Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0736140 | XP_039690667.1 | 82.038 | 952 | 140 | 7 | 1 | 923 | 1 | 950 | 0.0 | 1555 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0736140 | sp|B6SFA4|MAA3_ARATH | 37.417 | 302 | 183 | 6 | 545 | 844 | 454 | 751 | 2.71e-49 | 191 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0736140 | A0A396HU03 | 81.690 | 923 | 138 | 7 | 1 | 894 | 1 | 921 | 0.0 | 1504 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0736140 | Msa0815320 | 0.856194 | 3.794734e-62 | -8.615850e-47 |
| Msa0352010 | Msa0736140 | 0.811815 | 5.796123e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0736140 | MtrunA17_Chr5g0433471 | 81.690 | 923 | 138 | 7 | 1 | 894 | 1 | 921 | 0.0 | 1504 |
| Msa0736140 | MtrunA17_Chr5g0433511 | 63.868 | 941 | 234 | 14 | 17 | 885 | 7 | 913 | 0.0 | 1101 |
| Msa0736140 | MtrunA17_Chr5g0433371 | 56.987 | 916 | 345 | 13 | 22 | 898 | 18 | 923 | 0.0 | 992 |
| Msa0736140 | MtrunA17_Chr3g0109541 | 57.563 | 919 | 335 | 14 | 21 | 894 | 14 | 922 | 0.0 | 980 |
| Msa0736140 | MtrunA17_Chr5g0433321 | 54.075 | 908 | 351 | 14 | 22 | 891 | 17 | 896 | 0.0 | 940 |
| Msa0736140 | MtrunA17_Chr5g0433361 | 54.693 | 927 | 310 | 18 | 6 | 881 | 13 | 880 | 0.0 | 927 |
| Msa0736140 | MtrunA17_Chr5g0433421 | 68.100 | 558 | 160 | 6 | 346 | 899 | 470 | 1013 | 0.0 | 739 |
| Msa0736140 | MtrunA17_Chr5g0433421 | 56.823 | 491 | 165 | 14 | 15 | 469 | 9 | 488 | 1.48e-162 | 502 |
| Msa0736140 | MtrunA17_Chr3g0109551 | 43.743 | 935 | 441 | 18 | 25 | 878 | 16 | 946 | 0.0 | 697 |
| Msa0736140 | MtrunA17_Chr3g0094211 | 36.508 | 882 | 490 | 22 | 21 | 867 | 17 | 863 | 3.63e-167 | 514 |
| Msa0736140 | MtrunA17_Chr5g0433351 | 54.455 | 505 | 174 | 9 | 13 | 497 | 2 | 470 | 2.86e-165 | 491 |
| Msa0736140 | MtrunA17_Chr8g0375181 | 36.865 | 906 | 491 | 20 | 14 | 871 | 79 | 951 | 1.00e-164 | 534 |
| Msa0736140 | MtrunA17_Chr8g0375191 | 36.497 | 885 | 493 | 18 | 21 | 871 | 25 | 874 | 5.02e-157 | 511 |
| Msa0736140 | MtrunA17_Chr8g0375151 | 36.824 | 869 | 468 | 21 | 51 | 871 | 8 | 843 | 1.42e-150 | 493 |
| Msa0736140 | MtrunA17_Chr5g0433341 | 77.957 | 186 | 41 | 0 | 542 | 727 | 2 | 187 | 2.84e-96 | 300 |
| Msa0736140 | MtrunA17_Chr5g0433331 | 78.571 | 168 | 35 | 1 | 731 | 898 | 2 | 168 | 1.98e-83 | 265 |
| Msa0736140 | MtrunA17_Chr3g0117771 | 69.022 | 184 | 52 | 2 | 43 | 226 | 124 | 302 | 1.36e-82 | 268 |
| Msa0736140 | MtrunA17_Chr8g0375861 | 29.552 | 670 | 398 | 22 | 22 | 650 | 23 | 659 | 1.45e-61 | 228 |
| Msa0736140 | MtrunA17_Chr8g0375871 | 29.552 | 670 | 398 | 22 | 22 | 650 | 23 | 659 | 1.68e-61 | 228 |
| Msa0736140 | MtrunA17_Chr8g0343741 | 38.730 | 315 | 180 | 8 | 541 | 850 | 961 | 1267 | 1.52e-52 | 200 |
| Msa0736140 | MtrunA17_Chr5g0422511 | 36.275 | 306 | 190 | 5 | 545 | 849 | 450 | 751 | 2.86e-48 | 185 |
| Msa0736140 | MtrunA17_Chr1g0173701 | 36.667 | 270 | 167 | 4 | 583 | 851 | 108 | 374 | 1.24e-46 | 172 |
| Msa0736140 | MtrunA17_Chr2g0334291 | 38.507 | 335 | 166 | 11 | 542 | 844 | 1741 | 2067 | 1.37e-46 | 182 |
| Msa0736140 | MtrunA17_Chr4g0030281 | 81.731 | 104 | 19 | 0 | 43 | 146 | 329 | 432 | 9.64e-45 | 172 |
| Msa0736140 | MtrunA17_Chr5g0400101 | 34.680 | 297 | 183 | 6 | 552 | 845 | 617 | 905 | 4.81e-40 | 160 |
| Msa0736140 | MtrunA17_Chr7g0257921 | 38.511 | 309 | 161 | 14 | 555 | 851 | 350 | 641 | 2.50e-31 | 131 |
| Msa0736140 | MtrunA17_Chr5g0435821 | 54.206 | 107 | 44 | 1 | 765 | 871 | 11 | 112 | 4.65e-29 | 123 |
| Msa0736140 | MtrunA17_Chr1g0165651 | 32.333 | 300 | 168 | 10 | 550 | 829 | 630 | 914 | 9.61e-25 | 111 |
| Msa0736140 | MtrunA17_Chr5g0394941 | 30.769 | 312 | 178 | 12 | 549 | 837 | 511 | 807 | 2.58e-22 | 103 |
| Msa0736140 | MtrunA17_Chr2g0304151 | 30.769 | 312 | 178 | 12 | 549 | 837 | 511 | 807 | 3.14e-22 | 103 |
| Msa0736140 | MtrunA17_Chr1g0165031 | 30.078 | 256 | 157 | 9 | 577 | 820 | 1130 | 1375 | 4.15e-17 | 87.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0736140 | AT1G65810.2 | 45.139 | 864 | 401 | 15 | 22 | 860 | 22 | 837 | 0.0 | 688 |
| Msa0736140 | AT1G65810.1 | 45.139 | 864 | 401 | 15 | 22 | 860 | 22 | 837 | 0.0 | 688 |
| Msa0736140 | AT1G65810.3 | 45.139 | 864 | 401 | 15 | 22 | 860 | 22 | 837 | 0.0 | 687 |
| Msa0736140 | AT5G37150.1 | 41.657 | 905 | 413 | 16 | 15 | 881 | 2 | 829 | 0.0 | 645 |
| Msa0736140 | AT1G65780.1 | 43.017 | 895 | 427 | 18 | 22 | 873 | 11 | 865 | 0.0 | 640 |
| Msa0736140 | AT5G52090.1 | 45.288 | 711 | 297 | 15 | 191 | 865 | 1 | 655 | 0.0 | 555 |
| Msa0736140 | AT5G37140.1 | 46.761 | 710 | 335 | 19 | 181 | 881 | 7 | 682 | 0.0 | 555 |
| Msa0736140 | AT4G05540.1 | 45.770 | 721 | 323 | 20 | 138 | 832 | 11 | 689 | 0.0 | 540 |
| Msa0736140 | AT5G37165.1 | 51.991 | 427 | 191 | 8 | 458 | 881 | 1 | 416 | 5.56e-132 | 403 |
| Msa0736140 | AT5G37030.1 | 62.759 | 290 | 106 | 2 | 574 | 862 | 348 | 636 | 1.53e-118 | 375 |
| Msa0736140 | AT5G37030.1 | 35.200 | 375 | 199 | 8 | 15 | 385 | 2 | 336 | 1.95e-48 | 183 |
| Msa0736140 | AT5G37160.1 | 33.492 | 421 | 195 | 13 | 28 | 381 | 24 | 426 | 2.55e-53 | 193 |
| Msa0736140 | AT2G19120.1 | 37.658 | 316 | 182 | 8 | 541 | 850 | 741 | 1047 | 7.97e-52 | 197 |
