Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0815320 | XP_039690667.1 | 79.102 | 713 | 113 | 3 | 2 | 713 | 139 | 816 | 0.0 | 1142 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0815320 | sp|B6SFA4|MAA3_ARATH | 32.258 | 279 | 150 | 8 | 436 | 712 | 454 | 695 | 4.80e-28 | 124 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0815320 | A0A396HU03 | 79.102 | 713 | 113 | 3 | 2 | 713 | 139 | 816 | 0.0 | 1142 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0022640 | Msa0815320 | 0.806203 | 9.221326e-50 | -8.615850e-47 |
| Msa0023610 | Msa0815320 | 0.813142 | 2.973514e-51 | -8.615850e-47 |
| Msa0073530 | Msa0815320 | 0.811303 | 7.491381e-51 | -8.615850e-47 |
| Msa0096250 | Msa0815320 | 0.800882 | 1.170001e-48 | -8.615850e-47 |
| Msa0107390 | Msa0815320 | 0.808386 | 3.177670e-50 | -8.615850e-47 |
| Msa0627410 | Msa0815320 | 0.811262 | 7.642927e-51 | -8.615850e-47 |
| Msa0629850 | Msa0815320 | 0.813931 | 1.993549e-51 | -8.615850e-47 |
| Msa0639460 | Msa0815320 | 0.823067 | 1.691264e-53 | -8.615850e-47 |
| Msa0641900 | Msa0815320 | 0.808120 | 3.619497e-50 | -8.615850e-47 |
| Msa0648540 | Msa0815320 | 0.803044 | 4.205482e-49 | -8.615850e-47 |
| Msa0657970 | Msa0815320 | 0.803147 | 4.004037e-49 | -8.615850e-47 |
| Msa0661870 | Msa0815320 | 0.810551 | 1.089469e-50 | -8.615850e-47 |
| Msa0675510 | Msa0815320 | 0.823785 | 1.148609e-53 | -8.615850e-47 |
| Msa0682360 | Msa0815320 | 0.819780 | 9.705443e-53 | -8.615850e-47 |
| Msa0682530 | Msa0815320 | 0.831244 | 1.862839e-55 | -8.615850e-47 |
| Msa0717670 | Msa0815320 | 0.827149 | 1.835123e-54 | -8.615850e-47 |
| Msa0736140 | Msa0815320 | 0.856194 | 3.794734e-62 | -8.615850e-47 |
| Msa0754180 | Msa0815320 | 0.812403 | 4.315862e-51 | -8.615850e-47 |
| Msa0778120 | Msa0815320 | 0.838071 | 3.576010e-57 | -8.615850e-47 |
| Msa0784520 | Msa0815320 | 0.803417 | 3.520702e-49 | -8.615850e-47 |
| Msa0784580 | Msa0815320 | 0.814055 | 1.872186e-51 | -8.615850e-47 |
| Msa0815320 | Msa0818010 | 0.856555 | 2.972052e-62 | -8.615850e-47 |
| Msa0815320 | Msa0818030 | 0.815887 | 7.343569e-52 | -8.615850e-47 |
| Msa0815320 | Msa0853550 | 0.823119 | 1.644576e-53 | -8.615850e-47 |
| Msa0815320 | Msa0855580 | 0.815929 | 7.185992e-52 | -8.615850e-47 |
| Msa0815320 | Msa0858360 | 0.852946 | 3.305635e-61 | -8.615850e-47 |
| Msa0815320 | Msa0865390 | 0.809286 | 2.039483e-50 | -8.615850e-47 |
| Msa0815320 | Msa0870620 | 0.812010 | 5.256955e-51 | -8.615850e-47 |
| Msa0815320 | Msa0872420 | 0.802608 | 5.175331e-49 | -8.615850e-47 |
| Msa0815320 | Msa0884920 | 0.847132 | 1.402942e-59 | -8.615850e-47 |
| Msa0815320 | Msa0897950 | 0.819643 | 1.042669e-52 | -8.615850e-47 |
| Msa0815320 | Msa0898390 | 0.805189 | 1.504936e-49 | -8.615850e-47 |
| Msa0815320 | Msa0902020 | 0.822471 | 2.326761e-53 | -8.615850e-47 |
| Msa0815320 | Msa0905720 | 0.802884 | 4.538738e-49 | -8.615850e-47 |
| Msa0815320 | Msa0912370 | 0.835534 | 1.586960e-56 | -8.615850e-47 |
| Msa0815320 | Msa0912420 | 0.807377 | 5.207417e-50 | -8.615850e-47 |
| Msa0815320 | Msa0912500 | 0.853824 | 1.850545e-61 | -8.615850e-47 |
| Msa0815320 | Msa0924370 | 0.820167 | 7.912871e-53 | -8.615850e-47 |
| Msa0815320 | Msa0940090 | 0.810941 | 8.973935e-51 | -8.615850e-47 |
| Msa0815320 | Msa0957640 | 0.802771 | 4.788349e-49 | -8.615850e-47 |
| Msa0815320 | Msa0963310 | 0.840751 | 7.199084e-58 | -8.615850e-47 |
| Msa0815320 | Msa0965750 | 0.808748 | 2.659035e-50 | -8.615850e-47 |
| Msa0815320 | Msa0974910 | 0.804576 | 2.021904e-49 | -8.615850e-47 |
| Msa0815320 | Msa1006250 | 0.871876 | 4.891031e-67 | -8.615850e-47 |
| Msa0815320 | Msa1020720 | 0.820764 | 5.773555e-53 | -8.615850e-47 |
| Msa0815320 | Msa1021740 | 0.808905 | 2.461598e-50 | -8.615850e-47 |
| Msa0815320 | Msa1025790 | 0.807977 | 3.882196e-50 | -8.615850e-47 |
| Msa0815320 | Msa1027240 | 0.835596 | 1.530344e-56 | -8.615850e-47 |
| Msa0815320 | Msa1034680 | 0.807705 | 4.436560e-50 | -8.615850e-47 |
| Msa0815320 | Msa1060520 | 0.802294 | 6.007712e-49 | -8.615850e-47 |
| Msa0815320 | Msa1082500 | 0.806843 | 6.754730e-50 | -8.615850e-47 |
| Msa0815320 | Msa1100180 | 0.818835 | 1.593084e-52 | -8.615850e-47 |
