AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0737250

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0737250 MtrunA17_Chr5g0434911 96.014 276 11 0 1 276 1 276 0.0 548
Msa0737250 MtrunA17_Chr5g0434931 65.517 261 72 6 18 270 32 282 4.21e-107 311
Msa0737250 MtrunA17_Chr5g0434841 56.289 318 84 10 1 268 1 313 3.73e-102 300
Msa0737250 MtrunA17_Chr7g0228991 63.320 259 79 7 19 272 27 274 5.37e-102 298
Msa0737250 MtrunA17_Chr7g0220341 58.545 275 90 7 9 272 13 274 1.95e-101 297
Msa0737250 MtrunA17_Chr5g0434831 74.033 181 41 3 17 192 3 182 1.78e-85 253
Msa0737250 MtrunA17_Chr8g0360111 56.410 273 87 6 8 272 12 260 5.76e-84 252
Msa0737250 MtrunA17_Chr7g0229101 53.333 225 80 6 53 272 4 208 3.95e-59 187
Msa0737250 MtrunA17_Chr7g0240821 63.235 136 46 1 25 160 5 136 6.74e-58 184
Msa0737250 MtrunA17_Chr5g0434901 79.279 111 22 1 55 165 7 116 2.47e-51 164
Msa0737250 MtrunA17_Chr4g0070611 56.115 139 61 0 20 158 11 149 7.85e-51 169
Msa0737250 MtrunA17_Chr4g0070641 56.115 139 61 0 20 158 11 149 9.11e-51 164
Msa0737250 MtrunA17_Chr7g0229131 54.658 161 59 4 53 212 4 151 2.07e-50 163
Msa0737250 MtrunA17_Chr4g0055981 57.812 128 53 1 21 148 55 181 3.66e-46 154
Msa0737250 MtrunA17_Chr3g0121241 60.550 109 43 0 20 128 41 149 4.65e-46 156
Msa0737250 MtrunA17_Chr7g0274581 63.208 106 39 0 20 125 11 116 1.03e-45 152
Msa0737250 MtrunA17_Chr8g0346561 62.264 106 40 0 20 125 11 116 1.41e-43 150
Msa0737250 MtrunA17_Chr1g0187761 54.098 122 54 1 20 139 11 132 3.04e-43 148
Msa0737250 MtrunA17_Chr5g0435101 60.377 106 42 0 21 126 11 116 3.26e-43 146
Msa0737250 MtrunA17_Chr7g0275911 57.658 111 47 0 20 130 11 121 4.19e-43 147
Msa0737250 MtrunA17_Chr5g0434891 58.015 131 45 3 86 212 1 125 4.89e-43 144
Msa0737250 MtrunA17_Chr3g0131121 51.493 134 65 0 23 156 14 147 8.36e-43 148
Msa0737250 MtrunA17_Chr8g0343831 64.762 105 37 0 21 125 8 112 1.76e-42 145
Msa0737250 MtrunA17_Chr4g0037141 47.239 163 75 2 23 185 14 165 1.76e-42 147
Msa0737250 MtrunA17_Chr4g0022931 53.383 133 60 1 17 147 9 141 1.98e-42 146
Msa0737250 MtrunA17_Chr4g0022911 49.296 142 69 1 17 158 9 147 5.63e-42 145
Msa0737250 MtrunA17_Chr1g0167661 35.246 244 141 5 19 260 10 238 6.22e-42 144
Msa0737250 MtrunA17_Chr7g0261281 54.237 118 54 0 20 137 11 128 1.56e-41 144
Msa0737250 MtrunA17_Chr2g0323351 51.111 135 65 1 20 153 11 145 1.95e-41 143
Msa0737250 MtrunA17_Chr4g0022901 58.182 110 46 0 17 126 9 118 2.01e-41 144
Msa0737250 MtrunA17_Chr1g0167691 54.630 108 49 0 19 126 10 117 2.33e-41 143
Msa0737250 MtrunA17_Chr4g0048511 57.273 110 47 0 17 126 9 118 2.91e-41 145
Msa0737250 MtrunA17_Chr1g0203411 52.800 125 59 0 20 144 11 135 4.40e-41 143
Msa0737250 MtrunA17_Chr2g0281071 57.273 110 47 0 17 126 9 118 5.52e-41 144
Msa0737250 MtrunA17_Chr5g0395281 57.009 107 46 0 20 126 11 117 8.57e-41 143
Msa0737250 MtrunA17_Chr3g0115821 57.944 107 45 0 20 126 11 117 9.47e-41 144
Msa0737250 MtrunA17_Chr7g0217221 59.434 106 43 0 20 125 11 116 2.50e-40 140
Msa0737250 MtrunA17_Chr3g0092401 54.472 123 56 0 20 142 12 134 5.15e-40 141
Msa0737250 MtrunA17_Chr4g0044421 58.491 106 44 0 23 128 14 119 6.80e-40 137
Msa0737250 MtrunA17_Chr4g0039971 56.075 107 47 0 20 126 12 118 1.38e-39 141
Msa0737250 MtrunA17_Chr4g0042671 54.545 121 54 1 20 140 11 130 2.50e-39 141
Msa0737250 MtrunA17_Chr5g0410961 57.944 107 45 0 20 126 11 117 4.94e-39 139
Msa0737250 MtrunA17_Chr2g0323411 57.009 107 46 0 20 126 11 117 6.25e-39 138
Msa0737250 MtrunA17_Chr4g0060721 57.547 106 45 0 20 125 12 117 1.73e-38 137
Msa0737250 MtrunA17_Chr4g0068061 55.660 106 47 0 20 125 11 116 2.47e-38 137
Msa0737250 MtrunA17_Chr7g0217741 56.075 107 47 0 20 126 11 117 3.77e-38 136
Msa0737250 MtrunA17_Chr7g0254411 56.604 106 46 0 20 125 11 116 1.11e-37 135
Msa0737250 MtrunA17_Chr5g0400821 53.043 115 53 1 21 134 12 126 1.92e-37 134
Msa0737250 MtrunA17_Chr4g0022881 54.808 104 47 0 20 123 11 114 2.21e-37 132
Msa0737250 MtrunA17_Chr7g0270891 57.143 105 45 0 21 125 12 116 2.48e-37 135
Msa0737250 MtrunA17_Chr4g0058631 47.826 138 57 1 21 143 12 149 3.80e-37 134
Msa0737250 MtrunA17_Chr6g0452271 55.660 106 47 0 21 126 12 117 4.23e-37 134
Msa0737250 MtrunA17_Chr8g0385321 53.774 106 49 0 23 128 14 119 5.04e-37 133
Msa0737250 MtrunA17_Chr6g0453471 56.075 107 47 0 20 126 11 117 5.52e-37 134
Msa0737250 MtrunA17_Chr3g0117091 34.137 249 143 4 16 247 7 251 5.87e-37 134
Msa0737250 MtrunA17_Chr3g0103281 56.190 105 46 0 21 125 12 116 8.76e-37 133
