergenic | 20.0% |
| !!! | AGGTTTTTTAAATTTTTGGT+GGG | - | chr5_1:46730580-46730599 | None:intergenic | 20.0% |
| !!! | TAGGTTTTTTAAATTTTTGG+TGG | - | chr5_1:46730581-46730600 | None:intergenic | 20.0% |
| !!! | AAACTCAGAATTTCAATTTT+AGG | + | chr5_1:46730613-46730632 | Msa0733440:five_prime_UTR | 20.0% |
| !!! | AACTCAGAATTTCAATTTTA+GGG | + | chr5_1:46730614-46730633 | Msa0733440:five_prime_UTR | 20.0% |
| !!! | TCAATTTTAGGGTTTTTATA+CGG | + | chr5_1:46730625-46730644 | Msa0733440:five_prime_UTR | 20.0% |
| !! | CATTAATAATTGTCATAAGA+TGG | + | chr5_1:46731008-46731027 | Msa0733440:intron | 20.0% |
| !!! | TTTTTTTTTTTTGCTTGTAG+AGG | + | chr5_1:46731148-46731167 | Msa0733440:intron | 20.0% |
| !!! | TTTTTTTTTTTGCTTGTAGA+GGG | + | chr5_1:46731149-46731168 | Msa0733440:intron | 20.0% |
| !!! | GATGATTTTTTGTATGTTAA+AGG | + | chr5_1:46731227-46731246 | Msa0733440:intron | 20.0% |
| !!! | GCAATCTGTAATAATTTTTT+AGG | + | chr5_1:46731491-46731510 | Msa0733440:intron | 20.0% |
| !! | ACAAATTCGATAATTAATGT+AGG | + | chr5_1:46731958-46731977 | Msa0733440:intron | 20.0% |
| !! | CAAATTCGATAATTAATGTA+GGG | + | chr5_1:46731959-46731978 | Msa0733440:intron | 20.0% |
| !! | ACAAATTCGATAATTAATGT+AGG | + | chr5_1:46731958-46731977 | Msa0733440:intron | 20.0% |
| !! | CAAATTCGATAATTAATGTA+GGG | + | chr5_1:46731959-46731978 | Msa0733440:intron | 20.0% |
| !!! | TAATAAATATTGATTTGCAC+GGG | - | chr5_1:46732308-46732327 | None:intergenic | 20.0% |
| !!! | AGATTTTTGGAAAAATGATA+TGG | - | chr5_1:46732443-46732462 | None:intergenic | 20.0% |
| !! | TAATCAATTCTGTTAAATAG+CGG | + | chr5_1:46732520-46732539 | Msa0733440:intron | 20.0% |
| !! | ATATAAATCAGACATAAGTA+GGG | - | chr5_1:46732770-46732789 | None:intergenic | 20.0% |
| !! | AATATAAATCAGACATAAGT+AGG | - | chr5_1:46732771-46732790 | None:intergenic | 20.0% |
| !!! | TGTCTGATTTATATTTTTAC+AGG | + | chr5_1:46732776-46732795 | Msa0733440:intron | 20.0% |
| !! | TAGGAGTTATAAAATAATAG+AGG | - | chr5_1:46733257-46733276 | None:intergenic | 20.0% |
| !!! | TGTTTTGTTTAGTTTGTTTT+TGG | + | chr5_1:46733854-46733873 | Msa0733440:intron | 20.0% |
| !!! | GTTTTGTTTAGTTTGTTTTT+GGG | + | chr5_1:46733855-46733874 | Msa0733440:intron | 20.0% |
| !!! | TTTTGTTTAGTTTGTTTTTG+GGG | + | chr5_1:46733856-46733875 | Msa0733440:intron | 20.0% |
| !!! | TATGATTTTTTTTATCAGTC+CGG | + | chr5_1:46733902-46733921 | Msa0733440:intron | 20.0% |
| !!! | GTAATTTTCTCATTTTTACA+TGG | + | chr5_1:46734117-46734136 | Msa0733440:intron | 20.0% |
| !! | TTAAAAGTAAGATATATGGA+TGG | - | chr5_1:46734160-46734179 | None:intergenic | 20.0% |
| !!! | TCTTACTTTTAATTACCTTT+AGG | + | chr5_1:46734168-46734187 | Msa0733440:intron | 20.0% |
| !! | ATAATTTGGAAAGAAAAATG+GGG | - | chr5_1:46734498-46734517 | None:intergenic | 20.0% |
| !!! | ATTTGTATCATTTGTTGTAA+AGG | + | chr5_1:46734799-46734818 | Msa0733440:intron | 20.0% |
| !! | ACAATAAATATATGAGATGT+TGG | + | chr5_1:46735419-46735438 | Msa0733440:three_prime_UTR | 20.0% |
| !! | GAAATTCTGAGTTTGAAATT+TGG | - | chr5_1:46730607-46730626 | None:intergenic | 25.0% |
| ! | AAAGAATTGAGATTGAGAAA+AGG | - | chr5_1:46730892-46730911 | None:intergenic | 25.0% |
| !!! | GGTTTTTTTTTATTTGCATG+TGG | + | chr5_1:46730965-46730984 | Msa0733440:intron | 25.0% |
| !! | TATTTATGTTGAAGTTTTGC+TGG | + | chr5_1:46731094-46731113 | Msa0733440:intron | 25.0% |
| !! | ATTTATGTTGAAGTTTTGCT+GGG | + | chr5_1:46731095-46731114 | Msa0733440:intron | 25.0% |
| ! | ATCACAATTCAAATTCTACA+GGG | - | chr5_1:46731124-46731143 | None:intergenic | 25.0% |
| ! | AATCACAATTCAAATTCTAC+AGG | - | chr5_1:46731125-46731144 | None:intergenic | 25.0% |
| ! | GATTGTATGAGTAATGTTAT+TGG | + | chr5_1:46731183-46731202 | Msa0733440:intron | 25.0% |
| !!! | GAGTAATGTTATTGGTTTAT+AGG | + | chr5_1:46731191-46731210 | Msa0733440:intron | 25.0% |
| ! | GCAATCTGTAATAATTTCTT+AGG | + | chr5_1:46731301-46731320 | Msa0733440:intron | 25.0% |