| Msa0815320 | Msa1131820 | 0.859824 | 3.165754e-63 | -8.615850e-47 |
| Msa0815320 | Msa1178650 | 0.812756 | 3.611405e-51 | -8.615850e-47 |
| Msa0815320 | Msa1178660 | 0.819057 | 1.418133e-52 | -8.615850e-47 |
| Msa0815320 | Msa1187060 | 0.821915 | 3.131742e-53 | -8.615850e-47 |
| Msa0815320 | Msa1195920 | 0.800574 | 1.351842e-48 | -8.615850e-47 |
| Msa0815320 | Msa1198090 | 0.818949 | 1.500998e-52 | -8.615850e-47 |
| Msa0815320 | Msa1232060 | 0.805936 | 1.049085e-49 | -8.615850e-47 |
| Msa0815320 | Msa1275770 | 0.811040 | 8.539303e-51 | -8.615850e-47 |
| Msa0815320 | Msa1287560 | 0.813999 | 1.926414e-51 | -8.615850e-47 |
| Msa0815320 | Msa1287700 | 0.800866 | 1.178990e-48 | -8.615850e-47 |
| Msa0815320 | Msa1288000 | 0.851019 | 1.165784e-60 | -8.615850e-47 |
| Msa0815320 | Msa1289280 | 0.814885 | 1.226938e-51 | -8.615850e-47 |
| Msa0815320 | Msa1292010 | 0.805856 | 1.090714e-49 | -8.615850e-47 |
| Msa0815320 | Msa1308620 | 0.801466 | 8.887727e-49 | -8.615850e-47 |
| Msa0815320 | Msa1308640 | 0.800453 | 1.430991e-48 | -8.615850e-47 |
| Msa0815320 | Msa1324780 | 0.831447 | 1.661190e-55 | -8.615850e-47 |
| Msa0815320 | Msa1339440 | 0.816410 | 5.609855e-52 | -8.615850e-47 |
| Msa0815320 | Msa1359820 | 0.832808 | 7.652431e-56 | -8.615850e-47 |
| Msa0815320 | Msa1409770 | 0.830210 | 3.339420e-55 | -8.615850e-47 |
| Msa0815320 | Msa1419010 | 0.801662 | 8.101643e-49 | -8.615850e-47 |
| Msa0815320 | Msa1423990 | 0.847500 | 1.111616e-59 | -8.615850e-47 |
| Msa0815320 | Msa1424690 | 0.817764 | 2.783974e-52 | -8.615850e-47 |
| Msa0815320 | Msa1444370 | 0.827885 | 1.222104e-54 | -8.615850e-47 |
| Msa0815320 | Msa1457660 | 0.824908 | 6.254493e-54 | -8.615850e-47 |
| Msa0138290 | Msa0815320 | 0.811710 | 6.110164e-51 | -8.615850e-47 |
| Msa0145250 | Msa0815320 | 0.809931 | 1.482295e-50 | -8.615850e-47 |
| Msa0153200 | Msa0815320 | 0.807943 | 3.949052e-50 | -8.615850e-47 |
| Msa0161680 | Msa0815320 | 0.803352 | 3.632209e-49 | -8.615850e-47 |
| Msa0211680 | Msa0815320 | 0.815207 | 1.040609e-51 | -8.615850e-47 |
| Msa0235190 | Msa0815320 | 0.811224 | 7.791821e-51 | -8.615850e-47 |
| Msa0452410 | Msa0815320 | 0.814513 | 1.482729e-51 | -8.615850e-47 |
| Msa0456200 | Msa0815320 | 0.811095 | 8.311314e-51 | -8.615850e-47 |
| Msa0458700 | Msa0815320 | 0.824789 | 6.672866e-54 | -8.615850e-47 |
| Msa0273570 | Msa0815320 | 0.850071 | 2.152310e-60 | -8.615850e-47 |
| Msa0288460 | Msa0815320 | 0.800187 | 1.620776e-48 | -8.615850e-47 |
| Msa0313920 | Msa0815320 | 0.807862 | 4.107473e-50 | -8.615850e-47 |
| Msa0323620 | Msa0815320 | 0.800229 | 1.589868e-48 | -8.615850e-47 |
| Msa0326200 | Msa0815320 | 0.811073 | 8.399207e-51 | -8.615850e-47 |
| Msa0352000 | Msa0815320 | 0.846627 | 1.928554e-59 | -8.615850e-47 |
| Msa0352010 | Msa0815320 | 0.855261 | 7.103933e-62 | -8.615850e-47 |
| Msa0353190 | Msa0815320 | 0.802203 | 6.271799e-49 | -8.615850e-47 |
| Msa0353690 | Msa0815320 | 0.822880 | 1.869678e-53 | -8.615850e-47 |
| Msa0484780 | Msa0815320 | 0.808552 | 2.928396e-50 | -8.615850e-47 |
| Msa0506000 | Msa0815320 | 0.813575 | 2.388064e-51 | -8.615850e-47 |
| Msa0533290 | Msa0815320 | 0.830181 | 3.392633e-55 | -8.615850e-47 |
| Msa0533430 | Msa0815320 | 0.859478 | 4.023481e-63 | -8.615850e-47 |
| Msa0554130 | Msa0815320 | 0.810038 | 1.405619e-50 | -8.615850e-47 |
| Msa0580610 | Msa0815320 | 0.825157 | 5.463730e-54 | -8.615850e-47 |
| Msa0584130 | Msa0815320 | 0.838413 | 2.919101e-57 | -8.615850e-47 |
| Msa0599070 | Msa0815320 | 0.816472 | 5.434111e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0815320 | MtrunA17_Chr5g0433471 | 79.102 | 713 | 113 | 3 | 2 | 713 | 139 | 816 | 0.0 | 1142 |
| Msa0815320 | MtrunA17_Chr5g0433511 | 64.409 | 753 | 175 | 12 | 2 | 713 | 135 | 835 | 0.0 | 905 |
| Msa0815320 | MtrunA17_Chr3g0109541 | 57.202 | 729 | 252 | 11 | 2 | 713 | 132 | 817 | 0.0 | 770 |
| Msa0815320 | MtrunA17_Chr5g0433371 | 55.801 | 724 | 269 | 9 | 2 | 713 | 133 | 817 | 0.0 | 758 |
| Msa0815320 | MtrunA17_Chr5g0433361 | 55.154 | 747 | 196 | 13 | 2 | 713 | 155 | 797 | 0.0 | 731 |
| Msa0815320 | MtrunA17_Chr5g0433321 | 51.452 | 723 | 280 | 10 | 2 | 713 | 131 | 793 | 0.0 | 704 |