| Msa0736140 | AT4G15570.2 | 37.417 | 302 | 183 | 6 | 545 | 844 | 365 | 662 | 1.26e-50 | 191 |
| Msa0736140 | AT4G15570.4 | 37.417 | 302 | 183 | 6 | 545 | 844 | 365 | 662 | 1.26e-50 | 191 |
| Msa0736140 | AT4G15570.3 | 37.417 | 302 | 183 | 6 | 545 | 844 | 454 | 751 | 2.75e-50 | 191 |
| Msa0736140 | AT4G15570.1 | 37.417 | 302 | 183 | 6 | 545 | 844 | 454 | 751 | 2.75e-50 | 191 |
| Msa0736140 | AT4G30100.2 | 36.893 | 309 | 186 | 8 | 541 | 846 | 904 | 1206 | 6.90e-49 | 189 |
| Msa0736140 | AT4G30100.1 | 36.893 | 309 | 186 | 8 | 541 | 846 | 904 | 1206 | 6.90e-49 | 189 |
| Msa0736140 | AT1G16800.1 | 35.077 | 325 | 183 | 8 | 545 | 845 | 1560 | 1880 | 9.80e-43 | 170 |
| Msa0736140 | AT1G16800.3 | 35.185 | 324 | 182 | 8 | 545 | 844 | 1602 | 1921 | 1.02e-42 | 170 |
| Msa0736140 | AT1G16800.2 | 35.185 | 324 | 182 | 8 | 545 | 844 | 1672 | 1991 | 1.03e-42 | 170 |
| Msa0736140 | AT5G47010.1 | 34.323 | 303 | 188 | 6 | 546 | 845 | 623 | 917 | 3.11e-41 | 165 |
| Msa0736140 | AT2G03270.1 | 35.452 | 299 | 168 | 12 | 549 | 837 | 339 | 622 | 1.65e-29 | 125 |
| Msa0736140 | AT5G35970.1 | 32.095 | 296 | 174 | 9 | 550 | 829 | 638 | 922 | 1.15e-25 | 114 |
| Msa0736140 | AT1G05460.2 | 31.290 | 310 | 178 | 12 | 550 | 837 | 513 | 809 | 4.57e-24 | 109 |
| Msa0736140 | AT1G05460.1 | 30.530 | 321 | 188 | 12 | 549 | 847 | 512 | 819 | 8.57e-24 | 108 |
| Msa0736140 | AT1G08840.1 | 30.483 | 269 | 150 | 9 | 578 | 827 | 1018 | 1268 | 1.01e-18 | 92.4 |
| Msa0736140 | AT1G08840.4 | 30.483 | 269 | 150 | 9 | 578 | 827 | 1050 | 1300 | 1.06e-18 | 92.4 |
| Msa0736140 | AT1G08840.3 | 30.483 | 269 | 150 | 9 | 578 | 827 | 1053 | 1303 | 1.12e-18 | 92.4 |
| Msa0736140 | AT1G08840.2 | 30.483 | 269 | 150 | 9 | 578 | 827 | 1037 | 1287 | 1.13e-18 | 92.4 |
| Msa0736140 | AT2G38770.1 | 30.268 | 261 | 150 | 10 | 577 | 820 | 1120 | 1365 | 1.13e-15 | 82.8 |
Find 144 sgRNAs with CRISPR-Local
Find 231 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGACAACAAATATTCGTATT+TGG | 0.189870 | 5_1:+52095390 | Msa0736140:CDS |
| ATGCTAATGTCAAACTTATA+TGG | 0.200884 | 5_1:+52095947 | Msa0736140:CDS |
| CTTCAACATTGCATTCTTAT+AGG | 0.208240 | 5_1:+52096930 | Msa0736140:CDS |
| AGCTGCAAAGTTTGCATGTT+TGG | 0.229288 | 5_1:+52095817 | Msa0736140:CDS |
| TAGCCAATAGTGATTCTATT+TGG | 0.229657 | 5_1:+52098074 | Msa0736140:CDS |
| ATTTGATAGAACAAGGATTT+TGG | 0.230297 | 5_1:-52095113 | None:intergenic |
| CAAATTCCTCAAGGGACTTA+TGG | 0.262055 | 5_1:-52096263 | None:intergenic |
| CTTGAATTGCTCAGGTCTAT+TGG | 0.288768 | 5_1:+52096579 | Msa0736140:CDS |
| GACCTATATTCAAACTTATT+AGG | 0.290148 | 5_1:+52095026 | Msa0736140:CDS |
| CTATAATTCTCTATCTAAAA+AGG | 0.295244 | 5_1:-52098743 | None:intergenic |
| TTTCGGCAAGTGTGTGTATA+AGG | 0.301266 | 5_1:-52096514 | None:intergenic |
| AGATACTGTCTTTGGATATT+AGG | 0.305787 | 5_1:+52098037 | Msa0736140:intron |
| AGTTTGTAAAGAAGAGATTT+CGG | 0.307316 | 5_1:+52096457 | Msa0736140:CDS |
| TTTGCATGGAAACAAGCTTA+TGG | 0.309050 | 5_1:-52097191 | None:intergenic |
| GTTTGTAAAGAAGAGATTTC+GGG | 0.309508 | 5_1:+52096458 | Msa0736140:CDS |
| AAGAAGTATGTTTGAGAGAT+TGG | 0.310939 | 5_1:+52097114 | Msa0736140:CDS |
| GCTAAGGGTAAAGAGAAATT+TGG | 0.314735 | 5_1:+52097322 | Msa0736140:CDS |
| ATTGCTGATAATTGTGGATT+TGG | 0.318750 | 5_1:+52097091 | Msa0736140:CDS |
| AATTTCAGAAGCAAACATTA+TGG | 0.323134 | 5_1:-52098662 | None:intergenic |
| CTTGGTCCTCTAGGTTTCCT+TGG | 0.324989 | 5_1:-52098441 | None:intergenic |
| TCAAACATAATTCCTCCTTT+TGG | 0.325376 | 5_1:+52098627 | Msa0736140:three_prime_UTR |
| TATAATAAAAGTTTCCTTGA+TGG | 0.331006 | 5_1:+52097265 | Msa0736140:CDS |
| TTTGAGAGATTGGTATTGTT+AGG | 0.349863 | 5_1:+52097124 | Msa0736140:CDS |
| GAGCATGATACGTATGGTTT+AGG | 0.349947 | 5_1:+52096120 | Msa0736140:CDS |
| GTTAGTGTTCGTTCTGTTGA+CGG | 0.352563 | 5_1:+52097825 | Msa0736140:CDS |
| TGCTAATGTCAAACTTATAT+GGG | 0.352761 | 5_1:+52095948 | Msa0736140:CDS |
| TTAGGTGACATTGTGCTCTT+TGG | 0.353780 | 5_1:+52096138 | Msa0736140:CDS |
| TTGTGTGCAGATACTGTCTT+TGG | 0.359093 | 5_1:+52098029 | Msa0736140:intron |
| GCAAGTGAAATGAAAGATTT+CGG | 0.359478 | 5_1:-52096531 | None:intergenic |
| TGTGTACAGTTTAATAGAAC+TGG | 0.360171 | 5_1:-52096817 | None:intergenic |
| ATATCTACTGTAAGATCTAA+TGG | 0.363473 | 5_1:+52097879 | Msa0736140:CDS |
| CGCTATTCCATTGCAGCTAC+CGG | 0.368033 | 5_1:+52096905 | Msa0736140:CDS |
| GCAATGAGATCTCCAGCTTC+TGG | 0.370895 | 5_1:-52095176 | None:intergenic |
| CAGTTATCCAGGTTTAGTTA+TGG | 0.373818 | 5_1:+52096185 | Msa0736140:CDS |
| TGCCGATGAGGACAAGAAAT+TGG | 0.375041 | 5_1:+52098141 | Msa0736140:CDS |
| AAAGCAAACCTAGTATTCTA+AGG | 0.375799 | 5_1:-52096704 | None:intergenic |
| TTTCCAAATAGAATCACTAT+TGG | 0.383545 | 5_1:-52098077 | None:intergenic |
| CCATCTATTTCAGAGTTAGA+TGG | 0.383664 | 5_1:-52096678 | None:intergenic |
| GATGGTTTCCTTAGAATACT+AGG | 0.397818 | 5_1:+52096696 | Msa0736140:CDS |
| CTCTAGCAGTGGAGGCATAA+AGG | 0.400028 | 5_1:-52094991 | None:intergenic |
| CTTGAACCTGGCTTGATACA+AGG | 0.400444 | 5_1:-52096607 | None:intergenic |
