AlfalfaGEDB | Msa0781840

M. sativa cultivar zhongmu-4 / Msa0781840

KEGG: -
GO: GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007275 GO:0007623 GO:0008150 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009734 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009755 GO:0009791 GO:0009845 GO:0009889 GO:0009909 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010600 GO:0010817 GO:0014070 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032350 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0042221 GO:0042493 GO:0046677 GO:0046885 GO:0048511 GO:0048580 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0080090 GO:0090351 GO:0090354 GO:0097159 GO:0097305 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2001141
PFAM: PF00249.34

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0781840	sp\|F4KGY6\|RVE1_ARATH	45.272	349	128	11	21	357	33	330	3.54e-54	187

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0781840	G7KFU7	96.190	420	16	0	1	420	1	420	0.0	783

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TFs/TRs:

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Gene ID	Type	Classification
Msa0781840	TF	MYB-related

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0736510	Msa0781840	0.841514	4.538467e-58	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0781840	MtrunA17_Chr5g0433851	96.190	420	16	0	1	420	1	420	0.0	783
Msa0781840	MtrunA17_Chr3g0109791	61.189	286	103	3	4	288	19	297	7.12e-103	309
Msa0781840	MtrunA17_Chr6g0481061	36.726	452	205	14	24	418	38	465	1.93e-55	190
Msa0781840	MtrunA17_Chr8g0348391	40.000	215	94	6	28	226	49	244	2.10e-34	130
Msa0781840	MtrunA17_Chr1g0181771	55.769	104	38	1	24	127	28	123	2.60e-34	129
Msa0781840	MtrunA17_Chr7g0276421	67.619	105	32	1	23	125	6	110	1.11e-32	130
Msa0781840	MtrunA17_Chr6g0469431	55.882	102	37	2	28	129	35	128	2.27e-31	119
Msa0781840	MtrunA17_Chr4g0030281	60.000	95	34	1	174	264	134	228	1.95e-23	102

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0781840	AT5G17300.1	45.272	349	128	11	21	357	33	330	3.60e-55	187
Msa0781840	AT5G37260.1	58.537	164	59	3	23	186	16	170	2.06e-44	156
Msa0781840	AT3G10113.1	44.105	229	104	6	28	245	50	265	1.78e-37	139
Msa0781840	AT1G18330.1	41.224	245	113	7	28	245	35	275	2.96e-37	139
Msa0781840	AT1G18330.2	41.224	245	113	7	28	245	61	301	5.38e-37	139
Msa0781840	AT2G46830.1	61.798	89	34	0	20	108	1	89	2.89e-32	129
Msa0781840	AT3G09600.1	58.586	99	33	2	32	130	32	122	5.33e-32	123
Msa0781840	AT3G09600.7	58.586	99	33	2	32	130	32	122	5.33e-32	123
Msa0781840	AT3G09600.2	58.586	99	33	2	32	130	32	122	5.94e-32	123
Msa0781840	AT3G09600.6	58.586	99	33	2	32	130	32	122	5.94e-32	123

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Find 101 sgRNAs with CRISPR-Local

