Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0736510 | XP_003616176.1 | 95.952 | 420 | 17 | 0 | 1 | 420 | 1 | 420 | 0.0 | 779 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0736510 | sp|F4KGY6|RVE1_ARATH | 46.064 | 343 | 122 | 11 | 21 | 351 | 33 | 324 | 4.24e-55 | 190 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0736510 | G7KFU7 | 95.952 | 420 | 17 | 0 | 1 | 420 | 1 | 420 | 0.0 | 779 |
Gene ID | Type | Classification |
---|---|---|
Msa0736510 | TF | MYB-related |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0736510 | Msa0781840 | 0.841514 | 4.538467e-58 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0736510 | MtrunA17_Chr5g0433851 | 95.952 | 420 | 17 | 0 | 1 | 420 | 1 | 420 | 0.0 | 779 |
Msa0736510 | MtrunA17_Chr3g0109791 | 61.189 | 286 | 103 | 3 | 4 | 288 | 19 | 297 | 1.62e-102 | 308 |
Msa0736510 | MtrunA17_Chr6g0481061 | 37.086 | 453 | 202 | 14 | 24 | 418 | 38 | 465 | 3.09e-56 | 192 |
Msa0736510 | MtrunA17_Chr8g0348391 | 40.000 | 215 | 94 | 6 | 28 | 226 | 49 | 244 | 1.53e-34 | 130 |
Msa0736510 | MtrunA17_Chr1g0181771 | 55.769 | 104 | 38 | 1 | 24 | 127 | 28 | 123 | 2.60e-34 | 129 |
Msa0736510 | MtrunA17_Chr7g0276421 | 67.619 | 105 | 32 | 1 | 23 | 125 | 6 | 110 | 1.18e-32 | 130 |
Msa0736510 | MtrunA17_Chr6g0469431 | 55.882 | 102 | 37 | 2 | 28 | 129 | 35 | 128 | 1.95e-31 | 119 |
Msa0736510 | MtrunA17_Chr4g0030281 | 60.000 | 95 | 34 | 1 | 174 | 264 | 134 | 228 | 1.88e-23 | 103 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0736510 | AT5G17300.1 | 46.064 | 343 | 122 | 11 | 21 | 351 | 33 | 324 | 4.31e-56 | 190 |
Msa0736510 | AT5G37260.1 | 58.537 | 164 | 59 | 3 | 23 | 186 | 16 | 170 | 1.91e-44 | 156 |
Msa0736510 | AT3G10113.1 | 44.105 | 229 | 104 | 6 | 28 | 245 | 50 | 265 | 1.65e-37 | 139 |
Msa0736510 | AT1G18330.1 | 41.224 | 245 | 113 | 7 | 28 | 245 | 35 | 275 | 3.49e-37 | 139 |
Msa0736510 | AT1G18330.2 | 41.224 | 245 | 113 | 7 | 28 | 245 | 61 | 301 | 5.96e-37 | 139 |
Msa0736510 | AT2G46830.1 | 61.798 | 89 | 34 | 0 | 20 | 108 | 1 | 89 | 2.86e-32 | 129 |
Msa0736510 | AT3G09600.2 | 58.586 | 99 | 33 | 2 | 32 | 130 | 32 | 122 | 4.75e-32 | 123 |
Msa0736510 | AT3G09600.6 | 58.586 | 99 | 33 | 2 | 32 | 130 | 32 | 122 | 4.75e-32 | 123 |
Msa0736510 | AT3G09600.1 | 58.586 | 99 | 33 | 2 | 32 | 130 | 32 | 122 | 5.12e-32 | 123 |
Msa0736510 | AT3G09600.7 | 58.586 | 99 | 33 | 2 | 32 | 130 | 32 | 122 | 5.12e-32 | 123 |
Msa0736510 | AT3G09600.4 | 58.586 | 99 | 33 | 2 | 32 | 130 | 32 | 122 | 6.33e-32 | 122 |
Msa0736510 | AT1G01060.8 | 64.486 | 107 | 36 | 1 | 20 | 124 | 1 | 107 | 2.49e-31 | 126 |
Msa0736510 | AT1G01060.2 | 64.486 | 107 | 36 | 1 | 20 | 124 | 1 | 107 | 2.49e-31 | 126 |
Msa0736510 | AT1G01060.3 | 64.486 | 107 | 36 | 1 | 20 | 124 | 1 | 107 | 2.49e-31 | 126 |
Msa0736510 | AT1G01060.1 | 64.486 | 107 | 36 | 1 | 20 | 124 | 1 | 107 | 2.49e-31 | 126 |
Msa0736510 | AT1G01060.7 | 64.486 | 107 | 36 | 1 | 20 | 124 | 1 | 107 | 2.49e-31 | 126 |
Msa0736510 | AT1G01060.4 | 64.486 | 107 | 36 | 1 | 20 | 124 | 1 | 107 | 2.62e-31 | 126 |
Msa0736510 | AT5G52660.2 | 56.122 | 98 | 35 | 1 | 28 | 125 | 57 | 146 | 1.65e-30 | 120 |
Msa0736510 | AT5G52660.1 | 56.122 | 98 | 35 | 1 | 28 | 125 | 57 | 146 | 1.70e-30 | 120 |
Msa0736510 | AT1G01520.2 | 42.208 | 154 | 71 | 3 | 28 | 181 | 46 | 181 | 3.17e-30 | 117 |
Msa0736510 | AT1G01520.4 | 42.208 | 154 | 71 | 3 | 28 | 181 | 46 | 181 | 3.17e-30 | 117 |
Msa0736510 | AT1G01520.3 | 42.208 | 154 | 71 | 3 | 28 | 181 | 46 | 181 | 3.81e-30 | 118 |
Msa0736510 | AT1G01520.1 | 42.208 | 154 | 71 | 3 | 28 | 181 | 46 | 181 | 4.35e-30 | 118 |
Msa0736510 | AT4G01280.2 | 56.863 | 102 | 36 | 2 | 24 | 125 | 40 | 133 | 4.66e-30 | 118 |