| ATTATTCTTCCTGAACTCAA+TGG | 0.411055 | 5_1:+52096735 | Msa0736140:CDS |
| AAGGTTGCATAGTTTAGTTA+TGG | 0.412898 | 5_1:+52096089 | Msa0736140:CDS |
| AAATTAAACGTGCGTTCGAC+AGG | 0.414329 | 5_1:-52096782 | None:intergenic |
| TATTTGTTGTCATGTTCATC+AGG | 0.419253 | 5_1:-52095379 | None:intergenic |
| CCATCTAACTCTGAAATAGA+TGG | 0.419828 | 5_1:+52096678 | Msa0736140:CDS |
| TTCGAGCTCTTGAATTGCTC+AGG | 0.420986 | 5_1:+52096571 | Msa0736140:CDS |
| AGGTAAACTGCATACATCTT+TGG | 0.423455 | 5_1:-52095359 | None:intergenic |
| TTCAGGAAGAATAATTGAAC+TGG | 0.424783 | 5_1:-52096727 | None:intergenic |
| TGACCTCTCCCATTGAGTTC+AGG | 0.427701 | 5_1:-52096744 | None:intergenic |
| TTCTGATGCTCCGGCTGTCA+TGG | 0.430761 | 5_1:+52097234 | Msa0736140:CDS |
| GATAATTCAAAGCCTTAGAA+AGG | 0.433219 | 5_1:+52097396 | Msa0736140:CDS |
| ATTCAAGTCATCTACTCTCT+TGG | 0.434569 | 5_1:-52095216 | None:intergenic |
| ATATGGGGACCACCAGGGAC+TGG | 0.438660 | 5_1:+52095964 | Msa0736140:CDS |
| TTCAAGTCATCTACTCTCTT+GGG | 0.449605 | 5_1:-52095215 | None:intergenic |
| TGATTCACCAGCTTCATACT+TGG | 0.453419 | 5_1:-52098459 | None:intergenic |
| TTATTCTTCCTGAACTCAAT+GGG | 0.459864 | 5_1:+52096736 | Msa0736140:CDS |
| ATCATTTAGAAACTGGATCA+TGG | 0.460114 | 5_1:-52096211 | None:intergenic |
| ATGAAAGTAGACAGTTATCC+AGG | 0.462499 | 5_1:+52096174 | Msa0736140:CDS |
| AGCTTCATACTTGGTCCTCT+AGG | 0.465642 | 5_1:-52098450 | None:intergenic |
| TAGCTCTTTGTCTATTTGAA+AGG | 0.467396 | 5_1:-52097920 | None:intergenic |
| TGTGCGGTGTTCGTTCGCTA+AGG | 0.469822 | 5_1:+52098484 | Msa0736140:CDS |
| TGGAGATCTCATTGCTTTCA+CGG | 0.477848 | 5_1:+52095184 | Msa0736140:CDS |
| TTCTAAATCAAAATCTCTAC+AGG | 0.481687 | 5_1:+52094417 | Msa0736140:CDS |
| GGAAAATATGAACCAGAAGC+TGG | 0.483286 | 5_1:+52095164 | Msa0736140:CDS |
| CTCATCCGATTCATATTCCT+CGG | 0.484865 | 5_1:-52096400 | None:intergenic |
| AGGCGATGAGAAACAACTTC+CGG | 0.485744 | 5_1:+52096950 | Msa0736140:CDS |
| GATGACGAGAATGCAGCTCT+TGG | 0.488635 | 5_1:+52094356 | Msa0736140:CDS |
| GGAGTCAGAGGGCGAACACC+TGG | 0.497458 | 5_1:+52095427 | Msa0736140:CDS |
| GAGAAATCATCAGAAATTGA+TGG | 0.498026 | 5_1:+52098244 | Msa0736140:CDS |
| AATAACATAAGCAACATTGT+AGG | 0.500024 | 5_1:-52095252 | None:intergenic |
| GTTGGAGAATTAAAAGTCTC+GGG | 0.502680 | 5_1:-52094954 | None:intergenic |
| TCTAATGGAAGTGGCAAAGT+AGG | 0.506365 | 5_1:+52097894 | Msa0736140:CDS |
| AGCCAATTTCTTGTCCTCAT+CGG | 0.512736 | 5_1:-52098143 | None:intergenic |
| CTCCTAATAAGTTTGAATAT+AGG | 0.515771 | 5_1:-52095028 | None:intergenic |
| TGTTGGAGAATTAAAAGTCT+CGG | 0.516648 | 5_1:-52094955 | None:intergenic |
| AAACTTATATGGGGACCACC+AGG | 0.518565 | 5_1:+52095958 | Msa0736140:CDS |
| AAATTGATGGTTCTTCCTCT+AGG | 0.520805 | 5_1:+52098257 | Msa0736140:CDS |
| TATGGGGACCACCAGGGACT+GGG | 0.521092 | 5_1:+52095965 | Msa0736140:CDS |
| AATTGAAAGTTTCATGACAC+TGG | 0.522790 | 5_1:+52096431 | Msa0736140:CDS |
| CATTGCCGAGGAATATGAAT+CGG | 0.523952 | 5_1:+52096395 | Msa0736140:CDS |
| GTGCGGTGTTCGTTCGCTAA+GGG | 0.526184 | 5_1:+52098485 | Msa0736140:CDS |
| GAATATCCTTGTATCAAGCC+AGG | 0.528351 | 5_1:+52096601 | Msa0736140:CDS |
| TCTTGTCCTCATCGGCATCA+TGG | 0.528366 | 5_1:-52098135 | None:intergenic |
| AAGCATACATTTCTCCATCA+AGG | 0.528385 | 5_1:-52097279 | None:intergenic |
| ACTGTAAGATCTAATGGAAG+TGG | 0.529476 | 5_1:+52097885 | Msa0736140:CDS |
| ATAATTCAAAGCCTTAGAAA+GGG | 0.533137 | 5_1:+52097397 | Msa0736140:CDS |
| ACAAAGAAGAAAGTTAGCAT+TGG | 0.535667 | 5_1:+52097717 | Msa0736140:CDS |
| TTTCATTAACAAATTCCTCA+AGG | 0.536867 | 5_1:-52096272 | None:intergenic |
| TCACTTGAGCATGATACGTA+TGG | 0.537216 | 5_1:+52096114 | Msa0736140:CDS |
| AGGATTATGTGCAGAAGTTG+TGG | 0.537283 | 5_1:+52096367 | Msa0736140:CDS |
| TTCATTAACAAATTCCTCAA+GGG | 0.538823 | 5_1:-52096271 | None:intergenic |
| ATAACATAAGCAACATTGTA+GGG | 0.540253 | 5_1:-52095251 | None:intergenic |
| TAGCTTTCTTCCATGACAGC+CGG | 0.543420 | 5_1:-52097244 | None:intergenic |
| TGAAGACCCGGTAGCTGCAA+TGG | 0.553800 | 5_1:-52096912 | None:intergenic |
| TCTTCAGACTGTGTCCTCCT+CGG | 0.553884 | 5_1:-52097345 | None:intergenic |
| CATGGAAACAAGCTTATGGA+TGG | 0.557115 | 5_1:-52097187 | None:intergenic |
| GAGCTAATGTTGCAATGACA+AGG | 0.558283 | 5_1:+52097937 | Msa0736140:CDS |
| TAGAGGACCAAGTATGAAGC+TGG | 0.559745 | 5_1:+52098452 | Msa0736140:CDS |
| GGATTATGTGCAGAAGTTGT+GGG | 0.559994 | 5_1:+52096368 | Msa0736140:CDS |
| ATGGATTCCATAACTAAACC+TGG | 0.562350 | 5_1:-52096192 | None:intergenic |
| AGCATTGAACTCGGAGTCAG+AGG | 0.566836 | 5_1:+52095415 | Msa0736140:CDS |
| CTTTATGCCTCCACTGCTAG+AGG | 0.566886 | 5_1:+52094992 | Msa0736140:CDS |
| GTTTGAATATAGGTCAGAGT+GGG | 0.567512 | 5_1:-52095018 | None:intergenic |
| GCTATTCCATTGCAGCTACC+GGG | 0.568261 | 5_1:+52096906 | Msa0736140:CDS |
| TCATCATAGAACTCTTTGCA+TGG | 0.568475 | 5_1:-52097205 | None:intergenic |
| GCCTCACTGAATTTGACTTG+AGG | 0.572438 | 5_1:+52095324 | Msa0736140:CDS |
| GAATGATATTTGATAGAACA+AGG | 0.573075 | 5_1:-52095120 | None:intergenic |
| GAGTGGGTTTCCTCTAGCAG+TGG | 0.573475 | 5_1:-52095002 | None:intergenic |
| GACATTGTGCTCTTTGGCAA+TGG | 0.573866 | 5_1:+52096144 | Msa0736140:CDS |