Msa0737250 MtrunA17_Chr1g0193801 56.190 105 46 0 21 125 12 116 1.29e-36 134
Msa0737250 MtrunA17_Chr4g0022891 51.304 115 54 1 20 134 11 123 1.74e-36 130
Msa0737250 MtrunA17_Chr1g0152011 50.427 117 57 1 21 136 12 128 2.68e-36 132
Msa0737250 MtrunA17_Chr1g0211161 44.595 148 64 2 21 153 13 157 2.78e-36 129
Msa0737250 MtrunA17_Chr6g0453211 58.416 101 42 0 20 120 11 111 3.70e-36 131
Msa0737250 MtrunA17_Chr1g0203441 52.542 118 55 1 13 130 6 122 4.01e-36 130
Msa0737250 MtrunA17_Chr6g0470971 52.137 117 56 0 14 130 7 123 5.77e-36 129
Msa0737250 MtrunA17_Chr1g0194951 40.000 170 96 3 20 189 11 174 6.25e-36 132
Msa0737250 MtrunA17_Chr3g0135311 53.913 115 50 2 21 132 12 126 6.90e-36 131
Msa0737250 MtrunA17_Chr1g0193371 55.238 105 47 0 21 125 12 116 1.00e-35 131
Msa0737250 MtrunA17_Chr8g0349261 52.778 108 50 1 20 126 12 119 1.43e-35 129
Msa0737250 MtrunA17_Chr8g0342541 51.304 115 56 0 12 126 3 117 1.58e-35 130
Msa0737250 MtrunA17_Chr2g0330041 50.427 117 58 0 12 128 3 119 1.71e-35 131
Msa0737250 MtrunA17_Chr4g0057031 55.140 107 48 0 20 126 11 117 1.75e-35 128
Msa0737250 MtrunA17_Chr8g0342521 51.818 110 53 0 19 128 10 119 3.34e-35 129
Msa0737250 MtrunA17_Chr1g0151941 51.852 108 51 1 21 127 12 119 4.51e-35 126
Msa0737250 MtrunA17_Chr5g0417821 48.387 124 63 1 16 139 2 124 1.50e-34 126
Msa0737250 MtrunA17_Chr4g0028311 53.636 110 50 1 21 129 12 121 1.52e-34 127
Msa0737250 MtrunA17_Chr3g0088461 49.600 125 58 3 2 125 6 126 2.23e-34 127
Msa0737250 MtrunA17_Chr2g0328771 52.381 105 50 0 21 125 20 124 2.47e-34 126
Msa0737250 MtrunA17_Chr4g0032401 33.628 226 135 3 21 246 17 227 3.24e-34 126
Msa0737250 MtrunA17_Chr7g0264641 54.630 108 48 1 21 127 12 119 3.67e-34 124
Msa0737250 MtrunA17_Chr4g0054391 38.071 197 101 5 21 201 12 203 4.47e-34 125
Msa0737250 MtrunA17_Chr8g0387421 52.381 105 50 0 21 125 12 116 4.92e-34 125
Msa0737250 MtrunA17_Chr7g0271241 59.184 98 40 0 21 118 12 109 6.77e-34 126
Msa0737250 MtrunA17_Chr3g0110351 55.660 106 47 0 20 125 11 116 1.31e-33 124
Msa0737250 MtrunA17_Chr1g0186061 55.340 103 46 0 22 124 21 123 1.52e-33 122
Msa0737250 MtrunA17_Chr1g0209661 53.846 104 48 0 21 124 27 130 1.58e-33 124
Msa0737250 MtrunA17_Chr8g0342481 53.704 108 49 1 21 127 12 119 1.69e-33 125
Msa0737250 MtrunA17_Chr2g0309911 49.074 108 55 0 21 128 11 118 1.89e-33 124
Msa0737250 MtrunA17_Chr7g0228891 52.830 106 50 0 20 125 11 116 2.42e-33 122
Msa0737250 MtrunA17_Chr2g0327351 58.000 100 41 1 21 119 12 111 2.74e-33 123
Msa0737250 MtrunA17_Chr2g0311221 52.000 100 48 0 21 120 14 113 4.92e-33 123
Msa0737250 MtrunA17_Chr5g0434571 54.717 106 48 0 20 125 47 152 6.00e-33 123
Msa0737250 MtrunA17_Chr6g0487491 51.724 116 47 2 21 127 12 127 1.36e-32 120
Msa0737250 MtrunA17_Chr1g0168661 54.369 103 47 0 22 124 22 124 2.23e-32 119
Msa0737250 MtrunA17_Chr3g0080861 49.038 104 53 0 21 124 37 140 3.38e-32 124
Msa0737250 MtrunA17_Chr7g0228231 47.200 125 61 1 16 140 9 128 3.78e-32 117
Msa0737250 MtrunA17_Chr4g0072751 56.000 100 43 1 21 119 12 111 4.21e-32 121
Msa0737250 MtrunA17_Chr7g0269831 51.852 108 52 0 20 127 11 118 4.41e-32 121
Msa0737250 MtrunA17_Chr2g0327821 48.624 109 56 0 21 129 6 114 7.72e-32 117
Msa0737250 MtrunA17_Chr5g0397231 49.074 108 55 0 12 119 3 110 9.86e-32 120
Msa0737250 MtrunA17_Chr1g0194291 52.727 110 52 0 15 124 15 124 2.17e-31 117
Msa0737250 MtrunA17_Chr3g0099131 48.077 104 54 0 21 124 41 144 2.54e-31 121
Msa0737250 MtrunA17_Chr6g0450101 50.000 110 55 0 16 125 9 118 3.56e-31 115
Msa0737250 MtrunA17_Chr1g0194301 46.218 119 64 0 6 124 18 136 3.96e-31 117
Msa0737250 MtrunA17_Chr1g0180391 47.748 111 58 0 21 131 19 129 1.68e-30 114
Msa0737250 MtrunA17_Chr8g0354661 47.706 109 55 1 18 124 32 140 2.92e-30 119
Msa0737250 MtrunA17_Chr1g0154031 48.077 104 54 0 21 124 76 179 1.10e-29 115
Msa0737250 MtrunA17_Chr2g0322521 48.571 105 54 0 20 124 28 132 1.23e-29 115
Msa0737250 MtrunA17_Chr5g0434871 87.143 70 9 0 83 152 2 71 1.36e-29 106
Msa0737250 MtrunA17_Chr1g0192411 46.789 109 58 0 16 124 7 115 1.87e-29 115
Msa0737250 MtrunA17_Chr4g0030881 45.378 119 55 2 22 133 8 123 6.24e-29 110
Msa0737250 MtrunA17_Chr5g0440781 45.192 104 56 1 21 123 12 115 2.30e-27 104
Msa0737250 MtrunA17_Chr5g0395221 57.692 78 33 0 20 97 11 88 4.31e-27 100
Msa0737250 MtrunA17_Chr4g0068921 51.456 103 50 0 21 123 24 126 6.19e-27 103
Msa0737250 MtrunA17_Chr5g0440761 45.192 104 56 1 21 123 12 115 8.24e-27 105
