AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0736510


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0736510 MtrunA17_Chr5g0433851 95.952 420 17 0 1 420 1 420 0.0 779
Msa0736510 MtrunA17_Chr3g0109791 61.189 286 103 3 4 288 19 297 1.62e-102 308
Msa0736510 MtrunA17_Chr6g0481061 37.086 453 202 14 24 418 38 465 3.09e-56 192
Msa0736510 MtrunA17_Chr8g0348391 40.000 215 94 6 28 226 49 244 1.53e-34 130
Msa0736510 MtrunA17_Chr1g0181771 55.769 104 38 1 24 127 28 123 2.60e-34 129
Msa0736510 MtrunA17_Chr7g0276421 67.619 105 32 1 23 125 6 110 1.18e-32 130
Msa0736510 MtrunA17_Chr6g0469431 55.882 102 37 2 28 129 35 128 1.95e-31 119
Msa0736510 MtrunA17_Chr4g0030281 60.000 95 34 1 174 264 134 228 1.88e-23 103
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0736510 AT5G17300.1 46.064 343 122 11 21 351 33 324 4.31e-56 190
Msa0736510 AT5G37260.1 58.537 164 59 3 23 186 16 170 1.91e-44 156
Msa0736510 AT3G10113.1 44.105 229 104 6 28 245 50 265 1.65e-37 139
Msa0736510 AT1G18330.1 41.224 245 113 7 28 245 35 275 3.49e-37 139
Msa0736510 AT1G18330.2 41.224 245 113 7 28 245 61 301 5.96e-37 139
Msa0736510 AT2G46830.1 61.798 89 34 0 20 108 1 89 2.86e-32 129
Msa0736510 AT3G09600.2 58.586 99 33 2 32 130 32 122 4.75e-32 123
Msa0736510 AT3G09600.6 58.586 99 33 2 32 130 32 122 4.75e-32 123
Msa0736510 AT3G09600.1 58.586 99 33 2 32 130 32 122 5.12e-32 123
Msa0736510 AT3G09600.7 58.586 99 33 2 32 130 32 122 5.12e-32 123
Msa0736510 AT3G09600.4 58.586 99 33 2 32 130 32 122 6.33e-32 122
Msa0736510 AT1G01060.8 64.486 107 36 1 20 124 1 107 2.49e-31 126
Msa0736510 AT1G01060.2 64.486 107 36 1 20 124 1 107 2.49e-31 126
Msa0736510 AT1G01060.3 64.486 107 36 1 20 124 1 107 2.49e-31 126
Msa0736510 AT1G01060.1 64.486 107 36 1 20 124 1 107 2.49e-31 126
Msa0736510 AT1G01060.7 64.486 107 36 1 20 124 1 107 2.49e-31 126
Msa0736510 AT1G01060.4 64.486 107 36 1 20 124 1 107 2.62e-31 126
Msa0736510 AT5G52660.2 56.122 98 35 1 28 125 57 146 1.65e-30 120
Msa0736510 AT5G52660.1 56.122 98 35 1 28 125 57 146 1.70e-30 120
Msa0736510 AT1G01520.2 42.208 154 71 3 28 181 46 181 3.17e-30 117
Msa0736510 AT1G01520.4 42.208 154 71 3 28 181 46 181 3.17e-30 117
Msa0736510 AT1G01520.3 42.208 154 71 3 28 181 46 181 3.81e-30 118
Msa0736510 AT1G01520.1 42.208 154 71 3 28 181 46 181 4.35e-30 118
Msa0736510 AT4G01280.2 56.863 102 36 2 24 125 40 133 4.66e-30 118
Msa0736510 AT4G01280.1 56.863 102 36 2 24 125 40 133 5.00e-30 118
Msa0736510 AT5G02840.4 51.304 115 47 3 32 145 37 143 5.41e-30 117
Msa0736510 AT5G02840.1 58.511 94 31 2 32 125 37 122 6.35e-30 117
Msa0736510 AT5G02840.2 58.511 94 31 2 32 125 37 122 6.35e-30 117
Msa0736510 AT5G02840.3 59.140 93 30 2 32 124 37 121 7.48e-30 117
Msa0736510 AT5G02840.5 51.304 115 47 3 32 145 37 143 9.49e-30 117
Msa0736510 AT5G17300.2 40.940 298 121 12 68 357 5 255 4.87e-24 102
Msa0736510 AT3G09600.3 53.125 64 22 2 61 124 5 60 4.77e-15 74.7
Msa0736510 AT3G09600.8 53.125 64 22 2 61 124 5 60 4.77e-15 74.7
Msa0736510 AT3G09600.5 53.125 64 22 2 61 124 5 60 5.44e-15 74.3
Msa0736510 AT3G09600.9 53.125 64 22 2 61 124 5 60 5.44e-15 74.3

Find 94 sgRNAs with CRISPR-Local

Find 182 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTGATTCTATGGAGATTT+TGG 0.134813 5_1:-52984369 Msa0736510:intron
TTCAATTTACATCTATAAAA+TGG 0.182082 5_1:+52981685 None:intergenic
