AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0781840


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0781840 MtrunA17_Chr5g0433851 96.190 420 16 0 1 420 1 420 0.0 783
Msa0781840 MtrunA17_Chr3g0109791 61.189 286 103 3 4 288 19 297 7.12e-103 309
Msa0781840 MtrunA17_Chr6g0481061 36.726 452 205 14 24 418 38 465 1.93e-55 190
Msa0781840 MtrunA17_Chr8g0348391 40.000 215 94 6 28 226 49 244 2.10e-34 130
Msa0781840 MtrunA17_Chr1g0181771 55.769 104 38 1 24 127 28 123 2.60e-34 129
Msa0781840 MtrunA17_Chr7g0276421 67.619 105 32 1 23 125 6 110 1.11e-32 130
Msa0781840 MtrunA17_Chr6g0469431 55.882 102 37 2 28 129 35 128 2.27e-31 119
Msa0781840 MtrunA17_Chr4g0030281 60.000 95 34 1 174 264 134 228 1.95e-23 102
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0781840 AT5G17300.1 45.272 349 128 11 21 357 33 330 3.60e-55 187
Msa0781840 AT5G37260.1 58.537 164 59 3 23 186 16 170 2.06e-44 156
Msa0781840 AT3G10113.1 44.105 229 104 6 28 245 50 265 1.78e-37 139
Msa0781840 AT1G18330.1 41.224 245 113 7 28 245 35 275 2.96e-37 139
Msa0781840 AT1G18330.2 41.224 245 113 7 28 245 61 301 5.38e-37 139
Msa0781840 AT2G46830.1 61.798 89 34 0 20 108 1 89 2.89e-32 129
Msa0781840 AT3G09600.1 58.586 99 33 2 32 130 32 122 5.33e-32 123
Msa0781840 AT3G09600.7 58.586 99 33 2 32 130 32 122 5.33e-32 123
Msa0781840 AT3G09600.2 58.586 99 33 2 32 130 32 122 5.94e-32 123
Msa0781840 AT3G09600.6 58.586 99 33 2 32 130 32 122 5.94e-32 123
Msa0781840 AT3G09600.4 58.586 99 33 2 32 130 32 122 6.08e-32 122
Msa0781840 AT1G01060.4 64.486 107 36 1 20 124 1 107 2.32e-31 127
Msa0781840 AT1G01060.8 64.486 107 36 1 20 124 1 107 2.33e-31 127
Msa0781840 AT1G01060.2 64.486 107 36 1 20 124 1 107 2.33e-31 127
Msa0781840 AT1G01060.3 64.486 107 36 1 20 124 1 107 2.33e-31 127
Msa0781840 AT1G01060.1 64.486 107 36 1 20 124 1 107 2.33e-31 127
Msa0781840 AT1G01060.7 64.486 107 36 1 20 124 1 107 2.33e-31 127
Msa0781840 AT5G52660.2 56.122 98 35 1 28 125 57 146 1.62e-30 120
Msa0781840 AT5G52660.1 56.122 98 35 1 28 125 57 146 1.63e-30 120
Msa0781840 AT1G01520.2 42.208 154 71 3 28 181 46 181 3.13e-30 117
Msa0781840 AT1G01520.4 42.208 154 71 3 28 181 46 181 3.13e-30 117
Msa0781840 AT1G01520.1 42.208 154 71 3 28 181 46 181 4.09e-30 118
Msa0781840 AT1G01520.3 42.208 154 71 3 28 181 46 181 4.13e-30 118
Msa0781840 AT4G01280.2 56.863 102 36 2 24 125 40 133 4.95e-30 118
Msa0781840 AT4G01280.1 56.863 102 36 2 24 125 40 133 5.42e-30 118
Msa0781840 AT5G02840.4 51.304 115 47 3 32 145 37 143 5.70e-30 117
Msa0781840 AT5G02840.3 59.140 93 30 2 32 124 37 121 7.04e-30 117
Msa0781840 AT5G02840.1 58.511 94 31 2 32 125 37 122 7.47e-30 117
Msa0781840 AT5G02840.2 58.511 94 31 2 32 125 37 122 7.47e-30 117
Msa0781840 AT5G02840.5 51.304 115 47 3 32 145 37 143 9.99e-30 117
Msa0781840 AT5G17300.2 40.604 298 122 12 68 357 5 255 3.33e-23 99.8
Msa0781840 AT3G09600.3 50.000 64 24 1 61 124 5 60 4.96e-15 74.7
Msa0781840 AT3G09600.8 50.000 64 24 1 61 124 5 60 4.96e-15 74.7
Msa0781840 AT3G09600.5 53.125 64 22 2 61 124 5 60 5.65e-15 74.3
Msa0781840 AT3G09600.9 53.125 64 22 2 61 124 5 60 5.65e-15 74.3

Find 101 sgRNAs with CRISPR-Local

Find 193 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTGATTCTATGGAGATTT+TGG 0.128871 5_2:-64470260 Msa0781840:intron
TTCAATTTACATCTATAAAA+TGG 0.182082 5_2:+64467565 None:intergenic
TCATGATGTACAACCTTTAA+TGG 0.196529 5_2:-64468475 Msa0781840:intron
TCGCTTGTGTCGTTAGATTT+TGG 0.203212 5_2:-64468708 Msa0781840:CDS
ATCACTTGATTCTGATTCTA+TGG 0.207453 5_2:-64470269 Msa0781840:exon