Msa0736510 | AT4G01280.1 | 56.863 | 102 | 36 | 2 | 24 | 125 | 40 | 133 | 5.00e-30 | 118 |
Msa0736510 | AT5G02840.4 | 51.304 | 115 | 47 | 3 | 32 | 145 | 37 | 143 | 5.41e-30 | 117 |
Msa0736510 | AT5G02840.1 | 58.511 | 94 | 31 | 2 | 32 | 125 | 37 | 122 | 6.35e-30 | 117 |
Msa0736510 | AT5G02840.2 | 58.511 | 94 | 31 | 2 | 32 | 125 | 37 | 122 | 6.35e-30 | 117 |
Msa0736510 | AT5G02840.3 | 59.140 | 93 | 30 | 2 | 32 | 124 | 37 | 121 | 7.48e-30 | 117 |
Msa0736510 | AT5G02840.5 | 51.304 | 115 | 47 | 3 | 32 | 145 | 37 | 143 | 9.49e-30 | 117 |
Msa0736510 | AT5G17300.2 | 40.940 | 298 | 121 | 12 | 68 | 357 | 5 | 255 | 4.87e-24 | 102 |
Msa0736510 | AT3G09600.3 | 53.125 | 64 | 22 | 2 | 61 | 124 | 5 | 60 | 4.77e-15 | 74.7 |
Msa0736510 | AT3G09600.8 | 53.125 | 64 | 22 | 2 | 61 | 124 | 5 | 60 | 4.77e-15 | 74.7 |
Msa0736510 | AT3G09600.5 | 53.125 | 64 | 22 | 2 | 61 | 124 | 5 | 60 | 5.44e-15 | 74.3 |
Msa0736510 | AT3G09600.9 | 53.125 | 64 | 22 | 2 | 61 | 124 | 5 | 60 | 5.44e-15 | 74.3 |
Find 94 sgRNAs with CRISPR-Local
Find 182 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTCTGATTCTATGGAGATTT+TGG | 0.134813 | 5_1:-52984369 | Msa0736510:intron |
TTCAATTTACATCTATAAAA+TGG | 0.182082 | 5_1:+52981685 | None:intergenic |
ACTTGTCTCTGAAGAAAATT+TGG | 0.184574 | 5_1:-52984429 | Msa0736510:five_prime_UTR |
TCATGATGTACAACCTTTAA+TGG | 0.196529 | 5_1:-52982595 | Msa0736510:intron |
TCGCTTGTGTCGTTAGATTT+TGG | 0.203212 | 5_1:-52982828 | Msa0736510:CDS |
ATCACTGGATTCTGATTCTA+TGG | 0.223131 | 5_1:-52984378 | Msa0736510:exon |
GATTTAAGAAATACCATTAA+AGG | 0.226502 | 5_1:+52982582 | None:intergenic |
CTCTGTTTCGTGATAGTATA+TGG | 0.235573 | 5_1:+52983443 | None:intergenic |
GTAATTCACATTATCACTTT+TGG | 0.280046 | 5_1:+52981898 | None:intergenic |
TTCCTCAGATGATGATGATT+TGG | 0.286247 | 5_1:+52982659 | None:intergenic |
TGGTTGCGACACATTCTTTA+GGG | 0.316667 | 5_1:+52982284 | None:intergenic |
AAGGGTTTGTACCATATAAA+AGG | 0.320529 | 5_1:-52981823 | Msa0736510:CDS |
TCCTTTAAAGAAAATCCTAT+TGG | 0.326367 | 5_1:+52981712 | None:intergenic |
CTTGAAGCTTTAAAGTTATA+CGG | 0.328100 | 5_1:-52983386 | Msa0736510:CDS |
AGAGAAAGAAGAAGATAGAT+AGG | 0.343859 | 5_1:+52984549 | None:intergenic |
GGATGAATCGGCTTCCGTTT+TGG | 0.347869 | 5_1:+52982921 | None:intergenic |
TTGGTTGCGACACATTCTTT+AGG | 0.358230 | 5_1:+52982283 | None:intergenic |
ACAGTGAGACTTAAAACATT+TGG | 0.363877 | 5_1:-52981848 | Msa0736510:CDS |
CCTTATAGTTCCCTCCCAAT+AGG | 0.373169 | 5_1:-52981727 | Msa0736510:exon |
CGCTGAAGTTGCTGCATGGC+AGG | 0.384263 | 5_1:+52982145 | None:intergenic |
CCTATTGGGAGGGAACTATA+AGG | 0.389437 | 5_1:+52981727 | None:intergenic |
AGACTTAAAACATTTGGAAA+AGG | 0.403830 | 5_1:-52981842 | Msa0736510:CDS |
TGATGTCGAAGAAGACTTGC+AGG | 0.408269 | 5_1:+52982189 | None:intergenic |
CCTTTAAAGAAAATCCTATT+GGG | 0.410008 | 5_1:+52981713 | None:intergenic |
TTCCTTGTGCAGTGGCTTGA+AGG | 0.410625 | 5_1:+52982060 | None:intergenic |
TGAGACCGGGGACAAACTTC+CGG | 0.418000 | 5_1:+52982725 | None:intergenic |
GTGGACTATTTCAGACAATT+CGG | 0.423011 | 5_1:-52982083 | Msa0736510:CDS |
CGTATAACTTTAAAGCTTCA+AGG | 0.424014 | 5_1:+52983387 | None:intergenic |
GTCTTGCAACTGTTGTTCCT+TGG | 0.430710 | 5_1:-52982105 | Msa0736510:CDS |
GTTTCTGTTGCCAGATTACA+TGG | 0.434006 | 5_1:-52981646 | Msa0736510:three_prime_UTR |
AGTTGCTGCATGGCAGGAAT+AGG | 0.442858 | 5_1:+52982151 | None:intergenic |
GATAATGTGAATTACTTTGT+TGG | 0.443037 | 5_1:-52981890 | Msa0736510:CDS |
TTGCAACTGTTGTTCCTTGG+TGG | 0.457649 | 5_1:-52982102 | Msa0736510:CDS |
ACTGCAGATAATACCGACTT+TGG | 0.472597 | 5_1:+52982789 | None:intergenic |
CCCTCGGATTCCTTGTGCAG+TGG | 0.476144 | 5_1:+52982052 | None:intergenic |
TTGTACATCATGAGTTGAAC+CGG | 0.478057 | 5_1:+52982605 | None:intergenic |