ACTTGTCTCTGAAGAAAATT+TGG 0.184574 5_1:-52984429 Msa0736510:five_prime_UTR
TCATGATGTACAACCTTTAA+TGG 0.196529 5_1:-52982595 Msa0736510:intron
TCGCTTGTGTCGTTAGATTT+TGG 0.203212 5_1:-52982828 Msa0736510:CDS
ATCACTGGATTCTGATTCTA+TGG 0.223131 5_1:-52984378 Msa0736510:exon
GATTTAAGAAATACCATTAA+AGG 0.226502 5_1:+52982582 None:intergenic
CTCTGTTTCGTGATAGTATA+TGG 0.235573 5_1:+52983443 None:intergenic
GTAATTCACATTATCACTTT+TGG 0.280046 5_1:+52981898 None:intergenic
TTCCTCAGATGATGATGATT+TGG 0.286247 5_1:+52982659 None:intergenic
TGGTTGCGACACATTCTTTA+GGG 0.316667 5_1:+52982284 None:intergenic
AAGGGTTTGTACCATATAAA+AGG 0.320529 5_1:-52981823 Msa0736510:CDS
TCCTTTAAAGAAAATCCTAT+TGG 0.326367 5_1:+52981712 None:intergenic
CTTGAAGCTTTAAAGTTATA+CGG 0.328100 5_1:-52983386 Msa0736510:CDS
AGAGAAAGAAGAAGATAGAT+AGG 0.343859 5_1:+52984549 None:intergenic
GGATGAATCGGCTTCCGTTT+TGG 0.347869 5_1:+52982921 None:intergenic
TTGGTTGCGACACATTCTTT+AGG 0.358230 5_1:+52982283 None:intergenic
ACAGTGAGACTTAAAACATT+TGG 0.363877 5_1:-52981848 Msa0736510:CDS
CCTTATAGTTCCCTCCCAAT+AGG 0.373169 5_1:-52981727 Msa0736510:exon
CGCTGAAGTTGCTGCATGGC+AGG 0.384263 5_1:+52982145 None:intergenic
CCTATTGGGAGGGAACTATA+AGG 0.389437 5_1:+52981727 None:intergenic
AGACTTAAAACATTTGGAAA+AGG 0.403830 5_1:-52981842 Msa0736510:CDS
TGATGTCGAAGAAGACTTGC+AGG 0.408269 5_1:+52982189 None:intergenic
CCTTTAAAGAAAATCCTATT+GGG 0.410008 5_1:+52981713 None:intergenic
TTCCTTGTGCAGTGGCTTGA+AGG 0.410625 5_1:+52982060 None:intergenic
TGAGACCGGGGACAAACTTC+CGG 0.418000 5_1:+52982725 None:intergenic
GTGGACTATTTCAGACAATT+CGG 0.423011 5_1:-52982083 Msa0736510:CDS
CGTATAACTTTAAAGCTTCA+AGG 0.424014 5_1:+52983387 None:intergenic
GTCTTGCAACTGTTGTTCCT+TGG 0.430710 5_1:-52982105 Msa0736510:CDS
GTTTCTGTTGCCAGATTACA+TGG 0.434006 5_1:-52981646 Msa0736510:three_prime_UTR
AGTTGCTGCATGGCAGGAAT+AGG 0.442858 5_1:+52982151 None:intergenic
GATAATGTGAATTACTTTGT+TGG 0.443037 5_1:-52981890 Msa0736510:CDS
TTGCAACTGTTGTTCCTTGG+TGG 0.457649 5_1:-52982102 Msa0736510:CDS
ACTGCAGATAATACCGACTT+TGG 0.472597 5_1:+52982789 None:intergenic
CCCTCGGATTCCTTGTGCAG+TGG 0.476144 5_1:+52982052 None:intergenic
TTGTACATCATGAGTTGAAC+CGG 0.478057 5_1:+52982605 None:intergenic
CTCAAGAAGTGGAAATCTAC+TGG 0.479784 5_1:+52982683 None:intergenic
GACTTAAAACATTTGGAAAA+GGG 0.481341 5_1:-52981841 Msa0736510:CDS
TAAAGTTATACGGCCGAGCC+TGG 0.486225 5_1:-52983376 Msa0736510:CDS
TCAACTACTTTACGTGGGTA+AGG 0.488398 5_1:+52982900 None:intergenic
GAATGAAGGGAGAACCTTCA+AGG 0.489688 5_1:+52983576 None:intergenic
AAGGAAGGATCTTCTTGTGT+TGG 0.490240 5_1:-52981980 Msa0736510:CDS
GCAGTTGCTTCAGAAACCCT+TGG 0.491941 5_1:-52982771 Msa0736510:CDS
TTACGTGGGTAAGGATGAAT+CGG 0.497072 5_1:+52982909 None:intergenic
TGGAAATGACCATGCCTTGA+AGG 0.504748 5_1:-52983590 Msa0736510:intron
CGGGGACAAACTTCCGGCAG+GGG 0.506435 5_1:+52982731 None:intergenic
TTCTTCTGCTGCTACTTCGT+TGG 0.506774 5_1:+52982264 None:intergenic
GAAGTGGAAATCTACTGGTA+TGG 0.509677 5_1:+52982688 None:intergenic
GTATCAGAAAAGAGAGAGAT+GGG 0.510121 5_1:-52981624 Msa0736510:three_prime_UTR
GGTATCAGAAAAGAGAGAGA+TGG 0.519013 5_1:-52981625 Msa0736510:three_prime_UTR
CAGCACTGATGGATGAGACC+GGG 0.531459 5_1:+52982712 None:intergenic
GCGATTTCAACTACTTTACG+TGG 0.532217 5_1:+52982894 None:intergenic
ACCGGGGACAAACTTCCGGC+AGG 0.532872 5_1:+52982729 None:intergenic