GATTTAAGAAATACCATTAA+AGG 0.226502 5_2:+64468462 None:intergenic
GTAATTCACATTATCACTTT+TGG 0.280046 5_2:+64467778 None:intergenic
CTTGAAGCTTTAAAGTTATA+TGG 0.282867 5_2:-64469264 Msa0781840:CDS
TTCCTCAGATGATGATGATT+TGG 0.286247 5_2:+64468539 None:intergenic
TTAAGTGTAAGGTACGTATT+TGG 0.296154 5_2:-64467267 Msa0781840:three_prime_UTR
TGGTTGCGACACATTCTTTA+GGG 0.316667 5_2:+64468164 None:intergenic
AAGGGTTTGTACCATATAAA+AGG 0.320529 5_2:-64467703 Msa0781840:CDS
TCCTTTAAAGAAAATCCTAT+TGG 0.326367 5_2:+64467592 None:intergenic
GGATGAATCGGCTTCCGTTT+TGG 0.347869 5_2:+64468801 None:intergenic
TTGGTTGCGACACATTCTTT+AGG 0.358230 5_2:+64468163 None:intergenic
ACAGTGAGACTTAAAACATT+TGG 0.363877 5_2:-64467728 Msa0781840:CDS
CCTTATAGTTCCCTCCCAAT+AGG 0.373169 5_2:-64467607 Msa0781840:exon
ACTGGATAATTCACAGTAGA+TGG 0.382341 5_2:+64467347 None:intergenic
TTCATGAAAGTTTAAGTGTA+AGG 0.382634 5_2:-64467278 Msa0781840:three_prime_UTR
CGCTGAAGTTGCTGCATGGC+AGG 0.384263 5_2:+64468025 None:intergenic
CCTATTGGGAGGGAACTATA+AGG 0.389437 5_2:+64467607 None:intergenic
TTCCTTGTGCAGTGGCTTGA+AGG 0.395573 5_2:+64467940 None:intergenic
TGATGTCGAAGAAGACTTGC+AGG 0.401545 5_2:+64468069 None:intergenic
AGACTTAAAACATTTGGAAA+AGG 0.403830 5_2:-64467722 Msa0781840:CDS
CCTTTAAAGAAAATCCTATT+GGG 0.410008 5_2:+64467593 None:intergenic
GGTATCAGAAAAGAGAGAAA+TGG 0.410934 5_2:-64467505 Msa0781840:three_prime_UTR
TGAGACCGGGGACAAACTTC+CGG 0.418000 5_2:+64468605 None:intergenic
CATATAACTTTAAAGCTTCA+AGG 0.418211 5_2:+64469265 None:intergenic
ATAGAGAACATATGAACAAT+TGG 0.430216 5_2:+64467237 None:intergenic
GTCTTGCAACTGTTGTTCCT+TGG 0.430710 5_2:-64467985 Msa0781840:CDS
GTTTCTGTTGCCAGATTACA+TGG 0.434006 5_2:-64467526 Msa0781840:three_prime_UTR
GTATCAGAAAAGAGAGAAAT+GGG 0.441882 5_2:-64467504 Msa0781840:three_prime_UTR
AGTTGCTGCATGGCAGGAAT+AGG 0.442858 5_2:+64468031 None:intergenic
GATAATGTGAATTACTTTGT+TGG 0.443037 5_2:-64467770 Msa0781840:CDS
CAAGTCTTCTTCGACATCAA+TGG 0.448980 5_2:-64468065 Msa0781840:CDS
TTGCAACTGTTGTTCCTTGG+TGG 0.457649 5_2:-64467982 Msa0781840:CDS
TTTACAATGGCCAAAGTGGC+AGG 0.460438 5_2:-64467399 Msa0781840:three_prime_UTR
ACTGCAGATAATACCGACTT+TGG 0.472597 5_2:+64468669 None:intergenic
CCCTCGGGTTCCTTGTGCAG+TGG 0.476144 5_2:+64467932 None:intergenic
TAAAGTTATATGGCCGAGCC+TGG 0.476367 5_2:-64469254 Msa0781840:CDS
TTTAGGAAGTTATTACATCA+TGG 0.477399 5_2:+64467203 None:intergenic
TTGTACATCATGAGTTGAAC+CGG 0.478057 5_2:+64468485 None:intergenic
CTCAAGAAGTGGAAATCTAC+TGG 0.479784 5_2:+64468563 None:intergenic
GACTTAAAACATTTGGAAAA+GGG 0.481341 5_2:-64467721 Msa0781840:CDS
TCAACTACTTTACGTGGGTA+AGG 0.488398 5_2:+64468780 None:intergenic
AATACAAAAGCCTGCCACTT+TGG 0.489088 5_2:+64467389 None:intergenic
GAATGAAGGGAGAACCTTCA+AGG 0.489688 5_2:+64469464 None:intergenic
AAGGAAGGATCTTCTTGTGT+TGG 0.490240 5_2:-64467860 Msa0781840:CDS
GCAGTTGCTTCAGAAACCCT+TGG 0.491941 5_2:-64468651 Msa0781840:CDS
TTACGTGGGTAAGGATGAAT+CGG 0.497072 5_2:+64468789 None:intergenic
TGGAAATGACCATGCCTTGA+AGG 0.504748 5_2:-64469478 Msa0781840:intron
CGGGGACAAACTTCCGGCAG+GGG 0.506435 5_2:+64468611 None:intergenic
TTCTTCTGCTGCTACTTCGT+TGG 0.506774 5_2:+64468144 None:intergenic
GAAGTGGAAATCTACTGGTA+TGG 0.509677 5_2:+64468568 None:intergenic
CAGCACTGATGGATGAGACC+GGG 0.531459 5_2:+64468592 None:intergenic
GCGATTTCAACTACTTTACG+TGG 0.532217 5_2:+64468774 None:intergenic
ACCGGGGACAAACTTCCGGC+AGG 0.532872 5_2:+64468609 None:intergenic
GGAGGGAACATCAACGTATG+AGG 0.535905 5_2:-64467634 Msa0781840:CDS