| Msa0815320 | MtrunA17_Chr5g0433421 | 63.812 | 467 | 118 | 6 | 250 | 713 | 483 | 901 | 0.0 | 560 |
| Msa0815320 | MtrunA17_Chr5g0433421 | 62.398 | 367 | 121 | 9 | 2 | 360 | 131 | 488 | 1.62e-140 | 437 |
| Msa0815320 | MtrunA17_Chr3g0109551 | 43.176 | 762 | 346 | 15 | 2 | 713 | 128 | 852 | 9.36e-180 | 542 |
| Msa0815320 | MtrunA17_Chr5g0433351 | 56.378 | 392 | 107 | 6 | 2 | 388 | 138 | 470 | 8.08e-135 | 405 |
| Msa0815320 | MtrunA17_Chr8g0375181 | 36.000 | 700 | 345 | 15 | 41 | 713 | 245 | 868 | 1.24e-121 | 401 |
| Msa0815320 | MtrunA17_Chr8g0375191 | 35.854 | 714 | 343 | 15 | 24 | 713 | 174 | 796 | 1.94e-120 | 397 |
| Msa0815320 | MtrunA17_Chr3g0094211 | 36.143 | 700 | 335 | 16 | 34 | 713 | 177 | 784 | 3.69e-120 | 383 |
| Msa0815320 | MtrunA17_Chr8g0375151 | 36.638 | 696 | 342 | 15 | 41 | 713 | 141 | 760 | 3.89e-120 | 397 |
| Msa0815320 | MtrunA17_Chr5g0433341 | 77.249 | 189 | 43 | 0 | 433 | 621 | 2 | 190 | 2.87e-98 | 300 |
| Msa0815320 | MtrunA17_Chr8g0375861 | 32.353 | 510 | 282 | 16 | 52 | 541 | 193 | 659 | 1.64e-59 | 218 |
| Msa0815320 | MtrunA17_Chr8g0375871 | 32.353 | 510 | 282 | 16 | 52 | 541 | 193 | 659 | 1.70e-59 | 218 |
| Msa0815320 | MtrunA17_Chr3g0117771 | 68.478 | 92 | 28 | 1 | 2 | 93 | 212 | 302 | 7.99e-37 | 140 |
| Msa0815320 | MtrunA17_Chr8g0343741 | 32.632 | 285 | 149 | 6 | 432 | 712 | 961 | 1206 | 1.57e-30 | 129 |
| Msa0815320 | MtrunA17_Chr5g0422511 | 31.655 | 278 | 152 | 6 | 436 | 712 | 450 | 690 | 8.64e-29 | 123 |
| Msa0815320 | MtrunA17_Chr2g0334291 | 34.539 | 304 | 135 | 12 | 433 | 713 | 1741 | 2003 | 1.13e-26 | 117 |
| Msa0815320 | MtrunA17_Chr1g0173701 | 32.083 | 240 | 126 | 5 | 474 | 712 | 108 | 311 | 1.75e-25 | 109 |
| Msa0815320 | MtrunA17_Chr5g0433331 | 87.931 | 58 | 7 | 0 | 656 | 713 | 2 | 59 | 2.01e-25 | 103 |
| Msa0815320 | MtrunA17_Chr5g0400101 | 29.032 | 279 | 154 | 6 | 437 | 712 | 611 | 848 | 2.81e-21 | 99.8 |
| Msa0815320 | MtrunA17_Chr7g0257921 | 44.828 | 116 | 55 | 6 | 446 | 557 | 350 | 460 | 2.67e-13 | 73.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0815320 | AT1G65810.2 | 42.098 | 734 | 298 | 14 | 2 | 713 | 137 | 765 | 1.66e-167 | 508 |
| Msa0815320 | AT1G65810.3 | 42.098 | 734 | 298 | 14 | 2 | 713 | 137 | 765 | 1.91e-167 | 508 |
| Msa0815320 | AT1G65810.1 | 42.098 | 734 | 298 | 14 | 2 | 713 | 137 | 765 | 2.14e-167 | 509 |
| Msa0815320 | AT4G05540.1 | 42.857 | 721 | 314 | 19 | 5 | 713 | 11 | 645 | 4.05e-162 | 484 |
| Msa0815320 | AT5G37150.1 | 40.884 | 724 | 312 | 14 | 2 | 713 | 122 | 741 | 2.82e-158 | 479 |
| Msa0815320 | AT5G52090.1 | 43.263 | 668 | 277 | 16 | 58 | 713 | 1 | 578 | 6.99e-157 | 470 |
| Msa0815320 | AT5G37140.1 | 44.211 | 665 | 285 | 19 | 53 | 713 | 12 | 594 | 2.94e-156 | 469 |
| Msa0815320 | AT1G65780.1 | 38.272 | 729 | 363 | 16 | 2 | 713 | 122 | 780 | 6.00e-140 | 437 |
| Msa0815320 | AT5G37165.1 | 47.283 | 368 | 151 | 9 | 349 | 713 | 1 | 328 | 7.37e-89 | 285 |
| Msa0815320 | AT5G37030.1 | 53.571 | 252 | 79 | 4 | 464 | 713 | 347 | 562 | 2.52e-74 | 253 |
| Msa0815320 | AT5G37030.1 | 44.751 | 181 | 92 | 3 | 78 | 257 | 167 | 340 | 8.15e-33 | 135 |
| Msa0815320 | AT5G37160.1 | 36.789 | 299 | 147 | 7 | 4 | 272 | 140 | 426 | 1.78e-45 | 169 |
| Msa0815320 | AT4G15570.2 | 32.258 | 279 | 150 | 8 | 436 | 712 | 365 | 606 | 4.70e-29 | 124 |
| Msa0815320 | AT4G15570.4 | 32.258 | 279 | 150 | 8 | 436 | 712 | 365 | 606 | 4.70e-29 | 124 |
| Msa0815320 | AT4G15570.3 | 32.258 | 279 | 150 | 8 | 436 | 712 | 454 | 695 | 4.88e-29 | 124 |
| Msa0815320 | AT4G15570.1 | 32.258 | 279 | 150 | 8 | 436 | 712 | 454 | 695 | 4.88e-29 | 124 |
| Msa0815320 | AT2G19120.1 | 31.206 | 282 | 157 | 5 | 432 | 712 | 741 | 986 | 1.42e-28 | 123 |
| Msa0815320 | AT4G30100.2 | 31.449 | 283 | 155 | 6 | 432 | 712 | 904 | 1149 | 4.60e-28 | 121 |
| Msa0815320 | AT4G30100.1 | 31.449 | 283 | 155 | 6 | 432 | 712 | 904 | 1149 | 4.60e-28 | 121 |
| Msa0815320 | AT1G16800.2 | 32.203 | 295 | 146 | 10 | 436 | 713 | 1672 | 1929 | 1.62e-23 | 107 |
| Msa0815320 | AT1G16800.3 | 32.203 | 295 | 146 | 10 | 436 | 713 | 1602 | 1859 | 1.66e-23 | 107 |
| Msa0815320 | AT1G16800.1 | 32.203 | 295 | 146 | 10 | 436 | 713 | 1560 | 1817 | 1.81e-23 | 107 |