CTCAAGAAGTGGAAATCTAC+TGG | 0.479784 | 5_1:+52982683 | None:intergenic |
GACTTAAAACATTTGGAAAA+GGG | 0.481341 | 5_1:-52981841 | Msa0736510:CDS |
TAAAGTTATACGGCCGAGCC+TGG | 0.486225 | 5_1:-52983376 | Msa0736510:CDS |
TCAACTACTTTACGTGGGTA+AGG | 0.488398 | 5_1:+52982900 | None:intergenic |
GAATGAAGGGAGAACCTTCA+AGG | 0.489688 | 5_1:+52983576 | None:intergenic |
AAGGAAGGATCTTCTTGTGT+TGG | 0.490240 | 5_1:-52981980 | Msa0736510:CDS |
GCAGTTGCTTCAGAAACCCT+TGG | 0.491941 | 5_1:-52982771 | Msa0736510:CDS |
TTACGTGGGTAAGGATGAAT+CGG | 0.497072 | 5_1:+52982909 | None:intergenic |
TGGAAATGACCATGCCTTGA+AGG | 0.504748 | 5_1:-52983590 | Msa0736510:intron |
CGGGGACAAACTTCCGGCAG+GGG | 0.506435 | 5_1:+52982731 | None:intergenic |
TTCTTCTGCTGCTACTTCGT+TGG | 0.506774 | 5_1:+52982264 | None:intergenic |
GAAGTGGAAATCTACTGGTA+TGG | 0.509677 | 5_1:+52982688 | None:intergenic |
GTATCAGAAAAGAGAGAGAT+GGG | 0.510121 | 5_1:-52981624 | Msa0736510:three_prime_UTR |
GGTATCAGAAAAGAGAGAGA+TGG | 0.519013 | 5_1:-52981625 | Msa0736510:three_prime_UTR |
CAGCACTGATGGATGAGACC+GGG | 0.531459 | 5_1:+52982712 | None:intergenic |
GCGATTTCAACTACTTTACG+TGG | 0.532217 | 5_1:+52982894 | None:intergenic |
ACCGGGGACAAACTTCCGGC+AGG | 0.532872 | 5_1:+52982729 | None:intergenic |
GGAGGGAACATCAACGTATG+AGG | 0.535905 | 5_1:-52981754 | Msa0736510:CDS |
ACTGGTATGGACAGCACTGA+TGG | 0.540181 | 5_1:+52982701 | None:intergenic |
CCCTGCCGGAAGTTTGTCCC+CGG | 0.547980 | 5_1:-52982730 | Msa0736510:CDS |
CAAATAGATGAACTGAATAC+CGG | 0.548505 | 5_1:-52982624 | Msa0736510:CDS |
CCTCAGTGGCTGTTCCAAGT+TGG | 0.552497 | 5_1:+52982857 | None:intergenic |
CTGTTTCACTTAGTGTAGTG+TGG | 0.555752 | 5_1:+52981867 | None:intergenic |
TCTGATTCAGATACCCCTGC+CGG | 0.559724 | 5_1:-52982744 | Msa0736510:CDS |
TCACGAAACAGAGAGAAAAG+TGG | 0.563691 | 5_1:-52983433 | Msa0736510:CDS |
GGCCTTCAAGCCACTGCACA+AGG | 0.565013 | 5_1:-52982062 | Msa0736510:CDS |
CCGGGGACAAACTTCCGGCA+GGG | 0.568889 | 5_1:+52982730 | None:intergenic |
TTAAAGAAAATCCTATTGGG+AGG | 0.569251 | 5_1:+52981716 | None:intergenic |
TAAAGAAAATCCTATTGGGA+GGG | 0.572184 | 5_1:+52981717 | None:intergenic |
CAAGTCTTCTTCGACATCAA+CGG | 0.581258 | 5_1:-52982185 | Msa0736510:CDS |
TGACAGTAACAGACGAGAGG+AGG | 0.581449 | 5_1:-52981772 | Msa0736510:CDS |
ACAGCACTGATGGATGAGAC+CGG | 0.582260 | 5_1:+52982711 | None:intergenic |
CAGATCAATCGAGACACTGA+TGG | 0.591725 | 5_1:-52982990 | Msa0736510:CDS |
TTCCACCTCCAAGACCAAAA+CGG | 0.592397 | 5_1:-52982935 | Msa0736510:CDS |
GCCACTGCACAAGGAATCCG+AGG | 0.593702 | 5_1:-52982053 | Msa0736510:CDS |
AAAGAATGAAATCTCCAACT+TGG | 0.596383 | 5_1:-52982871 | Msa0736510:CDS |
GACAGTAACAGACGAGAGGA+GGG | 0.596803 | 5_1:-52981771 | Msa0736510:CDS |
CGATTTCAACTACTTTACGT+GGG | 0.606836 | 5_1:+52982895 | None:intergenic |
AAGGGAGAACCTTCAAGGCA+TGG | 0.608656 | 5_1:+52983581 | None:intergenic |
GATGATTTGGACTCAAGAAG+TGG | 0.621298 | 5_1:+52982672 | None:intergenic |
ATGATGAAGAAAGCAATGAA+AGG | 0.625912 | 5_1:-52981934 | Msa0736510:CDS |
ACCACGCTGAAGTTGCTGCA+TGG | 0.627773 | 5_1:+52982141 | None:intergenic |
AGATCAATCGAGACACTGAT+GGG | 0.631943 | 5_1:-52982989 | Msa0736510:CDS |
AGAAAACAACTCTCCAAAGT+CGG | 0.638359 | 5_1:-52982802 | Msa0736510:CDS |
GTCCAAATCATCATCATCTG+AGG | 0.641348 | 5_1:-52982661 | Msa0736510:CDS |
TATCTGAATCAGAGAAACCA+AGG | 0.643676 | 5_1:+52982754 | None:intergenic |
TGTACCATATAAAAGGTGCA+TGG | 0.659379 | 5_1:-52981816 | Msa0736510:CDS |
AGCACTGATGGATGAGACCG+GGG | 0.683824 | 5_1:+52982713 | None:intergenic |
ATCTGAATCAGAGAAACCAA+GGG | 0.684620 | 5_1:+52982755 | None:intergenic |
TGGGAATGACACAACAATGG+TGG | 0.695952 | 5_1:-52982970 | Msa0736510:CDS |
CCAACTTGGAACAGCCACTG+AGG | 0.697656 | 5_1:-52982857 | Msa0736510:CDS |