ACTGGTATGGACAGCACTGA+TGG 0.540181 5_2:+64468581 None:intergenic
CCCTGCCGGAAGTTTGTCCC+CGG 0.547980 5_2:-64468610 Msa0781840:CDS
CAAATAGATGAACTGAATAC+CGG 0.548505 5_2:-64468504 Msa0781840:CDS
CCTCAGTGGCTGTTCCAAGT+TGG 0.552497 5_2:+64468737 None:intergenic
CTGTTTCACTTAGTGTAGTG+TGG 0.555752 5_2:+64467747 None:intergenic
TCTGATTCAGATACCCCTGC+CGG 0.559724 5_2:-64468624 Msa0781840:CDS
TCACAAAACAGAGAGAAAAG+TGG 0.563691 5_2:-64469311 Msa0781840:CDS
CGACAGTAACAGACGAGAGG+AGG 0.565037 5_2:-64467652 Msa0781840:CDS
CCGGGGACAAACTTCCGGCA+GGG 0.568889 5_2:+64468610 None:intergenic
TTAAAGAAAATCCTATTGGG+AGG 0.569251 5_2:+64467596 None:intergenic
TAAAGAAAATCCTATTGGGA+GGG 0.572184 5_2:+64467597 None:intergenic
TGTAAGGTACGTATTTGGTA+AGG 0.572515 5_2:-64467262 Msa0781840:three_prime_UTR
ACAGCACTGATGGATGAGAC+CGG 0.582260 5_2:+64468591 None:intergenic
AGCCTTCAAGCCACTGCACA+AGG 0.587919 5_2:-64467942 Msa0781840:CDS
CAGATCAATCGAGACACTGA+TGG 0.591725 5_2:-64468870 Msa0781840:CDS
TTCCACCTCCAAGACCAAAA+CGG 0.592397 5_2:-64468815 Msa0781840:CDS
AAAGAATGAAATCTCCAACT+TGG 0.596383 5_2:-64468751 Msa0781840:CDS
GACAGTAACAGACGAGAGGA+GGG 0.604818 5_2:-64467651 Msa0781840:CDS
CGATTTCAACTACTTTACGT+GGG 0.606836 5_2:+64468775 None:intergenic
AAGGGAGAACCTTCAAGGCA+TGG 0.608656 5_2:+64469469 None:intergenic
GCCACTGCACAAGGAACCCG+AGG 0.620928 5_2:-64467933 Msa0781840:CDS
GATGATTTGGACTCAAGAAG+TGG 0.621298 5_2:+64468552 None:intergenic
ATGATGAAGAAAGCAATGAA+AGG 0.625912 5_2:-64467814 Msa0781840:CDS
ACCACGCTGAAGTTGCTGCA+TGG 0.627773 5_2:+64468021 None:intergenic
AGATCAATCGAGACACTGAT+GGG 0.631943 5_2:-64468869 Msa0781840:CDS
AGAAAACAACTCTCCAAAGT+CGG 0.638359 5_2:-64468682 Msa0781840:CDS
GTCCAAATCATCATCATCTG+AGG 0.641348 5_2:-64468541 Msa0781840:CDS
TATCTGAATCAGAGAAACCA+AGG 0.643676 5_2:+64468634 None:intergenic
ATCAGAAAAGAGAGAAATGG+GGG 0.658210 5_2:-64467502 Msa0781840:three_prime_UTR
TGTACCATATAAAAGGTGCA+TGG 0.659379 5_2:-64467696 Msa0781840:CDS
AGCACTGATGGATGAGACCG+GGG 0.683824 5_2:+64468593 None:intergenic
ATCTGAATCAGAGAAACCAA+GGG 0.684620 5_2:+64468635 None:intergenic
TGGGAATGACACAACAATGG+TGG 0.695952 5_2:-64468850 Msa0781840:CDS
CCAACTTGGAACAGCCACTG+AGG 0.697656 5_2:-64468737 Msa0781840:CDS
GGATAATTCACAGTAGATGG+CGG 0.698012 5_2:+64467350 None:intergenic
TTGTCTGAAATAGTCCACCA+AGG 0.712422 5_2:+64467968 None:intergenic
GCCATGCAGCAACTTCAGCG+TGG 0.713190 5_2:-64468022 Msa0781840:CDS
GTTCGACAGTAACAGACGAG+AGG 0.713362 5_2:-64467655 Msa0781840:CDS
TGATGGGAATGACACAACAA+TGG 0.720056 5_2:-64468853 Msa0781840:CDS
CCACTGCACAAGGAACCCGA+GGG 0.723649 5_2:-64467932 Msa0781840:CDS
TATCAGAAAAGAGAGAAATG+GGG 0.733558 5_2:-64467503 Msa0781840:three_prime_UTR
AAAAGTTTGAGAGTTCGACA+AGG 0.741043 5_2:+64468118 None:intergenic
ACAAGCGAATTAGACCTCAG+TGG 0.788179 5_2:+64468723 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTATTTTGTATTTTATTCT+TGG - chr5_2:64467416-64467435 Msa0781840:three_prime_UTR 10.0%
!! AAAAGAAATGAAAAATATAT+TGG - chr5_2:64467511-64467530 Msa0781840:three_prime_UTR 10.0%
!! AATAAAAATCTATGAATATT+TGG + chr5_2:64467565-64467584 None:intergenic 10.0%
!!! TCATAGATTTTTATTATAAT+TGG - chr5_2:64467570-64467589 Msa0781840:three_prime_UTR 10.0%
!!! CATAGATTTTTATTATAATT+GGG - chr5_2:64467571-64467590 Msa0781840:three_prime_UTR 10.0%
!! AAAAATAAATAAAAATCATG+TGG - chr5_2:64467766-64467785 Msa0781840:CDS 10.0%
!!! AAATTTATGTATACTTTTAT+AGG - chr5_2:64468219-64468238 Msa0781840:intron 10.0%
!! AATTAATAAATCAGAAAATA+TGG - chr5_2:64468427-64468446 Msa0781840:intron 10.0%
