AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0774580

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0774580 MtrunA17_Chr5g0428701 98.077 260 4 1 1 259 229 488 0.0 525
Msa0774580 MtrunA17_Chr3g0128451 88.417 259 30 0 1 259 226 484 4.03e-164 463
Msa0774580 MtrunA17_Chr7g0245501 70.656 259 48 3 1 259 258 488 7.53e-126 366
Msa0774580 MtrunA17_Chr4g0057181 56.327 245 79 7 2 239 84 307 7.57e-79 241
Msa0774580 MtrunA17_Chr4g0057201 58.911 202 55 6 64 259 5 184 1.28e-69 213
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0774580 AT3G54190.1 79.537 259 44 2 1 259 218 467 1.34e-147 421
Msa0774580 AT2G38630.1 78.378 259 45 1 1 259 220 467 3.02e-147 420
Msa0774580 AT2G38630.2 84.795 171 26 0 1 171 220 390 2.61e-105 311
Msa0774580 AT2G38630.3 83.333 84 14 0 1 84 220 303 6.25e-43 149

Find 128 sgRNAs with CRISPR-Local

Find 344 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTAACTGTGCTCCTTATTC+TGG 0.142146 5_2:+50968608 None:intergenic
CTGACCTTGTGATTTCTTAT+TGG 0.143621 5_2:-50968468 Msa0774580:three_prime_UTR
GGTGGTGGTGGCAGTGGTGG+TGG 0.175564 5_2:-50972954 Msa0774580:five_prime_UTR
GAAATTCTGAGTTTGAAATT+TGG 0.195479 5_2:+50973053 None:intergenic
GTCCTTGTCACTTACAATTT+AGG 0.232905 5_2:-50968334 Msa0774580:three_prime_UTR
GGTGGTGGTGGTGGCAGTGG+TGG 0.262231 5_2:-50972957 Msa0774580:five_prime_UTR
GTAGAGTTTGATGATGTAAA+TGG 0.288059 5_2:-50970145 Msa0774580:five_prime_UTR
CGCTACAATTTCAATAATCT+TGG 0.304621 5_2:+50970754 None:intergenic
TGAGTTTGAAATTTGGATCT+AGG 0.317112 5_2:+50973060 None:intergenic
ACTAAAATATTTACCTATCC+TGG 0.325125 5_2:+50970101 None:intergenic
GAAGGTGGTGGTGGTGGCAG+TGG 0.329719 5_2:-50972960 Msa0774580:five_prime_UTR
AATTACATACATCAAGGATT+TGG 0.331971 5_2:+50969519 None:intergenic
ACGATGGAAGAAGGACCTTT+TGG 0.333777 5_2:+50970800 None:intergenic
GGTCGTGGTGGTGCCGGTGA+TGG 0.335031 5_2:-50972867 Msa0774580:five_prime_UTR
GTGGTGGCAGTGGTGGTGGG+AGG 0.349373 5_2:-50972950 Msa0774580:five_prime_UTR
GAAAGCAGGACTCCAGAATA+AGG 0.350284 5_2:-50968620 Msa0774580:CDS
GTGGTGGTGGCAGTGGTGGT+GGG 0.354593 5_2:-50972953 Msa0774580:five_prime_UTR
ACTAAACCCACGAACACTTT+TGG 0.362386 5_2:+50972800 None:intergenic
CAAGAAGCATATCCTTTCAT+TGG 0.363629 5_2:+50970524 None:intergenic
TAAAATGTTGCTGATATTGA+TGG 0.364645 5_2:+50968749 None:intergenic
ATGGGTTTATCAACAGTGTT+AGG 0.376927 5_2:-50972848 Msa0774580:five_prime_UTR
TGAAATGAAATGAAATGAAA+TGG 0.384969 5_2:+50973181 None:intergenic
TGCGGTGACGACTGTTCAAC+TGG 0.387089 5_2:-50968663 Msa0774580:CDS
AAGCTTCTTATAACTTCATC+AGG 0.395989 5_2:+50970492 None:intergenic
GTCGTGGTGGTGCCGGTGAT+GGG 0.402381 5_2:-50972866 Msa0774580:five_prime_UTR
GAAATGAAATGAAATGAAAT+GGG 0.409358 5_2:+50973182 None:intergenic
ATGTTGTTTGTGTTGCAATC+AGG 0.422140 5_2:+50969258 None:intergenic
ATTCCGCAATATCCGTTTGA+AGG 0.430337 5_2:-50972757 Msa0774580:intron
GTAAGTGTCTTGCAAAGATA+AGG 0.436057 5_2:-50968722 Msa0774580:CDS
CAGTTGCATTCCTTTGCAAT+GGG 0.439356 5_2:+50968684 None:intergenic
TCGAATCTGAGTCTTTGAAA+TGG 0.440922 5_2:-50970177 Msa0774580:five_prime_UTR
GAGCACAGTTAGAGAAGCCT+TGG 0.446199 5_2:-50968598 Msa0774580:CDS
ACAATAAATATATGAGATGT+TGG 0.447171 5_2:-50968200 Msa0774580:three_prime_UTR
AAAAGAGCAAATCCAGCATC+TGG 0.454290 5_2:+50970199 None:intergenic
AAGCAAGGTCGTGGTGGTGC+CGG 0.460182 5_2:-50972873 Msa0774580:five_prime_UTR
CGTGAAATGGAAGGTGGTGG+TGG 0.462981 5_2:-50972969 Msa0774580:intron
CAACTGGTGGCTGTAATTCA+AGG 0.463270 5_2:-50968647 Msa0774580:CDS
TAGAGTTTGATGATGTAAAT+GGG 0.465900 5_2:-50970144 Msa0774580:five_prime_UTR
GGAACAATTGATTCTCATAC+AGG 0.466753 5_2:+50969364 None:intergenic
CAGTTCTATTTCGAAAGGTC+AGG 0.466814 5_2:+50969343 None:intergenic
CTTTGAAATGCAGAAGCACC+AGG 0.469827 5_2:-50970404 Msa0774580:five_prime_UTR
TACAGGCAACAGGCATGGTC+TGG 0.470678 5_2:-50968529 Msa0774580:CDS
ATGAGATCTATACAGGCAAC+AGG 0.476395 5_2:-50968539 Msa0774580:CDS
CGCCGCCCACAACAAGGTCT+TGG 0.479424 5_2:+50972912 None:intergenic
AGGAGGGTTCAGCCAGATGC+TGG 0.480217 5_2:-50970211 Msa0774580:five_prime_UTR
GATCGCAATGAGATCTATAC+AGG 0.483836 5_2:-50968546 Msa0774580:CDS
TACATACATCAAGGATTTGG+AGG 0.487961 5_2:+50969522 None:intergenic
TCTGAGTCTTTGAAATGGCC+AGG 0.492056 5_2:-50970172 Msa0774580:five_prime_UTR
CCCTCAGAAGCTCTCATAGC+AGG 0.492982 5_2:+50968395 None:intergenic
ATTTCTACCAAAAGTGTTCG+TGG 0.493930 5_2:-50972807 Msa0774580:five_prime_UTR
TGCTATTCCGATGAATAAGA+TGG 0.497519 5_2:+50969603 None:intergenic
CATTCAACCATCTTATTCAT+CGG 0.499367 5_2:-50969610 Msa0774580:CDS
GGTATATACTTACTCAATCC+TGG 0.499463 5_2:+50970386 None:intergenic
GCAGTTGCATTCCTTTGCAA+TGG 0.503588 5_2:+50968683 None:intergenic
AAAATCCTCTCAATAGAAGA+TGG 0.512260 5_2:-50969647 Msa0774580:CDS
TAAGTGTCTTGCAAAGATAA+GGG 0.513770 5_2:-50968721 Msa0774580:CDS
AGCAGGTGAGGGGTGAGGAC+AGG 0.519075 5_2:+50968412 None:intergenic
TTTCTACCAAAAGTGTTCGT+GGG 0.521591 5_2:-50972806 Msa0774580:five_prime_UTR
CTAAAATATTTACCTATCCT+GGG 0.521778 5_2:+50970102 None:intergenic
CTTTCGAGGATCACCTTCTG+TGG 0.523315 5_2:-50969284 Msa0774580:CDS