| ! | GCAATCTGTAATAATTTCTT+TGG | + | chr5_1:46731301-46731320 | Msa0733440:intron | 25.0% |
| !! | GCAATCTGTAATAATTTTTC+AGG | + | chr5_1:46731555-46731574 | Msa0733440:intron | 25.0% |
| ! | AAGGAGATAAAAATTCGTTA+TGG | + | chr5_1:46731916-46731935 | Msa0733440:intron | 25.0% |
| ! | CAATAATTAATGTAGGAAAG+CGG | + | chr5_1:46732127-46732146 | Msa0733440:intron | 25.0% |
| ! | ATCTTGTTCAATGTTATAGA+TGG | + | chr5_1:46732327-46732346 | Msa0733440:intron | 25.0% |
| ! | AAATCAGTGTTGTCAAATAT+CGG | - | chr5_1:46732473-46732492 | None:intergenic | 25.0% |
| ! | TATAAATCAGACATAAGTAG+GGG | - | chr5_1:46732769-46732788 | None:intergenic | 25.0% |
| ! | TATGATACATATGATCCAAA+AGG | + | chr5_1:46732804-46732823 | Msa0733440:CDS | 25.0% |
| !!! | TATTGCCATTTTTGAGAAAA+AGG | + | chr5_1:46732841-46732860 | Msa0733440:CDS | 25.0% |
| ! | CAAGATTATTGAAATTGTAG+CGG | + | chr5_1:46732866-46732885 | Msa0733440:CDS | 25.0% |
| !!! | AGATATTTTAGCATAGAACA+GGG | - | chr5_1:46733370-46733389 | None:intergenic | 25.0% |
| !!! | TAGAGTTTGATGATGTAAAT+GGG | + | chr5_1:46733475-46733494 | Msa0733440:CDS | 25.0% |
| ! | CTAAAATATTTACCTATCCT+GGG | - | chr5_1:46733520-46733539 | None:intergenic | 25.0% |
| ! | ACTAAAATATTTACCTATCC+TGG | - | chr5_1:46733521-46733540 | None:intergenic | 25.0% |
| ! | ATTTACAAAATTCTTGATGG+TGG | + | chr5_1:46733573-46733592 | Msa0733440:intron | 25.0% |
| ! | AACAAGAATGAAGTTGTATA+AGG | - | chr5_1:46733882-46733901 | None:intergenic | 25.0% |
| !!! | ATGATTTTTTTTATCAGTCC+GGG | + | chr5_1:46733903-46733922 | Msa0733440:intron | 25.0% |
| ! | AATTACATACATCAAGGATT+TGG | - | chr5_1:46734103-46734122 | None:intergenic | 25.0% |
| ! | TGAGAAAATTACATACATCA+AGG | - | chr5_1:46734109-46734128 | None:intergenic | 25.0% |
| !!! | ATTTTTTTTTTGAGAGGTGT+TGG | + | chr5_1:46734577-46734596 | Msa0733440:intron | 25.0% |
| !! | AGTACTTTAGTTTATCTCAT+AGG | + | chr5_1:46734625-46734644 | Msa0733440:intron | 25.0% |
| ! | TGAAAAATTATATCTCTGTC+AGG | - | chr5_1:46734764-46734783 | None:intergenic | 25.0% |
| ! | TAAAATGTTGCTGATATTGA+TGG | - | chr5_1:46734873-46734892 | None:intergenic | 25.0% |
| !!! | AATATCAGCAACATTTTAAC+TGG | + | chr5_1:46734875-46734894 | Msa0733440:CDS | 25.0% |
| ! | TGAGTTTGAAATTTGGATCT+AGG | - | chr5_1:46730600-46730619 | None:intergenic | 30.0% |
| TTTATACGGTGAATTGTGAA+TGG | + | chr5_1:46730639-46730658 | Msa0733440:exon | 30.0% | |
| TAGGGTTTGATTGTTTAGTT+TGG | + | chr5_1:46731063-46731082 | Msa0733440:intron | 30.0% | |
| AATGGTTATTGTGATCTTAC+TGG | + | chr5_1:46731592-46731611 | Msa0733440:intron | 30.0% | |
| GCAACTTAAATGTTTGCTTT+AGG | + | chr5_1:46731658-46731677 | Msa0733440:intron | 30.0% | |
| AAAAATTCGTTATGGAAGAG+AGG | + | chr5_1:46731924-46731943 | Msa0733440:intron | 30.0% | |
| TTAATTGATAGGATCAGTGT+TGG | + | chr5_1:46732213-46732232 | Msa0733440:intron | 30.0% | |
| TTGTTCAATGTTATAGATGG+CGG | + | chr5_1:46732330-46732349 | Msa0733440:intron | 30.0% | |
| ! | ATTTTTCCAAAAATCTGCCA+TGG | + | chr5_1:46732447-46732466 | Msa0733440:intron | 30.0% |
| ATAAATCAGACATAAGTAGG+GGG | - | chr5_1:46732768-46732787 | None:intergenic | 30.0% | |
| ! | TTGGACCTTTTTCTCAAAAA+TGG | - | chr5_1:46732849-46732868 | None:intergenic | 30.0% |
| CGCTACAATTTCAATAATCT+TGG | - | chr5_1:46732868-46732887 | None:intergenic | 30.0% | |
| AACATAAAATGCCGAAAACA+AGG | - | chr5_1:46732964-46732983 | None:intergenic | 30.0% | |
| AAGCTTCTTATAACTTCATC+AGG | - | chr5_1:46733130-46733149 | None:intergenic | 30.0% | |
| TTTCAAAGAACTGTAACTGT+CGG | - | chr5_1:46733203-46733222 | None:intergenic | 30.0% | |
| !!! | GAGATATTTTAGCATAGAAC+AGG | - | chr5_1:46733371-46733390 | None:intergenic | 30.0% |
| ! | CTCTGTTTTCCAGATATATA+AGG | + | chr5_1:46733388-46733407 | Msa0733440:intron | 30.0% |
| ! | TGTTTTCCAGATATATAAGG+AGG | + | chr5_1:46733391-46733410 | Msa0733440:intron | 30.0% |
| ! | GTTTTCCAGATATATAAGGA+GGG | + | chr5_1:46733392-46733411 | Msa0733440:intron | 30.0% |