!!! ATAAATTTTCACTTAATATA+TGG + chr5_2:64468578-64468597 None:intergenic 10.0%
!!! TAATTAAAAAGAGAGTATTT+TGG - chr5_2:64467874-64467893 Msa0781840:CDS 15.0%
!! AAAAAAAAAAAAATCCTTTC+TGG - chr5_2:64467900-64467919 Msa0781840:CDS 15.0%
!! TGTAATTAACAAAATGAAAT+AGG + chr5_2:64469139-64469158 None:intergenic 15.0%
!! TTCAATTTACATCTATAAAA+TGG + chr5_2:64470009-64470028 None:intergenic 15.0%
!!! AAAATATATTGGTTGTGATT+TGG - chr5_2:64467522-64467541 Msa0781840:three_prime_UTR 20.0%
!!! GAAAAAAAGTTATTTTTGAG+TGG - chr5_2:64467620-64467639 Msa0781840:exon 20.0%
!! ATAAATAAAAATCATGTGGA+TGG - chr5_2:64467770-64467789 Msa0781840:CDS 20.0%
!!! GTGTTTTTTTGTATGATATT+TGG - chr5_2:64467792-64467811 Msa0781840:CDS 20.0%
!! TTCACTTAATATATGGTTTA+TGG + chr5_2:64468571-64468590 None:intergenic 20.0%
!! AAGTGAAAATTTATGATGAA+TGG - chr5_2:64468584-64468603 Msa0781840:CDS 20.0%
!! GATTTAAGAAATACCATTAA+AGG + chr5_2:64469112-64469131 None:intergenic 20.0%
!! TTAACAAAATGAAATAGGTT+AGG + chr5_2:64469134-64469153 None:intergenic 20.0%
!!! TCATTTTGTTAATTACAACA+AGG - chr5_2:64469142-64469161 Msa0781840:intron 20.0%
!! CTCAATATGTAAGAAAAATT+AGG + chr5_2:64470138-64470157 None:intergenic 20.0%
!!! TCAAGCATCAATAAATTTTT+AGG + chr5_2:64470388-64470407 None:intergenic 20.0%
!!! ATTTTATTCTTGGTTTTGTG+AGG - chr5_2:64467426-64467445 Msa0781840:three_prime_UTR 25.0%
! ATGGAATGGTTCAATTATTA+AGG - chr5_2:64467840-64467859 Msa0781840:CDS 25.0%
! TGGAATGGTTCAATTATTAA+GGG - chr5_2:64467841-64467860 Msa0781840:CDS 25.0%
!!! TTGCTATTTGATCAATTTTC+AGG - chr5_2:64468009-64468028 Msa0781840:CDS 25.0%
!!! TGCTATTTGATCAATTTTCA+GGG - chr5_2:64468010-64468029 Msa0781840:CDS 25.0%
! CAGATAAGATTAAGAATGAA+GGG + chr5_2:64468123-64468142 None:intergenic 25.0%
! ACAGATAAGATTAAGAATGA+AGG + chr5_2:64468124-64468143 None:intergenic 25.0%
!! TATGTATACTTTTATAGGCA+AGG - chr5_2:64468224-64468243 Msa0781840:intron 25.0%
!!! CATATAACTTTAAAGCTTCA+AGG + chr5_2:64468309-64468328 None:intergenic 25.0%
!!! CTTGAAGCTTTAAAGTTATA+TGG - chr5_2:64468307-64468326 Msa0781840:intron 25.0%
!!! AGTTTTGAATTTTCAGATCT+TGG - chr5_2:64468361-64468380 Msa0781840:intron 25.0%
!! GAAAATATGGTCTAAGTTTT+TGG - chr5_2:64468440-64468459 Msa0781840:intron 25.0%
! AGATCAAACATAAGAACAAA+AGG + chr5_2:64469360-64469379 None:intergenic 25.0%
! TCTTAATATTGTCTAGAAAC+TGG - chr5_2:64469377-64469396 Msa0781840:intron 25.0%
!! GTAATTCACATTATCACTTT+TGG + chr5_2:64469796-64469815 None:intergenic 25.0%
! GATAATGTGAATTACTTTGT+TGG - chr5_2:64469801-64469820 Msa0781840:intron 25.0%
! AGACTTAAAACATTTGGAAA+AGG - chr5_2:64469849-64469868 Msa0781840:intron 25.0%
! GACTTAAAACATTTGGAAAA+GGG - chr5_2:64469850-64469869 Msa0781840:intron 25.0%
!! CCTTTAAAGAAAATCCTATT+GGG + chr5_2:64469981-64470000 None:intergenic 25.0%
!! TCCTTTAAAGAAAATCCTAT+TGG + chr5_2:64469982-64470001 None:intergenic 25.0%
!! TACAAGACTTCTTTTTACAA+TGG - chr5_2:64470159-64470178 Msa0781840:intron 25.0%
!!! TATCCAGTTTTTTTAGCTTA+TGG - chr5_2:64470239-64470258 Msa0781840:intron 25.0%
! TTCATGAAAGTTTAAGTGTA+AGG - chr5_2:64470293-64470312 Msa0781840:five_prime_UTR 25.0%
! ATAGAGAACATATGAACAAT+TGG + chr5_2:64470337-64470356 None:intergenic 25.0%
! TTTAGGAAGTTATTACATCA+TGG + chr5_2:64470371-64470390 None:intergenic 25.0%
AATAGTTGAAGAAAAACACG+AGG + chr5_2:64467208-64467227 None:intergenic 30.0%
ATCACTTGATTCTGATTCTA+TGG - chr5_2:64467302-64467321 Msa0781840:three_prime_UTR 30.0%
! TTCTGATTCTATGGAGATTT+TGG - chr5_2:64467311-64467330 Msa0781840:three_prime_UTR 30.0%
CAAATAACAACCTTAATCTC+AGG + chr5_2:64467454-64467473 None:intergenic 30.0%