AGAACTTGTAACTTCTTTCG+AGG 0.523322 5_2:-50969298 Msa0774580:CDS
TATGATACATATGATCCAAA+AGG 0.524311 5_2:-50970815 Msa0774580:five_prime_UTR
TAATTCAAGGAAGCGAAAGC+AGG 0.524790 5_2:-50968634 Msa0774580:CDS
ATCACAATTCACAACAATCA+AGG 0.526383 5_2:+50968438 None:intergenic
GAAATGGAAGGTGGTGGTGG+TGG 0.527777 5_2:-50972966 Msa0774580:intron
GAGCCACCGTTCACAATTCA+CGG 0.530492 5_2:+50973012 None:intergenic
AGGGAAGTTATACTGTATGC+TGG 0.533503 5_2:-50968251 Msa0774580:three_prime_UTR
CAAGTCCAAGACCTTGTTGT+GGG 0.534531 5_2:-50972917 Msa0774580:five_prime_UTR
GAGTCATTGTCTGAAGGAAA+TGG 0.537465 5_2:-50969180 Msa0774580:intron
ACCTGCTATGAGAGCTTCTG+AGG 0.541855 5_2:-50968396 Msa0774580:three_prime_UTR
CTCATAGCAGGTGAGGGGTG+AGG 0.543376 5_2:+50968407 None:intergenic
ACCTTGTTGTGGGCGGCGTG+TGG 0.544995 5_2:-50972907 Msa0774580:five_prime_UTR
AATGGCAATACGATGGAAGA+AGG 0.548928 5_2:+50970791 None:intergenic
TCCCTCTAGCAGCATATACA+AGG 0.555060 5_2:-50969991 Msa0774580:intron
GTTGGATAATGTTTGCGTCC+CGG 0.555585 5_2:-50968182 None:intergenic
TTGTTGTGGGCGGCGTGTGG+TGG 0.555594 5_2:-50972904 Msa0774580:five_prime_UTR
TGAGAAAAGGAACCTTCAAA+CGG 0.564827 5_2:+50972745 None:intergenic
GCGAAGAAGAAGCAAGGTCG+TGG 0.567056 5_2:-50972882 Msa0774580:five_prime_UTR
ATCTATACAGGCAACAGGCA+TGG 0.569220 5_2:-50968534 Msa0774580:CDS
TCATCAAACTCTACAAAACC+TGG 0.569346 5_2:+50970154 None:intergenic
TACAGGAAAATAAATGCAGA+TGG 0.569436 5_2:+50969381 None:intergenic
GTCCAAGACCTTGTTGTGGG+CGG 0.570747 5_2:-50972914 Msa0774580:five_prime_UTR
TGACATACTCTGCCCAGGAT+AGG 0.571913 5_2:-50970114 Msa0774580:intron
TAATAGCTTTCCCATTGCAA+AGG 0.572720 5_2:-50968694 Msa0774580:CDS
GAAGCTCTCATAGCAGGTGA+GGG 0.573626 5_2:+50968401 None:intergenic
AAGAGCAGTAATGTCTTCCA+AGG 0.582856 5_2:+50968581 None:intergenic
CAGTACCATCTTCTATTGAG+AGG 0.585743 5_2:+50969642 None:intergenic
ATGTACAAGAGATTAAGATC+AGG 0.590315 5_2:-50969920 Msa0774580:intron
CACACACACCAGATTGTGCA+AGG 0.591742 5_2:+50970711 None:intergenic
TTTCAAAGAACTGTAACTGT+CGG 0.596748 5_2:+50970419 None:intergenic
GGCCGTGAAATGGAAGGTGG+TGG 0.597875 5_2:-50972972 Msa0774580:intron
AGCCACAGTTCTATTTCGAA+AGG 0.602024 5_2:+50969338 None:intergenic
AGAAGCTCTCATAGCAGGTG+AGG 0.603141 5_2:+50968400 None:intergenic
GTGGCTGTGTGGAACTTCCG+TGG 0.603784 5_2:-50969321 Msa0774580:CDS
GCTTACGGAAGTTAGCAAAA+CGG 0.605021 5_2:-50969415 Msa0774580:CDS
TTTATACCGTGAATTGTGAA+CGG 0.605894 5_2:-50973018 Msa0774580:intron
TAAATCAACAACATGATCCC+CGG 0.608013 5_2:+50969698 None:intergenic
AGTACTGACATACTCTGCCC+AGG 0.608287 5_2:-50970119 Msa0774580:five_prime_UTR
CATATACATAACAAGTGACC+AGG 0.608793 5_2:-50969238 Msa0774580:CDS
AGTATGATATGATGAGATCC+TGG 0.609520 5_2:+50969220 None:intergenic
TGCAATCAGGATGCCACAGA+AGG 0.609682 5_2:+50969271 None:intergenic
ACCACACGCCGCCCACAACA+AGG 0.612090 5_2:+50972906 None:intergenic
ATTTAGGCATGTTCTGCATG+TGG 0.612582 5_2:-50968318 Msa0774580:three_prime_UTR
ACTGTTGATAAACCCATCAC+CGG 0.614575 5_2:+50972854 None:intergenic
GAACCTTCAAACGGATATTG+CGG 0.621364 5_2:+50972754 None:intergenic
CAAGATTATTGAAATTGTAG+CGG 0.621428 5_2:-50970753 Msa0774580:five_prime_UTR
GGCATGGTCTGGTTCATGTG+TGG 0.636460 5_2:-50968518 Msa0774580:CDS
CAAGCCAATAAGAAATCACA+AGG 0.640491 5_2:+50968464 None:intergenic
CCTGCTATGAGAGCTTCTGA+GGG 0.643430 5_2:-50968395 Msa0774580:three_prime_UTR
TCAAGTCCAAGACCTTGTTG+TGG 0.650376 5_2:-50972918 Msa0774580:five_prime_UTR
TGCCTAAATTGTAAGTGACA+AGG 0.651042 5_2:+50968332 None:intergenic
GTGGTGGCGAAGAAGAAGCA+AGG 0.655830 5_2:-50972888 Msa0774580:five_prime_UTR
AAATGAAATGAAATGAAATG+GGG 0.656724 5_2:+50973183 None:intergenic
TCTGATGAGTCATTGTCTGA+AGG 0.658222 5_2:-50969186 Msa0774580:CDS
TCTCATCATATCATACTGCA+AGG 0.658840 5_2:-50969214 Msa0774580:CDS
TCTTATTCATCGGAATAGCA+AGG 0.665657 5_2:-50969600 Msa0774580:CDS
TTGCTGCAGAGACCAATGAA+AGG 0.677144 5_2:-50970536 Msa0774580:intron
AAGAAGAAGCAAGGTCGTGG+TGG 0.677858 5_2:-50972879 Msa0774580:five_prime_UTR
GAAATAGAACTGTGGCTGTG+TGG 0.679446 5_2:-50969332 Msa0774580:CDS
AAGCTCTCATAGCAGGTGAG+GGG 0.683339 5_2:+50968402 None:intergenic
GTTGGCCGTGAAATGGAAGG+TGG 0.685934 5_2:-50972975 Msa0774580:intron
AAGAAGTTACAAGTTCTCCA+CGG 0.690206 5_2:+50969304 None:intergenic
GGTGACGACTGTTCAACTGG+TGG 0.696358 5_2:-50968660 Msa0774580:CDS
ATTGCAAAGGAATGCAACTG+CGG 0.699889 5_2:-50968681 Msa0774580:CDS
GACCTTTCGAAATAGAACTG+TGG 0.709860 5_2:-50969340 Msa0774580:CDS
ACACACACCAGATTGTGCAA+GGG 0.713361 5_2:+50970712 None:intergenic
TATTCATCGGAATAGCAAGG+TGG 0.740005 5_2:-50969597 Msa0774580:CDS
GTGTGTGCAGCATTTAACCG+AGG 0.786396 5_2:-50970695 Msa0774580:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GTTAAAAAAATTTAATTGAT+AGG - chr5_2:50969986-50970005 Msa0774580:intron 10.0%
!!! ATCTAGGTTTTTTAAATTTT+TGG + chr5_2:50968330-50968349 None:intergenic 15.0%
!!! TTTTAAATCTAAATCTATGA+TGG - chr5_2:50968726-50968745 Msa0774580:CDS 15.0%
!! AACATACTAGAAATAAAAAA+AGG - chr5_2:50969681-50969700 Msa0774580:CDS 15.0%
!! ACAAATTCAATAATTAATGT+AGG - chr5_2:50969904-50969923 Msa0774580:intron 15.0%