GTTTGACAGTAACAGACGAG+AGG | 0.711066 | 5_1:-52981775 | Msa0736510:CDS |
GCCATGCAGCAACTTCAGCG+TGG | 0.713190 | 5_1:-52982142 | Msa0736510:CDS |
TTGTCTGAAATAGTCCACCA+AGG | 0.714861 | 5_1:+52982088 | None:intergenic |
CCACTGCACAAGGAATCCGA+GGG | 0.716142 | 5_1:-52982052 | Msa0736510:CDS |
TGATGGGAATGACACAACAA+TGG | 0.720056 | 5_1:-52982973 | Msa0736510:CDS |
AAAAGTTTGAGAGTTCGACA+AGG | 0.741043 | 5_1:+52982238 | None:intergenic |
ACAAGCGAATTAGACCTCAG+TGG | 0.788179 | 5_1:+52982843 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | ATTATTTTGTATTTTATTCT+TGG | - | chr5_1:52981864-52981883 | Msa0736510:CDS | 10.0% |
!!! | CATAGATTTTTATTATAATT+GGG | - | chr5_1:52982019-52982038 | Msa0736510:CDS | 10.0% |
!! | AAAAATAAATAAAAATCATG+TGG | - | chr5_1:52982214-52982233 | Msa0736510:CDS | 10.0% |
!!! | AAATTTATGTATACTTTTAT+AGG | - | chr5_1:52982654-52982673 | Msa0736510:CDS | 10.0% |
!! | AATTAATAAATCAGAAAATA+TGG | - | chr5_1:52982862-52982881 | Msa0736510:CDS | 10.0% |
!!! | ATAAATTTTCACTTAATATA+TGG | + | chr5_1:52983016-52983035 | None:intergenic | 10.0% |
!! | AAAAGAAATGAAAAATATAC+TGG | - | chr5_1:52981959-52981978 | Msa0736510:CDS | 15.0% |
!! | AATAAAAATCTATGCATATT+TGG | + | chr5_1:52982013-52982032 | None:intergenic | 15.0% |
!!! | GCATAGATTTTTATTATAAT+TGG | - | chr5_1:52982018-52982037 | Msa0736510:CDS | 15.0% |
!!! | TGTTTTTTTTGTATGATATT+TGG | - | chr5_1:52982241-52982260 | Msa0736510:CDS | 15.0% |
!!! | TAATTAAAAAGAGAGTATTT+TGG | - | chr5_1:52982323-52982342 | Msa0736510:intron | 15.0% |
!!! | ATTTTATATGCTTTGATTTT+TGG | - | chr5_1:52982597-52982616 | Msa0736510:CDS | 15.0% |
!! | TGTAATTAACAAAATGAAAT+AGG | + | chr5_1:52983576-52983595 | None:intergenic | 15.0% |
!! | TTCAATTTACATCTATAAAA+TGG | + | chr5_1:52984446-52984465 | None:intergenic | 15.0% |
!!! | GAAAAAAAGTTATTTTTGAG+TGG | - | chr5_1:52982068-52982087 | Msa0736510:CDS | 20.0% |
!! | ATAAATAAAAATCATGTGGA+TGG | - | chr5_1:52982218-52982237 | Msa0736510:CDS | 20.0% |
!! | GTAAAAAAAAAAATCCTTTC+TGG | - | chr5_1:52982345-52982364 | Msa0736510:intron | 20.0% |
!! | TTCACTTAATATATGGTTTA+TGG | + | chr5_1:52983009-52983028 | None:intergenic | 20.0% |
!! | AAGTGAAAATTTATGATCAA+TGG | - | chr5_1:52983022-52983041 | Msa0736510:intron | 20.0% |
!! | GATTTAAGAAATACCATTAA+AGG | + | chr5_1:52983549-52983568 | None:intergenic | 20.0% |
!! | TTAACAAAATGAAATAGGTT+AGG | + | chr5_1:52983571-52983590 | None:intergenic | 20.0% |
!!! | TCATTTTGTTAATTACAACA+AGG | - | chr5_1:52983579-52983598 | Msa0736510:intron | 20.0% |
!!! | ATTTTATTCTTGGTTTTGTG+AGG | - | chr5_1:52981874-52981893 | Msa0736510:CDS | 25.0% |
!! | AAAATATACTGGTTGTGATT+TGG | - | chr5_1:52981970-52981989 | Msa0736510:CDS | 25.0% |
! | ATGGAATGGTTCAATTATTA+AGG | - | chr5_1:52982289-52982308 | Msa0736510:CDS | 25.0% |
! | TGGAATGGTTCAATTATTAA+GGG | - | chr5_1:52982290-52982309 | Msa0736510:CDS | 25.0% |
!!! | TTGCTATTTGATCAATTTTC+AGG | - | chr5_1:52982454-52982473 | Msa0736510:intron | 25.0% |
!!! | TGCTATTTGATCAATTTTCA+GGG | - | chr5_1:52982455-52982474 | Msa0736510:intron | 25.0% |
! | CACAAATAGATAAGAATGAA+GGG | + | chr5_1:52982568-52982587 | None:intergenic | 25.0% |
! | TCACAAATAGATAAGAATGA+AGG | + | chr5_1:52982569-52982588 | None:intergenic | 25.0% |
!! | TATGTATACTTTTATAGGCA+AGG | - | chr5_1:52982659-52982678 | Msa0736510:CDS | 25.0% |
!!! | CTTGAAGCTTTAAAGTTATA+CGG | - | chr5_1:52982742-52982761 | Msa0736510:CDS | 25.0% |
!!! | AGTTTTGAATTTTCAGATCT+TGG | - | chr5_1:52982796-52982815 | Msa0736510:CDS | 25.0% |
!! | GAAAATATGGTCTAAGTTTT+TGG | - | chr5_1:52982875-52982894 | Msa0736510:CDS | 25.0% |
! | AGATCAAACATAAGAACAAA+AGG | + | chr5_1:52983797-52983816 | None:intergenic | 25.0% |