Msa0737250 MtrunA17_Chr5g0441141 45.192 104 56 1 21 123 12 115 1.08e-26 105
Msa0737250 MtrunA17_Chr2g0293911 51.456 103 50 0 21 123 24 126 1.56e-26 105
Msa0737250 MtrunA17_Chr7g0247131 46.296 108 53 2 53 160 10 112 1.93e-26 104
Msa0737250 MtrunA17_Chr2g0323321 53.659 82 38 0 20 101 10 91 6.65e-26 98.6
Msa0737250 MtrunA17_Chr5g0441131 41.964 112 64 1 13 123 1 112 9.22e-26 100
Msa0737250 MtrunA17_Chr4g0042611 57.143 77 33 0 21 97 12 88 7.48e-25 95.1
Msa0737250 MtrunA17_Chr4g0008551 40.741 108 63 1 23 130 38 144 1.82e-24 100
Msa0737250 MtrunA17_Chr4g0053431 44.118 102 56 1 23 124 5 105 2.54e-24 98.6
Msa0737250 MtrunA17_Chr5g0429661 41.964 112 64 1 23 134 122 232 3.24e-24 100
Msa0737250 MtrunA17_Chr4g0042501 43.137 102 57 1 23 124 105 205 3.59e-24 100
Msa0737250 MtrunA17_Chr8g0342531 44.762 105 53 1 21 120 12 116 3.86e-24 95.5
Msa0737250 MtrunA17_Chr5g0417621 43.137 102 57 1 23 124 134 234 5.03e-24 100
Msa0737250 MtrunA17_Chr5g0401731 37.302 126 78 1 23 148 15 139 7.53e-24 98.6
Msa0737250 MtrunA17_Chr2g0294811 50.000 82 41 0 20 101 11 92 1.36e-23 92.8
Msa0737250 MtrunA17_Chr6g0480581 43.299 97 54 1 23 119 4 99 1.67e-23 95.9
Msa0737250 MtrunA17_Chr3g0133601 44.118 102 56 1 23 124 37 137 2.00e-23 95.5
Msa0737250 MtrunA17_Chr8g0334881 42.609 115 63 2 15 128 4 116 3.15e-23 96.7
Msa0737250 MtrunA17_Chr1g0157731 40.952 105 61 1 23 127 91 194 6.11e-23 98.2
Msa0737250 MtrunA17_Chr3g0139671 40.952 105 61 1 23 127 85 188 6.50e-23 98.2
Msa0737250 MtrunA17_Chr8g0342511 50.588 85 42 0 12 96 3 87 8.61e-23 90.1
Msa0737250 MtrunA17_Chr3g0117511 41.964 112 62 2 23 133 183 292 9.64e-23 97.1
Msa0737250 MtrunA17_Chr3g0125801 38.889 126 71 2 18 143 11 130 1.06e-22 94.7
Msa0737250 MtrunA17_Chr4g0013361 42.609 115 63 3 13 125 1 114 1.39e-22 94.7
Msa0737250 MtrunA17_Chr3g0099141 46.988 83 44 0 21 103 40 122 2.05e-22 90.5
Msa0737250 MtrunA17_Chr7g0254261 44.118 102 56 1 23 124 89 189 3.07e-22 94.7
Msa0737250 MtrunA17_Chr4g0058991 40.367 109 62 2 21 128 207 313 4.88e-22 95.1
Msa0737250 MtrunA17_Chr6g0454921 41.284 109 55 2 23 127 15 118 6.50e-22 90.9
Msa0737250 MtrunA17_Chr7g0238631 41.748 103 59 1 23 125 113 214 1.64e-21 94.0
Msa0737250 MtrunA17_Chr7g0238631 34.000 100 64 2 23 121 61 159 9.26e-12 65.1
Msa0737250 MtrunA17_Chr7g0228531 40.000 115 67 2 15 129 212 324 1.67e-21 93.2
Msa0737250 MtrunA17_Chr8g0342461 47.778 90 46 1 10 98 1 90 3.17e-21 87.0
Msa0737250 MtrunA17_Chr6g0460661 42.268 97 55 1 23 119 16 111 6.37e-21 87.0
Msa0737250 MtrunA17_Chr8g0342471 46.667 90 47 1 10 98 1 90 1.24e-20 85.5
Msa0737250 MtrunA17_Chr7g0238651 43.564 101 55 1 26 124 10 110 1.86e-20 89.7
Msa0737250 MtrunA17_Chr6g0460671 38.525 122 74 1 3 124 79 199 1.94e-20 89.4
Msa0737250 MtrunA17_Chr5g0434881 89.744 39 4 0 17 55 3 41 8.67e-20 80.5
Msa0737250 MtrunA17_Chr3g0093811 50.685 73 36 0 53 125 14 86 4.72e-19 84.3
Msa0737250 MtrunA17_Chr5g0425591 41.758 91 52 1 13 102 1 91 6.01e-19 79.7
Msa0737250 MtrunA17_Chr5g0437321 38.835 103 54 2 23 121 19 116 2.19e-18 82.8
Msa0737250 MtrunA17_Chr7g0228401 41.573 89 51 1 34 122 290 377 7.56e-17 80.1
Msa0737250 MtrunA17_Chr5g0397841 35.238 105 67 1 14 118 101 204 1.38e-16 79.3
Msa0737250 MtrunA17_Chr6g0453751 41.935 93 45 2 19 102 18 110 1.75e-16 74.3
Msa0737250 MtrunA17_Chr7g0228481 36.111 108 67 2 15 122 212 317 8.38e-16 76.6
Msa0737250 MtrunA17_Chr1g0177901 45.455 77 38 1 57 129 27 103 3.05e-15 72.8
Msa0737250 MtrunA17_Chr2g0322831 66.667 39 13 0 79 117 34 72 1.23e-14 67.8
Msa0737250 MtrunA17_Chr5g0416341 34.188 117 76 1 8 124 11 126 1.92e-14 72.8
Msa0737250 MtrunA17_Chr7g0233061 32.308 130 85 2 16 145 173 299 2.55e-14 72.0
Msa0737250 MtrunA17_Chr8g0362231 33.051 118 77 2 8 124 6 122 5.67e-13 68.6
Msa0737250 MtrunA17_Chr3g0104491 33.333 87 52 2 62 142 1 87 9.69e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0737250 AT1G66370.1 52.995 217 75 5 19 221 6 209 7.16e-64 201
Msa0737250 AT1G66390.1 52.679 224 75 6 13 221 1 208 2.59e-55 179
Msa0737250 AT1G56650.1 49.367 237 90 7 13 237 1 219 1.63e-54 177
Msa0737250 AT1G66380.1 79.464 112 22 1 13 124 1 111 9.39e-53 169
Msa0737250 AT3G13540.1 45.405 185 85 4 3 183 1 173 8.73e-49 162
Msa0737250 AT5G14750.1 56.637 113 49 0 22 134 17 129 1.06e-43 147
Msa0737250 AT5G40330.1 60.577 104 41 0 22 125 13 116 1.32e-43 148
Msa0737250 AT1G22640.1 61.321 106 41 0 23 128 14 119 2.50e-43 148