!!! ATAATAAATATTGATTTGCA+CGG + chr5_2:50970093-50970112 None:intergenic 15.0%
!! TATATTTACAAAATTCTTGA+TGG - chr5_2:50971354-50971373 Msa0774580:intron 15.0%
!! GTAATTAAAAGTAAGATATA+TGG + chr5_2:50971948-50971967 None:intergenic 15.0%
!! GAGACAAAATAAAAATAATT+GGG + chr5_2:50972296-50972315 None:intergenic 15.0%
!! AGAGACAAAATAAAAATAAT+TGG + chr5_2:50972297-50972316 None:intergenic 15.0%
!!! ATCAATATTTTTTTTTTGAG+AGG - chr5_2:50972355-50972374 Msa0774580:intron 15.0%
!!! TGTATGTTTTTTATTTTTTG+AGG - chr5_2:50973132-50973151 Msa0774580:five_prime_UTR 15.0%
!!! GTATGTTTTTTATTTTTTGA+GGG - chr5_2:50973133-50973152 Msa0774580:five_prime_UTR 15.0%
!! AAATGAAATGAAATGAAATG+GGG + chr5_2:50968223-50968242 None:intergenic 20.0%
!! GAAATGAAATGAAATGAAAT+GGG + chr5_2:50968224-50968243 None:intergenic 20.0%
!! TGAAATGAAATGAAATGAAA+TGG + chr5_2:50968225-50968244 None:intergenic 20.0%
!!! AGGTTTTTTAAATTTTTGGT+GGG + chr5_2:50968326-50968345 None:intergenic 20.0%
!!! TAGGTTTTTTAAATTTTTGG+TGG + chr5_2:50968327-50968346 None:intergenic 20.0%
!!! AAACTCAGAATTTCAATTTT+AGG - chr5_2:50968359-50968378 Msa0774580:three_prime_UTR 20.0%
!!! AACTCAGAATTTCAATTTTA+GGG - chr5_2:50968360-50968379 Msa0774580:three_prime_UTR 20.0%
!! CATTAATAATTGTCATAAGA+TGG - chr5_2:50968792-50968811 Msa0774580:intron 20.0%
!!! TTTTTTTTTTTTGCTTGTAG+AGG - chr5_2:50968932-50968951 Msa0774580:intron 20.0%
!!! TTTTTTTTTTTGCTTGTAGA+GGG - chr5_2:50968933-50968952 Msa0774580:intron 20.0%
!!! GATGATTTTTTGTATGTTAA+AGG - chr5_2:50969011-50969030 Msa0774580:intron 20.0%
!!! GCAATCTGTAATAATTTTTT+AGG - chr5_2:50969275-50969294 Msa0774580:CDS 20.0%
!! ACAAATTCGATAATTAATGT+AGG - chr5_2:50969742-50969761 Msa0774580:intron 20.0%
!! CAAATTCGATAATTAATGTA+GGG - chr5_2:50969743-50969762 Msa0774580:intron 20.0%
!! ACAAATTCGATAATTAATGT+AGG - chr5_2:50969742-50969761 Msa0774580:intron 20.0%
!! CAAATTCGATAATTAATGTA+GGG - chr5_2:50969743-50969762 Msa0774580:intron 20.0%
!!! TAATAAATATTGATTTGCAC+GGG + chr5_2:50970092-50970111 None:intergenic 20.0%
!!! AGATTTTTGGAAAAATGATA+TGG + chr5_2:50970227-50970246 None:intergenic 20.0%
!! TAATCAATTCTGTTAAATAG+CGG - chr5_2:50970304-50970323 Msa0774580:intron 20.0%
!! ATATAAATCAGACATAAGTA+GGG + chr5_2:50970554-50970573 None:intergenic 20.0%
!! AATATAAATCAGACATAAGT+AGG + chr5_2:50970555-50970574 None:intergenic 20.0%
!!! TGTCTGATTTATATTTTTAC+AGG - chr5_2:50970560-50970579 Msa0774580:intron 20.0%
!! TAGGAGTTATAAAATAATAG+AGG + chr5_2:50971041-50971060 None:intergenic 20.0%
!!! TGTTTTGTTTAGTTTGTTTT+TGG - chr5_2:50971638-50971657 Msa0774580:intron 20.0%
!!! GTTTTGTTTAGTTTGTTTTT+GGG - chr5_2:50971639-50971658 Msa0774580:intron 20.0%
!!! TTTTGTTTAGTTTGTTTTTG+GGG - chr5_2:50971640-50971659 Msa0774580:intron 20.0%
!!! TATGATTTTTTTTATCAGTC+CGG - chr5_2:50971686-50971705 Msa0774580:intron 20.0%
!!! GTAATTTTCTCATTTTTACA+TGG - chr5_2:50971901-50971920 Msa0774580:intron 20.0%
!! TTAAAAGTAAGATATATGGA+TGG + chr5_2:50971944-50971963 None:intergenic 20.0%
!!! TCTTACTTTTAATTACCTTT+AGG - chr5_2:50971952-50971971 Msa0774580:intron 20.0%
!! AATAATTGGGAAAGAAAAAT+GGG + chr5_2:50972283-50972302 None:intergenic 20.0%
!! AAATAATTGGGAAAGAAAAA+TGG + chr5_2:50972284-50972303 None:intergenic 20.0%
!!! ATTTGTATCATTTGTTGTAA+AGG - chr5_2:50972583-50972602 Msa0774580:intron 20.0%
!! ACAATAAATATATGAGATGT+TGG - chr5_2:50973203-50973222 Msa0774580:five_prime_UTR 20.0%
!! GAAATTCTGAGTTTGAAATT+TGG + chr5_2:50968353-50968372 None:intergenic 25.0%
! AAAGAATTGAGATTGAGAAA+AGG + chr5_2:50968674-50968693 None:intergenic 25.0%
!!! GGTTTTTTTTTATTTGCATG+TGG - chr5_2:50968747-50968766 Msa0774580:CDS 25.0%
!! TATTTATGTTGAAGTTTTGC+TGG - chr5_2:50968878-50968897 Msa0774580:intron 25.0%
!! ATTTATGTTGAAGTTTTGCT+GGG - chr5_2:50968879-50968898 Msa0774580:intron 25.0%
! ATCACAATTCAAATTCTACA+GGG + chr5_2:50968908-50968927 None:intergenic 25.0%
! AATCACAATTCAAATTCTAC+AGG + chr5_2:50968909-50968928 None:intergenic 25.0%
! GATTGTATGAGTAATGTTAT+TGG - chr5_2:50968967-50968986 Msa0774580:intron 25.0%
!!! GAGTAATGTTATTGGTTTAT+AGG - chr5_2:50968975-50968994 Msa0774580:intron 25.0%
! GCAATCTGTAATAATTTCTT+AGG - chr5_2:50969085-50969104 Msa0774580:intron 25.0%
! GCAATCTGTAATAATTTCTT+AGG - chr5_2:50969085-50969104 Msa0774580:intron 25.0%
!! GCAATCTGTAATAATTTTTC+AGG - chr5_2:50969339-50969358 Msa0774580:CDS 25.0%
! AAGGAGATAAAAATTCGTTA+TGG - chr5_2:50969700-50969719 Msa0774580:CDS 25.0%
! CAATAATTAATGTAGGAAAG+CGG - chr5_2:50969911-50969930 Msa0774580:intron 25.0%
! ATCTTGTTCAATGTTATAGA+TGG - chr5_2:50970111-50970130 Msa0774580:intron 25.0%
! AAATCAGTGTTGTCAAATAT+CGG + chr5_2:50970257-50970276 None:intergenic 25.0%
! TATAAATCAGACATAAGTAG+GGG + chr5_2:50970553-50970572 None:intergenic 25.0%
! TATGATACATATGATCCAAA+AGG - chr5_2:50970588-50970607 Msa0774580:intron 25.0%
!!! TATTGCCATTTTTGAGAAAA+AGG - chr5_2:50970625-50970644 Msa0774580:intron 25.0%
! CAAGATTATTGAAATTGTAG+CGG - chr5_2:50970650-50970669 Msa0774580:intron 25.0%