! | TCTTAATATTGTCTAGAAAC+TGG | - | chr5_1:52983814-52983833 | Msa0736510:intron | 25.0% |
!! | GTAATTCACATTATCACTTT+TGG | + | chr5_1:52984233-52984252 | None:intergenic | 25.0% |
! | GATAATGTGAATTACTTTGT+TGG | - | chr5_1:52984238-52984257 | Msa0736510:intron | 25.0% |
! | AGACTTAAAACATTTGGAAA+AGG | - | chr5_1:52984286-52984305 | Msa0736510:intron | 25.0% |
! | GACTTAAAACATTTGGAAAA+GGG | - | chr5_1:52984287-52984306 | Msa0736510:intron | 25.0% |
!! | CCTTTAAAGAAAATCCTATT+GGG | + | chr5_1:52984418-52984437 | None:intergenic | 25.0% |
!! | TCCTTTAAAGAAAATCCTAT+TGG | + | chr5_1:52984419-52984438 | None:intergenic | 25.0% |
!!! | TGTAAAAAAAAGTCTTGTTG+AGG | + | chr5_1:52984565-52984584 | None:intergenic | 25.0% |
AGAGAAAGAAGAAGATAGAT+AGG | + | chr5_1:52981582-52981601 | None:intergenic | 30.0% | |
AGTTGAAGAAAAACACAAGA+GGG | + | chr5_1:52981653-52981672 | None:intergenic | 30.0% | |
TAGTTGAAGAAAAACACAAG+AGG | + | chr5_1:52981654-52981673 | None:intergenic | 30.0% | |
! | GTGTTTTTCTTCAACTATTG+AGG | - | chr5_1:52981657-52981676 | Msa0736510:three_prime_UTR | 30.0% |
! | ACTTGTCTCTGAAGAAAATT+TGG | - | chr5_1:52981699-52981718 | Msa0736510:three_prime_UTR | 30.0% |
! | GAAGCAAAAATTTTCATCAC+TGG | - | chr5_1:52981735-52981754 | Msa0736510:exon | 30.0% |
! | TTCTGATTCTATGGAGATTT+TGG | - | chr5_1:52981759-52981778 | Msa0736510:CDS | 30.0% |
CAAATAACAACCTTAATCTC+AGG | + | chr5_1:52981902-52981921 | None:intergenic | 30.0% | |
! | CTGAGATTAAGGTTGTTATT+TGG | - | chr5_1:52981900-52981919 | Msa0736510:CDS | 30.0% |
!! | TTTTGAGTGGTTCTTGTTAA+TGG | - | chr5_1:52982081-52982100 | Msa0736510:CDS | 30.0% |
AGAATATACCTAGCTAAACA+AGG | - | chr5_1:52982127-52982146 | Msa0736510:CDS | 30.0% | |
CAAAGTTAGTTACAAGGTTA+AGG | + | chr5_1:52982153-52982172 | None:intergenic | 30.0% | |
ACTCAACAAAGTTAGTTACA+AGG | + | chr5_1:52982159-52982178 | None:intergenic | 30.0% | |
! | ATTTGGTTTATGTCTTCTTG+TGG | - | chr5_1:52982258-52982277 | Msa0736510:CDS | 30.0% |
GACTAAAATCATAACCAGAA+AGG | + | chr5_1:52982362-52982381 | None:intergenic | 30.0% | |
TGCAACAATCACAAAGAAAA+TGG | + | chr5_1:52982416-52982435 | None:intergenic | 30.0% | |
!! | AATTTTCAGGGTCAAAAAGA+AGG | - | chr5_1:52982467-52982486 | Msa0736510:intron | 30.0% |
! | CTACTTGATCAATTTTCATG+TGG | - | chr5_1:52982518-52982537 | Msa0736510:intron | 30.0% |
!! | CGTATAACTTTAAAGCTTCA+AGG | + | chr5_1:52982744-52982763 | None:intergenic | 30.0% |
AAAGATTCTTCTTGCAAAAG+AGG | - | chr5_1:52982832-52982851 | Msa0736510:CDS | 30.0% | |
!!! | TGCTCAGAAGTTTTTTTCTA+AGG | - | chr5_1:52982958-52982977 | Msa0736510:CDS | 30.0% |
!!! | ATTTTCAAGTTTCAACCTCA+AGG | + | chr5_1:52983074-52983093 | None:intergenic | 30.0% |
AAAGAATGAAATCTCCAACT+TGG | - | chr5_1:52983257-52983276 | Msa0736510:intron | 30.0% | |
CAAATAGATGAACTGAATAC+CGG | - | chr5_1:52983504-52983523 | Msa0736510:intron | 30.0% | |
TCATGATGTACAACCTTTAA+TGG | - | chr5_1:52983533-52983552 | Msa0736510:intron | 30.0% | |
AGAGACATCAAAAACTATGA+TGG | + | chr5_1:52983642-52983661 | None:intergenic | 30.0% | |
CGAAGAAAAAGAGATTCAAA+AGG | - | chr5_1:52984129-52984148 | Msa0736510:intron | 30.0% | |
GAAAAAGAGATTCAAAAGGA+AGG | - | chr5_1:52984133-52984152 | Msa0736510:intron | 30.0% | |
ATGATGAAGAAAGCAATGAA+AGG | - | chr5_1:52984194-52984213 | Msa0736510:intron | 30.0% | |
ACAGTGAGACTTAAAACATT+TGG | - | chr5_1:52984280-52984299 | Msa0736510:intron | 30.0% | |
AAGGGTTTGTACCATATAAA+AGG | - | chr5_1:52984305-52984324 | Msa0736510:intron | 30.0% | |
TAAAGAAAATCCTATTGGGA+GGG | + | chr5_1:52984414-52984433 | None:intergenic | 30.0% | |
TTAAAGAAAATCCTATTGGG+AGG | + | chr5_1:52984415-52984434 | None:intergenic | 30.0% | |
! | CCCAATAGGATTTTCTTTAA+AGG | - | chr5_1:52984415-52984434 | Msa0736510:five_prime_UTR | 30.0% |