Msa0737250 AT4G38620.1 53.226 124 58 0 23 146 14 137 7.59e-43 148
Msa0737250 AT4G09460.1 42.938 177 95 2 23 198 14 185 9.42e-43 146
Msa0737250 AT3G27920.1 60.000 105 42 0 22 126 15 119 1.57e-42 145
Msa0737250 AT5G16770.4 39.378 193 108 2 20 212 11 194 1.66e-42 148
Msa0737250 AT5G16770.3 39.378 193 108 2 20 212 11 194 1.66e-42 148
Msa0737250 AT5G16770.1 39.378 193 108 2 20 212 11 194 2.78e-42 148
Msa0737250 AT5G16770.2 39.378 193 108 2 20 212 11 194 2.78e-42 148
Msa0737250 AT5G52600.1 58.261 115 48 0 21 135 12 126 5.93e-42 143
Msa0737250 AT2G16720.1 59.434 106 43 0 23 128 14 119 1.10e-41 144
Msa0737250 AT5G35550.1 53.788 132 51 2 13 139 1 127 3.26e-41 143
Msa0737250 AT3G23250.1 50.794 126 56 1 20 139 11 136 4.46e-41 143
Msa0737250 AT3G02940.2 57.944 107 45 0 20 126 11 117 8.87e-41 143
Msa0737250 AT4G21440.1 58.879 107 44 0 20 126 11 117 9.44e-41 144
Msa0737250 AT3G02940.1 57.944 107 45 0 20 126 11 117 1.64e-40 143
Msa0737250 AT3G02940.3 57.944 107 45 0 20 126 11 117 1.64e-40 143
Msa0737250 AT4G28110.1 33.577 274 161 6 20 275 11 281 2.45e-40 141
Msa0737250 AT4G17785.2 59.259 108 44 0 19 126 11 118 2.92e-40 143
Msa0737250 AT4G17785.1 59.259 108 44 0 19 126 11 118 3.21e-40 143
Msa0737250 AT3G61250.1 52.991 117 55 0 20 136 11 127 4.57e-40 141
Msa0737250 AT5G60890.1 41.573 178 98 2 17 188 8 185 5.78e-40 140
Msa0737250 AT5G10280.1 55.856 111 49 0 16 126 7 117 7.25e-40 141
Msa0737250 AT4G34990.1 57.547 106 45 0 23 128 14 119 1.19e-39 139
Msa0737250 AT1G74080.1 53.571 112 52 0 17 128 8 119 1.32e-39 140
Msa0737250 AT3G47600.1 60.377 106 42 0 20 125 11 116 1.37e-39 140
Msa0737250 AT5G54230.1 58.491 106 44 0 21 126 12 117 1.75e-39 140
Msa0737250 AT1G35515.1 39.227 181 99 2 21 200 12 182 2.33e-39 137
Msa0737250 AT4G05100.1 55.455 110 49 0 17 126 9 118 3.09e-39 139
Msa0737250 AT5G61420.2 55.963 109 48 0 20 128 11 119 3.23e-39 140
Msa0737250 AT1G18570.1 55.046 109 49 0 20 128 12 120 3.54e-39 140
Msa0737250 AT5G07690.1 55.963 109 48 0 20 128 11 119 3.81e-39 139
Msa0737250 AT5G15310.1 51.969 127 57 1 20 142 11 137 4.12e-39 139
Msa0737250 AT5G07700.1 51.145 131 57 1 20 143 11 141 5.02e-39 139
Msa0737250 AT5G07700.2 51.145 131 57 1 20 143 11 141 5.02e-39 139
Msa0737250 AT5G15310.2 51.969 127 57 1 20 142 11 137 6.07e-39 139
Msa0737250 AT5G65230.1 54.955 111 50 0 16 126 7 117 6.63e-39 138
Msa0737250 AT5G15310.4 51.969 127 57 1 20 142 11 137 6.76e-39 136
Msa0737250 AT2G31180.1 56.604 106 46 0 20 125 11 116 1.36e-38 136
Msa0737250 AT1G06180.1 56.604 106 46 0 20 125 11 116 1.44e-38 135
Msa0737250 AT1G74650.1 57.798 109 46 0 21 129 12 120 1.63e-38 138
Msa0737250 AT5G62470.2 55.172 116 52 0 20 135 11 126 1.95e-38 138
Msa0737250 AT3G28910.1 59.434 106 43 0 20 125 11 116 2.45e-38 137
Msa0737250 AT3G01140.2 45.070 142 78 0 20 161 11 152 2.59e-38 137
Msa0737250 AT4G01680.3 57.407 108 46 0 21 128 12 119 4.18e-38 134
Msa0737250 AT3G01140.1 45.070 142 78 0 20 161 54 195 5.14e-38 138
Msa0737250 AT5G49330.1 54.630 108 49 0 20 127 11 118 5.54e-38 137
Msa0737250 AT3G30210.1 49.635 137 68 1 20 156 26 161 7.47e-38 135
Msa0737250 AT5G57620.1 57.143 112 47 1 21 131 12 123 1.30e-37 135
Msa0737250 AT4G01680.1 57.407 108 46 0 21 128 12 119 1.34e-37 135
Msa0737250 AT1G34670.1 56.075 107 47 0 20 126 11 117 2.96e-37 135
Msa0737250 AT5G56110.1 58.095 105 44 0 21 125 12 116 3.30e-37 134
Msa0737250 AT1G08810.1 56.604 106 46 0 20 125 11 116 3.59e-37 133
Msa0737250 AT1G16490.1 52.336 107 51 0 21 127 14 120 6.75e-37 132
Msa0737250 AT5G62470.1 55.172 116 51 1 20 135 11 125 7.68e-37 134
Msa0737250 AT1G57560.2 54.630 108 49 0 21 128 12 119 8.73e-37 132
Msa0737250 AT1G57560.1 54.630 108 49 0 21 128 12 119 1.06e-36 132
Msa0737250 AT3G62610.1 54.717 106 48 0 20 125 11 116 1.33e-36 133
Msa0737250 AT4G37780.1 43.038 158 85 3 20 172 11 168 1.37e-36 132
Msa0737250 AT2G47460.1 52.830 106 50 0 20 125 11 116 1.42e-36 134
Msa0737250 AT5G65790.1 50.407 123 60 1 21 142 12 134 1.63e-36 134
Msa0737250 AT3G49690.1 53.097 113 52 1 21 132 12 124 2.62e-36 131
Msa0737250 AT3G13890.2 54.206 107 49 0 21 127 12 118 3.93e-36 132
Msa0737250 AT5G26660.1 56.190 105 46 0 21 125 12 116 4.14e-36 132
Msa0737250 AT1G74430.1 52.294 109 52 0 20 128 11 119 4.28e-36 130
Msa0737250 AT1G09540.1 53.704 108 50 0 21 128 12 119 1.33e-35 131
Msa0737250 AT5G23000.1 57.009 107 45 1 21 126 12 118 1.52e-35 130
Msa0737250 AT1G66380.2 74.157 89 22 1 13 101 1 88 1.88e-35 123