!!! TAGAGTTTGATGATGTAAAT+GGG - chr5_2:50971259-50971278 Msa0774580:intron 25.0%
! CTAAAATATTTACCTATCCT+GGG + chr5_2:50971304-50971323 None:intergenic 25.0%
! ACTAAAATATTTACCTATCC+TGG + chr5_2:50971305-50971324 None:intergenic 25.0%
! ATTTACAAAATTCTTGATGG+TGG - chr5_2:50971357-50971376 Msa0774580:intron 25.0%
! AACAAGAATGAAGTTGTATA+AGG + chr5_2:50971666-50971685 None:intergenic 25.0%
!!! ATGATTTTTTTTATCAGTCC+GGG - chr5_2:50971687-50971706 Msa0774580:intron 25.0%
! AATTACATACATCAAGGATT+TGG + chr5_2:50971887-50971906 None:intergenic 25.0%
! TGAGAAAATTACATACATCA+AGG + chr5_2:50971893-50971912 None:intergenic 25.0%
! ATAATTGGGAAAGAAAAATG+GGG + chr5_2:50972282-50972301 None:intergenic 25.0%
!! AGTACTTTAGTTTATCTCAT+AGG - chr5_2:50972409-50972428 Msa0774580:intron 25.0%
! TGAAAAATTATATCTCTGTC+AGG + chr5_2:50972548-50972567 None:intergenic 25.0%
! TAAAATGTTGCTGATATTGA+TGG + chr5_2:50972657-50972676 None:intergenic 25.0%
!!! AATATCAGCAACATTTTAAC+TGG - chr5_2:50972659-50972678 Msa0774580:intron 25.0%
! TGAGTTTGAAATTTGGATCT+AGG + chr5_2:50968346-50968365 None:intergenic 30.0%
TTTATACCGTGAATTGTGAA+CGG - chr5_2:50968385-50968404 Msa0774580:three_prime_UTR 30.0%
TAGGGTTTGATTGTTTAGTT+TGG - chr5_2:50968847-50968866 Msa0774580:intron 30.0%
AATGGTTATTGTGATCTTAC+TGG - chr5_2:50969376-50969395 Msa0774580:CDS 30.0%
GCAACTTAAATGTTTGCTTT+AGG - chr5_2:50969442-50969461 Msa0774580:intron 30.0%
AAAAATTCGTTATGGAAGAG+AGG - chr5_2:50969708-50969727 Msa0774580:intron 30.0%
TTAATTGATAGGATCAGTGT+TGG - chr5_2:50969997-50970016 Msa0774580:intron 30.0%
TTGTTCAATGTTATAGATGG+CGG - chr5_2:50970114-50970133 Msa0774580:intron 30.0%
! ATTTTTCCAAAAATCTGCCA+TGG - chr5_2:50970231-50970250 Msa0774580:intron 30.0%
ATAAATCAGACATAAGTAGG+GGG + chr5_2:50970552-50970571 None:intergenic 30.0%
! TTGGACCTTTTTCTCAAAAA+TGG + chr5_2:50970633-50970652 None:intergenic 30.0%
CGCTACAATTTCAATAATCT+TGG + chr5_2:50970652-50970671 None:intergenic 30.0%
AACATAAAATGCCGAAAACA+AGG + chr5_2:50970748-50970767 None:intergenic 30.0%
AAGCTTCTTATAACTTCATC+AGG + chr5_2:50970914-50970933 None:intergenic 30.0%
TTTCAAAGAACTGTAACTGT+CGG + chr5_2:50970987-50971006 None:intergenic 30.0%
!!! GAGATATTTTAGCATAGAAC+AGG + chr5_2:50971155-50971174 None:intergenic 30.0%
! CTCTGTTTTCCAGATATATA+AGG - chr5_2:50971172-50971191 Msa0774580:intron 30.0%
! TGTTTTCCAGATATATAAGG+AGG - chr5_2:50971175-50971194 Msa0774580:intron 30.0%
! GTTTTCCAGATATATAAGGA+GGG - chr5_2:50971176-50971195 Msa0774580:intron 30.0%
!! GTAGAGTTTGATGATGTAAA+TGG - chr5_2:50971258-50971277 Msa0774580:intron 30.0%
ATGTACAAGAGATTAAGATC+AGG - chr5_2:50971483-50971502 Msa0774580:intron 30.0%
TAACATAAACCACAACTACA+TGG + chr5_2:50971556-50971575 None:intergenic 30.0%
CAAGCATTAAAACATGTGAA+GGG + chr5_2:50971601-50971620 None:intergenic 30.0%
TCAAGCATTAAAACATGTGA+AGG + chr5_2:50971602-50971621 None:intergenic 30.0%
!!! TGATTTTTTTTATCAGTCCG+GGG - chr5_2:50971688-50971707 Msa0774580:intron 30.0%
!! CTATTGAGAGGATTTTTAGA+GGG + chr5_2:50971752-50971771 None:intergenic 30.0%
!! TCTATTGAGAGGATTTTTAG+AGG + chr5_2:50971753-50971772 None:intergenic 30.0%
AAAATCCTCTCAATAGAAGA+TGG - chr5_2:50971756-50971775 Msa0774580:intron 30.0%
CATTCAACCATCTTATTCAT+CGG - chr5_2:50971793-50971812 Msa0774580:intron 30.0%
TACAGGAAAATAAATGCAGA+TGG + chr5_2:50972025-50972044 None:intergenic 30.0%
! ACTGTTGTTTGAAATTGAAC+TGG - chr5_2:50972489-50972508 Msa0774580:intron 30.0%
! TGTTTGAAATTGAACTGGAA+TGG - chr5_2:50972494-50972513 Msa0774580:intron 30.0%
!!! ATTTCTGCTTTTTCATACAG+CGG - chr5_2:50972628-50972647 Msa0774580:intron 30.0%
ATCACAATTCACAACAATCA+AGG + chr5_2:50972968-50972987 None:intergenic 30.0%
ATGGGTTTATCAACAGTGTT+AGG - chr5_2:50968555-50968574 Msa0774580:CDS 35.0%
!! ATTTCTACCAAAAGTGTTCG+TGG - chr5_2:50968596-50968615 Msa0774580:CDS 35.0%
!! TTTCTACCAAAAGTGTTCGT+GGG - chr5_2:50968597-50968616 Msa0774580:CDS 35.0%
TGAGAAAAGGAACCTTCAAA+CGG + chr5_2:50968661-50968680 None:intergenic 35.0%
TTGTATGTTAAAGGACGAGT+CGG - chr5_2:50969020-50969039 Msa0774580:intron 35.0%
ACATTTGCACATGAGACTTT+GGG - chr5_2:50969471-50969490 Msa0774580:intron 35.0%
!! AGACTTTGGGATGTTTAATG+TGG - chr5_2:50969484-50969503 Msa0774580:intron 35.0%
ATGTGGATCTGTAATTGCTT+AGG - chr5_2:50969501-50969520 Msa0774580:intron 35.0%
CGATAATTAATGTAGGGAAG+AGG - chr5_2:50969749-50969768 Msa0774580:intron 35.0%
TGTAGGGAAGAGGAAAATTA+TGG - chr5_2:50969759-50969778 Msa0774580:intron 35.0%
GTAGGGAAGAGGAAAATTAT+GGG - chr5_2:50969760-50969779 Msa0774580:intron 35.0%
CGATAATTAATGTAGGGAAG+AGG - chr5_2:50969749-50969768 Msa0774580:intron 35.0%
TGTAGGGAAGAGGAAAATTA+TGG - chr5_2:50969759-50969778 Msa0774580:intron 35.0%
GTAGGGAAGAGGAAAATTAT+GGG - chr5_2:50969760-50969779 Msa0774580:intron 35.0%
TGTAGGAAAGCGGAAAATTA+TGG - chr5_2:50969921-50969940 Msa0774580:CDS 35.0%
GTAGGAAAGCGGAAAATTAT+GGG - chr5_2:50969922-50969941 Msa0774580:CDS 35.0%
!! ATATTGATTTGCACGGGTAT+TGG + chr5_2:50970086-50970105 None:intergenic 35.0%