! | TTTTCTGATACCATGTAATC+TGG | + | chr5_1:52984495-52984514 | None:intergenic | 30.0% |
ATCACTGGATTCTGATTCTA+TGG | - | chr5_1:52981750-52981769 | Msa0736510:CDS | 35.0% | |
! | GAGTCATCACAGTCTAATTT+TGG | - | chr5_1:52982175-52982194 | Msa0736510:CDS | 35.0% |
CTCTGTTTCGTGATAGTATA+TGG | + | chr5_1:52982688-52982707 | None:intergenic | 35.0% | |
ATGTTCTGTGGTGAAAATGA+AGG | + | chr5_1:52982903-52982922 | None:intergenic | 35.0% | |
! | ATTTTCACCACAGAACATGT+TGG | - | chr5_1:52982905-52982924 | Msa0736510:CDS | 35.0% |
AATTTATGATCAATGGCCCT+TGG | - | chr5_1:52983029-52983048 | Msa0736510:intron | 35.0% | |
TTTGCATTTAGCATCTCCAA+GGG | + | chr5_1:52983048-52983067 | None:intergenic | 35.0% | |
CGATTTCAACTACTTTACGT+GGG | + | chr5_1:52983236-52983255 | None:intergenic | 35.0% | |
AGAAAACAACTCTCCAAAGT+CGG | - | chr5_1:52983326-52983345 | Msa0736510:intron | 35.0% | |
ATCTGAATCAGAGAAACCAA+GGG | + | chr5_1:52983376-52983395 | None:intergenic | 35.0% | |
TATCTGAATCAGAGAAACCA+AGG | + | chr5_1:52983377-52983396 | None:intergenic | 35.0% | |
! | TTCCTCAGATGATGATGATT+TGG | + | chr5_1:52983472-52983491 | None:intergenic | 35.0% |
! | TTGTACATCATGAGTTGAAC+CGG | + | chr5_1:52983526-52983545 | None:intergenic | 35.0% |
CATGACTGATATCGTAATCA+AGG | + | chr5_1:52983758-52983777 | None:intergenic | 35.0% | |
AAAAGTTTGAGAGTTCGACA+AGG | + | chr5_1:52983893-52983912 | None:intergenic | 35.0% | |
! | TGTCGAACTCTCAAACTTTT+TGG | - | chr5_1:52983893-52983912 | Msa0736510:intron | 35.0% |
! | GTGGACTATTTCAGACAATT+CGG | - | chr5_1:52984045-52984064 | Msa0736510:intron | 35.0% |
! | TGAATGTAGATGTTTTCCCT+CGG | + | chr5_1:52984095-52984114 | None:intergenic | 35.0% |
! | TGTACCATATAAAAGGTGCA+TGG | - | chr5_1:52984312-52984331 | Msa0736510:intron | 35.0% |
GTATCAGAAAAGAGAGAGAT+GGG | - | chr5_1:52984504-52984523 | Msa0736510:five_prime_UTR | 35.0% | |
! | TTTTGACATATCTGCTGCAT+TGG | - | chr5_1:52984535-52984554 | Msa0736510:five_prime_UTR | 35.0% |
GAAAAACACAAGAGGGAAGA+GGG | + | chr5_1:52981646-52981665 | None:intergenic | 40.0% | |
AGAAAAACACAAGAGGGAAG+AGG | + | chr5_1:52981647-52981666 | None:intergenic | 40.0% | |
TTGTGAGGAACCTGAGATTA+AGG | - | chr5_1:52981889-52981908 | Msa0736510:CDS | 40.0% | |
TTATGTCTTCTTGTGGTGTG+TGG | - | chr5_1:52982265-52982284 | Msa0736510:CDS | 40.0% | |
TCACGAAACAGAGAGAAAAG+TGG | - | chr5_1:52982695-52982714 | Msa0736510:CDS | 40.0% | |
! | AATACCTTCGATTTTTCGCC+AGG | + | chr5_1:52982773-52982792 | None:intergenic | 40.0% |
GTTTGCATTTAGCATCTCCA+AGG | + | chr5_1:52983049-52983068 | None:intergenic | 40.0% | |
GCTAAATGCAAACTTCCTTG+AGG | - | chr5_1:52983056-52983075 | Msa0736510:intron | 40.0% | |
AGATCAATCGAGACACTGAT+GGG | - | chr5_1:52983139-52983158 | Msa0736510:intron | 40.0% | |
TGATGGGAATGACACAACAA+TGG | - | chr5_1:52983155-52983174 | Msa0736510:intron | 40.0% | |
TTACGTGGGTAAGGATGAAT+CGG | + | chr5_1:52983222-52983241 | None:intergenic | 40.0% | |
TCAACTACTTTACGTGGGTA+AGG | + | chr5_1:52983231-52983250 | None:intergenic | 40.0% | |
GCGATTTCAACTACTTTACG+TGG | + | chr5_1:52983237-52983256 | None:intergenic | 40.0% | |
!! | TCGCTTGTGTCGTTAGATTT+TGG | - | chr5_1:52983300-52983319 | Msa0736510:intron | 40.0% |
!! | ACTGCAGATAATACCGACTT+TGG | + | chr5_1:52983342-52983361 | None:intergenic | 40.0% |
GAAGTGGAAATCTACTGGTA+TGG | + | chr5_1:52983443-52983462 | None:intergenic | 40.0% | |
CTCAAGAAGTGGAAATCTAC+TGG | + | chr5_1:52983448-52983467 | None:intergenic | 40.0% | |
! | GATGATTTGGACTCAAGAAG+TGG | + | chr5_1:52983459-52983478 | None:intergenic | 40.0% |
GTCCAAATCATCATCATCTG+AGG | - | chr5_1:52983467-52983486 | Msa0736510:intron | 40.0% | |
TGCTAATGCAACTCCAATCA+TGG | + | chr5_1:52983679-52983698 | None:intergenic | 40.0% | |