| TGCAAAACTGCAGTATTAGT+CGG | 0.574173 | 5_1:-52096057 | None:intergenic |
| TCTATTAAACTGTACACAGA+AGG | 0.598629 | 5_1:+52096822 | Msa0736140:CDS |
| CTTCCTGAACTCAATGGGAG+AGG | 0.599736 | 5_1:+52096741 | Msa0736140:CDS |
| TGATGATACTATGACACTTG+AGG | 0.602005 | 5_1:+52096347 | Msa0736140:CDS |
| TGGGTTTCCTCTAGCAGTGG+AGG | 0.606224 | 5_1:-52094999 | None:intergenic |
| TTAGATGGTTCAAAGCAAGC+AGG | 0.606292 | 5_1:-52096663 | None:intergenic |
| ATATTCAAACTTATTAGGAG+TGG | 0.606978 | 5_1:+52095031 | Msa0736140:CDS |
| TATTTGGAAAGCATTGAACT+CGG | 0.611582 | 5_1:+52095406 | Msa0736140:CDS |
| AAAGTAATAGTAGTGATGCA+AGG | 0.613380 | 5_1:+52094324 | Msa0736140:CDS |
| AGAATGCAATGTTGAAGACC+CGG | 0.616595 | 5_1:-52096924 | None:intergenic |
| AAAATCTGTATCAGAAACTG+AGG | 0.625678 | 5_1:-52097799 | None:intergenic |
| AAGAGTACAAAAGAATACAA+TGG | 0.625861 | 5_1:+52095143 | Msa0736140:CDS |
| AAAGAGAAATTTGGCCGAGG+AGG | 0.626517 | 5_1:+52097331 | Msa0736140:CDS |
| CGGTAGCTGCAATGGAATAG+CGG | 0.631790 | 5_1:-52096904 | None:intergenic |
| AGTTTGAATATAGGTCAGAG+TGG | 0.634423 | 5_1:-52095019 | None:intergenic |
| AGTTTCAAATTTATACACAA+CGG | 0.638573 | 5_1:+52098557 | Msa0736140:three_prime_UTR |
| TTGTTACCATGATGCCGATG+AGG | 0.644161 | 5_1:+52098129 | Msa0736140:CDS |
| GGTAAAGAGAAATTTGGCCG+AGG | 0.644287 | 5_1:+52097328 | Msa0736140:CDS |
| GCTAATGTCAAACTTATATG+GGG | 0.644828 | 5_1:+52095949 | Msa0736140:CDS |
| ATTAGTCGGAGCACATGTCA+AGG | 0.644967 | 5_1:-52096043 | None:intergenic |
| ATGTTGCAATGACAAGGGCA+AGG | 0.647862 | 5_1:+52097943 | Msa0736140:CDS |
| TCCGGCATTAGTCAAAAGCA+AGG | 0.651579 | 5_1:+52096968 | Msa0736140:CDS |
| AGCTAATGTTGCAATGACAA+GGG | 0.652712 | 5_1:+52097938 | Msa0736140:CDS |
| TCAAAATCTCTACAGGAACA+AGG | 0.653124 | 5_1:+52094424 | Msa0736140:CDS |
| GCATTGAACTCGGAGTCAGA+GGG | 0.653718 | 5_1:+52095416 | Msa0736140:CDS |
| GGGAACATTTGACACAACAA+TGG | 0.655256 | 5_1:-52098779 | None:intergenic |
| AACTTATATGGGGACCACCA+GGG | 0.658833 | 5_1:+52095959 | Msa0736140:CDS |
| TCCTCAAGTCAAATTCAGTG+AGG | 0.672268 | 5_1:-52095325 | None:intergenic |
| GATTATGTGCAGAAGTTGTG+GGG | 0.683227 | 5_1:+52096369 | Msa0736140:CDS |
| GATGGGCCATAAGTCCCTTG+AGG | 0.683524 | 5_1:+52096257 | Msa0736140:CDS |
| GTGATTCTTACATTGAGACA+AGG | 0.684508 | 5_1:-52095473 | None:intergenic |
| GGCAGGCCAAGGAAACCTAG+AGG | 0.743381 | 5_1:+52098435 | Msa0736140:intron |
| GTTGTGGGGAGACATTGCCG+AGG | 0.762702 | 5_1:+52096383 | Msa0736140:CDS |
| AAGCTGGTGAATCAATTGTG+CGG | 0.770509 | 5_1:+52098468 | Msa0736140:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CAATTCTAAAAATATATTAT+TGG | - | chr5_1:52094513-52094532 | None:intergenic | 10.0% |
| !!! | TTATCTTATGATTTTTATAA+TGG | + | chr5_1:52094543-52094562 | Msa0736140:intron | 10.0% |
| !!! | TCAGAAAAATATTCTTTTTT+GGG | - | chr5_1:52096237-52096256 | None:intergenic | 15.0% |
| !! | AATGAAGAATGAATATTAAA+GGG | - | chr5_1:52097656-52097675 | None:intergenic | 15.0% |
| !! | AATAATGTGAGAGTTTAAAA+GGG | - | chr5_1:52094464-52094483 | None:intergenic | 20.0% |
| !! | AAATAATGTGAGAGTTTAAA+AGG | - | chr5_1:52094465-52094484 | None:intergenic | 20.0% |
| !! | CACATTATTTGAAAATGATT+TGG | + | chr5_1:52094475-52094494 | Msa0736140:intron | 20.0% |
| !! | CTAAAAATATATTATTGGCA+GGG | - | chr5_1:52094508-52094527 | None:intergenic | 20.0% |
| !! | TCTAAAAATATATTATTGGC+AGG | - | chr5_1:52094509-52094528 | None:intergenic | 20.0% |
| !!! | AGTTCGATTTTTTAAAACAT+TGG | - | chr5_1:52094612-52094631 | None:intergenic | 20.0% |
| !! | TACATATCATTTGTTTACAT+TGG | + | chr5_1:52094842-52094861 | Msa0736140:intron | 20.0% |
| !!! | TTAAGTTATACCATTTTTAC+TGG | + | chr5_1:52094896-52094915 | Msa0736140:intron | 20.0% |
| !! | AAGGATAAACTAAATTCAAA+AGG | - | chr5_1:52095514-52095533 | None:intergenic | 20.0% |
| !! | TACTTCTACATAATTATTGA+AGG | - | chr5_1:52095702-52095721 | None:intergenic | 20.0% |
| !!! | CTCAGAAAAATATTCTTTTT+TGG | - | chr5_1:52096238-52096257 | None:intergenic | 20.0% |
| !!! | AAAAGAATATTTTTCTGAGA+TGG | + | chr5_1:52096239-52096258 | Msa0736140:CDS | 20.0% |
| !!! | AAAGAATATTTTTCTGAGAT+GGG | + | chr5_1:52096240-52096259 | Msa0736140:CDS | 20.0% |
| !! | AACAAATTAAGCCTAAAAAA+AGG | - | chr5_1:52097012-52097031 | None:intergenic | 20.0% |
| !! | TATAATAAAAGTTTCCTTGA+TGG | + | chr5_1:52097265-52097284 | Msa0736140:CDS | 20.0% |
| !!! | TTCTTTTATTAACATAGCTA+AGG | + | chr5_1:52097306-52097325 | Msa0736140:CDS | 20.0% |
| !!! | TCTTTTATTAACATAGCTAA+GGG | + | chr5_1:52097307-52097326 | Msa0736140:CDS | 20.0% |
| !! | AGAAATCATCATCTTTAATA+TGG | + | chr5_1:52097458-52097477 | Msa0736140:intron | 20.0% |
| !! | GAAATCATCATCTTTAATAT+GGG | + | chr5_1:52097459-52097478 | Msa0736140:intron | 20.0% |
| !! | GAATGAAGAATGAATATTAA+AGG | - | chr5_1:52097657-52097676 | None:intergenic | 20.0% |
| !!! | ATATGATTTTTATTACCTAG+AGG | - | chr5_1:52098275-52098294 | None:intergenic | 20.0% |
| !! | AAAATACTTAGATGGAAATA+AGG | - | chr5_1:52098354-52098373 | None:intergenic | 20.0% |
| !!! | AATTTGCAACATTTTTTTTG+TGG | + | chr5_1:52098414-52098433 | Msa0736140:intron | 20.0% |