| !! | GTAGAGTTTGATGATGTAAA+TGG | + | chr5_1:46733474-46733493 | Msa0733440:CDS | 30.0% |
| ATGTACAAGAGATTAAGATC+AGG | + | chr5_1:46733699-46733718 | Msa0733440:CDS | 30.0% | |
| TAACATAAACCACAACTACA+TGG | - | chr5_1:46733772-46733791 | None:intergenic | 30.0% | |
| CAAGCATTAAAACATGTGAA+GGG | - | chr5_1:46733817-46733836 | None:intergenic | 30.0% | |
| TCAAGCATTAAAACATGTGA+AGG | - | chr5_1:46733818-46733837 | None:intergenic | 30.0% | |
| !!! | TGATTTTTTTTATCAGTCCG+GGG | + | chr5_1:46733904-46733923 | Msa0733440:intron | 30.0% |
| !! | CTATTGAGAGGATTTTTAGA+GGG | - | chr5_1:46733968-46733987 | None:intergenic | 30.0% |
| !! | TCTATTGAGAGGATTTTTAG+AGG | - | chr5_1:46733969-46733988 | None:intergenic | 30.0% |
| AAAATCCTCTCAATAGAAGA+TGG | + | chr5_1:46733972-46733991 | Msa0733440:CDS | 30.0% | |
| CATTCAACCATCTTATTCAT+CGG | + | chr5_1:46734009-46734028 | Msa0733440:CDS | 30.0% | |
| TACAGGAAAATAAATGCAGA+TGG | - | chr5_1:46734241-46734260 | None:intergenic | 30.0% | |
| ! | ACTGTTGTTTGAAATTGAAC+TGG | + | chr5_1:46734705-46734724 | Msa0733440:intron | 30.0% |
| ! | TGTTTGAAATTGAACTGGAA+TGG | + | chr5_1:46734710-46734729 | Msa0733440:intron | 30.0% |
| !!! | ATTTCTGCTTTTTCATACAG+CGG | + | chr5_1:46734844-46734863 | Msa0733440:intron | 30.0% |
| ATCACAATTCACAACAATCA+AGG | - | chr5_1:46735184-46735203 | None:intergenic | 30.0% | |
| ATGGGTTTATCAACAGTGTT+AGG | + | chr5_1:46730773-46730792 | Msa0733440:CDS | 35.0% | |
| !! | ATTTCTACCAAAAGTGTTCG+TGG | + | chr5_1:46730814-46730833 | Msa0733440:CDS | 35.0% |
| !! | TTTCTACCAAAAGTGTTCGT+GGG | + | chr5_1:46730815-46730834 | Msa0733440:CDS | 35.0% |
| TGAGAAAAGGAACCTTCAAA+CGG | - | chr5_1:46730879-46730898 | None:intergenic | 35.0% | |
| TTGTATGTTAAAGGACGAGT+CGG | + | chr5_1:46731236-46731255 | Msa0733440:intron | 35.0% | |
| AAATCACGAGCGAAATCATA+AGG | - | chr5_1:46731275-46731294 | None:intergenic | 35.0% | |
| ACATTTGCACATGAGACTAT+GGG | + | chr5_1:46731687-46731706 | Msa0733440:intron | 35.0% | |
| AGACTATGGGATGTTTAATG+TGG | + | chr5_1:46731700-46731719 | Msa0733440:intron | 35.0% | |
| ATGTGGATCTGTAATTGCTT+AGG | + | chr5_1:46731717-46731736 | Msa0733440:intron | 35.0% | |
| CGATAATTAATGTAGGGAAG+AGG | + | chr5_1:46731965-46731984 | Msa0733440:intron | 35.0% | |
| TGTAGGGAAGAGGAAAATTA+TGG | + | chr5_1:46731975-46731994 | Msa0733440:intron | 35.0% | |
| GTAGGGAAGAGGAAAATTAT+GGG | + | chr5_1:46731976-46731995 | Msa0733440:intron | 35.0% | |
| CGATAATTAATGTAGGGAAG+AGG | + | chr5_1:46731965-46731984 | Msa0733440:intron | 35.0% | |
| TGTAGGGAAGAGGAAAATTA+TGG | + | chr5_1:46731975-46731994 | Msa0733440:intron | 35.0% | |
| GTAGGGAAGAGGAAAATTAT+GGG | + | chr5_1:46731976-46731995 | Msa0733440:intron | 35.0% | |
| TGTAGGAAAGCGGAAAATTA+TGG | + | chr5_1:46732137-46732156 | Msa0733440:intron | 35.0% | |
| GTAGGAAAGCGGAAAATTAT+GGG | + | chr5_1:46732138-46732157 | Msa0733440:intron | 35.0% | |
| !! | ATATTGATTTGCACGGGTAT+TGG | - | chr5_1:46732302-46732321 | None:intergenic | 35.0% |
| AAAATGATATGGCCAATTCG+CGG | - | chr5_1:46732432-46732451 | None:intergenic | 35.0% | |
| TTGTTTCGTGATACACTGTT+TGG | + | chr5_1:46732574-46732593 | Msa0733440:intron | 35.0% | |
| TCTATAGAATTGTTGCGTAG+TGG | + | chr5_1:46732630-46732649 | Msa0733440:intron | 35.0% | |
| TCTCAAAAATGGCAATACGA+TGG | - | chr5_1:46732838-46732857 | None:intergenic | 35.0% | |
| ! | CAAGAAGCATATCCTTTCAT+TGG | - | chr5_1:46733098-46733117 | None:intergenic | 35.0% |
| GGTATATACTTACTCAATCC+TGG | - | chr5_1:46733236-46733255 | None:intergenic | 35.0% | |
| !!! | GTGTCTTTTTTTGTTGAGCA+TGG | - | chr5_1:46733290-46733309 | None:intergenic | 35.0% |
| ! | TCGAATCTGAGTCTTTGAAA+TGG | + | chr5_1:46733442-46733461 | Msa0733440:CDS | 35.0% |
| TCATCAAACTCTACAAAACC+TGG | - | chr5_1:46733468-46733487 | None:intergenic | 35.0% | |
| ! | TACATGGTAGCGTTGTATAT+TGG | - | chr5_1:46733756-46733775 | None:intergenic | 35.0% |
| TAAATCAACAACATGATCCC+CGG | - | chr5_1:46733924-46733943 | None:intergenic | 35.0% | |