AGGCATTATGTTGAAATCGC+AGG | + | chr5_1:52983738-52983757 | None:intergenic | 40.0% | |
TGGTTGCGACACATTCTTTA+GGG | + | chr5_1:52983847-52983866 | None:intergenic | 40.0% | |
TTGGTTGCGACACATTCTTT+AGG | + | chr5_1:52983848-52983867 | None:intergenic | 40.0% | |
CAAGTCTTCTTCGACATCAA+CGG | - | chr5_1:52983943-52983962 | Msa0736510:intron | 40.0% | |
! | TTGTCTGAAATAGTCCACCA+AGG | + | chr5_1:52984043-52984062 | None:intergenic | 40.0% |
AAGGAAGGATCTTCTTGTGT+TGG | - | chr5_1:52984148-52984167 | Msa0736510:intron | 40.0% | |
CTGTTTCACTTAGTGTAGTG+TGG | + | chr5_1:52984264-52984283 | None:intergenic | 40.0% | |
! | TCTGCCATGCACCTTTTATA+TGG | + | chr5_1:52984319-52984338 | None:intergenic | 40.0% |
GTTTCTGTTGCCAGATTACA+TGG | - | chr5_1:52984482-52984501 | Msa0736510:five_prime_UTR | 40.0% | |
GGTATCAGAAAAGAGAGAGA+TGG | - | chr5_1:52984503-52984522 | Msa0736510:five_prime_UTR | 40.0% | |
!! | GGTTAAGGCCTTGTTTAGCT+AGG | + | chr5_1:52982138-52982157 | None:intergenic | 45.0% |
TCTTCTTGTGGTGTGTGGAA+TGG | - | chr5_1:52982270-52982289 | Msa0736510:CDS | 45.0% | |
TTGTGGTGTGTGGAATGGAA+TGG | - | chr5_1:52982275-52982294 | Msa0736510:CDS | 45.0% | |
TGGAAATGACCATGCCTTGA+AGG | - | chr5_1:52982538-52982557 | Msa0736510:intron | 45.0% | |
GAATGAAGGGAGAACCTTCA+AGG | + | chr5_1:52982555-52982574 | None:intergenic | 45.0% | |
CTTTGTGCCAACATGTTCTG+TGG | + | chr5_1:52982915-52982934 | None:intergenic | 45.0% | |
CAGATCAATCGAGACACTGA+TGG | - | chr5_1:52983138-52983157 | Msa0736510:intron | 45.0% | |
TGGGAATGACACAACAATGG+TGG | - | chr5_1:52983158-52983177 | Msa0736510:intron | 45.0% | |
TTCCACCTCCAAGACCAAAA+CGG | - | chr5_1:52983193-52983212 | Msa0736510:CDS | 45.0% | |
ACAAGCGAATTAGACCTCAG+TGG | + | chr5_1:52983288-52983307 | None:intergenic | 45.0% | |
! | TTCTTCTGCTGCTACTTCGT+TGG | + | chr5_1:52983867-52983886 | None:intergenic | 45.0% |
TGATGTCGAAGAAGACTTGC+AGG | + | chr5_1:52983942-52983961 | None:intergenic | 45.0% | |
GTCTTGCAACTGTTGTTCCT+TGG | - | chr5_1:52984023-52984042 | Msa0736510:intron | 45.0% | |
TTGCAACTGTTGTTCCTTGG+TGG | - | chr5_1:52984026-52984045 | Msa0736510:intron | 45.0% | |
GTTTGACAGTAACAGACGAG+AGG | - | chr5_1:52984353-52984372 | Msa0736510:intron | 45.0% | |
CCTATTGGGAGGGAACTATA+AGG | + | chr5_1:52984404-52984423 | None:intergenic | 45.0% | |
CCTTATAGTTCCCTCCCAAT+AGG | - | chr5_1:52984401-52984420 | Msa0736510:five_prime_UTR | 45.0% | |
AAGGGAGAACCTTCAAGGCA+TGG | + | chr5_1:52982550-52982569 | None:intergenic | 50.0% | |
TAAAGTTATACGGCCGAGCC+TGG | - | chr5_1:52982752-52982771 | Msa0736510:CDS | 50.0% | |
! | CTTCGATTTTTCGCCAGGCT+CGG | + | chr5_1:52982768-52982787 | None:intergenic | 50.0% |
!!! | TTCCGTTTTGGTCTTGGAGG+TGG | + | chr5_1:52983198-52983217 | None:intergenic | 50.0% |
!! | ATCGGCTTCCGTTTTGGTCT+TGG | + | chr5_1:52983204-52983223 | None:intergenic | 50.0% |
!! | GGATGAATCGGCTTCCGTTT+TGG | + | chr5_1:52983210-52983229 | None:intergenic | 50.0% |
GCAGTTGCTTCAGAAACCCT+TGG | - | chr5_1:52983357-52983376 | Msa0736510:intron | 50.0% | |
TCTGATTCAGATACCCCTGC+CGG | - | chr5_1:52983384-52983403 | Msa0736510:CDS | 50.0% | |
!! | ACAGCACTGATGGATGAGAC+CGG | + | chr5_1:52983420-52983439 | None:intergenic | 50.0% |
! | ACTGGTATGGACAGCACTGA+TGG | + | chr5_1:52983430-52983449 | None:intergenic | 50.0% |
ACTGTCTGCGACTGCAATCA+TGG | - | chr5_1:52983611-52983630 | Msa0736510:CDS | 50.0% | |
GATGTCTCTGCATCACAACG+CGG | - | chr5_1:52983653-52983672 | Msa0736510:CDS | 50.0% | |
AGTTGCTGCATGGCAGGAAT+AGG | + | chr5_1:52983980-52983999 | None:intergenic | 50.0% | |
TTCCTTGTGCAGTGGCTTGA+AGG | + | chr5_1:52984071-52984090 | None:intergenic | 50.0% | |