| !! | AGTTTCAAATTTATACACAA+CGG | + | chr5_1:52098557-52098576 | Msa0736140:three_prime_UTR | 20.0% |
| !! | CTATAATTCTCTATCTAAAA+AGG | - | chr5_1:52098746-52098765 | None:intergenic | 20.0% |
| !! | TTTTGGATATTGTATTCTCA+TGG | + | chr5_1:52094381-52094400 | Msa0736140:CDS | 25.0% |
| ! | TTCTAAATCAAAATCTCTAC+AGG | + | chr5_1:52094417-52094436 | Msa0736140:CDS | 25.0% |
| !!! | CAATGTTTTAAAAACCGAAT+AGG | - | chr5_1:52094722-52094741 | None:intergenic | 25.0% |
| !!! | CTATTCGGTTTTTAAAACAT+TGG | + | chr5_1:52094720-52094739 | Msa0736140:intron | 25.0% |
| !! | GTTTTCATAACCAGTAAAAA+TGG | - | chr5_1:52094909-52094928 | None:intergenic | 25.0% |
| ! | GACCTATATTCAAACTTATT+AGG | + | chr5_1:52095026-52095045 | Msa0736140:CDS | 25.0% |
| ! | CTCCTAATAAGTTTGAATAT+AGG | - | chr5_1:52095031-52095050 | None:intergenic | 25.0% |
| ! | ATATTCAAACTTATTAGGAG+TGG | + | chr5_1:52095031-52095050 | Msa0736140:CDS | 25.0% |
| !! | ATTTGATAGAACAAGGATTT+TGG | - | chr5_1:52095116-52095135 | None:intergenic | 25.0% |
| ! | GAATGATATTTGATAGAACA+AGG | - | chr5_1:52095123-52095142 | None:intergenic | 25.0% |
| !! | AAGAGTACAAAAGAATACAA+TGG | + | chr5_1:52095143-52095162 | Msa0736140:CDS | 25.0% |
| ! | ATAACATAAGCAACATTGTA+GGG | - | chr5_1:52095254-52095273 | None:intergenic | 25.0% |
| ! | AATAACATAAGCAACATTGT+AGG | - | chr5_1:52095255-52095274 | None:intergenic | 25.0% |
| ! | TGACAACAAATATTCGTATT+TGG | + | chr5_1:52095390-52095409 | Msa0736140:CDS | 25.0% |
| !!! | AAACTTTTTTAATGATGTCC+AGG | - | chr5_1:52095448-52095467 | None:intergenic | 25.0% |
| !! | GCAGAGCTTTATATTTAAAA+AGG | - | chr5_1:52095533-52095552 | None:intergenic | 25.0% |
| ! | TGAAAAGTAAGCATTTACAT+AGG | - | chr5_1:52095610-52095629 | None:intergenic | 25.0% |
| ! | ATGCTAATGTCAAACTTATA+TGG | + | chr5_1:52095947-52095966 | Msa0736140:CDS | 25.0% |
| ! | TGCTAATGTCAAACTTATAT+GGG | + | chr5_1:52095948-52095967 | Msa0736140:CDS | 25.0% |
| ! | TTCATTAACAAATTCCTCAA+GGG | - | chr5_1:52096274-52096293 | None:intergenic | 25.0% |
| ! | TTTCATTAACAAATTCCTCA+AGG | - | chr5_1:52096275-52096294 | None:intergenic | 25.0% |
| ! | AGTTTGTAAAGAAGAGATTT+CGG | + | chr5_1:52096457-52096476 | Msa0736140:CDS | 25.0% |
| ! | ATTAAGCCTAAAAAAAGGTA+AGG | - | chr5_1:52097007-52097026 | None:intergenic | 25.0% |
| !! | TTTTAGATTGCTGATAATTG+TGG | + | chr5_1:52097085-52097104 | Msa0736140:intron | 25.0% |
| ! | ATAATTCAAAGCCTTAGAAA+GGG | + | chr5_1:52097397-52097416 | Msa0736140:CDS | 25.0% |
| !!! | AATGCAAAGTTGCTTTTTTT+GGG | - | chr5_1:52097523-52097542 | None:intergenic | 25.0% |
| !!! | TGTAACATCTACTTTTGTTT+TGG | + | chr5_1:52097680-52097699 | Msa0736140:intron | 25.0% |
| ! | ATATCTACTGTAAGATCTAA+TGG | + | chr5_1:52097879-52097898 | Msa0736140:CDS | 25.0% |
| ! | TTTCCAAATAGAATCACTAT+TGG | - | chr5_1:52098080-52098099 | None:intergenic | 25.0% |
| ! | AATTTCAGAAGCAAACATTA+TGG | - | chr5_1:52098665-52098684 | None:intergenic | 25.0% |
| AAAGTAATAGTAGTGATGCA+AGG | + | chr5_1:52094324-52094343 | Msa0736140:CDS | 30.0% | |
| ATCATTTGTTTACATTGGTG+TGG | + | chr5_1:52094847-52094866 | Msa0736140:intron | 30.0% | |
| TGTTGGAGAATTAAAAGTCT+CGG | - | chr5_1:52094958-52094977 | None:intergenic | 30.0% | |
| ! | AAGGAGATTTTGTAATCTGT+TGG | - | chr5_1:52094975-52094994 | None:intergenic | 30.0% |
| ! | TCACCAGAAAAATCATCTTT+TGG | - | chr5_1:52095281-52095300 | None:intergenic | 30.0% |
| !! | TATTTGTTGTCATGTTCATC+AGG | - | chr5_1:52095382-52095401 | None:intergenic | 30.0% |
| !! | TATTTGGAAAGCATTGAACT+CGG | + | chr5_1:52095406-52095425 | Msa0736140:CDS | 30.0% |
| GCTAATGTCAAACTTATATG+GGG | + | chr5_1:52095949-52095968 | Msa0736140:CDS | 30.0% | |
| AAGGTTGCATAGTTTAGTTA+TGG | + | chr5_1:52096089-52096108 | Msa0736140:CDS | 30.0% | |
| ATCATTTAGAAACTGGATCA+TGG | - | chr5_1:52096214-52096233 | None:intergenic | 30.0% | |
| !!! | TTTTGGGATCATTTAGAAAC+TGG | - | chr5_1:52096221-52096240 | None:intergenic | 30.0% |
| AATTGAAAGTTTCATGACAC+TGG | + | chr5_1:52096431-52096450 | Msa0736140:CDS | 30.0% | |
| GTTTGTAAAGAAGAGATTTC+GGG | + | chr5_1:52096458-52096477 | Msa0736140:CDS | 30.0% | |
| GCAAGTGAAATGAAAGATTT+CGG | - | chr5_1:52096534-52096553 | None:intergenic | 30.0% | |
| AAAGCAAACCTAGTATTCTA+AGG | - | chr5_1:52096707-52096726 | None:intergenic | 30.0% | |
| TTCAGGAAGAATAATTGAAC+TGG | - | chr5_1:52096730-52096749 | None:intergenic | 30.0% | |
| ATTATTCTTCCTGAACTCAA+TGG | + | chr5_1:52096735-52096754 | Msa0736140:CDS | 30.0% | |
| TTATTCTTCCTGAACTCAAT+GGG | + | chr5_1:52096736-52096755 | Msa0736140:CDS | 30.0% | |
| TGTGTACAGTTTAATAGAAC+TGG | - | chr5_1:52096820-52096839 | None:intergenic | 30.0% | |
| TCTATTAAACTGTACACAGA+AGG | + | chr5_1:52096822-52096841 | Msa0736140:CDS | 30.0% | |
| CTTCAACATTGCATTCTTAT+AGG | + | chr5_1:52096930-52096949 | Msa0736140:CDS | 30.0% | |
| !!! | CTTGATCCTTACCTTTTTTT+AGG | + | chr5_1:52096998-52097017 | Msa0736140:intron | 30.0% |
| ATTGCTGATAATTGTGGATT+TGG | + | chr5_1:52097091-52097110 | Msa0736140:CDS | 30.0% | |
| ! | AAGAAGTATGTTTGAGAGAT+TGG | + | chr5_1:52097114-52097133 | Msa0736140:CDS | 30.0% |