AAAATGATATGGCCAATTCG+CGG + chr5_2:50970216-50970235 None:intergenic 35.0%
TTGTTTCGTGATACACTGTT+TGG - chr5_2:50970358-50970377 Msa0774580:intron 35.0%
TCTATAGAATTGTTGCGTAG+TGG - chr5_2:50970414-50970433 Msa0774580:five_prime_UTR 35.0%
TCTCAAAAATGGCAATACGA+TGG + chr5_2:50970622-50970641 None:intergenic 35.0%
! CAAGAAGCATATCCTTTCAT+TGG + chr5_2:50970882-50970901 None:intergenic 35.0%
GGTATATACTTACTCAATCC+TGG + chr5_2:50971020-50971039 None:intergenic 35.0%
!!! GTGTCTTTTTTTGTTGAGCA+TGG + chr5_2:50971074-50971093 None:intergenic 35.0%
! TCGAATCTGAGTCTTTGAAA+TGG - chr5_2:50971226-50971245 Msa0774580:intron 35.0%
TCATCAAACTCTACAAAACC+TGG + chr5_2:50971252-50971271 None:intergenic 35.0%
! TACATGGTAGCGTTGTATAT+TGG + chr5_2:50971540-50971559 None:intergenic 35.0%
TAAATCAACAACATGATCCC+CGG + chr5_2:50971708-50971727 None:intergenic 35.0%
TGCTATTCCGATGAATAAGA+TGG + chr5_2:50971803-50971822 None:intergenic 35.0%
TCTTATTCATCGGAATAGCA+AGG - chr5_2:50971803-50971822 Msa0774580:intron 35.0%
TACATACATCAAGGATTTGG+AGG + chr5_2:50971884-50971903 None:intergenic 35.0%
! GGAACAATTGATTCTCATAC+AGG + chr5_2:50972042-50972061 None:intergenic 35.0%
AAGAAGTTACAAGTTCTCCA+CGG + chr5_2:50972102-50972121 None:intergenic 35.0%
AGAACTTGTAACTTCTTTCG+AGG - chr5_2:50972105-50972124 Msa0774580:intron 35.0%
! ATGTTGTTTGTGTTGCAATC+AGG + chr5_2:50972148-50972167 None:intergenic 35.0%
CATATACATAACAAGTGACC+AGG - chr5_2:50972165-50972184 Msa0774580:intron 35.0%
AGTATGATATGATGAGATCC+TGG + chr5_2:50972186-50972205 None:intergenic 35.0%
TCTCATCATATCATACTGCA+AGG - chr5_2:50972189-50972208 Msa0774580:intron 35.0%
!!! TTTCTGCTTTTTCATACAGC+GGG - chr5_2:50972629-50972648 Msa0774580:intron 35.0%
TAATAGCTTTCCCATTGCAA+AGG - chr5_2:50972709-50972728 Msa0774580:intron 35.0%
CTGACCTTGTGATTTCTTAT+TGG - chr5_2:50972935-50972954 Msa0774580:five_prime_UTR 35.0%
CAAGCCAATAAGAAATCACA+AGG + chr5_2:50972942-50972961 None:intergenic 35.0%
! GTCCTTGTCACTTACAATTT+AGG - chr5_2:50973069-50973088 Msa0774580:five_prime_UTR 35.0%
TGCCTAAATTGTAAGTGACA+AGG + chr5_2:50973074-50973093 None:intergenic 35.0%
! ACTGTTGATAAACCCATCAC+CGG + chr5_2:50968552-50968571 None:intergenic 40.0%
! ACTAAACCCACGAACACTTT+TGG + chr5_2:50968606-50968625 None:intergenic 40.0%
ATTCCGCAATATCCGTTTGA+AGG - chr5_2:50968646-50968665 Msa0774580:CDS 40.0%
GAACCTTCAAACGGATATTG+CGG + chr5_2:50968652-50968671 None:intergenic 40.0%
AAATCACGCGCGAAATCATA+AGG + chr5_2:50969059-50969078 None:intergenic 40.0%
CAAAGTCTCATGTGCAAATG+TGG + chr5_2:50969472-50969491 None:intergenic 40.0%
CACATTTGCACATGAGACTT+TGG - chr5_2:50969470-50969489 Msa0774580:intron 40.0%
! CCTCTTTTCTTTCCTTCAGA+GGG + chr5_2:50969589-50969608 None:intergenic 40.0%
! CCTCTGAAGGAAAGAAAAGA+GGG - chr5_2:50969587-50969606 Msa0774580:CDS 40.0%
GGAAGAGGAAAATTATGGGT+GGG - chr5_2:50969764-50969783 Msa0774580:intron 40.0%
! AGTTTTCCTTTTCCGAAACG+AGG - chr5_2:50969787-50969806 Msa0774580:intron 40.0%
! GTTTTCCTTTTCCGAAACGA+GGG - chr5_2:50969788-50969807 Msa0774580:intron 40.0%
! TTTTCCTTTTCCGAAACGAG+GGG - chr5_2:50969789-50969808 Msa0774580:intron 40.0%
GGAAGAGGAAAATTATGGGT+GGG - chr5_2:50969764-50969783 Msa0774580:intron 40.0%
! AGTTTTCCTTTTCCGAAACG+AGG - chr5_2:50969787-50969806 Msa0774580:intron 40.0%
! GTTTTCCTTTTCCGAAACGA+GGG - chr5_2:50969788-50969807 Msa0774580:intron 40.0%
! TTTTCCTTTTCCGAAACGAG+GGG - chr5_2:50969789-50969808 Msa0774580:intron 40.0%
AAAGCGGAAAATTATGGGTG+CGG - chr5_2:50969927-50969946 Msa0774580:CDS 40.0%
TTTCCCGTTTCCTTAAGGAT+GGG - chr5_2:50969951-50969970 Msa0774580:exon 40.0%
TCTTCCCATCCTTAAGGAAA+CGG + chr5_2:50969958-50969977 None:intergenic 40.0%
TTTCCTTAAGGATGGGAAGA+GGG - chr5_2:50969958-50969977 Msa0774580:exon 40.0%
!! GATAGGATCAGTGTTGGTAA+TGG - chr5_2:50970003-50970022 Msa0774580:intron 40.0%
GTTAAATAGCGGCTATCATG+TGG - chr5_2:50970315-50970334 Msa0774580:intron 40.0%
TTATCCGTGATTGACAACAC+TGG - chr5_2:50970462-50970481 Msa0774580:five_prime_UTR 40.0%
TATCCGTGATTGACAACACT+GGG - chr5_2:50970463-50970482 Msa0774580:five_prime_UTR 40.0%
GTACGGATCTCATAATAGCA+CGG + chr5_2:50970508-50970527 None:intergenic 40.0%
AGACATAAGTAGGGGGTAAT+GGG + chr5_2:50970545-50970564 None:intergenic 40.0%
AATGGCAATACGATGGAAGA+AGG + chr5_2:50970615-50970634 None:intergenic 40.0%
!!! TACCACTGAAGCCTTGTTTT+CGG - chr5_2:50970734-50970753 Msa0774580:five_prime_UTR 40.0%
TTGTTGAGCATGGAAAACGA+TGG + chr5_2:50971064-50971083 None:intergenic 40.0%
AGAACAGGACAGCACAAAAT+TGG + chr5_2:50971140-50971159 None:intergenic 40.0%
CTGAACCCTCCTTATATATC+TGG + chr5_2:50971184-50971203 None:intergenic 40.0%
AAAAGAGCAAATCCAGCATC+TGG + chr5_2:50971207-50971226 None:intergenic 40.0%
ACCTTGTATATGCTGCTAGA+GGG + chr5_2:50971416-50971435 None:intergenic 40.0%
!! AGAGGATTTTTAGAGGGACA+TGG + chr5_2:50971746-50971765 None:intergenic 40.0%
CAGTACCATCTTCTATTGAG+AGG + chr5_2:50971764-50971783 None:intergenic 40.0%
TATTCATCGGAATAGCAAGG+TGG - chr5_2:50971806-50971825 Msa0774580:intron 40.0%
! GCTCAAAAGTACGTACCTAA+AGG + chr5_2:50971970-50971989 None:intergenic 40.0%