Msa0737250 AT1G79180.1 50.943 106 52 0 21 126 14 119 4.25e-35 128
Msa0737250 AT5G12870.1 50.459 109 54 0 17 125 14 122 9.59e-35 127
Msa0737250 AT4G12350.1 55.660 106 47 0 21 126 12 117 1.12e-34 127
Msa0737250 AT4G22680.1 43.709 151 80 2 20 166 11 160 1.50e-34 125
Msa0737250 AT3G28470.1 55.556 99 44 0 21 119 12 110 1.65e-34 127
Msa0737250 AT4G01680.2 51.667 120 46 1 21 128 12 131 3.84e-34 127
Msa0737250 AT3G48920.1 49.091 110 56 0 22 131 19 128 4.35e-34 124
Msa0737250 AT3G12720.1 50.000 108 54 0 21 128 22 129 5.65e-34 125
Msa0737250 AT4G25560.1 55.340 103 46 0 22 124 11 113 6.23e-34 124
Msa0737250 AT1G56160.1 51.887 106 51 0 21 126 14 119 6.73e-34 125
Msa0737250 AT3G12820.1 50.000 108 54 0 21 128 14 121 8.00e-34 123
Msa0737250 AT5G62320.1 42.767 159 70 3 20 162 12 165 8.71e-34 123
Msa0737250 AT3G24310.1 55.556 108 48 0 20 127 17 124 9.38e-34 124
Msa0737250 AT3G01530.1 50.893 112 55 0 14 125 18 129 1.65e-33 121
Msa0737250 AT2G32460.1 49.057 106 54 0 19 124 16 121 2.95e-33 127
Msa0737250 AT1G18710.1 51.818 110 52 1 20 129 11 119 3.11e-33 122
Msa0737250 AT2G32460.2 49.057 106 54 0 19 124 4 109 3.66e-33 126
Msa0737250 AT3G13890.1 50.000 116 49 1 21 127 12 127 3.67e-33 124
Msa0737250 AT2G36890.1 53.704 108 49 1 21 127 12 119 3.77e-33 123
Msa0737250 AT3G46130.1 47.863 117 61 0 13 129 1 117 4.02e-33 122
Msa0737250 AT1G63910.1 52.381 105 50 0 21 125 12 116 4.95e-33 124
Msa0737250 AT2G36890.2 53.704 108 49 1 21 127 53 160 5.70e-33 123
Msa0737250 AT3G53200.1 51.786 112 54 0 13 124 1 112 6.36e-33 120
Msa0737250 AT5G59780.3 50.926 108 53 0 22 129 9 116 8.74e-33 120
Msa0737250 AT4G13480.1 55.340 103 46 0 22 124 7 109 9.02e-33 121
Msa0737250 AT1G66230.1 44.928 138 66 1 20 147 11 148 1.24e-32 121
Msa0737250 AT3G08500.1 52.381 105 50 0 21 125 30 134 1.47e-32 122
Msa0737250 AT5G16600.1 43.056 144 70 1 20 151 11 154 2.24e-32 121
Msa0737250 AT5G52260.1 52.500 120 56 1 14 133 6 124 2.76e-32 120
Msa0737250 AT1G25340.1 55.340 103 46 0 22 124 19 121 2.81e-32 120
Msa0737250 AT5G55020.1 50.485 103 51 0 21 123 26 128 4.29e-32 124
Msa0737250 AT5G40350.1 45.600 125 68 0 21 145 17 141 4.63e-32 118
Msa0737250 AT4G26930.1 49.515 103 52 0 21 123 19 121 5.20e-32 122
Msa0737250 AT2G47190.1 51.923 104 50 0 21 124 20 123 5.52e-32 119
Msa0737250 AT5G14340.1 51.887 106 51 0 20 125 23 128 1.08e-31 119
Msa0737250 AT1G48000.1 55.340 103 46 0 21 123 32 134 1.10e-31 117
Msa0737250 AT5G14750.3 59.770 87 32 1 48 134 12 95 1.83e-31 115
Msa0737250 AT1G66380.3 83.333 72 12 0 53 124 7 78 2.71e-31 112
Msa0737250 AT3G27810.1 43.262 141 72 2 21 159 20 154 3.78e-31 115
Msa0737250 AT1G68320.1 54.808 104 47 0 21 124 19 122 4.83e-31 117
Msa0737250 AT2G26960.1 46.364 110 59 0 14 123 13 122 4.89e-31 120
Msa0737250 AT5G06100.1 45.714 105 57 0 20 124 31 135 2.10e-30 118
Msa0737250 AT5G06100.5 45.714 105 57 0 20 124 31 135 3.98e-30 118
Msa0737250 AT5G06100.2 45.714 105 57 0 20 124 31 135 3.98e-30 118
Msa0737250 AT5G06100.3 45.714 105 57 0 20 124 31 135 3.98e-30 118
Msa0737250 AT5G06100.4 45.714 105 57 0 20 124 31 135 3.98e-30 118
Msa0737250 AT3G11440.2 43.750 112 59 1 17 124 33 144 1.34e-29 116
Msa0737250 AT3G11440.3 42.727 110 63 0 15 124 35 144 2.27e-29 116
Msa0737250 AT3G11440.4 42.727 110 63 0 15 124 35 144 2.27e-29 116
Msa0737250 AT3G11440.1 42.727 110 63 0 15 124 35 144 2.27e-29 116
Msa0737250 AT1G25340.2 53.398 103 43 1 22 124 19 116 5.75e-29 111
Msa0737250 AT1G25340.3 53.398 103 43 1 22 124 19 116 8.32e-29 112
Msa0737250 AT1G79180.2 38.129 139 53 1 21 126 14 152 9.42e-29 112
Msa0737250 AT1G69560.1 37.589 141 84 2 16 156 100 236 1.37e-27 108
Msa0737250 AT1G69560.2 37.589 141 84 2 16 156 116 252 1.50e-27 109
Msa0737250 AT5G35550.2 58.140 86 31 1 54 139 50 130 1.77e-27 107
Msa0737250 AT3G53200.2 61.039 77 30 0 48 124 3 79 1.04e-26 103
Msa0737250 AT3G47600.2 65.278 72 25 0 54 125 39 110 6.52e-26 104
Msa0737250 AT5G26660.2 55.172 87 38 1 52 138 12 97 6.70e-26 104
Msa0737250 AT3G09230.1 35.135 185 113 4 19 199 48 229 8.07e-26 105
Msa0737250 AT5G49620.1 52.427 103 49 0 21 123 26 128 2.06e-25 102
Msa0737250 AT2G26950.1 43.299 97 55 0 23 119 18 114 2.24e-25 103
Msa0737250 AT5G11510.3 43.810 105 58 1 23 127 81 184 3.44e-25 105
Msa0737250 AT5G11510.1 43.810 105 58 1 23 127 81 184 3.44e-25 105
Msa0737250 AT5G11510.4 43.810 105 58 1 23 127 81 184 3.44e-25 105
Msa0737250 AT3G06490.1 51.456 103 50 0 21 123 19 121 4.45e-25 102
