AlfalfaGEDB | Msa0734570

M. sativa cultivar zhongmu-4 / Msa0734570

KEGG: -
GO: GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564
PFAM: PF07714.20

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0734570	XP_003615804.1	96.791	592	18	1	1	592	1	591	0.0	1197

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0734570	sp\|O22558\|STY8_ARATH	32.852	277	171	6	317	586	269	537	4.64e-50	184

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0734570	G7KEB1	96.791	592	18	1	1	592	1	591	0.0	1197

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0734570	Msa0813510	0.852447	4.588956e-61	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0734570	MtrunA17_Chr5g0431191	96.791	592	18	1	1	592	1	591	0.0	1197
Msa0734570	MtrunA17_Chr3g0105891	69.103	602	162	8	1	592	1	588	0.0	836
Msa0734570	MtrunA17_Chr1g0211611	32.609	276	173	6	316	586	285	552	1.56e-49	181
Msa0734570	MtrunA17_Chr3g0143531	34.866	261	159	6	331	586	22	276	2.99e-49	172
Msa0734570	MtrunA17_Chr5g0406251	26.772	508	303	17	125	584	58	544	6.88e-48	176
Msa0734570	MtrunA17_Chr1g0202101	33.591	259	160	6	327	580	276	527	1.03e-46	172
Msa0734570	MtrunA17_Chr3g0090261	32.000	275	171	6	320	584	68	336	1.80e-41	153
Msa0734570	MtrunA17_Chr4g0075541	28.428	299	186	9	302	584	55	341	6.80e-37	141
Msa0734570	MtrunA17_Chr4g0059121	28.261	276	178	7	321	584	45	312	1.10e-35	137
Msa0734570	MtrunA17_Chr2g0282321	27.273	319	199	11	278	586	124	419	3.43e-35	138

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0734570	AT5G58520.1	60.848	613	208	9	1	590	1	604	0.0	727
Msa0734570	AT5G07140.1	59.328	595	225	7	1	590	1	583	0.0	667
Msa0734570	AT2G17700.1	32.852	277	171	6	317	586	269	537	4.72e-51	184
Msa0734570	AT4G35780.1	34.066	273	163	8	322	586	280	543	3.34e-49	180
Msa0734570	AT4G38470.2	31.392	309	192	8	289	584	238	539	4.12e-48	177
Msa0734570	AT4G38470.1	31.392	309	192	8	289	584	238	539	5.32e-48	177
Msa0734570	AT4G31170.7	34.146	246	150	5	345	584	146	385	1.52e-39	150
Msa0734570	AT4G31170.6	34.146	246	150	5	345	584	146	385	1.52e-39	150
Msa0734570	AT4G31170.5	34.146	246	150	5	345	584	146	385	1.52e-39	150
Msa0734570	AT4G31170.1	34.146	246	150	5	345	584	146	385	1.52e-39	150

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Find 166 sgRNAs with CRISPR-Local