| Msa0815320 | AT5G47010.1 | 29.293 | 297 | 166 | 6 | 419 | 712 | 605 | 860 | 2.18e-22 | 103 |
| Msa0815320 | AT2G03270.1 | 40.476 | 126 | 70 | 5 | 440 | 563 | 339 | 461 | 3.95e-14 | 76.6 |
Find 98 sgRNAs with CRISPR-Local
Find 136 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGACAACAAATATTCGTATT+TGG | 0.189870 | 5_3:-48857991 | Msa0815320:CDS |
| ATGCTAATGTCAAACTTATA+TGG | 0.200884 | 5_3:-48857430 | Msa0815320:CDS |
| CTTCAACATTGCATTCTTAT+AGG | 0.208240 | 5_3:-48856375 | Msa0815320:CDS |
| AGTTTGTAAAGAAGAGATTT+TGG | 0.221145 | 5_3:-48856848 | Msa0815320:CDS |
| AGCTGCAAAGTTTGCATGTT+TGG | 0.229288 | 5_3:-48857560 | Msa0815320:CDS |
| GTCTTCTTCCAACCAGTTAA+TGG | 0.244127 | 5_3:+48857125 | None:intergenic |
| CAAATTCCTCAAGGGACTTA+TGG | 0.262055 | 5_3:+48857042 | None:intergenic |
| CTTGAATTGCTCAGGTCTAT+TGG | 0.288063 | 5_3:-48856726 | Msa0815320:CDS |
| TTTCGGCAAGTGTGTGTATA+AGG | 0.301266 | 5_3:+48856791 | None:intergenic |
| TTTGCATGGAAACAAGCTTA+TGG | 0.309050 | 5_3:+48856113 | None:intergenic |
| AAGAAGTATGTTTGAGAGAT+TGG | 0.310939 | 5_3:-48856190 | Msa0815320:CDS |
| GCTAAGGGTAAAGAGAAATT+TGG | 0.314735 | 5_3:-48855982 | Msa0815320:CDS |
| ATTGCTGATAATTGTGGATT+TGG | 0.318750 | 5_3:-48856213 | Msa0815320:CDS |
| TATAATAAAAGTTTCCTTGA+TGG | 0.331006 | 5_3:-48856039 | Msa0815320:CDS |
| TTTGAGAGATTGGTATTGTT+AGG | 0.349863 | 5_3:-48856180 | Msa0815320:CDS |
| GAGCATGATACGTATGGTTT+AGG | 0.349947 | 5_3:-48857257 | Msa0815320:CDS |
| GTTAGTGTTCGTTCTGTTGA+CGG | 0.352563 | 5_3:-48855664 | Msa0815320:CDS |
| TGCTAATGTCAAACTTATAT+GGG | 0.352761 | 5_3:-48857429 | Msa0815320:CDS |
| TTAGGTGACATTGTGCTCTT+TGG | 0.353780 | 5_3:-48857239 | Msa0815320:CDS |
| GCAAGTGAAATGAAAGATTT+CGG | 0.359478 | 5_3:+48856774 | None:intergenic |
| TGTGTACAGTTTAATAGAAC+TGG | 0.360171 | 5_3:+48856488 | None:intergenic |
| CGCTATTCCATTGCAGCTAC+CGG | 0.368033 | 5_3:-48856400 | Msa0815320:CDS |
| AAAGCAAACCTAGTATTCTA+AGG | 0.375799 | 5_3:+48856601 | None:intergenic |
| CCATCTATTTCAGAGTTAGA+TGG | 0.383664 | 5_3:+48856627 | None:intergenic |
| GATGGTTTCCTTAGAATACT+AGG | 0.397818 | 5_3:-48856609 | Msa0815320:CDS |
| CTTGAACCTGGCTTGATACA+AGG | 0.400444 | 5_3:+48856698 | None:intergenic |
| ATTATTCTTCCTGAACTCAA+TGG | 0.411055 | 5_3:-48856570 | Msa0815320:CDS |
| AAGGTTGCATAGTTTAGTTA+TGG | 0.412898 | 5_3:-48857288 | Msa0815320:CDS |
| CACTTGCAAAACTGCAGTAT+TGG | 0.413346 | 5_3:+48857316 | None:intergenic |
| AAATTAAACGTGCGTTCGAC+AGG | 0.414329 | 5_3:+48856523 | None:intergenic |
| TATTTGTTGTCATGTTCATC+AGG | 0.419253 | 5_3:+48858002 | None:intergenic |
| CCATCTAACTCTGAAATAGA+TGG | 0.419828 | 5_3:-48856627 | Msa0815320:CDS |
| AGGTAAACTGCATACATCTT+TGG | 0.423455 | 5_3:+48858022 | None:intergenic |
| TTCAGGAAGAATAATTGAAC+TGG | 0.424783 | 5_3:+48856578 | None:intergenic |
| TGACCTCTCCCATTGAGTTC+AGG | 0.427701 | 5_3:+48856561 | None:intergenic |
| TTCTGATGCTCCGGCTGTCA+TGG | 0.430761 | 5_3:-48856070 | Msa0815320:CDS |
| GATAATTCAAAGCCTTAGAA+AGG | 0.433219 | 5_3:-48855908 | Msa0815320:CDS |
| TTCGAGCCCTTGAATTGCTC+AGG | 0.433315 | 5_3:-48856734 | Msa0815320:CDS |
| ATTCAAGTCATCTACTCTCT+TGG | 0.434569 | 5_3:+48858165 | None:intergenic |
| ATATGGGGACCACCAGGGAC+TGG | 0.438660 | 5_3:-48857413 | Msa0815320:CDS |
| TTCAAGTCATCTACTCTCTT+GGG | 0.449605 | 5_3:+48858166 | None:intergenic |
| GTAGACAGTTATCCAGGTCT+TGG | 0.454268 | 5_3:-48857197 | Msa0815320:CDS |
| TTATTCTTCCTGAACTCAAT+GGG | 0.459864 | 5_3:-48856569 | Msa0815320:CDS |
| ATCATTTAGAAACTGGATCA+TGG | 0.460114 | 5_3:+48857094 | None:intergenic |
| CAATAGACCTGAGCAATTCA+AGG | 0.474923 | 5_3:+48856727 | None:intergenic |
| ATGAAAGTAGACAGTTATCC+AGG | 0.482340 | 5_3:-48857203 | Msa0815320:CDS |
| CTCATCCGATTCATATTCCT+CGG | 0.484865 | 5_3:+48856905 | None:intergenic |
| AGGCGATGAGAAACAACTTC+CGG | 0.485744 | 5_3:-48856355 | Msa0815320:CDS |
| GGAGTCAGAGGGCGAACACC+TGG | 0.497458 | 5_3:-48857954 | Msa0815320:CDS |
| AATAACATAAGCAACATTGT+AGG | 0.500024 | 5_3:+48858129 | None:intergenic |
| AAACTTATATGGGGACCACC+AGG | 0.518565 | 5_3:-48857419 | Msa0815320:CDS |
| TATGGGGACCACCAGGGACT+GGG | 0.521092 | 5_3:-48857412 | Msa0815320:CDS |