Msa0737250 AT5G11510.2 43.810 105 58 1 23 127 81 184 6.09e-25 104
Msa0737250 AT5G11510.5 43.810 105 58 1 23 127 81 184 6.31e-25 104
Msa0737250 AT1G26780.1 37.209 129 75 2 23 151 98 220 7.62e-25 100
Msa0737250 AT4G18770.1 41.667 120 61 2 14 129 208 322 1.12e-24 102
Msa0737250 AT1G17950.1 39.316 117 65 2 23 139 5 115 1.32e-24 99.4
Msa0737250 AT1G26780.2 37.209 129 75 2 23 151 98 220 1.82e-24 101
Msa0737250 AT3G12820.2 55.556 72 32 0 57 128 2 73 2.45e-24 97.1
Msa0737250 AT5G59780.2 56.410 78 34 0 52 129 18 95 2.46e-24 97.8
Msa0737250 AT3G46130.4 56.410 78 34 0 52 129 18 95 5.37e-24 97.4
Msa0737250 AT3G46130.3 55.844 77 34 0 53 129 9 85 1.13e-23 96.3
Msa0737250 AT5G14750.4 60.294 68 27 0 67 134 1 68 1.28e-23 94.0
Msa0737250 AT5G14750.2 60.294 68 27 0 67 134 1 68 1.28e-23 94.0
Msa0737250 AT3G55730.1 44.340 106 58 1 19 124 52 156 1.64e-23 99.0
Msa0737250 AT5G17800.1 30.457 197 115 5 18 201 88 275 1.98e-23 97.8
Msa0737250 AT2G39880.1 45.098 102 55 1 23 124 50 150 2.38e-23 98.2
Msa0737250 AT3G09370.1 43.137 102 57 1 23 124 130 230 2.52e-23 99.4
Msa0737250 AT3G09370.2 43.137 102 57 1 23 124 135 235 2.72e-23 99.4
Msa0737250 AT3G29020.1 35.461 141 86 3 15 152 57 195 3.13e-23 95.5
Msa0737250 AT3G09370.3 43.137 102 57 1 23 124 143 243 3.46e-23 99.0
Msa0737250 AT4G37260.1 43.396 106 51 2 23 124 13 113 3.87e-23 97.1
Msa0737250 AT3G60460.1 41.739 115 64 2 15 128 5 117 5.37e-23 96.3
Msa0737250 AT1G71030.2 60.294 68 27 0 59 126 4 71 5.65e-23 93.2
Msa0737250 AT1G71030.1 60.294 68 27 0 59 126 18 85 7.24e-23 93.6
Msa0737250 AT3G29020.2 35.461 141 86 3 15 152 59 197 9.46e-23 95.5
Msa0737250 AT4G33450.1 38.462 130 74 3 22 150 18 142 1.00e-22 94.4
Msa0737250 AT2G23290.1 43.396 106 51 2 23 124 13 113 1.21e-22 95.5
Msa0737250 AT1G73410.1 44.340 106 50 2 23 124 6 106 1.56e-22 93.6
Msa0737250 AT5G58850.1 35.714 126 80 1 10 135 92 216 2.63e-22 95.9
Msa0737250 AT1G73410.2 44.340 106 50 2 23 124 6 106 2.96e-22 92.0
Msa0737250 AT3G27785.1 39.496 119 71 1 16 134 182 299 4.15e-22 95.5
Msa0737250 AT2G37630.1 42.373 118 66 1 26 141 7 124 4.15e-22 94.7
Msa0737250 AT5G02320.1 40.777 103 60 1 23 125 127 228 4.28e-22 95.9
Msa0737250 AT5G02320.2 40.777 103 60 1 23 125 127 228 4.28e-22 95.9
Msa0737250 AT4G32730.5 33.333 141 88 2 23 163 87 221 5.87e-22 95.9
Msa0737250 AT4G32730.4 33.333 141 88 2 23 163 87 221 5.87e-22 95.9
Msa0737250 AT4G32730.3 33.333 141 88 2 23 163 87 221 5.87e-22 95.9
Msa0737250 AT4G32730.2 33.333 141 88 2 23 163 87 221 5.87e-22 95.9
Msa0737250 AT4G32730.1 33.333 141 88 2 23 163 87 221 5.94e-22 95.9
Msa0737250 AT5G02320.3 40.777 103 60 1 23 125 67 168 6.02e-22 95.1
Msa0737250 AT5G49620.2 46.154 117 49 1 21 123 26 142 6.65e-22 93.6
Msa0737250 AT5G67300.1 43.137 102 57 1 23 124 6 106 1.23e-21 92.4
Msa0737250 AT1G22640.3 58.065 62 26 0 67 128 1 62 1.50e-21 90.1
Msa0737250 AT3G50060.1 35.294 136 79 2 23 150 6 140 2.61e-21 91.7
Msa0737250 AT5G11050.1 35.537 121 77 1 15 135 97 216 3.68e-21 92.8
Msa0737250 AT3G23250.2 50.633 79 33 1 67 139 1 79 6.05e-21 89.0
Msa0737250 AT5G40350.2 44.565 92 51 0 54 145 5 96 7.45e-21 87.4
Msa0737250 AT3G27810.2 41.818 110 56 2 54 161 4 107 1.84e-20 86.7
Msa0737250 AT5G40360.1 39.806 103 61 1 21 123 156 257 1.59e-19 87.4
Msa0737250 AT5G39700.1 38.739 111 66 2 9 119 43 151 1.69e-19 84.3
Msa0737250 AT1G18960.1 40.566 106 54 3 23 125 10 109 9.15e-19 84.7
Msa0737250 AT2G25230.1 37.383 107 66 1 17 123 20 125 3.67e-17 79.0
Msa0737250 AT4G00540.2 37.500 112 58 3 21 125 101 207 7.56e-17 80.1
Msa0737250 AT4G00540.2 30.952 126 75 4 18 131 41 166 4.48e-11 63.2
Msa0737250 AT4G00540.1 37.500 112 58 3 21 125 99 205 1.23e-16 79.7
Msa0737250 AT4G00540.1 28.873 142 89 4 2 131 23 164 1.46e-11 64.7
Msa0737250 AT5G40430.1 35.514 107 67 2 17 123 48 152 5.86e-15 73.2
Msa0737250 AT2G02820.1 33.600 125 81 2 11 135 18 140 1.33e-13 70.9
Msa0737250 AT2G02820.2 33.600 125 81 2 11 135 18 140 1.38e-13 70.9
Msa0737250 AT2G02820.3 33.600 125 81 2 11 135 18 140 1.97e-13 69.7
Msa0737250 AT3G18100.4 35.922 103 65 1 15 117 377 478 9.76e-13 68.6
Msa0737250 AT3G18100.1 35.922 103 65 1 15 117 538 639 1.03e-12 68.6
Msa0737250 AT3G18100.3 35.922 103 65 1 15 117 490 591 1.09e-12 68.6
Msa0737250 AT3G18100.2 35.922 103 65 1 15 117 325 426 1.15e-12 68.2
Msa0737250 AT1G74650.3 63.636 44 16 0 86 129 1 44 1.33e-12 66.6
Msa0737250 AT1G14350.2 33.333 99 65 1 26 124 28 125 3.30e-12 66.6