GGAGGGAACATCAACGTATG+AGG 0.535905 5_1:-52981754 Msa0736510:CDS
ACTGGTATGGACAGCACTGA+TGG 0.540181 5_1:+52982701 None:intergenic
CCCTGCCGGAAGTTTGTCCC+CGG 0.547980 5_1:-52982730 Msa0736510:CDS
CAAATAGATGAACTGAATAC+CGG 0.548505 5_1:-52982624 Msa0736510:CDS
CCTCAGTGGCTGTTCCAAGT+TGG 0.552497 5_1:+52982857 None:intergenic
CTGTTTCACTTAGTGTAGTG+TGG 0.555752 5_1:+52981867 None:intergenic
TCTGATTCAGATACCCCTGC+CGG 0.559724 5_1:-52982744 Msa0736510:CDS
TCACGAAACAGAGAGAAAAG+TGG 0.563691 5_1:-52983433 Msa0736510:CDS
GGCCTTCAAGCCACTGCACA+AGG 0.565013 5_1:-52982062 Msa0736510:CDS
CCGGGGACAAACTTCCGGCA+GGG 0.568889 5_1:+52982730 None:intergenic
TTAAAGAAAATCCTATTGGG+AGG 0.569251 5_1:+52981716 None:intergenic
TAAAGAAAATCCTATTGGGA+GGG 0.572184 5_1:+52981717 None:intergenic
CAAGTCTTCTTCGACATCAA+CGG 0.581258 5_1:-52982185 Msa0736510:CDS
TGACAGTAACAGACGAGAGG+AGG 0.581449 5_1:-52981772 Msa0736510:CDS
ACAGCACTGATGGATGAGAC+CGG 0.582260 5_1:+52982711 None:intergenic
CAGATCAATCGAGACACTGA+TGG 0.591725 5_1:-52982990 Msa0736510:CDS
TTCCACCTCCAAGACCAAAA+CGG 0.592397 5_1:-52982935 Msa0736510:CDS
GCCACTGCACAAGGAATCCG+AGG 0.593702 5_1:-52982053 Msa0736510:CDS
AAAGAATGAAATCTCCAACT+TGG 0.596383 5_1:-52982871 Msa0736510:CDS
GACAGTAACAGACGAGAGGA+GGG 0.596803 5_1:-52981771 Msa0736510:CDS
CGATTTCAACTACTTTACGT+GGG 0.606836 5_1:+52982895 None:intergenic
AAGGGAGAACCTTCAAGGCA+TGG 0.608656 5_1:+52983581 None:intergenic
GATGATTTGGACTCAAGAAG+TGG 0.621298 5_1:+52982672 None:intergenic
ATGATGAAGAAAGCAATGAA+AGG 0.625912 5_1:-52981934 Msa0736510:CDS
ACCACGCTGAAGTTGCTGCA+TGG 0.627773 5_1:+52982141 None:intergenic
AGATCAATCGAGACACTGAT+GGG 0.631943 5_1:-52982989 Msa0736510:CDS
AGAAAACAACTCTCCAAAGT+CGG 0.638359 5_1:-52982802 Msa0736510:CDS
GTCCAAATCATCATCATCTG+AGG 0.641348 5_1:-52982661 Msa0736510:CDS
TATCTGAATCAGAGAAACCA+AGG 0.643676 5_1:+52982754 None:intergenic
TGTACCATATAAAAGGTGCA+TGG 0.659379 5_1:-52981816 Msa0736510:CDS
AGCACTGATGGATGAGACCG+GGG 0.683824 5_1:+52982713 None:intergenic
ATCTGAATCAGAGAAACCAA+GGG 0.684620 5_1:+52982755 None:intergenic
TGGGAATGACACAACAATGG+TGG 0.695952 5_1:-52982970 Msa0736510:CDS
CCAACTTGGAACAGCCACTG+AGG 0.697656 5_1:-52982857 Msa0736510:CDS
GTTTGACAGTAACAGACGAG+AGG 0.711066 5_1:-52981775 Msa0736510:CDS
GCCATGCAGCAACTTCAGCG+TGG 0.713190 5_1:-52982142 Msa0736510:CDS
TTGTCTGAAATAGTCCACCA+AGG 0.714861 5_1:+52982088 None:intergenic
CCACTGCACAAGGAATCCGA+GGG 0.716142 5_1:-52982052 Msa0736510:CDS
TGATGGGAATGACACAACAA+TGG 0.720056 5_1:-52982973 Msa0736510:CDS
AAAAGTTTGAGAGTTCGACA+AGG 0.741043 5_1:+52982238 None:intergenic
ACAAGCGAATTAGACCTCAG+TGG 0.788179 5_1:+52982843 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTATTTTGTATTTTATTCT+TGG - chr5_1:52981864-52981883 Msa0736510:CDS 10.0%
!!! CATAGATTTTTATTATAATT+GGG - chr5_1:52982019-52982038 Msa0736510:CDS 10.0%
!! AAAAATAAATAAAAATCATG+TGG - chr5_1:52982214-52982233 Msa0736510:CDS 10.0%
!!! AAATTTATGTATACTTTTAT+AGG - chr5_1:52982654-52982673 Msa0736510:CDS 10.0%
!! AATTAATAAATCAGAAAATA+TGG - chr5_1:52982862-52982881 Msa0736510:CDS 10.0%
!!! ATAAATTTTCACTTAATATA+TGG + chr5_1:52983016-52983035 None:intergenic 10.0%
!! AAAAGAAATGAAAAATATAC+TGG - chr5_1:52981959-52981978 Msa0736510:CDS 15.0%
!! AATAAAAATCTATGCATATT+TGG + chr5_1:52982013-52982032 None:intergenic 15.0%
!!! GCATAGATTTTTATTATAAT+TGG - chr5_1:52982018-52982037 Msa0736510:CDS 15.0%