Find 284 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGGCCAAAAGGTGGTGGG+TGG	0.666108	5_1:+48776827	None:intergenic
AAAGGTGGTGGGTGGTAGTG+TGG	0.488575	5_1:+48776835	None:intergenic
AAATTTGGTTGGCAGTCCTT+GGG	0.458152	5_1:+48772521	None:intergenic
AACTTCAGGTCTAAGGCCAC+AGG	0.552416	5_1:+48772544	None:intergenic
AAGAAAGGCCAAAAGGTGGT+GGG	0.604665	5_1:+48776824	None:intergenic
AAGAACAAGTTTCATAAACT+TGG	0.480591	5_1:-48776596	Msa0734570:CDS
AAGAAGTAGCTTCTGATCTG+TGG	0.612811	5_1:+48776669	None:intergenic
AAGCTGAAAGGGTGTGAAAA+AGG	0.373240	5_1:-48774833	Msa0734570:CDS
AAGCTTTCATTTGGACTTTG+TGG	0.376985	5_1:-48775133	Msa0734570:CDS
AAGGGGTCTACATGGGCAAA+AGG	0.417460	5_1:-48774868	Msa0734570:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TAGAATCAAGTTCAATTCCT+AGG	+	chr5_1:48773045-48773064	None:intergenic	30.0%
TACCTCATCTTTCATTGTAT+CGG	-	chr5_1:48774168-48774187	Msa0734570:intron	30.0%
TGGACCTAATTCTTATAAAG+GGG	-	chr5_1:48774279-48774298	Msa0734570:intron	30.0%
TAGACCCCTTTATAAGAATT+AGG	+	chr5_1:48774286-48774305	None:intergenic	30.0%
ATTTGTGTGGATGATAATCA+TGG	-	chr5_1:48774436-48774455	Msa0734570:intron	30.0%
TTTGTGTGGATGATAATCAT+GGG	-	chr5_1:48774437-48774456	Msa0734570:intron	30.0%
AATGCTTGTTTGGGAAATAT+GGG	-	chr5_1:48774649-48774668	Msa0734570:CDS	30.0%
AGTATGAAACTGATGGTTAT+AGG	-	chr5_1:48774710-48774729	Msa0734570:CDS	30.0%
AAAGGCAATTATGTATAGCT+AGG	+	chr5_1:48774830-48774849	None:intergenic	30.0%
GTATCAGATACAGTATGTAT+CGG	-	chr5_1:48774890-48774909	Msa0734570:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_1	gene	48772302	48776884	48772302	ID=Msa0734570;Name=Msa0734570
chr5_1	mRNA	48772302	48776884	48772302	ID=Msa0734570-mRNA-1;Parent=Msa0734570;Name=Msa0734570-mRNA-1;_AED=0.08;_eAED=0.08;_QI=98\|1\|1\|1\|1\|1\|3\|116\|592
chr5_1	exon	48772302	48772708	48772302	ID=Msa0734570-mRNA-1:exon:13916;Parent=Msa0734570-mRNA-1
chr5_1	exon	48774439	48775531	48774439	ID=Msa0734570-mRNA-1:exon:13915;Parent=Msa0734570-mRNA-1
chr5_1	exon	48776392	48776884	48776392	ID=Msa0734570-mRNA-1:exon:13914;Parent=Msa0734570-mRNA-1
chr5_1	five_prime_UTR	48776787	48776884	48776787	ID=Msa0734570-mRNA-1:five_prime_utr;Parent=Msa0734570-mRNA-1
chr5_1	CDS	48776392	48776786	48776392	ID=Msa0734570-mRNA-1:cds;Parent=Msa0734570-mRNA-1
chr5_1	CDS	48774439	48775531	48774439	ID=Msa0734570-mRNA-1:cds;Parent=Msa0734570-mRNA-1
chr5_1	CDS	48772418	48772708	48772418	ID=Msa0734570-mRNA-1:cds;Parent=Msa0734570-mRNA-1
chr5_1	three_prime_UTR	48772302	48772417	48772302	ID=Msa0734570-mRNA-1:three_prime_utr;Parent=Msa0734570-mRNA-1