Msa0737250 AT1G14350.1 33.333 99 65 1 26 124 28 125 3.30e-12 66.6
Msa0737250 AT4G25560.2 60.000 45 18 0 80 124 3 47 3.54e-12 64.7
Msa0737250 AT5G59780.1 57.447 47 20 0 83 129 5 51 7.19e-12 62.8
Msa0737250 AT3G46130.2 57.447 47 20 0 83 129 5 51 1.31e-11 62.8
Msa0737250 AT3G28910.2 65.000 40 14 0 86 125 1 40 1.31e-11 63.5
Msa0737250 AT1G09770.1 33.708 89 57 2 21 109 5 91 8.91e-11 62.8

Find 52 sgRNAs with CRISPR-Local

Find 176 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTCATTCAACATGGTTAAA+TGG 0.137400 5_1:+54347419 Msa0737250:CDS
AAAGTTCTCAACATTTAATT+TGG 0.173284 5_1:-54347669 None:intergenic
TTTAGATGATATCTTAAATT+AGG 0.200033 5_1:+54347760 Msa0737250:CDS
GTACTGTCGGTGATTGCTTC+TGG 0.240964 5_1:+54347708 Msa0737250:CDS
CTAATGATGTGAAGAATTAT+TGG 0.279813 5_1:+54347279 Msa0737250:CDS
ATGTACTTGCAGGATTAAAT+AGG 0.310472 5_1:+54346345 Msa0737250:intron
GATACTATTCTACCAATTAA+TGG 0.322604 5_1:+54347518 Msa0737250:CDS
AGAAGTATGGTGAAGGAAAA+TGG 0.332221 5_1:+54346169 Msa0737250:CDS
TACTGTCGGTGATTGCTTCT+GGG 0.333499 5_1:+54347709 Msa0737250:CDS
TTGATTGCTGCAAGACTTCC+GGG 0.345324 5_1:+54347248 Msa0737250:CDS
CAATCTCCATCACCATTAAT+TGG 0.348509 5_1:-54347530 None:intergenic
TGAGTTTGCATGCTTTCTTT+AGG 0.349780 5_1:-54347362 None:intergenic
ATGAAGTTGATATGATTCTA+AGG 0.352752 5_1:+54346441 Msa0737250:CDS
CTCATTCAACATGGTTAAAT+GGG 0.361243 5_1:+54347420 Msa0737250:CDS
CATTATATACCTGCTCTTTG+TGG 0.372515 5_1:-54346201 None:intergenic
ATTGATTGCTGCAAGACTTC+CGG 0.392491 5_1:+54347247 Msa0737250:CDS
TTTGTTGAAACCGTCACTAT+TGG 0.396668 5_1:-54347464 None:intergenic
TTTAATTTGGAATATTCCTC+TGG 0.409911 5_1:-54347656 None:intergenic
GAAGCAATCACCGACAGTAC+TGG 0.437278 5_1:-54347705 None:intergenic
CACACATTTGAGAAAGAAGA+TGG 0.443036 5_1:+54347304 Msa0737250:CDS
AAGGCTTGTATACAGAAGTA+TGG 0.446225 5_1:+54346156 Msa0737250:CDS
TACACAAGCTCCTAGGAAAC+AGG 0.453563 5_1:+54346465 Msa0737250:CDS
TGGACAAAAGCAAGTGCATA+TGG 0.458738 5_1:+54346071 Msa0737250:CDS
AACGTGAGCAATGACAAAAT+TGG 0.485163 5_1:+54347614 Msa0737250:CDS
AAGAGAGTCAAATTCACAAA+TGG 0.496518 5_1:-54347738 None:intergenic
GTTGAGAACTTTCTTACTGA+AGG 0.497950 5_1:+54347680 Msa0737250:CDS
AGCATACATACCTGTTTCCT+AGG 0.499222 5_1:-54346475 None:intergenic
CTCATGCCTTTGTTTGTCTG+TGG 0.499993 5_1:+54346051 None:intergenic
CTAAGGTTACACAAGCTCCT+AGG 0.501800 5_1:+54346458 Msa0737250:CDS
AAGACTAGAGGTGTGAGAAA+AGG 0.510939 5_1:+54346102 Msa0737250:CDS
ATTCTACCAATTAATGGTGA+TGG 0.517380 5_1:+54347524 Msa0737250:CDS
AAAACTTTCTCTATTGATGG+TGG 0.518195 5_1:-54346411 None:intergenic
AAACTTTCTCTATTGATGGT+GGG 0.522978 5_1:-54346410 None:intergenic
AAAAGGTGCATGGACATATG+AGG 0.529512 5_1:+54346119 Msa0737250:CDS
AAGCAATCACCGACAGTACT+GGG 0.544779 5_1:-54347704 None:intergenic
GTCGGAAAAGTTGTAGATTG+AGG 0.545982 5_1:+54346369 Msa0737250:CDS
CATTTAGTTCCACAAAGAGC+AGG 0.555403 5_1:+54346192 Msa0737250:CDS
CAACACTGTCTTCCATGTGG+TGG 0.573400 5_1:+54347579 Msa0737250:CDS
GTGACGGTTTCAACAAATGA+TGG 0.577862 5_1:+54347470 Msa0737250:CDS
AACACTGTCTTCCATGTGGT+GGG 0.581039 5_1:+54347580 Msa0737250:CDS
TTGCAGGATTAAATAGGTGT+CGG 0.591417 5_1:+54346351 Msa0737250:intron
ACATCATTAGCTGTTCTACC+CGG 0.596176 5_1:-54347266 None:intergenic
ATTTGTGACACCAATAGTGA+CGG 0.604064 5_1:+54347454 Msa0737250:CDS
TGAGGAAGACAAGCTACTCA+AGG 0.611389 5_1:+54346137 Msa0737250:CDS
TGTATACAGAAGTATGGTGA+AGG 0.613440 5_1:+54346162 Msa0737250:CDS
CAACAAACTCTCCCACCACA+TGG 0.617722 5_1:-54347591 None:intergenic
GGAAAAGTTGTAGATTGAGG+TGG 0.624177 5_1:+54346372 Msa0737250:CDS
GAGGTGTGAGAAAAGGTGCA+TGG 0.627735 5_1:+54346109 Msa0737250:CDS
ATGCTCTTTACTATTACCAG+AGG 0.637280 5_1:+54347640 Msa0737250:CDS
ACTGAAGGACCCAGTACTGT+CGG 0.653910 5_1:+54347695 Msa0737250:CDS
ATGGAGAAGAGTAAGACTAG+AGG 0.674464 5_1:+54346090 Msa0737250:CDS
ATTCAACACTGTCTTCCATG+TGG 0.732666 5_1:+54347576 Msa0737250:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AACAAATAAACTTACATTTA+AGG - chr5_1:54346581-54346600 None:intergenic 15.0%
!!! TTTAAAATTAGTCCTTTTTA+GGG - chr5_1:54346773-54346792 None:intergenic 15.0%
!!! ATTTAAAATTAGTCCTTTTT+AGG - chr5_1:54346774-54346793 None:intergenic 15.0%
!! TTAAATGAGTATAAAAAGTT+TGG + chr5_1:54347067-54347086 Msa0737250:intron 15.0%
!! TAAATGAGTATAAAAAGTTT+GGG + chr5_1:54347068-54347087 Msa0737250:intron 15.0%
!! TATTCTTAAAATAGTTTAAG+TGG - chr5_1:54347171-54347190 None:intergenic 15.0%