!!! TGTTTTTTTTGTATGATATT+TGG - chr5_1:52982241-52982260 Msa0736510:CDS 15.0%
!!! TAATTAAAAAGAGAGTATTT+TGG - chr5_1:52982323-52982342 Msa0736510:intron 15.0%
!!! ATTTTATATGCTTTGATTTT+TGG - chr5_1:52982597-52982616 Msa0736510:CDS 15.0%
!! TGTAATTAACAAAATGAAAT+AGG + chr5_1:52983576-52983595 None:intergenic 15.0%
!! TTCAATTTACATCTATAAAA+TGG + chr5_1:52984446-52984465 None:intergenic 15.0%
!!! GAAAAAAAGTTATTTTTGAG+TGG - chr5_1:52982068-52982087 Msa0736510:CDS 20.0%
!! ATAAATAAAAATCATGTGGA+TGG - chr5_1:52982218-52982237 Msa0736510:CDS 20.0%
!! GTAAAAAAAAAAATCCTTTC+TGG - chr5_1:52982345-52982364 Msa0736510:intron 20.0%
!! TTCACTTAATATATGGTTTA+TGG + chr5_1:52983009-52983028 None:intergenic 20.0%
!! AAGTGAAAATTTATGATCAA+TGG - chr5_1:52983022-52983041 Msa0736510:intron 20.0%
!! GATTTAAGAAATACCATTAA+AGG + chr5_1:52983549-52983568 None:intergenic 20.0%
!! TTAACAAAATGAAATAGGTT+AGG + chr5_1:52983571-52983590 None:intergenic 20.0%
!!! TCATTTTGTTAATTACAACA+AGG - chr5_1:52983579-52983598 Msa0736510:intron 20.0%
!!! ATTTTATTCTTGGTTTTGTG+AGG - chr5_1:52981874-52981893 Msa0736510:CDS 25.0%
!! AAAATATACTGGTTGTGATT+TGG - chr5_1:52981970-52981989 Msa0736510:CDS 25.0%
! ATGGAATGGTTCAATTATTA+AGG - chr5_1:52982289-52982308 Msa0736510:CDS 25.0%
! TGGAATGGTTCAATTATTAA+GGG - chr5_1:52982290-52982309 Msa0736510:CDS 25.0%
!!! TTGCTATTTGATCAATTTTC+AGG - chr5_1:52982454-52982473 Msa0736510:intron 25.0%
!!! TGCTATTTGATCAATTTTCA+GGG - chr5_1:52982455-52982474 Msa0736510:intron 25.0%
! CACAAATAGATAAGAATGAA+GGG + chr5_1:52982568-52982587 None:intergenic 25.0%
! TCACAAATAGATAAGAATGA+AGG + chr5_1:52982569-52982588 None:intergenic 25.0%
!! TATGTATACTTTTATAGGCA+AGG - chr5_1:52982659-52982678 Msa0736510:CDS 25.0%
!!! CTTGAAGCTTTAAAGTTATA+CGG - chr5_1:52982742-52982761 Msa0736510:CDS 25.0%
!!! AGTTTTGAATTTTCAGATCT+TGG - chr5_1:52982796-52982815 Msa0736510:CDS 25.0%
!! GAAAATATGGTCTAAGTTTT+TGG - chr5_1:52982875-52982894 Msa0736510:CDS 25.0%
! AGATCAAACATAAGAACAAA+AGG + chr5_1:52983797-52983816 None:intergenic 25.0%
! TCTTAATATTGTCTAGAAAC+TGG - chr5_1:52983814-52983833 Msa0736510:intron 25.0%
!! GTAATTCACATTATCACTTT+TGG + chr5_1:52984233-52984252 None:intergenic 25.0%
! GATAATGTGAATTACTTTGT+TGG - chr5_1:52984238-52984257 Msa0736510:intron 25.0%
! AGACTTAAAACATTTGGAAA+AGG - chr5_1:52984286-52984305 Msa0736510:intron 25.0%
! GACTTAAAACATTTGGAAAA+GGG - chr5_1:52984287-52984306 Msa0736510:intron 25.0%
!! CCTTTAAAGAAAATCCTATT+GGG + chr5_1:52984418-52984437 None:intergenic 25.0%
!! TCCTTTAAAGAAAATCCTAT+TGG + chr5_1:52984419-52984438 None:intergenic 25.0%
!!! TGTAAAAAAAAGTCTTGTTG+AGG + chr5_1:52984565-52984584 None:intergenic 25.0%
AGAGAAAGAAGAAGATAGAT+AGG + chr5_1:52981582-52981601 None:intergenic 30.0%
AGTTGAAGAAAAACACAAGA+GGG + chr5_1:52981653-52981672 None:intergenic 30.0%
TAGTTGAAGAAAAACACAAG+AGG + chr5_1:52981654-52981673 None:intergenic 30.0%
! GTGTTTTTCTTCAACTATTG+AGG - chr5_1:52981657-52981676 Msa0736510:three_prime_UTR 30.0%
! ACTTGTCTCTGAAGAAAATT+TGG - chr5_1:52981699-52981718 Msa0736510:three_prime_UTR 30.0%
! GAAGCAAAAATTTTCATCAC+TGG - chr5_1:52981735-52981754 Msa0736510:exon 30.0%
! TTCTGATTCTATGGAGATTT+TGG - chr5_1:52981759-52981778 Msa0736510:CDS 30.0%
CAAATAACAACCTTAATCTC+AGG + chr5_1:52981902-52981921 None:intergenic 30.0%