! CTGAGATTAAGGTTGTTATT+TGG - chr5_2:64467452-64467471 Msa0781840:three_prime_UTR 30.0%
!! TTTTGAGTGGTTCTTGTTAA+TGG - chr5_2:64467633-64467652 Msa0781840:CDS 30.0%
AGAATATACCTAGCTAAACA+AGG - chr5_2:64467679-64467698 Msa0781840:CDS 30.0%
CAAAGTTAGTTACAAGGTTA+AGG + chr5_2:64467705-64467724 None:intergenic 30.0%
ACTCAACAAAGTTAGTTACA+AGG + chr5_2:64467711-64467730 None:intergenic 30.0%
! ATTTGGTTTATGTCTTCTTG+TGG - chr5_2:64467809-64467828 Msa0781840:CDS 30.0%
GACTAAAATCATAACCAGAA+AGG + chr5_2:64467917-64467936 None:intergenic 30.0%
!! AATTTTCAGGGTCAAAAAGA+AGG - chr5_2:64468022-64468041 Msa0781840:CDS 30.0%
! CTACTTGATCAATTTTCATG+TGG - chr5_2:64468073-64468092 Msa0781840:CDS 30.0%
! CTCTGTTTTGTGATAGTATA+TGG + chr5_2:64468253-64468272 None:intergenic 30.0%
AAAGATTCTTCTTGCAAAAG+AGG - chr5_2:64468397-64468416 Msa0781840:intron 30.0%
ATGTTCTGTGGTGAAAATAA+AGG + chr5_2:64468468-64468487 None:intergenic 30.0%
!!! TGCTCAGAAGTTTTTTTCTA+AGG - chr5_2:64468523-64468542 Msa0781840:CDS 30.0%
!!! ATTTTCAAGTTTCAACCTCA+AGG + chr5_2:64468636-64468655 None:intergenic 30.0%
AAAGAATGAAATCTCCAACT+TGG - chr5_2:64468820-64468839 Msa0781840:CDS 30.0%
CAAATAGATGAACTGAATAC+CGG - chr5_2:64469067-64469086 Msa0781840:CDS 30.0%
TCATGATGTACAACCTTTAA+TGG - chr5_2:64469096-64469115 Msa0781840:intron 30.0%
AGAGACATCAAAAACTATGA+TGG + chr5_2:64469205-64469224 None:intergenic 30.0%
CGAAGAAAAAGAGATTCAAA+AGG - chr5_2:64469692-64469711 Msa0781840:intron 30.0%
GAAAAAGAGATTCAAAAGGA+AGG - chr5_2:64469696-64469715 Msa0781840:intron 30.0%
ATGATGAAGAAAGCAATGAA+AGG - chr5_2:64469757-64469776 Msa0781840:intron 30.0%
ACAGTGAGACTTAAAACATT+TGG - chr5_2:64469843-64469862 Msa0781840:intron 30.0%
AAGGGTTTGTACCATATAAA+AGG - chr5_2:64469868-64469887 Msa0781840:intron 30.0%
TAAAGAAAATCCTATTGGGA+GGG + chr5_2:64469977-64469996 None:intergenic 30.0%
TTAAAGAAAATCCTATTGGG+AGG + chr5_2:64469978-64469997 None:intergenic 30.0%
! CCCAATAGGATTTTCTTTAA+AGG - chr5_2:64469978-64469997 Msa0781840:intron 30.0%
! TTTTCTGATACCATGTAATC+TGG + chr5_2:64470058-64470077 None:intergenic 30.0%
GTATCAGAAAAGAGAGAAAT+GGG - chr5_2:64470067-64470086 Msa0781840:intron 30.0%
TATCAGAAAAGAGAGAAATG+GGG - chr5_2:64470068-64470087 Msa0781840:intron 30.0%
TGTAAGAAAAATTAGGCTTG+TGG + chr5_2:64470131-64470150 None:intergenic 30.0%
TTAAGTGTAAGGTACGTATT+TGG - chr5_2:64470304-64470323 Msa0781840:five_prime_UTR 30.0%
AAGAAAAACACGAGGAAAGA+GGG + chr5_2:64467200-64467219 None:intergenic 35.0%
! GAGTCATCACAGTCTAATTT+TGG - chr5_2:64467727-64467746 Msa0781840:CDS 35.0%
TCACAAAACAGAGAGAAAAG+TGG - chr5_2:64468260-64468279 Msa0781840:intron 35.0%
! ATTTTCACCACAGAACATGT+TGG - chr5_2:64468470-64468489 Msa0781840:intron 35.0%
AATTTATGATGAATGGCCCT+TGG - chr5_2:64468591-64468610 Msa0781840:CDS 35.0%
TTTGCATTTAGCATCTCCAA+GGG + chr5_2:64468610-64468629 None:intergenic 35.0%
CGATTTCAACTACTTTACGT+GGG + chr5_2:64468799-64468818 None:intergenic 35.0%
AGAAAACAACTCTCCAAAGT+CGG - chr5_2:64468889-64468908 Msa0781840:intron 35.0%
ATCTGAATCAGAGAAACCAA+GGG + chr5_2:64468939-64468958 None:intergenic 35.0%
TATCTGAATCAGAGAAACCA+AGG + chr5_2:64468940-64468959 None:intergenic 35.0%
! TTCCTCAGATGATGATGATT+TGG + chr5_2:64469035-64469054 None:intergenic 35.0%
! TTGTACATCATGAGTTGAAC+CGG + chr5_2:64469089-64469108 None:intergenic 35.0%
CATGACTGATATCGTAATCA+AGG + chr5_2:64469321-64469340 None:intergenic 35.0%
AAAAGTTTGAGAGTTCGACA+AGG + chr5_2:64469456-64469475 None:intergenic 35.0%
! TGTCGAACTCTCAAACTTTT+TGG - chr5_2:64469456-64469475 Msa0781840:intron 35.0%