| TGCTATTCCGATGAATAAGA+TGG | - | chr5_1:46734019-46734038 | None:intergenic | 35.0% | |
| TCTTATTCATCGGAATAGCA+AGG | + | chr5_1:46734019-46734038 | Msa0733440:CDS | 35.0% | |
| TACATACATCAAGGATTTGG+AGG | - | chr5_1:46734100-46734119 | None:intergenic | 35.0% | |
| ! | GGAACAATTGATTCTCATAC+AGG | - | chr5_1:46734258-46734277 | None:intergenic | 35.0% |
| AAGAAGTTACAAGTTCTCCA+CGG | - | chr5_1:46734318-46734337 | None:intergenic | 35.0% | |
| AGAACTTGTAACTTCTTTCG+AGG | + | chr5_1:46734321-46734340 | Msa0733440:CDS | 35.0% | |
| ! | ATGTTGTTTGTGTTGCAATC+AGG | - | chr5_1:46734364-46734383 | None:intergenic | 35.0% |
| CATATACATAACAAGTGACC+AGG | + | chr5_1:46734381-46734400 | Msa0733440:CDS | 35.0% | |
| AGTATGATATGATGAGATCC+TGG | - | chr5_1:46734402-46734421 | None:intergenic | 35.0% | |
| TCTCATCATATCATACTGCA+AGG | + | chr5_1:46734405-46734424 | Msa0733440:CDS | 35.0% | |
| !!! | TTTCTGCTTTTTCATACAGC+GGG | + | chr5_1:46734845-46734864 | Msa0733440:intron | 35.0% |
| TAATAGCTTTCCCATTGCAA+AGG | + | chr5_1:46734925-46734944 | Msa0733440:CDS | 35.0% | |
| CTGACCTTGTGATTTCTTAT+TGG | + | chr5_1:46735151-46735170 | Msa0733440:three_prime_UTR | 35.0% | |
| CAAGCCAATAAGAAATCACA+AGG | - | chr5_1:46735158-46735177 | None:intergenic | 35.0% | |
| ! | GTCCTTGTCACTTACAATTT+AGG | + | chr5_1:46735285-46735304 | Msa0733440:three_prime_UTR | 35.0% |
| TGCCTAAATTGTAAGTGACA+AGG | - | chr5_1:46735290-46735309 | None:intergenic | 35.0% | |
| TACGGTGAATTGTGAATGGA+AGG | + | chr5_1:46730643-46730662 | Msa0733440:exon | 40.0% | |
| ! | ACTGTTGATAAACCCATCAC+CGG | - | chr5_1:46730770-46730789 | None:intergenic | 40.0% |
| ! | ACTAAACCCACGAACACTTT+TGG | - | chr5_1:46730824-46730843 | None:intergenic | 40.0% |
| ATTCCGCAATATCCGTTTGA+AGG | + | chr5_1:46730864-46730883 | Msa0733440:CDS | 40.0% | |
| GAACCTTCAAACGGATATTG+CGG | - | chr5_1:46730870-46730889 | None:intergenic | 40.0% | |
| CATAGTCTCATGTGCAAATG+TGG | - | chr5_1:46731688-46731707 | None:intergenic | 40.0% | |
| CACATTTGCACATGAGACTA+TGG | + | chr5_1:46731686-46731705 | Msa0733440:intron | 40.0% | |
| ! | CCTCTTTTCTTTCCTTCAGA+GGG | - | chr5_1:46731805-46731824 | None:intergenic | 40.0% |
| ! | CCTCTGAAGGAAAGAAAAGA+GGG | + | chr5_1:46731803-46731822 | Msa0733440:intron | 40.0% |
| GGAAGAGGAAAATTATGGGT+GGG | + | chr5_1:46731980-46731999 | Msa0733440:intron | 40.0% | |
| ! | AGTTTTCCTTTTCCGAAACG+AGG | + | chr5_1:46732003-46732022 | Msa0733440:intron | 40.0% |
| ! | GTTTTCCTTTTCCGAAACGA+GGG | + | chr5_1:46732004-46732023 | Msa0733440:intron | 40.0% |
| ! | TTTTCCTTTTCCGAAACGAG+GGG | + | chr5_1:46732005-46732024 | Msa0733440:intron | 40.0% |
| GGAAGAGGAAAATTATGGGT+GGG | + | chr5_1:46731980-46731999 | Msa0733440:intron | 40.0% | |
| ! | AGTTTTCCTTTTCCGAAACG+AGG | + | chr5_1:46732003-46732022 | Msa0733440:intron | 40.0% |
| ! | GTTTTCCTTTTCCGAAACGA+GGG | + | chr5_1:46732004-46732023 | Msa0733440:intron | 40.0% |
| ! | TTTTCCTTTTCCGAAACGAG+GGG | + | chr5_1:46732005-46732024 | Msa0733440:intron | 40.0% |
| AAAGCGGAAAATTATGGGTG+CGG | + | chr5_1:46732143-46732162 | Msa0733440:intron | 40.0% | |
| TTTCCCGTTTCCTTAAGGAT+GGG | + | chr5_1:46732167-46732186 | Msa0733440:intron | 40.0% | |
| TCTTCCCATCCTTAAGGAAA+CGG | - | chr5_1:46732174-46732193 | None:intergenic | 40.0% | |
| TTTCCTTAAGGATGGGAAGA+GGG | + | chr5_1:46732174-46732193 | Msa0733440:intron | 40.0% | |
| !! | GATAGGATCAGTGTTGGTAA+TGG | + | chr5_1:46732219-46732238 | Msa0733440:intron | 40.0% |
| GTTAAATAGCGGCTATCATG+TGG | + | chr5_1:46732531-46732550 | Msa0733440:intron | 40.0% | |
| TTATCCGTGATTGACAACAC+TGG | + | chr5_1:46732678-46732697 | Msa0733440:intron | 40.0% | |
| TATCCGTGATTGACAACACT+GGG | + | chr5_1:46732679-46732698 | Msa0733440:intron | 40.0% | |
| GTACGGATCTCATAATAGCA+CGG | - | chr5_1:46732724-46732743 | None:intergenic | 40.0% | |
| AGACATAAGTAGGGGGTAAT+GGG | - | chr5_1:46732761-46732780 | None:intergenic | 40.0% | |