! CTGAGATTAAGGTTGTTATT+TGG - chr5_1:52981900-52981919 Msa0736510:CDS 30.0%
!! TTTTGAGTGGTTCTTGTTAA+TGG - chr5_1:52982081-52982100 Msa0736510:CDS 30.0%
AGAATATACCTAGCTAAACA+AGG - chr5_1:52982127-52982146 Msa0736510:CDS 30.0%
CAAAGTTAGTTACAAGGTTA+AGG + chr5_1:52982153-52982172 None:intergenic 30.0%
ACTCAACAAAGTTAGTTACA+AGG + chr5_1:52982159-52982178 None:intergenic 30.0%
! ATTTGGTTTATGTCTTCTTG+TGG - chr5_1:52982258-52982277 Msa0736510:CDS 30.0%
GACTAAAATCATAACCAGAA+AGG + chr5_1:52982362-52982381 None:intergenic 30.0%
TGCAACAATCACAAAGAAAA+TGG + chr5_1:52982416-52982435 None:intergenic 30.0%
!! AATTTTCAGGGTCAAAAAGA+AGG - chr5_1:52982467-52982486 Msa0736510:intron 30.0%
! CTACTTGATCAATTTTCATG+TGG - chr5_1:52982518-52982537 Msa0736510:intron 30.0%
!! CGTATAACTTTAAAGCTTCA+AGG + chr5_1:52982744-52982763 None:intergenic 30.0%
AAAGATTCTTCTTGCAAAAG+AGG - chr5_1:52982832-52982851 Msa0736510:CDS 30.0%
!!! TGCTCAGAAGTTTTTTTCTA+AGG - chr5_1:52982958-52982977 Msa0736510:CDS 30.0%
!!! ATTTTCAAGTTTCAACCTCA+AGG + chr5_1:52983074-52983093 None:intergenic 30.0%
AAAGAATGAAATCTCCAACT+TGG - chr5_1:52983257-52983276 Msa0736510:intron 30.0%
CAAATAGATGAACTGAATAC+CGG - chr5_1:52983504-52983523 Msa0736510:intron 30.0%
TCATGATGTACAACCTTTAA+TGG - chr5_1:52983533-52983552 Msa0736510:intron 30.0%
AGAGACATCAAAAACTATGA+TGG + chr5_1:52983642-52983661 None:intergenic 30.0%
CGAAGAAAAAGAGATTCAAA+AGG - chr5_1:52984129-52984148 Msa0736510:intron 30.0%
GAAAAAGAGATTCAAAAGGA+AGG - chr5_1:52984133-52984152 Msa0736510:intron 30.0%
ATGATGAAGAAAGCAATGAA+AGG - chr5_1:52984194-52984213 Msa0736510:intron 30.0%
ACAGTGAGACTTAAAACATT+TGG - chr5_1:52984280-52984299 Msa0736510:intron 30.0%
AAGGGTTTGTACCATATAAA+AGG - chr5_1:52984305-52984324 Msa0736510:intron 30.0%
TAAAGAAAATCCTATTGGGA+GGG + chr5_1:52984414-52984433 None:intergenic 30.0%
TTAAAGAAAATCCTATTGGG+AGG + chr5_1:52984415-52984434 None:intergenic 30.0%
! CCCAATAGGATTTTCTTTAA+AGG - chr5_1:52984415-52984434 Msa0736510:five_prime_UTR 30.0%
! TTTTCTGATACCATGTAATC+TGG + chr5_1:52984495-52984514 None:intergenic 30.0%
ATCACTGGATTCTGATTCTA+TGG - chr5_1:52981750-52981769 Msa0736510:CDS 35.0%
! GAGTCATCACAGTCTAATTT+TGG - chr5_1:52982175-52982194 Msa0736510:CDS 35.0%
CTCTGTTTCGTGATAGTATA+TGG + chr5_1:52982688-52982707 None:intergenic 35.0%
ATGTTCTGTGGTGAAAATGA+AGG + chr5_1:52982903-52982922 None:intergenic 35.0%
! ATTTTCACCACAGAACATGT+TGG - chr5_1:52982905-52982924 Msa0736510:CDS 35.0%
AATTTATGATCAATGGCCCT+TGG - chr5_1:52983029-52983048 Msa0736510:intron 35.0%
TTTGCATTTAGCATCTCCAA+GGG + chr5_1:52983048-52983067 None:intergenic 35.0%
CGATTTCAACTACTTTACGT+GGG + chr5_1:52983236-52983255 None:intergenic 35.0%
AGAAAACAACTCTCCAAAGT+CGG - chr5_1:52983326-52983345 Msa0736510:intron 35.0%
ATCTGAATCAGAGAAACCAA+GGG + chr5_1:52983376-52983395 None:intergenic 35.0%
TATCTGAATCAGAGAAACCA+AGG + chr5_1:52983377-52983396 None:intergenic 35.0%
! TTCCTCAGATGATGATGATT+TGG + chr5_1:52983472-52983491 None:intergenic 35.0%
! TTGTACATCATGAGTTGAAC+CGG + chr5_1:52983526-52983545 None:intergenic 35.0%
CATGACTGATATCGTAATCA+AGG + chr5_1:52983758-52983777 None:intergenic 35.0%
AAAAGTTTGAGAGTTCGACA+AGG + chr5_1:52983893-52983912 None:intergenic 35.0%
! TGTCGAACTCTCAAACTTTT+TGG - chr5_1:52983893-52983912 Msa0736510:intron 35.0%
! GTGGACTATTTCAGACAATT+CGG - chr5_1:52984045-52984064 Msa0736510:intron 35.0%