| AATTGAAAGTTTCATGACAC+TGG | 0.522790 | 5_3:-48856874 | Msa0815320:CDS |
| CATTGCCGAGGAATATGAAT+CGG | 0.523952 | 5_3:-48856910 | Msa0815320:CDS |
| GAATATCCTTGTATCAAGCC+AGG | 0.528351 | 5_3:-48856704 | Msa0815320:CDS |
| AAGCATACATTTCTCCATCA+AGG | 0.528385 | 5_3:+48856025 | None:intergenic |
| ATAATTCAAAGCCTTAGAAA+GGG | 0.533137 | 5_3:-48855907 | Msa0815320:CDS |
| ACAAAGAAGAAAGTTAGCAT+TGG | 0.535667 | 5_3:-48855772 | Msa0815320:CDS |
| TTTCATTAACAAATTCCTCA+AGG | 0.536867 | 5_3:+48857033 | None:intergenic |
| TCACTTGAGCATGATACGTA+TGG | 0.537216 | 5_3:-48857263 | Msa0815320:CDS |
| AGGATTATGTGCAGAAGTTG+TGG | 0.537283 | 5_3:-48856938 | Msa0815320:CDS |
| TTCATTAACAAATTCCTCAA+GGG | 0.538823 | 5_3:+48857034 | None:intergenic |
| ATAACATAAGCAACATTGTA+GGG | 0.540253 | 5_3:+48858130 | None:intergenic |
| TAGCTTTCTTCCATGACAGC+CGG | 0.543420 | 5_3:+48856060 | None:intergenic |
| TGAAGACCCGGTAGCTGCAA+TGG | 0.553800 | 5_3:+48856393 | None:intergenic |
| TCTTCAGACTGTGTCCTCCT+CGG | 0.553884 | 5_3:+48855959 | None:intergenic |
| CATGGAAACAAGCTTATGGA+TGG | 0.557115 | 5_3:+48856117 | None:intergenic |
| GGATTATGTGCAGAAGTTGT+GGG | 0.559994 | 5_3:-48856937 | Msa0815320:CDS |
| AAACTGGATCATGGATTCCA+AGG | 0.564322 | 5_3:+48857103 | None:intergenic |
| AGCATTGAACTCGGAGTCAG+AGG | 0.566836 | 5_3:-48857966 | Msa0815320:CDS |
| GCTATTCCATTGCAGCTACC+GGG | 0.568261 | 5_3:-48856399 | Msa0815320:CDS |
| TCATCATAGAACTCTTTGCA+TGG | 0.568475 | 5_3:+48856099 | None:intergenic |
| AACTGGTTGGAAGAAGACCT+TGG | 0.569945 | 5_3:-48857120 | Msa0815320:CDS |
| GCCTCACTGAATTTGACTTG+AGG | 0.572438 | 5_3:-48858057 | Msa0815320:CDS |
| GACATTGTGCTCTTTGGCAA+TGG | 0.573866 | 5_3:-48857233 | Msa0815320:CDS |
| TGCAAAACTGCAGTATTGGT+CGG | 0.579954 | 5_3:+48857320 | None:intergenic |
| TCTATTAAACTGTACACAGA+AGG | 0.598629 | 5_3:-48856483 | Msa0815320:CDS |
| CTTCCTGAACTCAATGGGAG+AGG | 0.599736 | 5_3:-48856564 | Msa0815320:CDS |
| TGATGATACTATGACACTTG+AGG | 0.602005 | 5_3:-48856958 | Msa0815320:CDS |
| TTAGATGGTTCAAAGCAAGC+AGG | 0.606292 | 5_3:+48856642 | None:intergenic |
| AATAGACCTGAGCAATTCAA+GGG | 0.607483 | 5_3:+48856728 | None:intergenic |
| TATTTGGAAAGCATTGAACT+CGG | 0.611582 | 5_3:-48857975 | Msa0815320:CDS |
| AGAATGCAATGTTGAAGACC+CGG | 0.616595 | 5_3:+48856381 | None:intergenic |
| ATGGAGCAAAACATTGCATG+AGG | 0.617067 | 5_3:+48857144 | None:intergenic |
| AAAATCTGTATCAGAAACTG+AGG | 0.625678 | 5_3:+48855690 | None:intergenic |
| AAAGAGAAATTTGGCCGAGG+AGG | 0.626517 | 5_3:-48855973 | Msa0815320:CDS |
| CGGTAGCTGCAATGGAATAG+CGG | 0.631790 | 5_3:+48856401 | None:intergenic |
| GGTAAAGAGAAATTTGGCCG+AGG | 0.644287 | 5_3:-48855976 | Msa0815320:CDS |
| GCTAATGTCAAACTTATATG+GGG | 0.644828 | 5_3:-48857428 | Msa0815320:CDS |
| ATTGGTCGGAGCACATGTCA+AGG | 0.644967 | 5_3:+48857334 | None:intergenic |
| TCCGGCATTAGTCAAAAGCA+AGG | 0.651579 | 5_3:-48856337 | Msa0815320:intron |
| GCATTGAACTCGGAGTCAGA+GGG | 0.653718 | 5_3:-48857965 | Msa0815320:CDS |
| AACTTATATGGGGACCACCA+GGG | 0.658833 | 5_3:-48857418 | Msa0815320:CDS |
| TCCTCAAGTCAAATTCAGTG+AGG | 0.672268 | 5_3:+48858056 | None:intergenic |
| GATTATGTGCAGAAGTTGTG+GGG | 0.683227 | 5_3:-48856936 | Msa0815320:CDS |
| GATGGGCCATAAGTCCCTTG+AGG | 0.683524 | 5_3:-48857048 | Msa0815320:CDS |
| GTGATTCTTACATTGAGACA+AGG | 0.684508 | 5_3:+48857908 | None:intergenic |
| GTTGTGGGGAGACATTGCCG+AGG | 0.762702 | 5_3:-48856922 | Msa0815320:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TCAGAAAAATATTCTTTTTT+GGG | + | chr5_3:48856725-48856744 | None:intergenic | 15.0% |
| !! | AAGGATAAACTAAATTCAAA+AGG | + | chr5_3:48855926-48855945 | None:intergenic | 20.0% |
| !! | TACTTCTACATAATTATTGA+AGG | + | chr5_3:48856120-48856139 | None:intergenic | 20.0% |
| !!! | CTCAGAAAAATATTCTTTTT+TGG | + | chr5_3:48856726-48856745 | None:intergenic | 20.0% |
| !!! | AAAAGAATATTTTTCTGAGA+TGG | - | chr5_3:48856727-48856746 | Msa0815320:CDS | 20.0% |
| !!! | AAAGAATATTTTTCTGAGAT+GGG | - | chr5_3:48856728-48856747 | Msa0815320:CDS | 20.0% |
| !! | AACAAATTAAGCCTAAAAAA+AGG | + | chr5_3:48857500-48857519 | None:intergenic | 20.0% |
| !! | TATAATAAAAGTTTCCTTGA+TGG | - | chr5_3:48857754-48857773 | Msa0815320:intron | 20.0% |