Find 193 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTTTGAGAGTTCGACA+AGG	0.741043	5_2:+64468118	None:intergenic
AAAGAATGAAATCTCCAACT+TGG	0.596383	5_2:-64468751	Msa0781840:CDS
AAGGAAGGATCTTCTTGTGT+TGG	0.490240	5_2:-64467860	Msa0781840:CDS
AAGGGAGAACCTTCAAGGCA+TGG	0.608656	5_2:+64469469	None:intergenic
AAGGGTTTGTACCATATAAA+AGG	0.320529	5_2:-64467703	Msa0781840:CDS
AATACAAAAGCCTGCCACTT+TGG	0.489088	5_2:+64467389	None:intergenic
ACAAGCGAATTAGACCTCAG+TGG	0.788179	5_2:+64468723	None:intergenic
ACAGCACTGATGGATGAGAC+CGG	0.582260	5_2:+64468591	None:intergenic
ACAGTGAGACTTAAAACATT+TGG	0.363877	5_2:-64467728	Msa0781840:CDS
ACCACGCTGAAGTTGCTGCA+TGG	0.627773	5_2:+64468021	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATAGTTGAAGAAAAACACG+AGG	+	chr5_2:64467208-64467227	None:intergenic	30.0%
ATCACTTGATTCTGATTCTA+TGG	-	chr5_2:64467302-64467321	Msa0781840:three_prime_UTR	30.0%
CAAATAACAACCTTAATCTC+AGG	+	chr5_2:64467454-64467473	None:intergenic	30.0%
AGAATATACCTAGCTAAACA+AGG	-	chr5_2:64467679-64467698	Msa0781840:CDS	30.0%
CAAAGTTAGTTACAAGGTTA+AGG	+	chr5_2:64467705-64467724	None:intergenic	30.0%
ACTCAACAAAGTTAGTTACA+AGG	+	chr5_2:64467711-64467730	None:intergenic	30.0%
GACTAAAATCATAACCAGAA+AGG	+	chr5_2:64467917-64467936	None:intergenic	30.0%
AAAGATTCTTCTTGCAAAAG+AGG	-	chr5_2:64468397-64468416	Msa0781840:intron	30.0%
ATGTTCTGTGGTGAAAATAA+AGG	+	chr5_2:64468468-64468487	None:intergenic	30.0%
AAAGAATGAAATCTCCAACT+TGG	-	chr5_2:64468820-64468839	Msa0781840:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_2	gene	64467166	64470427	64467166	ID=Msa0781840;Name=Msa0781840
chr5_2	mRNA	64467166	64470427	64467166	ID=Msa0781840-mRNA-1;Parent=Msa0781840;Name=Msa0781840-mRNA-1;_AED=0.08;_eAED=0.08;_QI=155\|1\|1\|1\|1\|1\|6\|456\|420
chr5_2	exon	64467166	64468200	64467166	ID=Msa0781840-mRNA-1:exon:19258;Parent=Msa0781840-mRNA-1
chr5_2	exon	64468476	64468889	64468476	ID=Msa0781840-mRNA-1:exon:19257;Parent=Msa0781840-mRNA-1
chr5_2	exon	64469049	64469110	64469049	ID=Msa0781840-mRNA-1:exon:19256;Parent=Msa0781840-mRNA-1
chr5_2	exon	64469241	64469352	64469241	ID=Msa0781840-mRNA-1:exon:19255;Parent=Msa0781840-mRNA-1
chr5_2	exon	64469479	64469562	64469479	ID=Msa0781840-mRNA-1:exon:19254;Parent=Msa0781840-mRNA-1
chr5_2	exon	64470261	64470427	64470261	ID=Msa0781840-mRNA-1:exon:19253;Parent=Msa0781840-mRNA-1
chr5_2	five_prime_UTR	64470273	64470427	64470273	ID=Msa0781840-mRNA-1:five_prime_utr;Parent=Msa0781840-mRNA-1
chr5_2	CDS	64470261	64470272	64470261	ID=Msa0781840-mRNA-1:cds;Parent=Msa0781840-mRNA-1
chr5_2	CDS	64469479	64469562	64469479	ID=Msa0781840-mRNA-1:cds;Parent=Msa0781840-mRNA-1
chr5_2	CDS	64469241	64469352	64469241	ID=Msa0781840-mRNA-1:cds;Parent=Msa0781840-mRNA-1
chr5_2	CDS	64469049	64469110	64469049	ID=Msa0781840-mRNA-1:cds;Parent=Msa0781840-mRNA-1
chr5_2	CDS	64468476	64468889	64468476	ID=Msa0781840-mRNA-1:cds;Parent=Msa0781840-mRNA-1
chr5_2	CDS	64467622	64468200	64467622	ID=Msa0781840-mRNA-1:cds;Parent=Msa0781840-mRNA-1
chr5_2	three_prime_UTR	64467166	64467621	64467166	ID=Msa0781840-mRNA-1:three_prime_utr;Parent=Msa0781840-mRNA-1