! TGAATGTAGATGTTTTCCCT+CGG + chr5_1:52984095-52984114 None:intergenic 35.0%
! TGTACCATATAAAAGGTGCA+TGG - chr5_1:52984312-52984331 Msa0736510:intron 35.0%
GTATCAGAAAAGAGAGAGAT+GGG - chr5_1:52984504-52984523 Msa0736510:five_prime_UTR 35.0%
! TTTTGACATATCTGCTGCAT+TGG - chr5_1:52984535-52984554 Msa0736510:five_prime_UTR 35.0%
GAAAAACACAAGAGGGAAGA+GGG + chr5_1:52981646-52981665 None:intergenic 40.0%
AGAAAAACACAAGAGGGAAG+AGG + chr5_1:52981647-52981666 None:intergenic 40.0%
TTGTGAGGAACCTGAGATTA+AGG - chr5_1:52981889-52981908 Msa0736510:CDS 40.0%
TTATGTCTTCTTGTGGTGTG+TGG - chr5_1:52982265-52982284 Msa0736510:CDS 40.0%
TCACGAAACAGAGAGAAAAG+TGG - chr5_1:52982695-52982714 Msa0736510:CDS 40.0%
! AATACCTTCGATTTTTCGCC+AGG + chr5_1:52982773-52982792 None:intergenic 40.0%
GTTTGCATTTAGCATCTCCA+AGG + chr5_1:52983049-52983068 None:intergenic 40.0%
GCTAAATGCAAACTTCCTTG+AGG - chr5_1:52983056-52983075 Msa0736510:intron 40.0%
AGATCAATCGAGACACTGAT+GGG - chr5_1:52983139-52983158 Msa0736510:intron 40.0%
TGATGGGAATGACACAACAA+TGG - chr5_1:52983155-52983174 Msa0736510:intron 40.0%
TTACGTGGGTAAGGATGAAT+CGG + chr5_1:52983222-52983241 None:intergenic 40.0%
TCAACTACTTTACGTGGGTA+AGG + chr5_1:52983231-52983250 None:intergenic 40.0%
GCGATTTCAACTACTTTACG+TGG + chr5_1:52983237-52983256 None:intergenic 40.0%
!! TCGCTTGTGTCGTTAGATTT+TGG - chr5_1:52983300-52983319 Msa0736510:intron 40.0%
!! ACTGCAGATAATACCGACTT+TGG + chr5_1:52983342-52983361 None:intergenic 40.0%
GAAGTGGAAATCTACTGGTA+TGG + chr5_1:52983443-52983462 None:intergenic 40.0%
CTCAAGAAGTGGAAATCTAC+TGG + chr5_1:52983448-52983467 None:intergenic 40.0%
! GATGATTTGGACTCAAGAAG+TGG + chr5_1:52983459-52983478 None:intergenic 40.0%
GTCCAAATCATCATCATCTG+AGG - chr5_1:52983467-52983486 Msa0736510:intron 40.0%
TGCTAATGCAACTCCAATCA+TGG + chr5_1:52983679-52983698 None:intergenic 40.0%
AGGCATTATGTTGAAATCGC+AGG + chr5_1:52983738-52983757 None:intergenic 40.0%
TGGTTGCGACACATTCTTTA+GGG + chr5_1:52983847-52983866 None:intergenic 40.0%
TTGGTTGCGACACATTCTTT+AGG + chr5_1:52983848-52983867 None:intergenic 40.0%
CAAGTCTTCTTCGACATCAA+CGG - chr5_1:52983943-52983962 Msa0736510:intron 40.0%
! TTGTCTGAAATAGTCCACCA+AGG + chr5_1:52984043-52984062 None:intergenic 40.0%
AAGGAAGGATCTTCTTGTGT+TGG - chr5_1:52984148-52984167 Msa0736510:intron 40.0%
CTGTTTCACTTAGTGTAGTG+TGG + chr5_1:52984264-52984283 None:intergenic 40.0%
! TCTGCCATGCACCTTTTATA+TGG + chr5_1:52984319-52984338 None:intergenic 40.0%
GTTTCTGTTGCCAGATTACA+TGG - chr5_1:52984482-52984501 Msa0736510:five_prime_UTR 40.0%
GGTATCAGAAAAGAGAGAGA+TGG - chr5_1:52984503-52984522 Msa0736510:five_prime_UTR 40.0%
!! GGTTAAGGCCTTGTTTAGCT+AGG + chr5_1:52982138-52982157 None:intergenic 45.0%
TCTTCTTGTGGTGTGTGGAA+TGG - chr5_1:52982270-52982289 Msa0736510:CDS 45.0%
TTGTGGTGTGTGGAATGGAA+TGG - chr5_1:52982275-52982294 Msa0736510:CDS 45.0%
TGGAAATGACCATGCCTTGA+AGG - chr5_1:52982538-52982557 Msa0736510:intron 45.0%
GAATGAAGGGAGAACCTTCA+AGG + chr5_1:52982555-52982574 None:intergenic 45.0%
CTTTGTGCCAACATGTTCTG+TGG + chr5_1:52982915-52982934 None:intergenic 45.0%
CAGATCAATCGAGACACTGA+TGG - chr5_1:52983138-52983157 Msa0736510:intron 45.0%
TGGGAATGACACAACAATGG+TGG - chr5_1:52983158-52983177 Msa0736510:intron 45.0%
TTCCACCTCCAAGACCAAAA+CGG - chr5_1:52983193-52983212 Msa0736510:CDS 45.0%