! TGAATGTAGATGTTTTCCCT+CGG + chr5_2:64469658-64469677 None:intergenic 35.0%
! TGTACCATATAAAAGGTGCA+TGG - chr5_2:64469875-64469894 Msa0781840:intron 35.0%
GGTATCAGAAAAGAGAGAAA+TGG - chr5_2:64470066-64470085 Msa0781840:intron 35.0%
ATCAGAAAAGAGAGAAATGG+GGG - chr5_2:64470069-64470088 Msa0781840:intron 35.0%
! TTTTGACATATCTGCTGCAT+TGG - chr5_2:64470098-64470117 Msa0781840:intron 35.0%
AAGAAAAATTAGGCTTGTGG+AGG + chr5_2:64470128-64470147 None:intergenic 35.0%
! TCTTTTTACAATGGCCAAAG+TGG - chr5_2:64470168-64470187 Msa0781840:intron 35.0%
ACTGGATAATTCACAGTAGA+TGG + chr5_2:64470227-64470246 None:intergenic 35.0%
CAGCCATAAGCTAAAAAAAC+TGG + chr5_2:64470245-64470264 None:intergenic 35.0%
TGTAAGGTACGTATTTGGTA+AGG - chr5_2:64470309-64470328 Msa0781840:five_prime_UTR 35.0%
GAAGAAAAACACGAGGAAAG+AGG + chr5_2:64467201-64467220 None:intergenic 40.0%
TTGTGAGGAACCTGAGATTA+AGG - chr5_2:64467441-64467460 Msa0781840:three_prime_UTR 40.0%
TTATGTCTTCTTGTGGTGTG+TGG - chr5_2:64467816-64467835 Msa0781840:CDS 40.0%
! AATACCTTCGATTTTTCGCC+AGG + chr5_2:64468338-64468357 None:intergenic 40.0%
GTTTGCATTTAGCATCTCCA+AGG + chr5_2:64468611-64468630 None:intergenic 40.0%
GCTAAATGCAAACTTCCTTG+AGG - chr5_2:64468618-64468637 Msa0781840:CDS 40.0%
AGATCAATCGAGACACTGAT+GGG - chr5_2:64468702-64468721 Msa0781840:CDS 40.0%
TGATGGGAATGACACAACAA+TGG - chr5_2:64468718-64468737 Msa0781840:CDS 40.0%
TTACGTGGGTAAGGATGAAT+CGG + chr5_2:64468785-64468804 None:intergenic 40.0%
TCAACTACTTTACGTGGGTA+AGG + chr5_2:64468794-64468813 None:intergenic 40.0%
GCGATTTCAACTACTTTACG+TGG + chr5_2:64468800-64468819 None:intergenic 40.0%
!! TCGCTTGTGTCGTTAGATTT+TGG - chr5_2:64468863-64468882 Msa0781840:CDS 40.0%
!! ACTGCAGATAATACCGACTT+TGG + chr5_2:64468905-64468924 None:intergenic 40.0%
GAAGTGGAAATCTACTGGTA+TGG + chr5_2:64469006-64469025 None:intergenic 40.0%
CTCAAGAAGTGGAAATCTAC+TGG + chr5_2:64469011-64469030 None:intergenic 40.0%
! GATGATTTGGACTCAAGAAG+TGG + chr5_2:64469022-64469041 None:intergenic 40.0%
GTCCAAATCATCATCATCTG+AGG - chr5_2:64469030-64469049 Msa0781840:intron 40.0%
TGCTAATGCAACTCCAATCA+TGG + chr5_2:64469242-64469261 None:intergenic 40.0%
AGGCATTATGTTGAAATCGC+AGG + chr5_2:64469301-64469320 None:intergenic 40.0%
TGGTTGCGACACATTCTTTA+GGG + chr5_2:64469410-64469429 None:intergenic 40.0%
TTGGTTGCGACACATTCTTT+AGG + chr5_2:64469411-64469430 None:intergenic 40.0%
CAAGTCTTCTTCGACATCAA+TGG - chr5_2:64469506-64469525 Msa0781840:CDS 40.0%
! TTGTCTGAAATAGTCCACCA+AGG + chr5_2:64469606-64469625 None:intergenic 40.0%
! GAATGTAGATGTTTTCCCTC+GGG + chr5_2:64469657-64469676 None:intergenic 40.0%
AAGGAAGGATCTTCTTGTGT+TGG - chr5_2:64469711-64469730 Msa0781840:intron 40.0%
CTGTTTCACTTAGTGTAGTG+TGG + chr5_2:64469827-64469846 None:intergenic 40.0%
! TCTGCCATGCACCTTTTATA+TGG + chr5_2:64469882-64469901 None:intergenic 40.0%
GTTTCTGTTGCCAGATTACA+TGG - chr5_2:64470045-64470064 Msa0781840:intron 40.0%
! AATACAAAAGCCTGCCACTT+TGG + chr5_2:64470185-64470204 None:intergenic 40.0%
GGATAATTCACAGTAGATGG+CGG + chr5_2:64470224-64470243 None:intergenic 40.0%
!! GGTTAAGGCCTTGTTTAGCT+AGG + chr5_2:64467690-64467709 None:intergenic 45.0%
TCTTCTTGTGGTGTGTGGAA+TGG - chr5_2:64467821-64467840 Msa0781840:CDS 45.0%
TTGTGGTGTGTGGAATGGAA+TGG - chr5_2:64467826-64467845 Msa0781840:CDS 45.0%
TGGAAATGACCATGCCTTGA+AGG - chr5_2:64468093-64468112 Msa0781840:CDS 45.0%
GAATGAAGGGAGAACCTTCA+AGG + chr5_2:64468110-64468129 None:intergenic 45.0%
TAAAGTTATATGGCCGAGCC+TGG - chr5_2:64468317-64468336 Msa0781840:intron 45.0%