Gene Sequence

>Msa0781840

ATGGAGATTTTGGGTCAAAAAGAAGGAATGCATTCTGTTGTACATGTACAAAAACTACTTGATCAATTTTCATGTGGAAATGACCATGCCTTGAAGGCAAGGAAACCATATACTATCACAAAACAGAGAGAAAAGTGGACAGATGAAGAACATAAGAAGTTCCTTGAAGCTTTAAAGTTATATGGCCGAGCCTGGCGAAAAATCGAAGAACATGTTGGCACAAAGACTGCTGTGCAGATTCGAAGTCATGCTCAGAAGTTTTTTTCTAAGATCAATCGAGACACTGATGGGAATGACACAACAATGGTGGAGACAATTGAAATTCCACCTCCAAGACCAAAACGGAAGCCGATTCATCCTTACCCACGTAAAGTAGTTGAAATCGCAAAGAATGAAATCTCCAACTTGGAACAGCCACTGAGGTCTAATTCGCTTGTGTCGTTAGATTTTGGTAAAGAAAACAACTCTCCAAAGTCGGTATTATCTGCAGTTGCTTCAGAAACCCTTGGTTTCTCTGATTCAGATACCCCTGCCGGAAGTTTGTCCCCGGTCTCATCCATCAGTGCTGTCCATACCAGTAGATTTCCACTTCTTGAGTCCAAATCATCATCATCTGAGGAAGATCTGTCTCAACAAATAGATGAACTGAATACCGGTTCAACTCATGATGTACAACCTTTAATGAAACTGGAGCTTTTCCCTAAAGAATGTGTCGCAACCAACGAAGTAGCAGCAGAAGAATCACCTTGTCGAACTCTCAAACTTTTTGGAACAACTCTGTTAGTAAAAGATACCTGCAAGTCTTCTTCGACATCAATGGACACATCTGAACCTATTCCTGCCATGCAGCAACTTCAGCGTGGTTGTTCAGATATTAGTCTTGCAACTGTTGTTCCTTGGTGGACTATTTCAGACAATTCAGCCTTCAAGCCACTGCACAAGGAACCCGAGGGAAAACATCTACATTCAAATCATGAAGAATGCGAAGAAAAAGAGATTCAAAAGGAAGGATCTTCTTGTGTTGGTTCTAATAGCACTAGCTCAATGAATGATGAAGAAAGCAATGAAAGGTTAGACGATCAAGCCAAAAGTGATAATGTGAATTACTTTGTTGGCCACACTACACTAAGTGAAACAGTGAGACTTAAAACATTTGGAAAAGGGTTTGTACCATATAAAAGGTGCATGGCAGAAAGAGAAAGACAATGTTCGACAGTAACAGACGAGAGGAGGGAACATCAACGTATGAGGCTTTCCTTATAG

Protein sequence

>Msa0781840

MEILGQKEGMHSVVHVQKLLDQFSCGNDHALKARKPYTITKQREKWTDEEHKKFLEALKLYGRAWRKIEEHVGTKTAVQIRSHAQKFFSKINRDTDGNDTTMVETIEIPPPRPKRKPIHPYPRKVVEIAKNEISNLEQPLRSNSLVSLDFGKENNSPKSVLSAVASETLGFSDSDTPAGSLSPVSSISAVHTSRFPLLESKSSSSEEDLSQQIDELNTGSTHDVQPLMKLELFPKECVATNEVAAEESPCRTLKLFGTTLLVKDTCKSSSTSMDTSEPIPAMQQLQRGCSDISLATVVPWWTISDNSAFKPLHKEPEGKHLHSNHEECEEKEIQKEGSSCVGSNSTSSMNDEESNERLDDQAKSDNVNYFVGHTTLSETVRLKTFGKGFVPYKRCMAERERQCSTVTDERREHQRMRLSL*