| !!! | TTCTTTTATTAACATAGCTA+AGG | - | chr5_3:48857795-48857814 | Msa0815320:intron | 20.0% |
| !!! | TCTTTTATTAACATAGCTAA+GGG | - | chr5_3:48857796-48857815 | Msa0815320:intron | 20.0% |
| ! | ATAACATAAGCAACATTGTA+GGG | + | chr5_3:48855666-48855685 | None:intergenic | 25.0% |
| ! | AATAACATAAGCAACATTGT+AGG | + | chr5_3:48855667-48855686 | None:intergenic | 25.0% |
| ! | TGACAACAAATATTCGTATT+TGG | - | chr5_3:48855802-48855821 | Msa0815320:CDS | 25.0% |
| !!! | AAACTTTTTTAATGATGTCC+AGG | + | chr5_3:48855860-48855879 | None:intergenic | 25.0% |
| !! | GCAGAGCTTTATATTTAAAA+AGG | + | chr5_3:48855945-48855964 | None:intergenic | 25.0% |
| ! | TGAAAAGTAAGCATTTACAT+AGG | + | chr5_3:48856028-48856047 | None:intergenic | 25.0% |
| ! | ATGCTAATGTCAAACTTATA+TGG | - | chr5_3:48856363-48856382 | Msa0815320:CDS | 25.0% |
| ! | TGCTAATGTCAAACTTATAT+GGG | - | chr5_3:48856364-48856383 | Msa0815320:CDS | 25.0% |
| ! | TTCATTAACAAATTCCTCAA+GGG | + | chr5_3:48856762-48856781 | None:intergenic | 25.0% |
| ! | TTTCATTAACAAATTCCTCA+AGG | + | chr5_3:48856763-48856782 | None:intergenic | 25.0% |
| !! | AGTTTGTAAAGAAGAGATTT+TGG | - | chr5_3:48856945-48856964 | Msa0815320:CDS | 25.0% |
| !! | GTTTGTAAAGAAGAGATTTT+GGG | - | chr5_3:48856946-48856965 | Msa0815320:CDS | 25.0% |
| ! | ATTAAGCCTAAAAAAAGGTA+AGG | + | chr5_3:48857495-48857514 | None:intergenic | 25.0% |
| !! | TTTTAGATTGCTGATAATTG+TGG | - | chr5_3:48857574-48857593 | Msa0815320:intron | 25.0% |
| ! | ATAATTCAAAGCCTTAGAAA+GGG | - | chr5_3:48857886-48857905 | Msa0815320:intron | 25.0% |
| !!! | TGTAACATCTACTTTTGTTT+TGG | - | chr5_3:48857984-48858003 | Msa0815320:CDS | 25.0% |
| ! | TCACCAGAAAAATCATCTTT+TGG | + | chr5_3:48855693-48855712 | None:intergenic | 30.0% |
| !! | TATTTGTTGTCATGTTCATC+AGG | + | chr5_3:48855794-48855813 | None:intergenic | 30.0% |
| !! | TATTTGGAAAGCATTGAACT+CGG | - | chr5_3:48855818-48855837 | Msa0815320:CDS | 30.0% |
| GCTAATGTCAAACTTATATG+GGG | - | chr5_3:48856365-48856384 | Msa0815320:CDS | 30.0% | |
| AAGGTTGCATAGTTTAGTTA+TGG | - | chr5_3:48856505-48856524 | Msa0815320:CDS | 30.0% | |
| ATCATTTAGAAACTGGATCA+TGG | + | chr5_3:48856702-48856721 | None:intergenic | 30.0% | |
| !!! | TTTTGGGATCATTTAGAAAC+TGG | + | chr5_3:48856709-48856728 | None:intergenic | 30.0% |
| AATTGAAAGTTTCATGACAC+TGG | - | chr5_3:48856919-48856938 | Msa0815320:CDS | 30.0% | |
| GCAAGTGAAATGAAAGATTT+CGG | + | chr5_3:48857022-48857041 | None:intergenic | 30.0% | |
| AAAGCAAACCTAGTATTCTA+AGG | + | chr5_3:48857195-48857214 | None:intergenic | 30.0% | |
| TTCAGGAAGAATAATTGAAC+TGG | + | chr5_3:48857218-48857237 | None:intergenic | 30.0% | |
| ATTATTCTTCCTGAACTCAA+TGG | - | chr5_3:48857223-48857242 | Msa0815320:CDS | 30.0% | |
| TTATTCTTCCTGAACTCAAT+GGG | - | chr5_3:48857224-48857243 | Msa0815320:CDS | 30.0% | |
| TGTGTACAGTTTAATAGAAC+TGG | + | chr5_3:48857308-48857327 | None:intergenic | 30.0% | |
| TCTATTAAACTGTACACAGA+AGG | - | chr5_3:48857310-48857329 | Msa0815320:CDS | 30.0% | |
| CTTCAACATTGCATTCTTAT+AGG | - | chr5_3:48857418-48857437 | Msa0815320:CDS | 30.0% | |
| !!! | CTTGATCCTTACCTTTTTTT+AGG | - | chr5_3:48857486-48857505 | Msa0815320:CDS | 30.0% |
| ATTGCTGATAATTGTGGATT+TGG | - | chr5_3:48857580-48857599 | Msa0815320:intron | 30.0% | |
| ! | AAGAAGTATGTTTGAGAGAT+TGG | - | chr5_3:48857603-48857622 | Msa0815320:intron | 30.0% |
| TTTGAGAGATTGGTATTGTT+AGG | - | chr5_3:48857613-48857632 | Msa0815320:intron | 30.0% | |
| TGAAAAAATTTCTGATGCTC+CGG | - | chr5_3:48857714-48857733 | Msa0815320:intron | 30.0% | |
| GATAATTCAAAGCCTTAGAA+AGG | - | chr5_3:48857885-48857904 | Msa0815320:intron | 30.0% | |
| AAGAAAAACAACCCTTTCTA+AGG | + | chr5_3:48857900-48857919 | None:intergenic | 30.0% | |
| ACAAAGAAGAAAGTTAGCAT+TGG | - | chr5_3:48858021-48858040 | Msa0815320:CDS | 30.0% | |
| ! | TCAAAAACTTGAGCATTGTA+TGG | + | chr5_3:48858057-48858076 | None:intergenic | 30.0% |
| !!! | TGCTCAAGTTTTTGAAATTC+AGG | - | chr5_3:48858062-48858081 | Msa0815320:CDS | 30.0% |
| AAAATCTGTATCAGAAACTG+AGG | + | chr5_3:48858106-48858125 | None:intergenic | 30.0% | |
| TTCAAGTCATCTACTCTCTT+GGG | + | chr5_3:48855630-48855649 | None:intergenic | 35.0% | |