| AATGGCAATACGATGGAAGA+AGG | - | chr5_1:46732831-46732850 | None:intergenic | 40.0% | |
| !!! | TACCACTGAAGCCTTGTTTT+CGG | + | chr5_1:46732950-46732969 | Msa0733440:intron | 40.0% |
| TTGTTGAGCATGGAAAACGA+TGG | - | chr5_1:46733280-46733299 | None:intergenic | 40.0% | |
| CTGAACCCTCCTTATATATC+TGG | - | chr5_1:46733400-46733419 | None:intergenic | 40.0% | |
| AAAAGAGCAAATCCAGCATC+TGG | - | chr5_1:46733423-46733442 | None:intergenic | 40.0% | |
| ACCTTGTATATGCTGCTAGA+GGG | - | chr5_1:46733632-46733651 | None:intergenic | 40.0% | |
| !! | AGAGGATTTTTAGAGGGACA+TGG | - | chr5_1:46733962-46733981 | None:intergenic | 40.0% |
| CAGTACCATCTTCTATTGAG+AGG | - | chr5_1:46733980-46733999 | None:intergenic | 40.0% | |
| TATTCATCGGAATAGCAAGG+TGG | + | chr5_1:46734022-46734041 | Msa0733440:CDS | 40.0% | |
| ! | GCTCAAAAGTACGTACCTAA+AGG | - | chr5_1:46734186-46734205 | None:intergenic | 40.0% |
| ! | GGTACGTACTTTTGAGCTTA+CGG | + | chr5_1:46734189-46734208 | Msa0733440:intron | 40.0% |
| GCTTACGGAAGTTAGCAAAA+CGG | + | chr5_1:46734204-46734223 | Msa0733440:CDS | 40.0% | |
| CAGTTCTATTTCGAAAGGTC+AGG | - | chr5_1:46734279-46734298 | None:intergenic | 40.0% | |
| GACCTTTCGAAATAGAACTG+TGG | + | chr5_1:46734279-46734298 | Msa0733440:CDS | 40.0% | |
| AGCCACAGTTCTATTTCGAA+AGG | - | chr5_1:46734284-46734303 | None:intergenic | 40.0% | |
| TCTGATGAGTCATTGTCTGA+AGG | + | chr5_1:46734433-46734452 | Msa0733440:CDS | 40.0% | |
| GAGTCATTGTCTGAAGGAAA+TGG | + | chr5_1:46734439-46734458 | Msa0733440:CDS | 40.0% | |
| CAGTTGCATTCCTTTGCAAT+GGG | - | chr5_1:46734938-46734957 | None:intergenic | 40.0% | |
| ATTGCAAAGGAATGCAACTG+CGG | + | chr5_1:46734938-46734957 | Msa0733440:CDS | 40.0% | |
| TAATTCAAGGAAGCGAAAGC+AGG | + | chr5_1:46734985-46735004 | Msa0733440:CDS | 40.0% | |
| TCTAACTGTGCTCCTTATTC+TGG | - | chr5_1:46735014-46735033 | None:intergenic | 40.0% | |
| AAGAGCAGTAATGTCTTCCA+AGG | - | chr5_1:46735041-46735060 | None:intergenic | 40.0% | |
| GATCGCAATGAGATCTATAC+AGG | + | chr5_1:46735073-46735092 | Msa0733440:CDS | 40.0% | |
| ATGAGATCTATACAGGCAAC+AGG | + | chr5_1:46735080-46735099 | Msa0733440:CDS | 40.0% | |
| ATTTAGGCATGTTCTGCATG+TGG | + | chr5_1:46735301-46735320 | Msa0733440:three_prime_UTR | 40.0% | |
| AGGGAAGTTATACTGTATGC+TGG | + | chr5_1:46735368-46735387 | Msa0733440:three_prime_UTR | 40.0% | |
| GGTGAATTGTGAATGGAAGG+TGG | + | chr5_1:46730646-46730665 | Msa0733440:exon | 45.0% | |
| GAATTGTGAATGGAAGGTGG+TGG | + | chr5_1:46730649-46730668 | Msa0733440:exon | 45.0% | |
| TCAAGTCCAAGACCTTGTTG+TGG | + | chr5_1:46730703-46730722 | Msa0733440:CDS | 45.0% | |
| CAGGTCTGTGTCAATGACAA+TGG | + | chr5_1:46731574-46731593 | Msa0733440:intron | 45.0% | |
| TCAGAGTACGGGATTAGGTT+GGG | - | chr5_1:46731768-46731787 | None:intergenic | 45.0% | |
| ATCAGAGTACGGGATTAGGT+TGG | - | chr5_1:46731769-46731788 | None:intergenic | 45.0% | |
| AGCAATCAGAGTACGGGATT+AGG | - | chr5_1:46731773-46731792 | None:intergenic | 45.0% | |
| AGGTACAGCAATCAGAGTAC+GGG | - | chr5_1:46731779-46731798 | None:intergenic | 45.0% | |
| CAGGTACAGCAATCAGAGTA+CGG | - | chr5_1:46731780-46731799 | None:intergenic | 45.0% | |
| TTCTTTCCTTCAGAGGGATC+AGG | - | chr5_1:46731799-46731818 | None:intergenic | 45.0% | |
| ! | CCCTCTGAAGGAAAGAAAAG+AGG | + | chr5_1:46731802-46731821 | Msa0733440:intron | 45.0% |
| ! | CCCTCTTTTCTTTCCTTCAG+AGG | - | chr5_1:46731806-46731825 | None:intergenic | 45.0% |
| AGTCCAAATTCGAGAGCTGT+AGG | + | chr5_1:46731845-46731864 | Msa0733440:intron | 45.0% | |
| GTCCAAATTCGAGAGCTGTA+GGG | + | chr5_1:46731846-46731865 | Msa0733440:intron | 45.0% | |
| AACCCTACAGCTCTCGAATT+TGG | - | chr5_1:46731851-46731870 | None:intergenic | 45.0% | |
| TCGTTATGGAAGAGAGGAAG+AGG | + | chr5_1:46731930-46731949 | Msa0733440:intron | 45.0% | |
| GGGAAGAGGAAAATTATGGG+TGG | + | chr5_1:46731979-46731998 | Msa0733440:intron | 45.0% | |