TGACAGTAACAGACGAGAGG+AGG | - | chr5_1:52984356-52984375 | Msa0736510:intron | 50.0% | |
GACAGTAACAGACGAGAGGA+GGG | - | chr5_1:52984357-52984376 | Msa0736510:intron | 50.0% | |
GGAGGGAACATCAACGTATG+AGG | - | chr5_1:52984374-52984393 | Msa0736510:exon | 50.0% | |
CGAGCCTGGCGAAAAATCGA+AGG | - | chr5_1:52982766-52982785 | Msa0736510:CDS | 55.0% | |
!!! | GGCTTCCGTTTTGGTCTTGG+AGG | + | chr5_1:52983201-52983220 | None:intergenic | 55.0% |
CCTCAGTGGCTGTTCCAAGT+TGG | + | chr5_1:52983274-52983293 | None:intergenic | 55.0% | |
CCAACTTGGAACAGCCACTG+AGG | - | chr5_1:52983271-52983290 | Msa0736510:intron | 55.0% | |
TGAGACCGGGGACAAACTTC+CGG | + | chr5_1:52983406-52983425 | None:intergenic | 55.0% | |
!! | AGCACTGATGGATGAGACCG+GGG | + | chr5_1:52983418-52983437 | None:intergenic | 55.0% |
!! | CAGCACTGATGGATGAGACC+GGG | + | chr5_1:52983419-52983438 | None:intergenic | 55.0% |
CATCACAACGCGGCCATGAT+TGG | - | chr5_1:52983663-52983682 | Msa0736510:intron | 55.0% | |
ACCACGCTGAAGTTGCTGCA+TGG | + | chr5_1:52983990-52984009 | None:intergenic | 55.0% | |
CCACTGCACAAGGAATCCGA+GGG | - | chr5_1:52984076-52984095 | Msa0736510:intron | 55.0% | |
CGCTGAAGTTGCTGCATGGC+AGG | + | chr5_1:52983986-52984005 | None:intergenic | 60.0% | |
GCCATGCAGCAACTTCAGCG+TGG | - | chr5_1:52983986-52984005 | Msa0736510:intron | 60.0% | |
GGCCTTCAAGCCACTGCACA+AGG | - | chr5_1:52984066-52984085 | Msa0736510:intron | 60.0% | |
GCCACTGCACAAGGAATCCG+AGG | - | chr5_1:52984075-52984094 | Msa0736510:intron | 60.0% | |
CCCTCGGATTCCTTGTGCAG+TGG | + | chr5_1:52984079-52984098 | None:intergenic | 60.0% | |
CGGGGACAAACTTCCGGCAG+GGG | + | chr5_1:52983400-52983419 | None:intergenic | 65.0% | |
CCGGGGACAAACTTCCGGCA+GGG | + | chr5_1:52983401-52983420 | None:intergenic | 65.0% | |
CCCTGCCGGAAGTTTGTCCC+CGG | - | chr5_1:52983398-52983417 | Msa0736510:CDS | 65.0% | |
ACCGGGGACAAACTTCCGGC+AGG | + | chr5_1:52983402-52983421 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5_1 | gene | 52981566 | 52984584 | 52981566 | ID=Msa0736510;Name=Msa0736510 |
chr5_1 | mRNA | 52981566 | 52984584 | 52981566 | ID=Msa0736510-mRNA-1;Parent=Msa0736510;Name=Msa0736510-mRNA-1;_AED=0.04;_eAED=0.04;_QI=203|1|1|1|1|1|6|176|420 |
chr5_1 | exon | 52981566 | 52982320 | 52981566 | ID=Msa0736510-mRNA-1:exon:14874;Parent=Msa0736510-mRNA-1 |
chr5_1 | exon | 52982596 | 52983009 | 52982596 | ID=Msa0736510-mRNA-1:exon:14873;Parent=Msa0736510-mRNA-1 |
chr5_1 | exon | 52983171 | 52983232 | 52983171 | ID=Msa0736510-mRNA-1:exon:14872;Parent=Msa0736510-mRNA-1 |
chr5_1 | exon | 52983363 | 52983474 | 52983363 | ID=Msa0736510-mRNA-1:exon:14871;Parent=Msa0736510-mRNA-1 |
chr5_1 | exon | 52983591 | 52983674 | 52983591 | ID=Msa0736510-mRNA-1:exon:14870;Parent=Msa0736510-mRNA-1 |
chr5_1 | exon | 52984370 | 52984584 | 52984370 | ID=Msa0736510-mRNA-1:exon:14869;Parent=Msa0736510-mRNA-1 |
chr5_1 | five_prime_UTR | 52984382 | 52984584 | 52984382 | ID=Msa0736510-mRNA-1:five_prime_utr;Parent=Msa0736510-mRNA-1 |
chr5_1 | CDS | 52984370 | 52984381 | 52984370 | ID=Msa0736510-mRNA-1:cds;Parent=Msa0736510-mRNA-1 |
chr5_1 | CDS | 52983591 | 52983674 | 52983591 | ID=Msa0736510-mRNA-1:cds;Parent=Msa0736510-mRNA-1 |
chr5_1 | CDS | 52983363 | 52983474 | 52983363 | ID=Msa0736510-mRNA-1:cds;Parent=Msa0736510-mRNA-1 |
chr5_1 | CDS | 52983171 | 52983232 | 52983171 | ID=Msa0736510-mRNA-1:cds;Parent=Msa0736510-mRNA-1 |
chr5_1 | CDS | 52982596 | 52983009 | 52982596 | ID=Msa0736510-mRNA-1:cds;Parent=Msa0736510-mRNA-1 |
chr5_1 | CDS | 52981742 | 52982320 | 52981742 | ID=Msa0736510-mRNA-1:cds;Parent=Msa0736510-mRNA-1 |
chr5_1 | three_prime_UTR | 52981566 | 52981741 | 52981566 | ID=Msa0736510-mRNA-1:three_prime_utr;Parent=Msa0736510-mRNA-1 |
Gene Sequence |
Protein sequence |