| ATTCAAGTCATCTACTCTCT+TGG | + | chr5_3:48855631-48855650 | None:intergenic | 35.0% | |
| ! | GCTCCAAAAGATGATTTTTC+TGG | - | chr5_3:48855687-48855706 | Msa0815320:CDS | 35.0% |
| AGGTAAACTGCATACATCTT+TGG | + | chr5_3:48855774-48855793 | None:intergenic | 35.0% | |
| GTGATTCTTACATTGAGACA+AGG | + | chr5_3:48855888-48855907 | None:intergenic | 35.0% | |
| TTGTTTACTTGCATAGGCAT+AGG | + | chr5_3:48855989-48856008 | None:intergenic | 35.0% | |
| ! | TTGAGCTTGTTTACTTGCAT+AGG | + | chr5_3:48855995-48856014 | None:intergenic | 35.0% |
| ATGAAAGTAGACAGTTATCC+AGG | - | chr5_3:48856590-48856609 | Msa0815320:CDS | 35.0% | |
| AGAAAAATATCTCCAAGACC+TGG | + | chr5_3:48856611-48856630 | None:intergenic | 35.0% | |
| ! | CAATGTTTTGCTCCATTAAC+TGG | - | chr5_3:48856656-48856675 | Msa0815320:CDS | 35.0% |
| TGATGATACTATGACACTTG+AGG | - | chr5_3:48856835-48856854 | Msa0815320:CDS | 35.0% | |
| AATAGACCTGAGCAATTCAA+GGG | + | chr5_3:48857068-48857087 | None:intergenic | 35.0% | |
| ! | ATCAAGAGTTTTCTTGAACC+TGG | + | chr5_3:48857110-48857129 | None:intergenic | 35.0% |
| CCATCTATTTCAGAGTTAGA+TGG | + | chr5_3:48857169-48857188 | None:intergenic | 35.0% | |
| !! | CCATCTAACTCTGAAATAGA+TGG | - | chr5_3:48857166-48857185 | Msa0815320:CDS | 35.0% |
| GATGGTTTCCTTAGAATACT+AGG | - | chr5_3:48857184-48857203 | Msa0815320:CDS | 35.0% | |
| TTTGCATGGAAACAAGCTTA+TGG | + | chr5_3:48857683-48857702 | None:intergenic | 35.0% | |
| TCATCATAGAACTCTTTGCA+TGG | + | chr5_3:48857697-48857716 | None:intergenic | 35.0% | |
| AAGCATACATTTCTCCATCA+AGG | + | chr5_3:48857771-48857790 | None:intergenic | 35.0% | |
| GCTAAGGGTAAAGAGAAATT+TGG | - | chr5_3:48857811-48857830 | Msa0815320:intron | 35.0% | |
| TCCTCAAGTCAAATTCAGTG+AGG | + | chr5_3:48855740-48855759 | None:intergenic | 40.0% | |
| AGCTGCAAAGTTTGCATGTT+TGG | - | chr5_3:48856233-48856252 | Msa0815320:intron | 40.0% | |
| !! | TGCAAAACTGCAGTATTGGT+CGG | + | chr5_3:48856476-48856495 | None:intergenic | 40.0% |
| CACTTGCAAAACTGCAGTAT+TGG | + | chr5_3:48856480-48856499 | None:intergenic | 40.0% | |
| ! | CAATACTGCAGTTTTGCAAG+TGG | - | chr5_3:48856478-48856497 | Msa0815320:CDS | 40.0% |
| TCACTTGAGCATGATACGTA+TGG | - | chr5_3:48856530-48856549 | Msa0815320:CDS | 40.0% | |
| GAGCATGATACGTATGGTTT+AGG | - | chr5_3:48856536-48856555 | Msa0815320:CDS | 40.0% | |
| TTAGGTGACATTGTGCTCTT+TGG | - | chr5_3:48856554-48856573 | Msa0815320:CDS | 40.0% | |
| ATGGAGCAAAACATTGCATG+AGG | + | chr5_3:48856652-48856671 | None:intergenic | 40.0% | |
| ! | GTTTTGCTCCATTAACTGGT+TGG | - | chr5_3:48856660-48856679 | Msa0815320:CDS | 40.0% |
| GTCTTCTTCCAACCAGTTAA+TGG | + | chr5_3:48856671-48856690 | None:intergenic | 40.0% | |
| AAACTGGATCATGGATTCCA+AGG | + | chr5_3:48856693-48856712 | None:intergenic | 40.0% | |
| CAAATTCCTCAAGGGACTTA+TGG | + | chr5_3:48856754-48856773 | None:intergenic | 40.0% | |
| AGGATTATGTGCAGAAGTTG+TGG | - | chr5_3:48856855-48856874 | Msa0815320:CDS | 40.0% | |
| GGATTATGTGCAGAAGTTGT+GGG | - | chr5_3:48856856-48856875 | Msa0815320:CDS | 40.0% | |
| GATTATGTGCAGAAGTTGTG+GGG | - | chr5_3:48856857-48856876 | Msa0815320:CDS | 40.0% | |
| CATTGCCGAGGAATATGAAT+CGG | - | chr5_3:48856883-48856902 | Msa0815320:CDS | 40.0% | |
| CTCATCCGATTCATATTCCT+CGG | + | chr5_3:48856891-48856910 | None:intergenic | 40.0% | |
| TTTCGGCAAGTGTGTGTATA+AGG | + | chr5_3:48857005-48857024 | None:intergenic | 40.0% | |
| CAATAGACCTGAGCAATTCA+AGG | + | chr5_3:48857069-48857088 | None:intergenic | 40.0% | |
| CTTGAATTGCTCAGGTCTAT+TGG | - | chr5_3:48857067-48857086 | Msa0815320:CDS | 40.0% | |
| GAATATCCTTGTATCAAGCC+AGG | - | chr5_3:48857089-48857108 | Msa0815320:CDS | 40.0% | |
| TTAGATGGTTCAAAGCAAGC+AGG | + | chr5_3:48857154-48857173 | None:intergenic | 40.0% | |
| AAATTAAACGTGCGTTCGAC+AGG | + | chr5_3:48857273-48857292 | None:intergenic | 40.0% | |
| AGAATGCAATGTTGAAGACC+CGG | + | chr5_3:48857415-48857434 | None:intergenic | 40.0% | |
| !! | ACCTTGCTTTTGACTAATGC+CGG | + | chr5_3:48857460-48857479 | None:intergenic | 40.0% |
| CATGGAAACAAGCTTATGGA+TGG | + | chr5_3:48857679-48857698 | None:intergenic | 40.0% | |