| GGGAAGAGGAAAATTATGGG+TGG | + | chr5_1:46731979-46731998 | Msa0733440:intron | 45.0% | |
| AAGCGGAAAATTATGGGTGC+GGG | + | chr5_1:46732144-46732163 | Msa0733440:intron | 45.0% | |
| GTTTCCCGTTTCCTTAAGGA+TGG | + | chr5_1:46732166-46732185 | Msa0733440:intron | 45.0% | |
| CTTCCCATCCTTAAGGAAAC+GGG | - | chr5_1:46732173-46732192 | None:intergenic | 45.0% | |
| GTTTCCTTAAGGATGGGAAG+AGG | + | chr5_1:46732173-46732192 | Msa0733440:intron | 45.0% | |
| TTTCCCTCTTCCCATCCTTA+AGG | - | chr5_1:46732180-46732199 | None:intergenic | 45.0% | |
| GAATATGAAACGCCGACACT+AGG | + | chr5_1:46732255-46732274 | Msa0733440:intron | 45.0% | |
| GATATGACAGCGCCATATGT+CGG | - | chr5_1:46732380-46732399 | None:intergenic | 45.0% | |
| ! | TATCGGCCATGGCAGATTTT+TGG | - | chr5_1:46732456-46732475 | None:intergenic | 45.0% |
| GTGTTGTCAAATATCGGCCA+TGG | - | chr5_1:46732467-46732486 | None:intergenic | 45.0% | |
| ACACCCAGTGTTGTCAATCA+CGG | - | chr5_1:46732685-46732704 | None:intergenic | 45.0% | |
| !! | GTAATGGGCACAGTAAAGCA+AGG | - | chr5_1:46732746-46732765 | None:intergenic | 45.0% |
| CAGACATAAGTAGGGGGTAA+TGG | - | chr5_1:46732762-46732781 | None:intergenic | 45.0% | |
| ! | ACGATGGAAGAAGGACCTTT+TGG | - | chr5_1:46732822-46732841 | None:intergenic | 45.0% |
| ! | GTTTTTGCCCTTGCACAATC+TGG | + | chr5_1:46732900-46732919 | Msa0733440:CDS | 45.0% |
| ACACACACCAGATTGTGCAA+GGG | - | chr5_1:46732910-46732929 | None:intergenic | 45.0% | |
| AGGCTTCAGTGGTATTACCT+CGG | - | chr5_1:46732944-46732963 | None:intergenic | 45.0% | |
| TTGGTCTCTGCAGCAAACAA+TGG | - | chr5_1:46733079-46733098 | None:intergenic | 45.0% | |
| TTGCTGCAGAGACCAATGAA+AGG | + | chr5_1:46733083-46733102 | Msa0733440:intron | 45.0% | |
| !! | CTTTGAAATGCAGAAGCACC+AGG | + | chr5_1:46733215-46733234 | Msa0733440:CDS | 45.0% |
| TGAGCATGGAAAACGATGGT+AGG | - | chr5_1:46733276-46733295 | None:intergenic | 45.0% | |
| AGAACAGGGCAGCACAAAAT+TGG | - | chr5_1:46733356-46733375 | None:intergenic | 45.0% | |
| !! | TCTGAGTCTTTGAAATGGCC+AGG | + | chr5_1:46733447-46733466 | Msa0733440:CDS | 45.0% |
| TCCCTCTAGCAGCATATACA+AGG | + | chr5_1:46733628-46733647 | Msa0733440:intron | 45.0% | |
| CACCTTGTATATGCTGCTAG+AGG | - | chr5_1:46733633-46733652 | None:intergenic | 45.0% | |
| ACAACGCTACCATGTAGTTG+TGG | + | chr5_1:46733760-46733779 | Msa0733440:intron | 45.0% | |
| GAAATAGAACTGTGGCTGTG+TGG | + | chr5_1:46734287-46734306 | Msa0733440:CDS | 45.0% | |
| GCAGTTGCATTCCTTTGCAA+TGG | - | chr5_1:46734939-46734958 | None:intergenic | 45.0% | |
| CAACTGGTGGCTGTAATTCA+AGG | + | chr5_1:46734972-46734991 | Msa0733440:CDS | 45.0% | |
| GAAAGCAGGACTCCAGAATA+AGG | + | chr5_1:46734999-46735018 | Msa0733440:CDS | 45.0% | |
| ATCTATACAGGCAACAGGCA+TGG | + | chr5_1:46735085-46735104 | Msa0733440:CDS | 45.0% | |
| AAGCTCTCATAGAAGGTGAG+GGG | - | chr5_1:46735220-46735239 | None:intergenic | 45.0% | |
| GAAGCTCTCATAGAAGGTGA+GGG | - | chr5_1:46735221-46735240 | None:intergenic | 45.0% | |
| AGAAGCTCTCATAGAAGGTG+AGG | - | chr5_1:46735222-46735241 | None:intergenic | 45.0% | |
| ACCTTCTATGAGAGCTTCTG+AGG | + | chr5_1:46735223-46735242 | Msa0733440:three_prime_UTR | 45.0% | |
| CCTTCTATGAGAGCTTCTGA+GGG | + | chr5_1:46735224-46735243 | Msa0733440:three_prime_UTR | 45.0% | |
| !!! | ATATTTGAATTTTTTTTATT+AGG | + | chr5_1:46731044-46731063 | Msa0733440:intron | 5.0% |
| !!! | TATTTGAATTTTTTTTATTA+GGG | + | chr5_1:46731045-46731064 | Msa0733440:intron | 5.0% |
| ! | TTGTGAATGGAAGGTGGTGG+TGG | + | chr5_1:46730652-46730671 | Msa0733440:exon | 50.0% |
| AAGAAGAAGCAAGGTCGTGG+TGG | + | chr5_1:46730742-46730761 | Msa0733440:CDS | 50.0% | |
| AGGTCTTCGTGTCAGTGACA+TGG | + | chr5_1:46731321-46731340 | Msa0733440:intron | 50.0% | |
| TGGTCTTCGTGTCAGTGACA+TGG | + | chr5_1:46731416-46731435 | Msa0733440:intron | 50.0% | |
| AGGTCTTCGTGTCAGTGACA+TGG | + | chr5_1:46731321-46731340 | Msa0733440:intron | 50.0% | |
| AGAGCTGTAGGGTTTCAGCT+GGG | + | chr5_1:46731857-46731876 | Msa0733440:intron | 50.0% | |