! GGTACGTACTTTTGAGCTTA+CGG - chr5_2:50971973-50971992 Msa0774580:intron 40.0%
GCTTACGGAAGTTAGCAAAA+CGG - chr5_2:50971988-50972007 Msa0774580:intron 40.0%
CAGTTCTATTTCGAAAGGTC+AGG + chr5_2:50972063-50972082 None:intergenic 40.0%
GACCTTTCGAAATAGAACTG+TGG - chr5_2:50972063-50972082 Msa0774580:intron 40.0%
AGCCACAGTTCTATTTCGAA+AGG + chr5_2:50972068-50972087 None:intergenic 40.0%
TCTGATGAGTCATTGTCTGA+AGG - chr5_2:50972217-50972236 Msa0774580:intron 40.0%
GAGTCATTGTCTGAAGGAAA+TGG - chr5_2:50972223-50972242 Msa0774580:intron 40.0%
CAGTTGCATTCCTTTGCAAT+GGG + chr5_2:50972722-50972741 None:intergenic 40.0%
ATTGCAAAGGAATGCAACTG+CGG - chr5_2:50972722-50972741 Msa0774580:intron 40.0%
TAATTCAAGGAAGCGAAAGC+AGG - chr5_2:50972769-50972788 Msa0774580:five_prime_UTR 40.0%
TCTAACTGTGCTCCTTATTC+TGG + chr5_2:50972798-50972817 None:intergenic 40.0%
AAGAGCAGTAATGTCTTCCA+AGG + chr5_2:50972825-50972844 None:intergenic 40.0%
GATCGCAATGAGATCTATAC+AGG - chr5_2:50972857-50972876 Msa0774580:five_prime_UTR 40.0%
ATGAGATCTATACAGGCAAC+AGG - chr5_2:50972864-50972883 Msa0774580:five_prime_UTR 40.0%
ATTTAGGCATGTTCTGCATG+TGG - chr5_2:50973085-50973104 Msa0774580:five_prime_UTR 40.0%
AGGGAAGTTATACTGTATGC+TGG - chr5_2:50973152-50973171 Msa0774580:five_prime_UTR 40.0%
ATACCGTGAATTGTGAACGG+TGG - chr5_2:50968388-50968407 Msa0774580:three_prime_UTR 45.0%
TCAAGTCCAAGACCTTGTTG+TGG - chr5_2:50968485-50968504 Msa0774580:three_prime_UTR 45.0%
! CAAGTCCAAGACCTTGTTGT+GGG - chr5_2:50968486-50968505 Msa0774580:three_prime_UTR 45.0%
CAGGTCTGTGTCAATGACAA+TGG - chr5_2:50969358-50969377 Msa0774580:CDS 45.0%
TCAGAGTACGGGATTAGGTT+GGG + chr5_2:50969552-50969571 None:intergenic 45.0%
ATCAGAGTACGGGATTAGGT+TGG + chr5_2:50969553-50969572 None:intergenic 45.0%
AGCAATCAGAGTACGGGATT+AGG + chr5_2:50969557-50969576 None:intergenic 45.0%
AGGTACAGCAATCAGAGTAC+GGG + chr5_2:50969563-50969582 None:intergenic 45.0%
CAGGTACAGCAATCAGAGTA+CGG + chr5_2:50969564-50969583 None:intergenic 45.0%
TTCTTTCCTTCAGAGGGATC+AGG + chr5_2:50969583-50969602 None:intergenic 45.0%
! CCCTCTGAAGGAAAGAAAAG+AGG - chr5_2:50969586-50969605 Msa0774580:CDS 45.0%
! CCCTCTTTTCTTTCCTTCAG+AGG + chr5_2:50969590-50969609 None:intergenic 45.0%
AGTCCAAATTCGAGAGCTGT+AGG - chr5_2:50969629-50969648 Msa0774580:CDS 45.0%
GTCCAAATTCGAGAGCTGTA+GGG - chr5_2:50969630-50969649 Msa0774580:CDS 45.0%
AACCCTACAGCTCTCGAATT+TGG + chr5_2:50969635-50969654 None:intergenic 45.0%
TCGTTATGGAAGAGAGGAAG+AGG - chr5_2:50969714-50969733 Msa0774580:intron 45.0%
GGGAAGAGGAAAATTATGGG+TGG - chr5_2:50969763-50969782 Msa0774580:intron 45.0%
GGGAAGAGGAAAATTATGGG+TGG - chr5_2:50969763-50969782 Msa0774580:intron 45.0%
AAGCGGAAAATTATGGGTGC+GGG - chr5_2:50969928-50969947 Msa0774580:CDS 45.0%
GTTTCCCGTTTCCTTAAGGA+TGG - chr5_2:50969950-50969969 Msa0774580:exon 45.0%
CTTCCCATCCTTAAGGAAAC+GGG + chr5_2:50969957-50969976 None:intergenic 45.0%
GTTTCCTTAAGGATGGGAAG+AGG - chr5_2:50969957-50969976 Msa0774580:exon 45.0%
TTTCCCTCTTCCCATCCTTA+AGG + chr5_2:50969964-50969983 None:intergenic 45.0%
GAATATGAAACGCCGACACT+AGG - chr5_2:50970039-50970058 Msa0774580:intron 45.0%
GATATGACAGCGCCATATGT+CGG + chr5_2:50970164-50970183 None:intergenic 45.0%
! TATCGGCCATGGCAGATTTT+TGG + chr5_2:50970240-50970259 None:intergenic 45.0%
GTGTTGTCAAATATCGGCCA+TGG + chr5_2:50970251-50970270 None:intergenic 45.0%
ACACCCAGTGTTGTCAATCA+CGG + chr5_2:50970469-50970488 None:intergenic 45.0%
!! GTAATGGGCACAGTAAAGCA+AGG + chr5_2:50970530-50970549 None:intergenic 45.0%
CAGACATAAGTAGGGGGTAA+TGG + chr5_2:50970546-50970565 None:intergenic 45.0%
! ACGATGGAAGAAGGACCTTT+TGG + chr5_2:50970606-50970625 None:intergenic 45.0%
! GTTTTTGCCCTTGCACAATC+TGG - chr5_2:50970684-50970703 Msa0774580:intron 45.0%
ACACACACCAGATTGTGCAA+GGG + chr5_2:50970694-50970713 None:intergenic 45.0%
AGGCTTCAGTGGTATTACCT+CGG + chr5_2:50970728-50970747 None:intergenic 45.0%
TTGGTCTCTGCAGCAAACAA+TGG + chr5_2:50970863-50970882 None:intergenic 45.0%
TTGCTGCAGAGACCAATGAA+AGG - chr5_2:50970867-50970886 Msa0774580:intron 45.0%
!! CTTTGAAATGCAGAAGCACC+AGG - chr5_2:50970999-50971018 Msa0774580:intron 45.0%
TGAGCATGGAAAACGATGGT+AGG + chr5_2:50971060-50971079 None:intergenic 45.0%
AGGACAGCACAAAATTGGAC+AGG + chr5_2:50971135-50971154 None:intergenic 45.0%
!! TCTGAGTCTTTGAAATGGCC+AGG - chr5_2:50971231-50971250 Msa0774580:intron 45.0%
TCCCTCTAGCAGCATATACA+AGG - chr5_2:50971412-50971431 Msa0774580:intron 45.0%
CACCTTGTATATGCTGCTAG+AGG + chr5_2:50971417-50971436 None:intergenic 45.0%
ACAACGCTACCATGTAGTTG+TGG - chr5_2:50971544-50971563 Msa0774580:intron 45.0%
GAAATAGAACTGTGGCTGTG+TGG - chr5_2:50972071-50972090 Msa0774580:intron 45.0%
GCAGTTGCATTCCTTTGCAA+TGG + chr5_2:50972723-50972742 None:intergenic 45.0%
CAACTGGTGGCTGTAATTCA+AGG - chr5_2:50972756-50972775 Msa0774580:intron 45.0%
GAAAGCAGGACTCCAGAATA+AGG - chr5_2:50972783-50972802 Msa0774580:five_prime_UTR 45.0%
ATCTATACAGGCAACAGGCA+TGG - chr5_2:50972869-50972888 Msa0774580:five_prime_UTR 45.0%