ACAAGCGAATTAGACCTCAG+TGG + chr5_1:52983288-52983307 None:intergenic 45.0%
! TTCTTCTGCTGCTACTTCGT+TGG + chr5_1:52983867-52983886 None:intergenic 45.0%
TGATGTCGAAGAAGACTTGC+AGG + chr5_1:52983942-52983961 None:intergenic 45.0%
GTCTTGCAACTGTTGTTCCT+TGG - chr5_1:52984023-52984042 Msa0736510:intron 45.0%
TTGCAACTGTTGTTCCTTGG+TGG - chr5_1:52984026-52984045 Msa0736510:intron 45.0%
GTTTGACAGTAACAGACGAG+AGG - chr5_1:52984353-52984372 Msa0736510:intron 45.0%
CCTATTGGGAGGGAACTATA+AGG + chr5_1:52984404-52984423 None:intergenic 45.0%
CCTTATAGTTCCCTCCCAAT+AGG - chr5_1:52984401-52984420 Msa0736510:five_prime_UTR 45.0%
AAGGGAGAACCTTCAAGGCA+TGG + chr5_1:52982550-52982569 None:intergenic 50.0%
TAAAGTTATACGGCCGAGCC+TGG - chr5_1:52982752-52982771 Msa0736510:CDS 50.0%
! CTTCGATTTTTCGCCAGGCT+CGG + chr5_1:52982768-52982787 None:intergenic 50.0%
!!! TTCCGTTTTGGTCTTGGAGG+TGG + chr5_1:52983198-52983217 None:intergenic 50.0%
!! ATCGGCTTCCGTTTTGGTCT+TGG + chr5_1:52983204-52983223 None:intergenic 50.0%
!! GGATGAATCGGCTTCCGTTT+TGG + chr5_1:52983210-52983229 None:intergenic 50.0%
GCAGTTGCTTCAGAAACCCT+TGG - chr5_1:52983357-52983376 Msa0736510:intron 50.0%
TCTGATTCAGATACCCCTGC+CGG - chr5_1:52983384-52983403 Msa0736510:CDS 50.0%
!! ACAGCACTGATGGATGAGAC+CGG + chr5_1:52983420-52983439 None:intergenic 50.0%
! ACTGGTATGGACAGCACTGA+TGG + chr5_1:52983430-52983449 None:intergenic 50.0%
ACTGTCTGCGACTGCAATCA+TGG - chr5_1:52983611-52983630 Msa0736510:CDS 50.0%
GATGTCTCTGCATCACAACG+CGG - chr5_1:52983653-52983672 Msa0736510:CDS 50.0%
AGTTGCTGCATGGCAGGAAT+AGG + chr5_1:52983980-52983999 None:intergenic 50.0%
TTCCTTGTGCAGTGGCTTGA+AGG + chr5_1:52984071-52984090 None:intergenic 50.0%
TGACAGTAACAGACGAGAGG+AGG - chr5_1:52984356-52984375 Msa0736510:intron 50.0%
GACAGTAACAGACGAGAGGA+GGG - chr5_1:52984357-52984376 Msa0736510:intron 50.0%
GGAGGGAACATCAACGTATG+AGG - chr5_1:52984374-52984393 Msa0736510:exon 50.0%
CGAGCCTGGCGAAAAATCGA+AGG - chr5_1:52982766-52982785 Msa0736510:CDS 55.0%
!!! GGCTTCCGTTTTGGTCTTGG+AGG + chr5_1:52983201-52983220 None:intergenic 55.0%
CCTCAGTGGCTGTTCCAAGT+TGG + chr5_1:52983274-52983293 None:intergenic 55.0%
CCAACTTGGAACAGCCACTG+AGG - chr5_1:52983271-52983290 Msa0736510:intron 55.0%
TGAGACCGGGGACAAACTTC+CGG + chr5_1:52983406-52983425 None:intergenic 55.0%
!! AGCACTGATGGATGAGACCG+GGG + chr5_1:52983418-52983437 None:intergenic 55.0%
!! CAGCACTGATGGATGAGACC+GGG + chr5_1:52983419-52983438 None:intergenic 55.0%
CATCACAACGCGGCCATGAT+TGG - chr5_1:52983663-52983682 Msa0736510:intron 55.0%
ACCACGCTGAAGTTGCTGCA+TGG + chr5_1:52983990-52984009 None:intergenic 55.0%
CCACTGCACAAGGAATCCGA+GGG - chr5_1:52984076-52984095 Msa0736510:intron 55.0%
CGCTGAAGTTGCTGCATGGC+AGG + chr5_1:52983986-52984005 None:intergenic 60.0%
GCCATGCAGCAACTTCAGCG+TGG - chr5_1:52983986-52984005 Msa0736510:intron 60.0%
GGCCTTCAAGCCACTGCACA+AGG - chr5_1:52984066-52984085 Msa0736510:intron 60.0%
GCCACTGCACAAGGAATCCG+AGG - chr5_1:52984075-52984094 Msa0736510:intron 60.0%
CCCTCGGATTCCTTGTGCAG+TGG + chr5_1:52984079-52984098 None:intergenic 60.0%
CGGGGACAAACTTCCGGCAG+GGG + chr5_1:52983400-52983419 None:intergenic 65.0%
CCGGGGACAAACTTCCGGCA+GGG + chr5_1:52983401-52983420 None:intergenic 65.0%
CCCTGCCGGAAGTTTGTCCC+CGG - chr5_1:52983398-52983417 Msa0736510:CDS 65.0%
ACCGGGGACAAACTTCCGGC+AGG + chr5_1:52983402-52983421 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 52981566 52984584 52981566 ID=Msa0736510;Name=Msa0736510