| TTTGAGAGATTGGTATTGTT+AGG | + | chr5_1:52097124-52097143 | Msa0736140:CDS | 30.0% | |
| TGAAAAAATTTCTGATGCTC+CGG | + | chr5_1:52097225-52097244 | Msa0736140:CDS | 30.0% | |
| GATAATTCAAAGCCTTAGAA+AGG | + | chr5_1:52097396-52097415 | Msa0736140:CDS | 30.0% | |
| AAGAAAAACAACCCTTTCTA+AGG | - | chr5_1:52097411-52097430 | None:intergenic | 30.0% | |
| !!! | CAATGCAAAGTTGCTTTTTT+TGG | - | chr5_1:52097524-52097543 | None:intergenic | 30.0% |
| ACAAAGAAGAAAGTTAGCAT+TGG | + | chr5_1:52097717-52097736 | Msa0736140:CDS | 30.0% | |
| ! | TCAAAAACTTGAGCATTGTA+TGG | - | chr5_1:52097753-52097772 | None:intergenic | 30.0% |
| !!! | TGCTCAAGTTTTTGAAATTC+AGG | + | chr5_1:52097758-52097777 | Msa0736140:CDS | 30.0% |
| AAAATCTGTATCAGAAACTG+AGG | - | chr5_1:52097802-52097821 | None:intergenic | 30.0% | |
| TAGCTCTTTGTCTATTTGAA+AGG | - | chr5_1:52097923-52097942 | None:intergenic | 30.0% | |
| AGATACTGTCTTTGGATATT+AGG | + | chr5_1:52098037-52098056 | Msa0736140:intron | 30.0% | |
| TAGCCAATAGTGATTCTATT+TGG | + | chr5_1:52098074-52098093 | Msa0736140:CDS | 30.0% | |
| GAGAAATCATCAGAAATTGA+TGG | + | chr5_1:52098244-52098263 | Msa0736140:CDS | 30.0% | |
| ! | TCCATCTAAGTATTTTGCTT+TGG | + | chr5_1:52098358-52098377 | Msa0736140:intron | 30.0% |
| ! | CCATCTAAGTATTTTGCTTT+GGG | + | chr5_1:52098359-52098378 | Msa0736140:intron | 30.0% |
| ! | TCAAACATAATTCCTCCTTT+TGG | + | chr5_1:52098627-52098646 | Msa0736140:three_prime_UTR | 30.0% |
| TCAAAATCTCTACAGGAACA+AGG | + | chr5_1:52094424-52094443 | Msa0736140:CDS | 35.0% | |
| ! | AGTTTAAAGCACTTGAACCA+TGG | + | chr5_1:52094671-52094690 | Msa0736140:intron | 35.0% |
| TATGAAAACTGTTCTATCGC+AGG | + | chr5_1:52094920-52094939 | Msa0736140:intron | 35.0% | |
| GTTGGAGAATTAAAAGTCTC+GGG | - | chr5_1:52094957-52094976 | None:intergenic | 35.0% | |
| GTTTGAATATAGGTCAGAGT+GGG | - | chr5_1:52095021-52095040 | None:intergenic | 35.0% | |
| AGTTTGAATATAGGTCAGAG+TGG | - | chr5_1:52095022-52095041 | None:intergenic | 35.0% | |
| TTCAAGTCATCTACTCTCTT+GGG | - | chr5_1:52095218-52095237 | None:intergenic | 35.0% | |
| ATTCAAGTCATCTACTCTCT+TGG | - | chr5_1:52095219-52095238 | None:intergenic | 35.0% | |
| ! | GCTCCAAAAGATGATTTTTC+TGG | + | chr5_1:52095275-52095294 | Msa0736140:CDS | 35.0% |
| AGGTAAACTGCATACATCTT+TGG | - | chr5_1:52095362-52095381 | None:intergenic | 35.0% | |
| GTGATTCTTACATTGAGACA+AGG | - | chr5_1:52095476-52095495 | None:intergenic | 35.0% | |
| ! | TTGAGCTTGTTTACTTGCAT+AGG | - | chr5_1:52095577-52095596 | None:intergenic | 35.0% |
| TGCAAAACTGCAGTATTAGT+CGG | - | chr5_1:52096060-52096079 | None:intergenic | 35.0% | |
| ! | TAATACTGCAGTTTTGCAAG+TGG | + | chr5_1:52096062-52096081 | Msa0736140:CDS | 35.0% |
| ATGAAAGTAGACAGTTATCC+AGG | + | chr5_1:52096174-52096193 | Msa0736140:CDS | 35.0% | |
| CAGTTATCCAGGTTTAGTTA+TGG | + | chr5_1:52096185-52096204 | Msa0736140:CDS | 35.0% | |
| ATGGATTCCATAACTAAACC+TGG | - | chr5_1:52096195-52096214 | None:intergenic | 35.0% | |
| TGATGATACTATGACACTTG+AGG | + | chr5_1:52096347-52096366 | Msa0736140:CDS | 35.0% | |
| ! | ATCAAGAGTTTTCTTGAACC+TGG | - | chr5_1:52096622-52096641 | None:intergenic | 35.0% |
| CCATCTATTTCAGAGTTAGA+TGG | - | chr5_1:52096681-52096700 | None:intergenic | 35.0% | |
| !! | CCATCTAACTCTGAAATAGA+TGG | + | chr5_1:52096678-52096697 | Msa0736140:CDS | 35.0% |
| GATGGTTTCCTTAGAATACT+AGG | + | chr5_1:52096696-52096715 | Msa0736140:CDS | 35.0% | |
| TTTGCATGGAAACAAGCTTA+TGG | - | chr5_1:52097194-52097213 | None:intergenic | 35.0% | |
| TCATCATAGAACTCTTTGCA+TGG | - | chr5_1:52097208-52097227 | None:intergenic | 35.0% | |
| AAGCATACATTTCTCCATCA+AGG | - | chr5_1:52097282-52097301 | None:intergenic | 35.0% | |
| GCTAAGGGTAAAGAGAAATT+TGG | + | chr5_1:52097322-52097341 | Msa0736140:CDS | 35.0% | |
| ACTGTAAGATCTAATGGAAG+TGG | + | chr5_1:52097885-52097904 | Msa0736140:CDS | 35.0% | |
| AGCTAATGTTGCAATGACAA+GGG | + | chr5_1:52097938-52097957 | Msa0736140:CDS | 35.0% | |
| ATGTTGTGAAGATTCCAAGT+TGG | + | chr5_1:52097986-52098005 | Msa0736140:intron | 35.0% | |
| ! | AAGTCAGTTTTCAACCAACT+TGG | - | chr5_1:52098003-52098022 | None:intergenic | 35.0% |
| ! | AAATTGATGGTTCTTCCTCT+AGG | + | chr5_1:52098257-52098276 | Msa0736140:CDS | 35.0% |
| CCCAAAGCAAAATACTTAGA+TGG | - | chr5_1:52098362-52098381 | None:intergenic | 35.0% | |
| !!! | TGCAACATTTTTTTTGTGGC+AGG | + | chr5_1:52098418-52098437 | Msa0736140:intron | 35.0% |
| ATCACAAAAACACCAAAAGG+AGG | - | chr5_1:52098642-52098661 | None:intergenic | 35.0% | |
| TGGATCACAAAAACACCAAA+AGG | - | chr5_1:52098645-52098664 | None:intergenic | 35.0% | |
| ! | GAATGCAGCTCTTGGATTTT+TGG | + | chr5_1:52094364-52094383 | Msa0736140:CDS | 40.0% |
| AACCGAATAGGACATCAATC+CGG | - | chr5_1:52094710-52094729 | None:intergenic | 40.0% | |
| GGAAAATATGAACCAGAAGC+TGG | + | chr5_1:52095164-52095183 | Msa0736140:CDS | 40.0% | |
| TGGAGATCTCATTGCTTTCA+CGG | + | chr5_1:52095184-52095203 | Msa0736140:CDS | 40.0% | |
| TCCTCAAGTCAAATTCAGTG+AGG | - | chr5_1:52095328-52095347 | None:intergenic | 40.0% | |