!!! ATATTTGAATTTTTTTTATT+AGG - chr5_2:50968828-50968847 Msa0774580:intron 5.0%
!!! TATTTGAATTTTTTTTATTA+GGG - chr5_2:50968829-50968848 Msa0774580:intron 5.0%
GAGCCACCGTTCACAATTCA+CGG + chr5_2:50968394-50968413 None:intergenic 50.0%
CACCACCACCTTCCATTTCA+CGG + chr5_2:50968436-50968455 None:intergenic 50.0%
AAGAAGAAGCAAGGTCGTGG+TGG - chr5_2:50968524-50968543 Msa0774580:CDS 50.0%
AGGTCTTCGTGTCAGTGACA+TGG - chr5_2:50969105-50969124 Msa0774580:intron 50.0%
AGGTCTTCGTGTCAGTGACA+TGG - chr5_2:50969105-50969124 Msa0774580:intron 50.0%
AGGTCTTCGTGTCAGTGACA+TGG - chr5_2:50969105-50969124 Msa0774580:intron 50.0%
AGAGCTGTAGGGTTTCAGCT+GGG - chr5_2:50969641-50969660 Msa0774580:CDS 50.0%
TTCAGCTGGGAGAGGGTAAT+AGG - chr5_2:50969654-50969673 Msa0774580:CDS 50.0%
TCTTCCCCTCGTTTCGGAAA+AGG + chr5_2:50969796-50969815 None:intergenic 50.0%
! TTTTCCGAAACGAGGGGAAG+AGG - chr5_2:50969795-50969814 Msa0774580:intron 50.0%
TCTTCCCCTCGTTTCGGAAA+AGG + chr5_2:50969796-50969815 None:intergenic 50.0%
! TTTTCCGAAACGAGGGGAAG+AGG - chr5_2:50969795-50969814 Msa0774580:intron 50.0%
GTTTCCTCTTCCCCTCGTTT+CGG + chr5_2:50969883-50969902 None:intergenic 50.0%
GGCGCTGTCATATCCAAGTA+TGG - chr5_2:50970170-50970189 Msa0774580:five_prime_UTR 50.0%
! CATATCCAAGTATGGTGCCG+TGG - chr5_2:50970178-50970197 Msa0774580:five_prime_UTR 50.0%
ATGATATGGCCAATTCGCGG+AGG + chr5_2:50970213-50970232 None:intergenic 50.0%
GGGCACAGTAAAGCAAGGTA+CGG + chr5_2:50970525-50970544 None:intergenic 50.0%
CACACACACCAGATTGTGCA+AGG + chr5_2:50970695-50970714 None:intergenic 50.0%
GTGTGTGCAGCATTTAACCG+AGG - chr5_2:50970708-50970727 Msa0774580:five_prime_UTR 50.0%
TGCCGAAAACAAGGCTTCAG+TGG + chr5_2:50970739-50970758 None:intergenic 50.0%
!! AGTACTGACATACTCTGCCC+AGG - chr5_2:50971284-50971303 Msa0774580:intron 50.0%
TGACATACTCTGCCCAGGAT+AGG - chr5_2:50971289-50971308 Msa0774580:intron 50.0%
CTTTCGAGGATCACCTTCTG+TGG - chr5_2:50972119-50972138 Msa0774580:intron 50.0%
TGCAATCAGGATGCCACAGA+AGG + chr5_2:50972135-50972154 None:intergenic 50.0%
GAGCACAGTTAGAGAAGCCT+TGG - chr5_2:50972805-50972824 Msa0774580:five_prime_UTR 50.0%
AAGCTCTCATAGCAGGTGAG+GGG + chr5_2:50973004-50973023 None:intergenic 50.0%
GAAGCTCTCATAGCAGGTGA+GGG + chr5_2:50973005-50973024 None:intergenic 50.0%
AGAAGCTCTCATAGCAGGTG+AGG + chr5_2:50973006-50973025 None:intergenic 50.0%
ACCTGCTATGAGAGCTTCTG+AGG - chr5_2:50973007-50973026 Msa0774580:intron 50.0%
CCTGCTATGAGAGCTTCTGA+GGG - chr5_2:50973008-50973027 Msa0774580:intron 50.0%
GTGAACGGTGGCTCCTTCAT+CGG - chr5_2:50968400-50968419 Msa0774580:three_prime_UTR 55.0%
GGAGTTGGCCGTGAAATGGA+AGG - chr5_2:50968425-50968444 Msa0774580:three_prime_UTR 55.0%
GTTGGCCGTGAAATGGAAGG+TGG - chr5_2:50968428-50968447 Msa0774580:three_prime_UTR 55.0%
! CGTGAAATGGAAGGTGGTGG+TGG - chr5_2:50968434-50968453 Msa0774580:three_prime_UTR 55.0%
!! GAAATGGAAGGTGGTGGTGG+TGG - chr5_2:50968437-50968456 Msa0774580:three_prime_UTR 55.0%
! GTCCAAGACCTTGTTGTGGG+CGG - chr5_2:50968489-50968508 Msa0774580:three_prime_UTR 55.0%
! GTGGTGGCGAAGAAGAAGCA+AGG - chr5_2:50968515-50968534 Msa0774580:CDS 55.0%
GCGAAGAAGAAGCAAGGTCG+TGG - chr5_2:50968521-50968540 Msa0774580:CDS 55.0%
GCTGTACCTGATCCCTCTGA+AGG - chr5_2:50969574-50969593 Msa0774580:CDS 55.0%
GAGAGCTGTAGGGTTTCAGC+TGG - chr5_2:50969640-50969659 Msa0774580:CDS 55.0%
TGTAGGGTTTCAGCTGGGAG+AGG - chr5_2:50969646-50969665 Msa0774580:CDS 55.0%
GTAGGGTTTCAGCTGGGAGA+GGG - chr5_2:50969647-50969666 Msa0774580:CDS 55.0%
GCTTCCTCTTCCCCTCGTTT+CGG + chr5_2:50969802-50969821 None:intergenic 55.0%
GCGGGTTTCCCGTTTCCTTA+AGG - chr5_2:50969946-50969965 Msa0774580:CDS 55.0%
ACGTCAGACACGCCTAGTGT+CGG + chr5_2:50970054-50970073 None:intergenic 55.0%
CCATATGTCGGTCGGCATGT+CGG + chr5_2:50970152-50970171 None:intergenic 55.0%
TGACAGCGCCATATGTCGGT+CGG + chr5_2:50970160-50970179 None:intergenic 55.0%
TATGGCCAATTCGCGGAGGA+TGG + chr5_2:50970209-50970228 None:intergenic 55.0%
AAATGGGGCAGCAGTGCAGA+GGG + chr5_2:50972267-50972286 None:intergenic 55.0%
AAAATGGGGCAGCAGTGCAG+AGG + chr5_2:50972268-50972287 None:intergenic 55.0%
TGCGGTGACGACTGTTCAAC+TGG - chr5_2:50972740-50972759 Msa0774580:intron 55.0%
GGTGACGACTGTTCAACTGG+TGG - chr5_2:50972743-50972762 Msa0774580:intron 55.0%
TACAGGCAACAGGCATGGTC+TGG - chr5_2:50972874-50972893 Msa0774580:five_prime_UTR 55.0%
! GGCATGGTCTGGTTCATGTG+TGG - chr5_2:50972885-50972904 Msa0774580:five_prime_UTR 55.0%
CCCTCAGAAGCTCTCATAGC+AGG + chr5_2:50973011-50973030 None:intergenic 55.0%
AACGGTGGCTCCTTCATCGG+AGG - chr5_2:50968403-50968422 Msa0774580:three_prime_UTR 60.0%
ACGGTGGCTCCTTCATCGGA+GGG - chr5_2:50968404-50968423 Msa0774580:three_prime_UTR 60.0%
GCTCCTTCATCGGAGGGAGT+TGG - chr5_2:50968410-50968429 Msa0774580:three_prime_UTR 60.0%
GGAGGGAGTTGGCCGTGAAA+TGG - chr5_2:50968421-50968440 Msa0774580:three_prime_UTR 60.0%
GGCCGTGAAATGGAAGGTGG+TGG - chr5_2:50968431-50968450 Msa0774580:three_prime_UTR 60.0%
! AAGCAAGGTCGTGGTGGTGC+CGG - chr5_2:50968530-50968549 Msa0774580:CDS 60.0%
CGGTCGGCATGTCGGAACTT+TGG + chr5_2:50970144-50970163 None:intergenic 60.0%