CTTTGTGCCAACATGTTCTG+TGG + chr5_2:64468480-64468499 None:intergenic 45.0%
CAGATCAATCGAGACACTGA+TGG - chr5_2:64468701-64468720 Msa0781840:CDS 45.0%
TGGGAATGACACAACAATGG+TGG - chr5_2:64468721-64468740 Msa0781840:CDS 45.0%
TTCCACCTCCAAGACCAAAA+CGG - chr5_2:64468756-64468775 Msa0781840:CDS 45.0%
ACAAGCGAATTAGACCTCAG+TGG + chr5_2:64468851-64468870 None:intergenic 45.0%
! TTCTTCTGCTGCTACTTCGT+TGG + chr5_2:64469430-64469449 None:intergenic 45.0%
TGATGTCGAAGAAGACTTGC+AGG + chr5_2:64469505-64469524 None:intergenic 45.0%
GTCTTGCAACTGTTGTTCCT+TGG - chr5_2:64469586-64469605 Msa0781840:intron 45.0%
TTGCAACTGTTGTTCCTTGG+TGG - chr5_2:64469589-64469608 Msa0781840:intron 45.0%
CCTATTGGGAGGGAACTATA+AGG + chr5_2:64469967-64469986 None:intergenic 45.0%
CCTTATAGTTCCCTCCCAAT+AGG - chr5_2:64469964-64469983 Msa0781840:intron 45.0%
TTTACAATGGCCAAAGTGGC+AGG - chr5_2:64470172-64470191 Msa0781840:intron 45.0%
AAGGGAGAACCTTCAAGGCA+TGG + chr5_2:64468105-64468124 None:intergenic 50.0%
! CTTCGATTTTTCGCCAGGCT+CGG + chr5_2:64468333-64468352 None:intergenic 50.0%
!!! TTCCGTTTTGGTCTTGGAGG+TGG + chr5_2:64468761-64468780 None:intergenic 50.0%
!! ATCGGCTTCCGTTTTGGTCT+TGG + chr5_2:64468767-64468786 None:intergenic 50.0%
!! GGATGAATCGGCTTCCGTTT+TGG + chr5_2:64468773-64468792 None:intergenic 50.0%
GCAGTTGCTTCAGAAACCCT+TGG - chr5_2:64468920-64468939 Msa0781840:intron 50.0%
TCTGATTCAGATACCCCTGC+CGG - chr5_2:64468947-64468966 Msa0781840:intron 50.0%
!! ACAGCACTGATGGATGAGAC+CGG + chr5_2:64468983-64469002 None:intergenic 50.0%
! ACTGGTATGGACAGCACTGA+TGG + chr5_2:64468993-64469012 None:intergenic 50.0%
ACTGTCTGCGACTGCAATCA+TGG - chr5_2:64469174-64469193 Msa0781840:intron 50.0%
GATGTCTCTGCATCACAACG+CGG - chr5_2:64469216-64469235 Msa0781840:intron 50.0%
AGTTGCTGCATGGCAGGAAT+AGG + chr5_2:64469543-64469562 None:intergenic 50.0%
TTCCTTGTGCAGTGGCTTGA+AGG + chr5_2:64469634-64469653 None:intergenic 50.0%
GTTCGACAGTAACAGACGAG+AGG - chr5_2:64469916-64469935 Msa0781840:intron 50.0%
GACAGTAACAGACGAGAGGA+GGG - chr5_2:64469920-64469939 Msa0781840:intron 50.0%
GGAGGGAACATCAACGTATG+AGG - chr5_2:64469937-64469956 Msa0781840:intron 50.0%
CGAGCCTGGCGAAAAATCGA+AGG - chr5_2:64468331-64468350 Msa0781840:intron 55.0%
!!! GGCTTCCGTTTTGGTCTTGG+AGG + chr5_2:64468764-64468783 None:intergenic 55.0%
CCTCAGTGGCTGTTCCAAGT+TGG + chr5_2:64468837-64468856 None:intergenic 55.0%
CCAACTTGGAACAGCCACTG+AGG - chr5_2:64468834-64468853 Msa0781840:CDS 55.0%
TGAGACCGGGGACAAACTTC+CGG + chr5_2:64468969-64468988 None:intergenic 55.0%
!! AGCACTGATGGATGAGACCG+GGG + chr5_2:64468981-64469000 None:intergenic 55.0%
!! CAGCACTGATGGATGAGACC+GGG + chr5_2:64468982-64469001 None:intergenic 55.0%
CATCACAACGCGGCCATGAT+TGG - chr5_2:64469226-64469245 Msa0781840:intron 55.0%
ACCACGCTGAAGTTGCTGCA+TGG + chr5_2:64469553-64469572 None:intergenic 55.0%
AGCCTTCAAGCCACTGCACA+AGG - chr5_2:64469629-64469648 Msa0781840:intron 55.0%
CGACAGTAACAGACGAGAGG+AGG - chr5_2:64469919-64469938 Msa0781840:intron 55.0%
CGCTGAAGTTGCTGCATGGC+AGG + chr5_2:64469549-64469568 None:intergenic 60.0%
GCCATGCAGCAACTTCAGCG+TGG - chr5_2:64469549-64469568 Msa0781840:intron 60.0%
CCACTGCACAAGGAACCCGA+GGG - chr5_2:64469639-64469658 Msa0781840:intron 60.0%
CGGGGACAAACTTCCGGCAG+GGG + chr5_2:64468963-64468982 None:intergenic 65.0%
CCGGGGACAAACTTCCGGCA+GGG + chr5_2:64468964-64468983 None:intergenic 65.0%
CCCTGCCGGAAGTTTGTCCC+CGG - chr5_2:64468961-64468980 Msa0781840:intron 65.0%
ACCGGGGACAAACTTCCGGC+AGG + chr5_2:64468965-64468984 None:intergenic 65.0%