| TTCAGCTGGGAGAGGGTAAT+AGG | + | chr5_1:46731870-46731889 | Msa0733440:intron | 50.0% | |
| TCTTCCCCTCGTTTCGGAAA+AGG | - | chr5_1:46732012-46732031 | None:intergenic | 50.0% | |
| ! | TTTTCCGAAACGAGGGGAAG+AGG | + | chr5_1:46732011-46732030 | Msa0733440:intron | 50.0% |
| TCTTCCCCTCGTTTCGGAAA+AGG | - | chr5_1:46732012-46732031 | None:intergenic | 50.0% | |
| ! | TTTTCCGAAACGAGGGGAAG+AGG | + | chr5_1:46732011-46732030 | Msa0733440:intron | 50.0% |
| GTTTCCTCTTCCCCTCGTTT+CGG | - | chr5_1:46732099-46732118 | None:intergenic | 50.0% | |
| GGCGCTGTCATATCCAAGTA+TGG | + | chr5_1:46732386-46732405 | Msa0733440:intron | 50.0% | |
| ! | CATATCCAAGTATGGTGCCG+TGG | + | chr5_1:46732394-46732413 | Msa0733440:intron | 50.0% |
| ATGATATGGCCAATTCGCGG+AGG | - | chr5_1:46732429-46732448 | None:intergenic | 50.0% | |
| GGGCACAGTAAAGCAAGGTA+CGG | - | chr5_1:46732741-46732760 | None:intergenic | 50.0% | |
| CACACACACCAGATTGTGCA+AGG | - | chr5_1:46732911-46732930 | None:intergenic | 50.0% | |
| GTGTGTGCAGCATTTAACCG+AGG | + | chr5_1:46732924-46732943 | Msa0733440:CDS | 50.0% | |
| TGCCGAAAACAAGGCTTCAG+TGG | - | chr5_1:46732955-46732974 | None:intergenic | 50.0% | |
| AGGGCAGCACAAAATTGGAC+AGG | - | chr5_1:46733351-46733370 | None:intergenic | 50.0% | |
| !! | AGTACTGACATACTCTGCCC+AGG | + | chr5_1:46733500-46733519 | Msa0733440:CDS | 50.0% |
| TGACATACTCTGCCCAGGAT+AGG | + | chr5_1:46733505-46733524 | Msa0733440:CDS | 50.0% | |
| CTTTCGAGGATCACCTTCTG+TGG | + | chr5_1:46734335-46734354 | Msa0733440:CDS | 50.0% | |
| TGCAATCAGGATGCCACAGA+AGG | - | chr5_1:46734351-46734370 | None:intergenic | 50.0% | |
| GAGCACAGTTAGAGAAGCCT+TGG | + | chr5_1:46735021-46735040 | Msa0733440:CDS | 50.0% | |
| CCCTCAGAAGCTCTCATAGA+AGG | - | chr5_1:46735227-46735246 | None:intergenic | 50.0% | |
| !! | TGAATGGAAGGTGGTGGTGG+TGG | + | chr5_1:46730655-46730674 | Msa0733440:exon | 55.0% |
| ! | GTCCAAGACCTTGTTGTGGC+CGG | + | chr5_1:46730707-46730726 | Msa0733440:CDS | 55.0% |
| ! | GTGGTGGCGAAGAAGAAGCA+AGG | + | chr5_1:46730733-46730752 | Msa0733440:CDS | 55.0% |
| GCGAAGAAGAAGCAAGGTCG+TGG | + | chr5_1:46730739-46730758 | Msa0733440:CDS | 55.0% | |
| GCTGTACCTGATCCCTCTGA+AGG | + | chr5_1:46731790-46731809 | Msa0733440:intron | 55.0% | |
| GAGAGCTGTAGGGTTTCAGC+TGG | + | chr5_1:46731856-46731875 | Msa0733440:intron | 55.0% | |
| TGTAGGGTTTCAGCTGGGAG+AGG | + | chr5_1:46731862-46731881 | Msa0733440:intron | 55.0% | |
| GTAGGGTTTCAGCTGGGAGA+GGG | + | chr5_1:46731863-46731882 | Msa0733440:intron | 55.0% | |
| GCTTCCTCTTCCCCTCGTTT+CGG | - | chr5_1:46732018-46732037 | None:intergenic | 55.0% | |
| GCGGGTTTCCCGTTTCCTTA+AGG | + | chr5_1:46732162-46732181 | Msa0733440:intron | 55.0% | |
| ACGTCAGACACGCCTAGTGT+CGG | - | chr5_1:46732270-46732289 | None:intergenic | 55.0% | |
| CCATATGTCGGTCGGCATGT+CGG | - | chr5_1:46732368-46732387 | None:intergenic | 55.0% | |
| TGACAGCGCCATATGTCGGT+CGG | - | chr5_1:46732376-46732395 | None:intergenic | 55.0% | |
| TATGGCCAATTCGCGGAGGA+TGG | - | chr5_1:46732425-46732444 | None:intergenic | 55.0% | |
| AAATGGGGCAGCAGTGCAGA+GGG | - | chr5_1:46734483-46734502 | None:intergenic | 55.0% | |
| AAAATGGGGCAGCAGTGCAG+AGG | - | chr5_1:46734484-46734503 | None:intergenic | 55.0% | |
| TGCGGTGACGACTGTTCAAC+TGG | + | chr5_1:46734956-46734975 | Msa0733440:CDS | 55.0% | |
| GGTGACGACTGTTCAACTGG+TGG | + | chr5_1:46734959-46734978 | Msa0733440:CDS | 55.0% | |
| TACAGGCAACAGGCATGGTC+TGG | + | chr5_1:46735090-46735109 | Msa0733440:CDS | 55.0% | |
| ! | GGCATGGTCTGGTTCATGTG+TGG | + | chr5_1:46735101-46735120 | Msa0733440:CDS | 55.0% |
| CTCATAGAAGGTGAGGGGTG+AGG | - | chr5_1:46735215-46735234 | None:intergenic | 55.0% | |
| TCTTCTTCGCCACCACACGC+CGG | - | chr5_1:46730729-46730748 | None:intergenic | 60.0% | |
| ! | AAGCAAGGTCGTGGTGGTGC+CGG | + | chr5_1:46730748-46730767 | Msa0733440:CDS | 60.0% |