| AGCTGCAAAGTTTGCATGTT+TGG | + | chr5_1:52095817-52095836 | Msa0736140:CDS | 40.0% | |
| TCACTTGAGCATGATACGTA+TGG | + | chr5_1:52096114-52096133 | Msa0736140:CDS | 40.0% | |
| GAGCATGATACGTATGGTTT+AGG | + | chr5_1:52096120-52096139 | Msa0736140:CDS | 40.0% | |
| TTAGGTGACATTGTGCTCTT+TGG | + | chr5_1:52096138-52096157 | Msa0736140:CDS | 40.0% | |
| CAAATTCCTCAAGGGACTTA+TGG | - | chr5_1:52096266-52096285 | None:intergenic | 40.0% | |
| AGGATTATGTGCAGAAGTTG+TGG | + | chr5_1:52096367-52096386 | Msa0736140:CDS | 40.0% | |
| GGATTATGTGCAGAAGTTGT+GGG | + | chr5_1:52096368-52096387 | Msa0736140:CDS | 40.0% | |
| GATTATGTGCAGAAGTTGTG+GGG | + | chr5_1:52096369-52096388 | Msa0736140:CDS | 40.0% | |
| CATTGCCGAGGAATATGAAT+CGG | + | chr5_1:52096395-52096414 | Msa0736140:CDS | 40.0% | |
| CTCATCCGATTCATATTCCT+CGG | - | chr5_1:52096403-52096422 | None:intergenic | 40.0% | |
| TTTCGGCAAGTGTGTGTATA+AGG | - | chr5_1:52096517-52096536 | None:intergenic | 40.0% | |
| CTTGAATTGCTCAGGTCTAT+TGG | + | chr5_1:52096579-52096598 | Msa0736140:CDS | 40.0% | |
| GAATATCCTTGTATCAAGCC+AGG | + | chr5_1:52096601-52096620 | Msa0736140:CDS | 40.0% | |
| TTAGATGGTTCAAAGCAAGC+AGG | - | chr5_1:52096666-52096685 | None:intergenic | 40.0% | |
| AAATTAAACGTGCGTTCGAC+AGG | - | chr5_1:52096785-52096804 | None:intergenic | 40.0% | |
| AGAATGCAATGTTGAAGACC+CGG | - | chr5_1:52096927-52096946 | None:intergenic | 40.0% | |
| !! | ACCTTGCTTTTGACTAATGC+CGG | - | chr5_1:52096972-52096991 | None:intergenic | 40.0% |
| CATGGAAACAAGCTTATGGA+TGG | - | chr5_1:52097190-52097209 | None:intergenic | 40.0% | |
| !! | ATGTTAACTTGTGCCCTCTA+GGG | - | chr5_1:52097630-52097649 | None:intergenic | 40.0% |
| !! | AATGTTAACTTGTGCCCTCT+AGG | - | chr5_1:52097631-52097650 | None:intergenic | 40.0% |
| !!! | TTGTTTTGGCAGAGTTTACG+AGG | + | chr5_1:52097694-52097713 | Msa0736140:intron | 40.0% |
| GTTAGTGTTCGTTCTGTTGA+CGG | + | chr5_1:52097825-52097844 | Msa0736140:CDS | 40.0% | |
| TCTAATGGAAGTGGCAAAGT+AGG | + | chr5_1:52097894-52097913 | Msa0736140:CDS | 40.0% | |
| GAGCTAATGTTGCAATGACA+AGG | + | chr5_1:52097937-52097956 | Msa0736140:CDS | 40.0% | |
| TTGTGTGCAGATACTGTCTT+TGG | + | chr5_1:52098029-52098048 | Msa0736140:intron | 40.0% | |
| AGCCAATTTCTTGTCCTCAT+CGG | - | chr5_1:52098146-52098165 | None:intergenic | 40.0% | |
| !!! | ATTTTTTTTGTGGCAGGCCA+AGG | + | chr5_1:52098424-52098443 | Msa0736140:intron | 40.0% |
| TGATTCACCAGCTTCATACT+TGG | - | chr5_1:52098462-52098481 | None:intergenic | 40.0% | |
| AAGCTGGTGAATCAATTGTG+CGG | + | chr5_1:52098468-52098487 | Msa0736140:CDS | 40.0% | |
| GGGAACATTTGACACAACAA+TGG | - | chr5_1:52098782-52098801 | None:intergenic | 40.0% | |
| ATCAATCCGGCAAGAGATAC+GGG | - | chr5_1:52094697-52094716 | None:intergenic | 45.0% | |
| CATCAATCCGGCAAGAGATA+CGG | - | chr5_1:52094698-52094717 | None:intergenic | 45.0% | |
| TGCCGGATTGATGTCCTATT+CGG | + | chr5_1:52094705-52094724 | Msa0736140:intron | 45.0% | |
| !! | GCCTCACTGAATTTGACTTG+AGG | + | chr5_1:52095324-52095343 | Msa0736140:CDS | 45.0% |
| AAACTTATATGGGGACCACC+AGG | + | chr5_1:52095958-52095977 | Msa0736140:CDS | 45.0% | |
| AACTTATATGGGGACCACCA+GGG | + | chr5_1:52095959-52095978 | Msa0736140:CDS | 45.0% | |
| ATTAGTCGGAGCACATGTCA+AGG | - | chr5_1:52096046-52096065 | None:intergenic | 45.0% | |
| ! | CAGTTTTGCAAGTGGCAACA+AGG | + | chr5_1:52096070-52096089 | Msa0736140:CDS | 45.0% |
| GACATTGTGCTCTTTGGCAA+TGG | + | chr5_1:52096144-52096163 | Msa0736140:CDS | 45.0% | |
| TTCGAGCTCTTGAATTGCTC+AGG | + | chr5_1:52096571-52096590 | Msa0736140:CDS | 45.0% | |
| ! | CTTGAACCTGGCTTGATACA+AGG | - | chr5_1:52096610-52096629 | None:intergenic | 45.0% |
| AGGCGATGAGAAACAACTTC+CGG | + | chr5_1:52096950-52096969 | Msa0736140:CDS | 45.0% | |
| TCCGGCATTAGTCAAAAGCA+AGG | + | chr5_1:52096968-52096987 | Msa0736140:CDS | 45.0% | |
| TAGCTTTCTTCCATGACAGC+CGG | - | chr5_1:52097247-52097266 | None:intergenic | 45.0% | |
| GGTAAAGAGAAATTTGGCCG+AGG | + | chr5_1:52097328-52097347 | Msa0736140:CDS | 45.0% | |
| AAAGAGAAATTTGGCCGAGG+AGG | + | chr5_1:52097331-52097350 | Msa0736140:CDS | 45.0% | |
| !! | TCATGTTAACTTGTGCCCTG+AGG | + | chr5_1:52097482-52097501 | Msa0736140:intron | 45.0% |
| !! | CATGTTAACTTGTGCCCTGA+GGG | + | chr5_1:52097483-52097502 | Msa0736140:intron | 45.0% |
| TTCCTTAACCTATGCCCTCA+GGG | - | chr5_1:52097500-52097519 | None:intergenic | 45.0% | |
| TCCTTAACATGTGCCCTAGA+GGG | + | chr5_1:52097614-52097633 | Msa0736140:intron | 45.0% | |
| ! | CGTTCTGTTGACGGTTTTCA+AGG | + | chr5_1:52097834-52097853 | Msa0736140:CDS | 45.0% |
| !! | TCTGTTGACGGTTTTCAAGG+TGG | + | chr5_1:52097837-52097856 | Msa0736140:CDS | 45.0% |
| ATGTTGCAATGACAAGGGCA+AGG | + | chr5_1:52097943-52097962 | Msa0736140:CDS | 45.0% | |
| TTGTTACCATGATGCCGATG+AGG | + | chr5_1:52098129-52098148 | Msa0736140:CDS | 45.0% | |
| TGCCGATGAGGACAAGAAAT+TGG | + | chr5_1:52098141-52098160 | Msa0736140:CDS | 45.0% | |
| AGCTTCATACTTGGTCCTCT+AGG | - | chr5_1:52098453-52098472 | None:intergenic | 45.0% | |
| TAGAGGACCAAGTATGAAGC+TGG | + | chr5_1:52098452-52098471 | Msa0736140:CDS | 45.0% | |