CCGACATGCCGACCGACATA+TGG - chr5_2:50970149-50970168 Msa0774580:five_prime_UTR 60.0%
AGGAGGGTTCAGCCAGATGC+TGG - chr5_2:50971192-50971211 Msa0774580:intron 60.0%
GTGGCTGTGTGGAACTTCCG+TGG - chr5_2:50972082-50972101 Msa0774580:intron 60.0%
CTCATAGCAGGTGAGGGGTG+AGG + chr5_2:50972999-50973018 None:intergenic 60.0%
CGGCCAACTCCCTCCGATGA+AGG + chr5_2:50968416-50968435 None:intergenic 65.0%
!! GAAGGTGGTGGTGGTGGCAG+TGG - chr5_2:50968443-50968462 Msa0774580:three_prime_UTR 65.0%
!! GTGGTGGTGGCAGTGGTGGT+GGG - chr5_2:50968450-50968469 Msa0774580:three_prime_UTR 65.0%
CGCCGCCCACAACAAGGTCT+TGG + chr5_2:50968494-50968513 None:intergenic 65.0%
! ACCTTGTTGTGGGCGGCGTG+TGG - chr5_2:50968496-50968515 Msa0774580:exon 65.0%
ACCACACGCCGCCCACAACA+AGG + chr5_2:50968500-50968519 None:intergenic 65.0%
TTGTTGTGGGCGGCGTGTGG+TGG - chr5_2:50968499-50968518 Msa0774580:exon 65.0%
!! GTCGTGGTGGTGCCGGTGAT+GGG - chr5_2:50968537-50968556 Msa0774580:CDS 65.0%
CAGCGCCACGGCACCATACT+TGG + chr5_2:50970186-50970205 None:intergenic 65.0%
CGCTGCCATCCTCCGCGAAT+TGG - chr5_2:50970201-50970220 Msa0774580:five_prime_UTR 65.0%
AGCAGGTGAGGGGTGAGGAC+AGG + chr5_2:50972994-50973013 None:intergenic 65.0%
!! GGTGGTGGTGGTGGCAGTGG+TGG - chr5_2:50968446-50968465 Msa0774580:three_prime_UTR 70.0%
!! GGTGGTGGTGGCAGTGGTGG+TGG - chr5_2:50968449-50968468 Msa0774580:three_prime_UTR 70.0%
!! GTGGTGGCAGTGGTGGTGGG+AGG - chr5_2:50968453-50968472 Msa0774580:three_prime_UTR 70.0%
!! GGTCGTGGTGGTGCCGGTGA+TGG - chr5_2:50968536-50968555 Msa0774580:CDS 70.0%
CGCGGAGGATGGCAGCGCCA+CGG + chr5_2:50970198-50970217 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 50968183 50973242 50968183 ID=Msa0774580;Name=Msa0774580
chr5_2 mRNA 50968183 50973242 50968183 ID=Msa0774580-mRNA-1;Parent=Msa0774580;Name=Msa0774580-mRNA-1;_AED=0.07;_eAED=0.07;_QI=908|1|1|1|0.87|0.77|9|326|259
chr5_2 exon 50968183 50968777 50968183 ID=Msa0774580-mRNA-1:exon:15147;Parent=Msa0774580-mRNA-1
chr5_2 exon 50969181 50969451 50969181 ID=Msa0774580-mRNA-1:exon:15146;Parent=Msa0774580-mRNA-1
chr5_2 exon 50969529 50969721 50969529 ID=Msa0774580-mRNA-1:exon:15145;Parent=Msa0774580-mRNA-1
chr5_2 exon 50969921 50970001 50969921 ID=Msa0774580-mRNA-1:exon:15144;Parent=Msa0774580-mRNA-1
chr5_2 exon 50970115 50970240 50970115 ID=Msa0774580-mRNA-1:exon:15143;Parent=Msa0774580-mRNA-1
chr5_2 exon 50970399 50970549 50970399 ID=Msa0774580-mRNA-1:exon:15142;Parent=Msa0774580-mRNA-1
chr5_2 exon 50970696 50970843 50970696 ID=Msa0774580-mRNA-1:exon:15141;Parent=Msa0774580-mRNA-1
chr5_2 exon 50972758 50972982 50972758 ID=Msa0774580-mRNA-1:exon:15140;Parent=Msa0774580-mRNA-1
chr5_2 exon 50973019 50973242 50973019 ID=Msa0774580-mRNA-1:exon:15139;Parent=Msa0774580-mRNA-1
chr5_2 five_prime_UTR 50973019 50973242 50973019 ID=Msa0774580-mRNA-1:five_prime_utr;Parent=Msa0774580-mRNA-1
chr5_2 five_prime_UTR 50972758 50972982 50972758 ID=Msa0774580-mRNA-1:five_prime_utr;Parent=Msa0774580-mRNA-1
chr5_2 five_prime_UTR 50970696 50970843 50970696 ID=Msa0774580-mRNA-1:five_prime_utr;Parent=Msa0774580-mRNA-1
chr5_2 five_prime_UTR 50970399 50970549 50970399 ID=Msa0774580-mRNA-1:five_prime_utr;Parent=Msa0774580-mRNA-1
chr5_2 five_prime_UTR 50970115 50970240 50970115 ID=Msa0774580-mRNA-1:five_prime_utr;Parent=Msa0774580-mRNA-1
chr5_2 five_prime_UTR 50969968 50970001 50969968 ID=Msa0774580-mRNA-1:five_prime_utr;Parent=Msa0774580-mRNA-1
chr5_2 CDS 50969921 50969967 50969921 ID=Msa0774580-mRNA-1:cds;Parent=Msa0774580-mRNA-1
chr5_2 CDS 50969529 50969721 50969529 ID=Msa0774580-mRNA-1:cds;Parent=Msa0774580-mRNA-1
chr5_2 CDS 50969181 50969451 50969181 ID=Msa0774580-mRNA-1:cds;Parent=Msa0774580-mRNA-1
chr5_2 CDS 50968509 50968777 50968509 ID=Msa0774580-mRNA-1:cds;Parent=Msa0774580-mRNA-1
chr5_2 three_prime_UTR 50968183 50968508 50968183 ID=Msa0774580-mRNA-1:three_prime_utr;Parent=Msa0774580-mRNA-1
Gene Sequence

>Msa0774580

ATGTTATACTCTGTTGCTGATAAAAATGTACAAGAGATTAAGATCAGTCCGGGGATCATGTTGTTGATTTATACTAAAACAAGCAGCCATGTCCCTCTAAAAATCCTCTCAATAGAAGATGGTACTGTTTTGAAGTCATTCAACCATCTTATTCATCGGAATAGCAAGGTGGACTTTATTGAGCAGTTCAATGAAAAGCTTCTTGTCAAGCAAGAAAATGAGAACCTCCAAATCCTTGATGTACGTACTTTTGAGCTTACGGAAGTTAGCAAAACGGAATTTATGACGCCATCTGCATTTATTTTCCTGTATGAGAATCAATTGTTCCTGACCTTTCGAAATAGAACTGTGGCTGTGTGGAACTTCCGTGGAGAACTTGTAACTTCTTTCGAGGATCACCTTCTGTGGCATCCTGATTGCAACACAAACAACATATACATAACAAGTGACCAGGATCTCATCATATCATACTGCAAGGCTGATTCTGATGAGTCATTGTCTGAAGGAAATGCGGGATCCATCAATATCAGCAACATTTTAACTGGTAAGTGTCTTGCAAAGATAAGGGCAAGTAATAGCTTTCCCATTGCAAAGGAATGCAACTGCGGTGACGACTGTTCAACTGGTGGCTGTAATTCAAGGAAGCGAAAGCAGGACTCCAGAATAAGGAGCACAGTTAGAGAAGCCTTGGAAGACATTACTGCTCTTTTCTATGATGAAGATCGCAATGAGATCTATACAGGCAACAGGCATGGTCTGGTTCATGTGTGGTCTAACTGA
Protein sequence

>Msa0774580

MLYSVADKNVQEIKISPGIMLLIYTKTSSHVPLKILSIEDGTVLKSFNHLIHRNSKVDFIEQFNEKLLVKQENENLQILDVRTFELTEVSKTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDESLSEGNAGSINISNILTGKCLAKIRASNSFPIAKECNCGDDCSTGGCNSRKRKQDSRIRSTVREALEDITALFYDEDRNEIYTGNRHGLVHVWSN*