chr5_1 mRNA 52981566 52984584 52981566 ID=Msa0736510-mRNA-1;Parent=Msa0736510;Name=Msa0736510-mRNA-1;_AED=0.04;_eAED=0.04;_QI=203|1|1|1|1|1|6|176|420
chr5_1 exon 52981566 52982320 52981566 ID=Msa0736510-mRNA-1:exon:14874;Parent=Msa0736510-mRNA-1
chr5_1 exon 52982596 52983009 52982596 ID=Msa0736510-mRNA-1:exon:14873;Parent=Msa0736510-mRNA-1
chr5_1 exon 52983171 52983232 52983171 ID=Msa0736510-mRNA-1:exon:14872;Parent=Msa0736510-mRNA-1
chr5_1 exon 52983363 52983474 52983363 ID=Msa0736510-mRNA-1:exon:14871;Parent=Msa0736510-mRNA-1
chr5_1 exon 52983591 52983674 52983591 ID=Msa0736510-mRNA-1:exon:14870;Parent=Msa0736510-mRNA-1
chr5_1 exon 52984370 52984584 52984370 ID=Msa0736510-mRNA-1:exon:14869;Parent=Msa0736510-mRNA-1
chr5_1 five_prime_UTR 52984382 52984584 52984382 ID=Msa0736510-mRNA-1:five_prime_utr;Parent=Msa0736510-mRNA-1
chr5_1 CDS 52984370 52984381 52984370 ID=Msa0736510-mRNA-1:cds;Parent=Msa0736510-mRNA-1
chr5_1 CDS 52983591 52983674 52983591 ID=Msa0736510-mRNA-1:cds;Parent=Msa0736510-mRNA-1
chr5_1 CDS 52983363 52983474 52983363 ID=Msa0736510-mRNA-1:cds;Parent=Msa0736510-mRNA-1
chr5_1 CDS 52983171 52983232 52983171 ID=Msa0736510-mRNA-1:cds;Parent=Msa0736510-mRNA-1
chr5_1 CDS 52982596 52983009 52982596 ID=Msa0736510-mRNA-1:cds;Parent=Msa0736510-mRNA-1
chr5_1 CDS 52981742 52982320 52981742 ID=Msa0736510-mRNA-1:cds;Parent=Msa0736510-mRNA-1
chr5_1 three_prime_UTR 52981566 52981741 52981566 ID=Msa0736510-mRNA-1:three_prime_utr;Parent=Msa0736510-mRNA-1
Gene Sequence

>Msa0736510

ATGGAGATTTTGGGTCAAAAAGAAGGAATGCATTCTGTTGTACATGTACAAAAACTACTTGATCAATTTTCATGTGGAAATGACCATGCCTTGAAGGCAAGGAAACCATATACTATCACGAAACAGAGAGAAAAGTGGACAGATGAAGAACATAAGAAGTTCCTTGAAGCTTTAAAGTTATACGGCCGAGCCTGGCGAAAAATCGAAGAACATGTTGGCACAAAGACTGCTGTGCAGATTCGAAGTCATGCTCAGAAGTTTTTTTCTAAGATCAATCGAGACACTGATGGGAATGACACAACAATGGTGGAGACAATTGAAATTCCACCTCCAAGACCAAAACGGAAGCCGATTCATCCTTACCCACGTAAAGTAGTTGAAATCGCAAAGAATGAAATCTCCAACTTGGAACAGCCACTGAGGTCTAATTCGCTTGTGTCGTTAGATTTTGGTAAAGAAAACAACTCTCCAAAGTCGGTATTATCTGCAGTTGCTTCAGAAACCCTTGGTTTCTCTGATTCAGATACCCCTGCCGGAAGTTTGTCCCCGGTCTCATCCATCAGTGCTGTCCATACCAGTAGATTTCCACTTCTTGAGTCCAAATCATCATCATCTGAGGAAGATCTGTCTCAACAAATAGATGAACTGAATACCGGTTCAACTCATGATGTACAACCTTTAATGAAACTGGAGCTTTTCCCTAAAGAATGTGTCGCAACCAACGAAGTAGCAGCAGAAGAATCACCTTGTCGAACTCTCAAACTTTTTGGAACAACTCTGTTAGTAAAAGATACCTGCAAGTCTTCTTCGACATCAACGGACACATCTGAACCTATTCCTGCCATGCAGCAACTTCAGCGTGGTTGTTCAGATATTAGTCTTGCAACTGTTGTTCCTTGGTGGACTATTTCAGACAATTCGGCCTTCAAGCCACTGCACAAGGAATCCGAGGGAAAACATCTACATTCAAATCATGAAGAATGCGAAGAAAAAGAGATTCAAAAGGAAGGATCTTCTTGTGTTGGTTCTAATAGCACTAGCTCAATGAATGATGAAGAAAGCAATGAAAGGTTAGACGATCAAGCCAAAAGTGATAATGTGAATTACTTTGTTGGCCACACTACACTAAGTGAAACAGTGAGACTTAAAACATTTGGAAAAGGGTTTGTACCATATAAAAGGTGCATGGCAGAAAGAGAAAGACAATGTTTGACAGTAACAGACGAGAGGAGGGAACATCAACGTATGAGGCTTTCCTTATAG

Protein sequence

>Msa0736510

MEILGQKEGMHSVVHVQKLLDQFSCGNDHALKARKPYTITKQREKWTDEEHKKFLEALKLYGRAWRKIEEHVGTKTAVQIRSHAQKFFSKINRDTDGNDTTMVETIEIPPPRPKRKPIHPYPRKVVEIAKNEISNLEQPLRSNSLVSLDFGKENNSPKSVLSAVASETLGFSDSDTPAGSLSPVSSISAVHTSRFPLLESKSSSSEEDLSQQIDELNTGSTHDVQPLMKLELFPKECVATNEVAAEESPCRTLKLFGTTLLVKDTCKSSSTSTDTSEPIPAMQQLQRGCSDISLATVVPWWTISDNSAFKPLHKESEGKHLHSNHEECEEKEIQKEGSSCVGSNSTSSMNDEESNERLDDQAKSDNVNYFVGHTTLSETVRLKTFGKGFVPYKRCMAERERQCLTVTDERREHQRMRLSL*