| GATGACGAGAATGCAGCTCT+TGG | + | chr5_1:52094356-52094375 | Msa0736140:CDS | 50.0% | |
| ! | CTCTAGCAGTGGAGGCATAA+AGG | - | chr5_1:52094994-52095013 | None:intergenic | 50.0% |
| CTTTATGCCTCCACTGCTAG+AGG | + | chr5_1:52094992-52095011 | Msa0736140:CDS | 50.0% | |
| GCAATGAGATCTCCAGCTTC+TGG | - | chr5_1:52095179-52095198 | None:intergenic | 50.0% | |
| ! | AGCATTGAACTCGGAGTCAG+AGG | + | chr5_1:52095415-52095434 | Msa0736140:CDS | 50.0% |
| GCATTGAACTCGGAGTCAGA+GGG | + | chr5_1:52095416-52095435 | Msa0736140:CDS | 50.0% | |
| !! | TTTGTTTTCCCAGTCCCTGG+TGG | - | chr5_1:52095976-52095995 | None:intergenic | 50.0% |
| !!! | GTCTTTGTTTTCCCAGTCCC+TGG | - | chr5_1:52095979-52095998 | None:intergenic | 50.0% |
| CTTCCTGAACTCAATGGGAG+AGG | + | chr5_1:52096741-52096760 | Msa0736140:CDS | 50.0% | |
| TGACCTCTCCCATTGAGTTC+AGG | - | chr5_1:52096747-52096766 | None:intergenic | 50.0% | |
| CGGTAGCTGCAATGGAATAG+CGG | - | chr5_1:52096907-52096926 | None:intergenic | 50.0% | |
| CGCTATTCCATTGCAGCTAC+CGG | + | chr5_1:52096905-52096924 | Msa0736140:CDS | 50.0% | |
| GCTATTCCATTGCAGCTACC+GGG | + | chr5_1:52096906-52096925 | Msa0736140:CDS | 50.0% | |
| TCTTCAGACTGTGTCCTCCT+CGG | - | chr5_1:52097348-52097367 | None:intergenic | 50.0% | |
| GTTCCTTAACCTATGCCCTC+AGG | - | chr5_1:52097501-52097520 | None:intergenic | 50.0% | |
| CTCCTTAACATGTGCCCTAG+AGG | + | chr5_1:52097613-52097632 | Msa0736140:intron | 50.0% | |
| TCTTGTCCTCATCGGCATCA+TGG | - | chr5_1:52098138-52098157 | None:intergenic | 50.0% | |
| CTTGGTCCTCTAGGTTTCCT+TGG | - | chr5_1:52098444-52098463 | None:intergenic | 50.0% | |
| TGGGTTTCCTCTAGCAGTGG+AGG | - | chr5_1:52095002-52095021 | None:intergenic | 55.0% | |
| ! | GAGTGGGTTTCCTCTAGCAG+TGG | - | chr5_1:52095005-52095024 | None:intergenic | 55.0% |
| GATGGGCCATAAGTCCCTTG+AGG | + | chr5_1:52096257-52096276 | Msa0736140:CDS | 55.0% | |
| TGAAGACCCGGTAGCTGCAA+TGG | - | chr5_1:52096915-52096934 | None:intergenic | 55.0% | |
| TTCTGATGCTCCGGCTGTCA+TGG | + | chr5_1:52097234-52097253 | Msa0736140:CDS | 55.0% | |
| ! | AACTTGTGCCCTGAGGGCAT+AGG | + | chr5_1:52097489-52097508 | Msa0736140:intron | 55.0% |
| ! | TGCCCTGAGGGCATAGGTTA+AGG | + | chr5_1:52097495-52097514 | Msa0736140:intron | 55.0% |
| !! | GCCCTCTAGGGCACATGTTA+AGG | - | chr5_1:52097618-52097637 | None:intergenic | 55.0% |
| TGTGCGGTGTTCGTTCGCTA+AGG | + | chr5_1:52098484-52098503 | Msa0736140:CDS | 55.0% | |
| GTGCGGTGTTCGTTCGCTAA+GGG | + | chr5_1:52098485-52098504 | Msa0736140:CDS | 55.0% | |
| CCATGGCCCGTATCTCTTGC+CGG | + | chr5_1:52094688-52094707 | Msa0736140:intron | 60.0% | |
| ATATGGGGACCACCAGGGAC+TGG | + | chr5_1:52095964-52095983 | Msa0736140:CDS | 60.0% | |
| TATGGGGACCACCAGGGACT+GGG | + | chr5_1:52095965-52095984 | Msa0736140:CDS | 60.0% | |
| GTTGTGGGGAGACATTGCCG+AGG | + | chr5_1:52096383-52096402 | Msa0736140:CDS | 60.0% | |
| GGCAGGCCAAGGAAACCTAG+AGG | + | chr5_1:52098435-52098454 | Msa0736140:intron | 60.0% | |
| CCGGCAAGAGATACGGGCCA+TGG | - | chr5_1:52094691-52094710 | None:intergenic | 65.0% | |
| GGAGTCAGAGGGCGAACACC+TGG | + | chr5_1:52095427-52095446 | Msa0736140:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 52094317 | 52098803 | 52094317 | ID=Msa0736140;Name=Msa0736140 |
| chr5_1 | mRNA | 52094317 | 52098803 | 52094317 | ID=Msa0736140-mRNA-1;Parent=Msa0736140;Name=Msa0736140-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|0.66|0.57|1|1|1|7|273|923 |
| chr5_1 | exon | 52094317 | 52094445 | 52094317 | ID=Msa0736140-mRNA-1:exon:14711;Parent=Msa0736140-mRNA-1 |
| chr5_1 | exon | 52094942 | 52095484 | 52094942 | ID=Msa0736140-mRNA-1:exon:14712;Parent=Msa0736140-mRNA-1 |
| chr5_1 | exon | 52095808 | 52096989 | 52095808 | ID=Msa0736140-mRNA-1:exon:14713;Parent=Msa0736140-mRNA-1 |
| chr5_1 | exon | 52097091 | 52097418 | 52097091 | ID=Msa0736140-mRNA-1:exon:14714;Parent=Msa0736140-mRNA-1 |
| chr5_1 | exon | 52097706 | 52097964 | 52097706 | ID=Msa0736140-mRNA-1:exon:14715;Parent=Msa0736140-mRNA-1 |
| chr5_1 | exon | 52098039 | 52098278 | 52098039 | ID=Msa0736140-mRNA-1:exon:14716;Parent=Msa0736140-mRNA-1 |
| chr5_1 | exon | 52098440 | 52098803 | 52098440 | ID=Msa0736140-mRNA-1:exon:14717;Parent=Msa0736140-mRNA-1 |
| chr5_1 | CDS | 52094317 | 52094445 | 52094317 | ID=Msa0736140-mRNA-1:cds;Parent=Msa0736140-mRNA-1 |
| chr5_1 | CDS | 52094942 | 52095484 | 52094942 | ID=Msa0736140-mRNA-1:cds;Parent=Msa0736140-mRNA-1 |
| chr5_1 | CDS | 52095808 | 52096989 | 52095808 | ID=Msa0736140-mRNA-1:cds;Parent=Msa0736140-mRNA-1 |
| chr5_1 | CDS | 52097091 | 52097418 | 52097091 | ID=Msa0736140-mRNA-1:cds;Parent=Msa0736140-mRNA-1 |
| chr5_1 | CDS | 52097706 | 52097964 | 52097706 | ID=Msa0736140-mRNA-1:cds;Parent=Msa0736140-mRNA-1 |
| chr5_1 | CDS | 52098039 | 52098278 | 52098039 | ID=Msa0736140-mRNA-1:cds;Parent=Msa0736140-mRNA-1 |
| chr5_1 | CDS | 52098440 | 52098530 | 52098440 | ID=Msa0736140-mRNA-1:cds;Parent=Msa0736140-mRNA-1 |
| chr5_1 | three_prime_UTR | 52098531 | 52098803 | 52098531 | ID=Msa0736140-mRNA-1:three_prime_utr;Parent=Msa0736140-mRNA-1 |
| Gene Sequence |
| Protein sequence |