| !!! | TTGTTTTGGCAGAGTTTACG+AGG | - | chr5_3:48857998-48858017 | Msa0815320:CDS | 40.0% |
| GTTAGTGTTCGTTCTGTTGA+CGG | - | chr5_3:48858129-48858148 | Msa0815320:CDS | 40.0% | |
| !! | GCCTCACTGAATTTGACTTG+AGG | - | chr5_3:48855736-48855755 | Msa0815320:CDS | 45.0% |
| AAACTTATATGGGGACCACC+AGG | - | chr5_3:48856374-48856393 | Msa0815320:CDS | 45.0% | |
| AACTTATATGGGGACCACCA+GGG | - | chr5_3:48856375-48856394 | Msa0815320:CDS | 45.0% | |
| ! | CAGTTTTGCAAGTGGCAACA+AGG | - | chr5_3:48856486-48856505 | Msa0815320:CDS | 45.0% |
| GACATTGTGCTCTTTGGCAA+TGG | - | chr5_3:48856560-48856579 | Msa0815320:CDS | 45.0% | |
| GTAGACAGTTATCCAGGTCT+TGG | - | chr5_3:48856596-48856615 | Msa0815320:CDS | 45.0% | |
| AACTGGTTGGAAGAAGACCT+TGG | - | chr5_3:48856673-48856692 | Msa0815320:CDS | 45.0% | |
| ! | CTTGAACCTGGCTTGATACA+AGG | + | chr5_3:48857098-48857117 | None:intergenic | 45.0% |
| AGGCGATGAGAAACAACTTC+CGG | - | chr5_3:48857438-48857457 | Msa0815320:CDS | 45.0% | |
| TCCGGCATTAGTCAAAAGCA+AGG | - | chr5_3:48857456-48857475 | Msa0815320:CDS | 45.0% | |
| TAGCTTTCTTCCATGACAGC+CGG | + | chr5_3:48857736-48857755 | None:intergenic | 45.0% | |
| GGTAAAGAGAAATTTGGCCG+AGG | - | chr5_3:48857817-48857836 | Msa0815320:intron | 45.0% | |
| AAAGAGAAATTTGGCCGAGG+AGG | - | chr5_3:48857820-48857839 | Msa0815320:intron | 45.0% | |
| ! | CGTTCTGTTGACGGTTTTCA+AGG | - | chr5_3:48858138-48858157 | Msa0815320:CDS | 45.0% |
| !! | TCTGTTGACGGTTTTCAAGG+TGG | - | chr5_3:48858141-48858160 | Msa0815320:CDS | 45.0% |
| ! | AGCATTGAACTCGGAGTCAG+AGG | - | chr5_3:48855827-48855846 | Msa0815320:CDS | 50.0% |
| GCATTGAACTCGGAGTCAGA+GGG | - | chr5_3:48855828-48855847 | Msa0815320:CDS | 50.0% | |
| !! | TTTGTTTTCCCAGTCCCTGG+TGG | + | chr5_3:48856392-48856411 | None:intergenic | 50.0% |
| !!! | GTCTTTGTTTTCCCAGTCCC+TGG | + | chr5_3:48856395-48856414 | None:intergenic | 50.0% |
| ATTGGTCGGAGCACATGTCA+AGG | + | chr5_3:48856462-48856481 | None:intergenic | 50.0% | |
| TTCGAGCCCTTGAATTGCTC+AGG | - | chr5_3:48857059-48857078 | Msa0815320:CDS | 50.0% | |
| CTTCCTGAACTCAATGGGAG+AGG | - | chr5_3:48857229-48857248 | Msa0815320:CDS | 50.0% | |
| TGACCTCTCCCATTGAGTTC+AGG | + | chr5_3:48857235-48857254 | None:intergenic | 50.0% | |
| CGGTAGCTGCAATGGAATAG+CGG | + | chr5_3:48857395-48857414 | None:intergenic | 50.0% | |
| CGCTATTCCATTGCAGCTAC+CGG | - | chr5_3:48857393-48857412 | Msa0815320:CDS | 50.0% | |
| GCTATTCCATTGCAGCTACC+GGG | - | chr5_3:48857394-48857413 | Msa0815320:CDS | 50.0% | |
| TCTTCAGACTGTGTCCTCCT+CGG | + | chr5_3:48857837-48857856 | None:intergenic | 50.0% | |
| GATGGGCCATAAGTCCCTTG+AGG | - | chr5_3:48856745-48856764 | Msa0815320:CDS | 55.0% | |
| TGAAGACCCGGTAGCTGCAA+TGG | + | chr5_3:48857403-48857422 | None:intergenic | 55.0% | |
| TTCTGATGCTCCGGCTGTCA+TGG | - | chr5_3:48857723-48857742 | Msa0815320:intron | 55.0% | |
| ATATGGGGACCACCAGGGAC+TGG | - | chr5_3:48856380-48856399 | Msa0815320:CDS | 60.0% | |
| TATGGGGACCACCAGGGACT+GGG | - | chr5_3:48856381-48856400 | Msa0815320:CDS | 60.0% | |
| GTTGTGGGGAGACATTGCCG+AGG | - | chr5_3:48856871-48856890 | Msa0815320:CDS | 60.0% | |
| GGAGTCAGAGGGCGAACACC+TGG | - | chr5_3:48855839-48855858 | Msa0815320:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 48855624 | 48858191 | 48855624 | ID=Msa0815320;Name=Msa0815320 |
| chr5_3 | mRNA | 48855624 | 48858191 | 48855624 | ID=Msa0815320-mRNA-1;Parent=Msa0815320;Name=Msa0815320-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|0|0|1|1|1|3|0|713 |
| chr5_3 | exon | 48857919 | 48858191 | 48857919 | ID=Msa0815320-mRNA-1:exon:14659;Parent=Msa0815320-mRNA-1 |
| chr5_3 | exon | 48856338 | 48857591 | 48856338 | ID=Msa0815320-mRNA-1:exon:14658;Parent=Msa0815320-mRNA-1 |
| chr5_3 | exon | 48855624 | 48856235 | 48855624 | ID=Msa0815320-mRNA-1:exon:14657;Parent=Msa0815320-mRNA-1 |
| chr5_3 | CDS | 48857919 | 48858191 | 48857919 | ID=Msa0815320-mRNA-1:cds;Parent=Msa0815320-mRNA-1 |
| chr5_3 | CDS | 48856338 | 48857591 | 48856338 | ID=Msa0815320-mRNA-1:cds;Parent=Msa0815320-mRNA-1 |
| chr5_3 | CDS | 48855624 | 48856235 | 48855624 | ID=Msa0815320-mRNA-1:cds;Parent=Msa0815320-mRNA-1 |
| Gene Sequence |
| Protein sequence |