GCCACTGCACAAGGAACCCG+AGG - chr5_2:64469638-64469657 Msa0781840:intron 65.0%
CCCTCGGGTTCCTTGTGCAG+TGG + chr5_2:64469642-64469661 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 64467166 64470427 64467166 ID=Msa0781840;Name=Msa0781840
chr5_2 mRNA 64467166 64470427 64467166 ID=Msa0781840-mRNA-1;Parent=Msa0781840;Name=Msa0781840-mRNA-1;_AED=0.08;_eAED=0.08;_QI=155|1|1|1|1|1|6|456|420
chr5_2 exon 64467166 64468200 64467166 ID=Msa0781840-mRNA-1:exon:19258;Parent=Msa0781840-mRNA-1
chr5_2 exon 64468476 64468889 64468476 ID=Msa0781840-mRNA-1:exon:19257;Parent=Msa0781840-mRNA-1
chr5_2 exon 64469049 64469110 64469049 ID=Msa0781840-mRNA-1:exon:19256;Parent=Msa0781840-mRNA-1
chr5_2 exon 64469241 64469352 64469241 ID=Msa0781840-mRNA-1:exon:19255;Parent=Msa0781840-mRNA-1
chr5_2 exon 64469479 64469562 64469479 ID=Msa0781840-mRNA-1:exon:19254;Parent=Msa0781840-mRNA-1
chr5_2 exon 64470261 64470427 64470261 ID=Msa0781840-mRNA-1:exon:19253;Parent=Msa0781840-mRNA-1
chr5_2 five_prime_UTR 64470273 64470427 64470273 ID=Msa0781840-mRNA-1:five_prime_utr;Parent=Msa0781840-mRNA-1
chr5_2 CDS 64470261 64470272 64470261 ID=Msa0781840-mRNA-1:cds;Parent=Msa0781840-mRNA-1
chr5_2 CDS 64469479 64469562 64469479 ID=Msa0781840-mRNA-1:cds;Parent=Msa0781840-mRNA-1
chr5_2 CDS 64469241 64469352 64469241 ID=Msa0781840-mRNA-1:cds;Parent=Msa0781840-mRNA-1
chr5_2 CDS 64469049 64469110 64469049 ID=Msa0781840-mRNA-1:cds;Parent=Msa0781840-mRNA-1
chr5_2 CDS 64468476 64468889 64468476 ID=Msa0781840-mRNA-1:cds;Parent=Msa0781840-mRNA-1
chr5_2 CDS 64467622 64468200 64467622 ID=Msa0781840-mRNA-1:cds;Parent=Msa0781840-mRNA-1
chr5_2 three_prime_UTR 64467166 64467621 64467166 ID=Msa0781840-mRNA-1:three_prime_utr;Parent=Msa0781840-mRNA-1
Gene Sequence

>Msa0781840

ATGGAGATTTTGGGTCAAAAAGAAGGAATGCATTCTGTTGTACATGTACAAAAACTACTTGATCAATTTTCATGTGGAAATGACCATGCCTTGAAGGCAAGGAAACCATATACTATCACAAAACAGAGAGAAAAGTGGACAGATGAAGAACATAAGAAGTTCCTTGAAGCTTTAAAGTTATATGGCCGAGCCTGGCGAAAAATCGAAGAACATGTTGGCACAAAGACTGCTGTGCAGATTCGAAGTCATGCTCAGAAGTTTTTTTCTAAGATCAATCGAGACACTGATGGGAATGACACAACAATGGTGGAGACAATTGAAATTCCACCTCCAAGACCAAAACGGAAGCCGATTCATCCTTACCCACGTAAAGTAGTTGAAATCGCAAAGAATGAAATCTCCAACTTGGAACAGCCACTGAGGTCTAATTCGCTTGTGTCGTTAGATTTTGGTAAAGAAAACAACTCTCCAAAGTCGGTATTATCTGCAGTTGCTTCAGAAACCCTTGGTTTCTCTGATTCAGATACCCCTGCCGGAAGTTTGTCCCCGGTCTCATCCATCAGTGCTGTCCATACCAGTAGATTTCCACTTCTTGAGTCCAAATCATCATCATCTGAGGAAGATCTGTCTCAACAAATAGATGAACTGAATACCGGTTCAACTCATGATGTACAACCTTTAATGAAACTGGAGCTTTTCCCTAAAGAATGTGTCGCAACCAACGAAGTAGCAGCAGAAGAATCACCTTGTCGAACTCTCAAACTTTTTGGAACAACTCTGTTAGTAAAAGATACCTGCAAGTCTTCTTCGACATCAATGGACACATCTGAACCTATTCCTGCCATGCAGCAACTTCAGCGTGGTTGTTCAGATATTAGTCTTGCAACTGTTGTTCCTTGGTGGACTATTTCAGACAATTCAGCCTTCAAGCCACTGCACAAGGAACCCGAGGGAAAACATCTACATTCAAATCATGAAGAATGCGAAGAAAAAGAGATTCAAAAGGAAGGATCTTCTTGTGTTGGTTCTAATAGCACTAGCTCAATGAATGATGAAGAAAGCAATGAAAGGTTAGACGATCAAGCCAAAAGTGATAATGTGAATTACTTTGTTGGCCACACTACACTAAGTGAAACAGTGAGACTTAAAACATTTGGAAAAGGGTTTGTACCATATAAAAGGTGCATGGCAGAAAGAGAAAGACAATGTTCGACAGTAACAGACGAGAGGAGGGAACATCAACGTATGAGGCTTTCCTTATAG

Protein sequence

>Msa0781840

MEILGQKEGMHSVVHVQKLLDQFSCGNDHALKARKPYTITKQREKWTDEEHKKFLEALKLYGRAWRKIEEHVGTKTAVQIRSHAQKFFSKINRDTDGNDTTMVETIEIPPPRPKRKPIHPYPRKVVEIAKNEISNLEQPLRSNSLVSLDFGKENNSPKSVLSAVASETLGFSDSDTPAGSLSPVSSISAVHTSRFPLLESKSSSSEEDLSQQIDELNTGSTHDVQPLMKLELFPKECVATNEVAAEESPCRTLKLFGTTLLVKDTCKSSSTSMDTSEPIPAMQQLQRGCSDISLATVVPWWTISDNSAFKPLHKEPEGKHLHSNHEECEEKEIQKEGSSCVGSNSTSSMNDEESNERLDDQAKSDNVNYFVGHTTLSETVRLKTFGKGFVPYKRCMAERERQCSTVTDERREHQRMRLSL*