| CGGTCGGCATGTCGGAACTT+TGG | - | chr5_1:46732360-46732379 | None:intergenic | 60.0% | |
| CCGACATGCCGACCGACATA+TGG | + | chr5_1:46732365-46732384 | Msa0733440:intron | 60.0% | |
| AGGAGGGTTCAGCCAGATGC+TGG | + | chr5_1:46733408-46733427 | Msa0733440:CDS | 60.0% | |
| GTGGCTGTGTGGAACTTCCG+TGG | + | chr5_1:46734298-46734317 | Msa0733440:CDS | 60.0% | |
| AGAAGGTGAGGGGTGAGGAC+AGG | - | chr5_1:46735210-46735229 | None:intergenic | 60.0% | |
| !! | GAAGGTGGTGGTGGTGGCAG+CGG | + | chr5_1:46730661-46730680 | Msa0733440:CDS | 65.0% |
| CGCCGGCCACAACAAGGTCT+TGG | - | chr5_1:46730712-46730731 | None:intergenic | 65.0% | |
| ! | ACCTTGTTGTGGCCGGCGTG+TGG | + | chr5_1:46730714-46730733 | Msa0733440:CDS | 65.0% |
| ACCACACGCCGGCCACAACA+AGG | - | chr5_1:46730718-46730737 | None:intergenic | 65.0% | |
| TTGTTGTGGCCGGCGTGTGG+TGG | + | chr5_1:46730717-46730736 | Msa0733440:CDS | 65.0% | |
| !! | GTCGTGGTGGTGCCGGTGAT+GGG | + | chr5_1:46730755-46730774 | Msa0733440:CDS | 65.0% |
| CAGCGCCACGGCACCATACT+TGG | - | chr5_1:46732402-46732421 | None:intergenic | 65.0% | |
| CGCTGCCATCCTCCGCGAAT+TGG | + | chr5_1:46732417-46732436 | Msa0733440:intron | 65.0% | |
| !! | GTGGTGGTGGCAGCGGTGGT+GGG | + | chr5_1:46730668-46730687 | Msa0733440:CDS | 70.0% |
| !! | GGTCGTGGTGGTGCCGGTGA+TGG | + | chr5_1:46730754-46730773 | Msa0733440:CDS | 70.0% |
| !! | GGTGGTGGTGGTGGCAGCGG+TGG | + | chr5_1:46730664-46730683 | Msa0733440:CDS | 75.0% |
| !! | GGTGGTGGTGGCAGCGGTGG+TGG | + | chr5_1:46730667-46730686 | Msa0733440:CDS | 75.0% |
| !! | GTGGTGGCAGCGGTGGTGGG+AGG | + | chr5_1:46730671-46730690 | Msa0733440:CDS | 75.0% |
| CGCGGAGGATGGCAGCGCCA+CGG | - | chr5_1:46732414-46732433 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 46730420 | 46735458 | 46730420 | ID=Msa0733440;Name=Msa0733440 |
| chr5_1 | mRNA | 46730420 | 46735458 | 46730420 | ID=Msa0733440-mRNA-1;Parent=Msa0733440;Name=Msa0733440-mRNA-1;_AED=0.06;_eAED=0.06;_QI=238|1|1|1|1|1|8|326|488 |
| chr5_1 | exon | 46730420 | 46730885 | 46730420 | ID=Msa0733440-mRNA-1:exon:13318;Parent=Msa0733440-mRNA-1 |
| chr5_1 | exon | 46732798 | 46732945 | 46732798 | ID=Msa0733440-mRNA-1:exon:13319;Parent=Msa0733440-mRNA-1 |
| chr5_1 | exon | 46733092 | 46733242 | 46733092 | ID=Msa0733440-mRNA-1:exon:13320;Parent=Msa0733440-mRNA-1 |
| chr5_1 | exon | 46733401 | 46733526 | 46733401 | ID=Msa0733440-mRNA-1:exon:13321;Parent=Msa0733440-mRNA-1 |
| chr5_1 | exon | 46733640 | 46733720 | 46733640 | ID=Msa0733440-mRNA-1:exon:13322;Parent=Msa0733440-mRNA-1 |
| chr5_1 | exon | 46733920 | 46734112 | 46733920 | ID=Msa0733440-mRNA-1:exon:13323;Parent=Msa0733440-mRNA-1 |
| chr5_1 | exon | 46734190 | 46734460 | 46734190 | ID=Msa0733440-mRNA-1:exon:13324;Parent=Msa0733440-mRNA-1 |
| chr5_1 | exon | 46734864 | 46735458 | 46734864 | ID=Msa0733440-mRNA-1:exon:13325;Parent=Msa0733440-mRNA-1 |
| chr5_1 | five_prime_UTR | 46730420 | 46730657 | 46730420 | ID=Msa0733440-mRNA-1:five_prime_utr;Parent=Msa0733440-mRNA-1 |
| chr5_1 | CDS | 46730658 | 46730885 | 46730658 | ID=Msa0733440-mRNA-1:cds;Parent=Msa0733440-mRNA-1 |
| chr5_1 | CDS | 46732798 | 46732945 | 46732798 | ID=Msa0733440-mRNA-1:cds;Parent=Msa0733440-mRNA-1 |
| chr5_1 | CDS | 46733092 | 46733242 | 46733092 | ID=Msa0733440-mRNA-1:cds;Parent=Msa0733440-mRNA-1 |
| chr5_1 | CDS | 46733401 | 46733526 | 46733401 | ID=Msa0733440-mRNA-1:cds;Parent=Msa0733440-mRNA-1 |
| chr5_1 | CDS | 46733640 | 46733720 | 46733640 | ID=Msa0733440-mRNA-1:cds;Parent=Msa0733440-mRNA-1 |
| chr5_1 | CDS | 46733920 | 46734112 | 46733920 | ID=Msa0733440-mRNA-1:cds;Parent=Msa0733440-mRNA-1 |
| chr5_1 | CDS | 46734190 | 46734460 | 46734190 | ID=Msa0733440-mRNA-1:cds;Parent=Msa0733440-mRNA-1 |
| chr5_1 | CDS | 46734864 | 46735132 | 46734864 | ID=Msa0733440-mRNA-1:cds;Parent=Msa0733440-mRNA-1 |
| chr5_1 | three_prime_UTR | 46735133 | 46735458 | 46735133 | ID=Msa0733440-mRNA-1:three_prime_utr;Parent=Msa0733440-mRNA-1 |
| Gene Sequence |
| Protein sequence |