Gene Sequence

>Msa0734570

ATGGCTGCAGCCTTAGAGTGCTGGCCAACTCGCACCACAACCACTATCCCCGATGAAGACACAGTTGAACAACAACAAGTCCTCATGAAAACTCACCACAGATCAGAAGCTACTTCTTCTTCTTCTTCTCTTTCTCTTCCTTCCAAAGACTCTTCCATGCTCATCAACAAGAACAAGTTTCATAAACTTGGTCGTAATCTTTCTGATGCAATCACATCTTTCAAAAACACACTCAACCTTAATAATAATAGTAACAATCCTGAGTCTCCTCCTTCTTCTAAGAAACTTGCTTGGGCTTCTGTTCTTCGTAATCTTACTCAACTCTATCCTGGAACTCAGCTTCCTGATAATCTTATTTCTAGCATTCGTAATCATTACAATTCTCTTCCTCTCAGTTATGCACAGGCTGAATTTGATATGAAGGATGTGTTTCTTCACATCAAGTTGATGGAACAGGCATTGGAGAGTGATCAGCCTGCGATTTTGATTCAACAAGAGAGTGGTGGTCATGATGGTGAGGTTCAGGCTCAAGGGTCTGTTTTGAAGCTCAATTTTGCTTGCAACGCGCTCGTTTCATGGCCTGCAATGTCGGTTGCGTTGGATAGTTTCTCCATTTGTAGCAAGAGGGCACAGATCTTTGAGAAGAAAGGTTTCACCTTAGGGGTTGTTCTTCTTGTAGTTAGGTCCGGTCATGAAAAATTGGTCAAAACCCGAGTTGAGAATGCTTTGAAGTTTGCGATAAAGAAGCCCAAAATGGGTTCTGTGAATGTGAAGCTTTCATTTGGACTTTGTGGGTGTCAGGAAGAGAGTTTCAAGGGGAGAGAATTAGGGGAGATTGGAGAAGATAGTGGTAGTGGAAAGGAGTTTGAGAATTCTAGCCAAAAGATTCAGCTTCAGACGCCTTTGCCTACCTCATCTTTCATTGTATCGGTCGATGAATGGCAGACGATAAAGTCGGGTGGTGATGAGATTGAGAAATGGTTATTGAATGCTGATTATGTTGAGTTTACAGAACAGATTGGACCTAATTCTTATAAAGGGGTCTACATGGGCAAAAGGGTTGGAATCGAGAAGCTGAAAGGGTGTGAAAAAGGAAATGCTTACGAGTTTGAGCTCCACAAAGATCTTCTGGAACTGATGACTTGTGGCCATAGAAACATTCTGCAGTTCTGTGGTATTTGTGTGGATGATAATCATGGGTTATGTGTGGTGACTAAGTTCATGGTAGGTAGATCTGTACACGACTTAATGTTAAAGAACAAGAAGCTTCAGAGTAAGGATATTGTTAGAATTGCGGTTGATGTAGCTGAGGGGATCAAGTTTATGAATGATCATGGTGTTGCATACAGAGATCTTAATACGCAGAGGATTCTGTTAGATAGGCATGGGAATGCTTGTTTGGGAAATATGGGTGTTGTCACTGCCTGCAAGAGTGTTGGAGAAGCAATGGAGTATGAAACTGATGGTTATAGGTGGCTTGCTCCTGAGATAATTGCAGGAGACCCTGAAAGCGTGACAGAGACATCGATGAGCAATGTTTATAGTTATGGCATGGTAATTTGGGAGATGGTTAGTGGTGAGGCAGCATATTCTGCACTTTCTCCTGTGCAGGCAGCAGTTGGCATTGCAGCCTGTGGCCTTAGACCTGAAGTTCCCAAGGACTGCCAACCAAATTTAAAATACATTATGACAAAATGCTGGAACAATACCCCTTCTAAACGTCCTCAATTCTCCGATATTTTAGCCATATTGCTGCAACCATACAACAAAAATAGGTAA

Protein sequence

>Msa0734570

MAAALECWPTRTTTTIPDEDTVEQQQVLMKTHHRSEATSSSSSLSLPSKDSSMLINKNKFHKLGRNLSDAITSFKNTLNLNNNSNNPESPPSSKKLAWASVLRNLTQLYPGTQLPDNLISSIRNHYNSLPLSYAQAEFDMKDVFLHIKLMEQALESDQPAILIQQESGGHDGEVQAQGSVLKLNFACNALVSWPAMSVALDSFSICSKRAQIFEKKGFTLGVVLLVVRSGHEKLVKTRVENALKFAIKKPKMGSVNVKLSFGLCGCQEESFKGRELGEIGEDSGSGKEFENSSQKIQLQTPLPTSSFIVSVDEWQTIKSGGDEIEKWLLNADYVEFTEQIGPNSYKGVYMGKRVGIEKLKGCEKGNAYEFELHKDLLELMTCGHRNILQFCGICVDDNHGLCVVTKFMVGRSVHDLMLKNKKLQSKDIVRIAVDVAEGIKFMNDHGVAYRDLNTQRILLDRHGNACLGNMGVVTACKSVGEAMEYETDGYRWLAPEIIAGDPESVTETSMSNVYSYGMVIWEMVSGEAAYSALSPVQAAVGIAACGLRPEVPKDCQPNLKYIMTKCWNNTPSKRPQFSDILAILLQPYNKNR*