!! AACAAATAAACTTACATTTA+AGG - chr5_1:54346581-54346600 None:intergenic 15.0%
!!! TTTAAAATTAGTCCTTTTTA+GGG - chr5_1:54346773-54346792 None:intergenic 15.0%
!!! ATTTAAAATTAGTCCTTTTT+AGG - chr5_1:54346774-54346793 None:intergenic 15.0%
!! TTAAATGAGTATAAAAAGTT+TGG + chr5_1:54347067-54347086 Msa0737250:intron 15.0%
!! TAAATGAGTATAAAAAGTTT+GGG + chr5_1:54347068-54347087 Msa0737250:intron 15.0%
!! TATTCTTAAAATAGTTTAAG+TGG - chr5_1:54347171-54347190 None:intergenic 15.0%
!! TGCTTATTGTATTGTATATT+TGG + chr5_1:54346229-54346248 Msa0737250:intron 20.0%
!! TATCTAATTAAATGACAACT+TGG - chr5_1:54346508-54346527 None:intergenic 20.0%
!! GTGAAATATTATTGATAAAG+TGG - chr5_1:54346709-54346728 None:intergenic 20.0%
!! TAACTAGTAGTATTAATCAA+AGG - chr5_1:54346837-54346856 None:intergenic 20.0%
!! CTAAGAGATATTCATAAAAA+AGG + chr5_1:54346869-54346888 Msa0737250:intron 20.0%
!! AAAGTTCTCAACATTTAATT+TGG - chr5_1:54347672-54347691 None:intergenic 20.0%
!! TGCTTATTGTATTGTATATT+TGG + chr5_1:54346229-54346248 Msa0737250:intron 20.0%
!! TATCTAATTAAATGACAACT+TGG - chr5_1:54346508-54346527 None:intergenic 20.0%
!! GTGAAATATTATTGATAAAG+TGG - chr5_1:54346709-54346728 None:intergenic 20.0%
!! TAACTAGTAGTATTAATCAA+AGG - chr5_1:54346837-54346856 None:intergenic 20.0%
!! CTAAGAGATATTCATAAAAA+AGG + chr5_1:54346869-54346888 Msa0737250:intron 20.0%
!! AAAGTTCTCAACATTTAATT+TGG - chr5_1:54347672-54347691 None:intergenic 20.0%
! AGAAAAACTTTCTCTATTGA+TGG - chr5_1:54346417-54346436 None:intergenic 25.0%
!!! ATGAAGTTGATATGATTCTA+AGG + chr5_1:54346441-54346460 Msa0737250:CDS 25.0%
!! AATTCAAATTTTCTCGAAGA+TGG + chr5_1:54346658-54346677 Msa0737250:intron 25.0%
!! ATTCAAATTTTCTCGAAGAT+GGG + chr5_1:54346659-54346678 Msa0737250:intron 25.0%
! GATAAAGTGGCAATATATAT+TGG - chr5_1:54346696-54346715 None:intergenic 25.0%
!! TATTAATCAAAGGTTTGCTT+GGG - chr5_1:54346827-54346846 None:intergenic 25.0%
! TCAAGATGTATACATCATAT+AGG - chr5_1:54346953-54346972 None:intergenic 25.0%
! CTAATGATGTGAAGAATTAT+TGG + chr5_1:54347279-54347298 Msa0737250:CDS 25.0%
! GATACTATTCTACCAATTAA+TGG + chr5_1:54347518-54347537 Msa0737250:CDS 25.0%
!!! AGTGTTGAATTTTCAAGATA+TGG - chr5_1:54347566-54347585 None:intergenic 25.0%
!!! TTTAATTTGGAATATTCCTC+TGG - chr5_1:54347659-54347678 None:intergenic 25.0%
! AGAAAAACTTTCTCTATTGA+TGG - chr5_1:54346417-54346436 None:intergenic 25.0%
!!! ATGAAGTTGATATGATTCTA+AGG + chr5_1:54346441-54346460 Msa0737250:CDS 25.0%
!! AATTCAAATTTTCTCGAAGA+TGG + chr5_1:54346658-54346677 Msa0737250:intron 25.0%
!! ATTCAAATTTTCTCGAAGAT+GGG + chr5_1:54346659-54346678 Msa0737250:intron 25.0%
! GATAAAGTGGCAATATATAT+TGG - chr5_1:54346696-54346715 None:intergenic 25.0%
!! TATTAATCAAAGGTTTGCTT+GGG - chr5_1:54346827-54346846 None:intergenic 25.0%
! TCAAGATGTATACATCATAT+AGG - chr5_1:54346953-54346972 None:intergenic 25.0%
! CTAATGATGTGAAGAATTAT+TGG + chr5_1:54347279-54347298 Msa0737250:CDS 25.0%
! GATACTATTCTACCAATTAA+TGG + chr5_1:54347518-54347537 Msa0737250:CDS 25.0%
!!! AGTGTTGAATTTTCAAGATA+TGG - chr5_1:54347566-54347585 None:intergenic 25.0%
!!! TTTAATTTGGAATATTCCTC+TGG - chr5_1:54347659-54347678 None:intergenic 25.0%
ATGTACTTGCAGGATTAAAT+AGG + chr5_1:54346345-54346364 Msa0737250:intron 30.0%
! AAACTTTCTCTATTGATGGT+GGG - chr5_1:54346413-54346432 None:intergenic 30.0%
AAAACTTTCTCTATTGATGG+TGG - chr5_1:54346414-54346433 None:intergenic 30.0%
! CAATAGAGAAAGTTTTTCTG+AGG + chr5_1:54346418-54346437 Msa0737250:CDS 30.0%
!!! AGCTTGTTTTGTAATCTGAA+GGG + chr5_1:54346631-54346650 Msa0737250:intron 30.0%
!!! GTCCTTTTTTTTCCCTAAAA+AGG + chr5_1:54346758-54346777 Msa0737250:intron 30.0%
!! GTCCTTTTTAGGGAAAAAAA+AGG - chr5_1:54346763-54346782 None:intergenic 30.0%
! GTATTAATCAAAGGTTTGCT+TGG - chr5_1:54346828-54346847 None:intergenic 30.0%
AGGACAAGTGTCTTAAAATA+TGG + chr5_1:54346889-54346908 Msa0737250:intron 30.0%
GGACAAGTGTCTTAAAATAT+GGG + chr5_1:54346890-54346909 Msa0737250:intron 30.0%
GACAAGTGTCTTAAAATATG+GGG + chr5_1:54346891-54346910 Msa0737250:intron 30.0%
ACAAGTGTCTTAAAATATGG+GGG + chr5_1:54346892-54346911 Msa0737250:intron 30.0%
CATCAACATATTACATCGAT+CGG - chr5_1:54347009-54347028 None:intergenic 30.0%
!! CTTTTTCATCTCATTCAACA+TGG + chr5_1:54347411-54347430 Msa0737250:CDS 30.0%
TCTCATTCAACATGGTTAAA+TGG + chr5_1:54347419-54347438 Msa0737250:CDS 30.0%
CTCATTCAACATGGTTAAAT+GGG + chr5_1:54347420-54347439 Msa0737250:CDS 30.0%
ATTCTACCAATTAATGGTGA+TGG + chr5_1:54347524-54347543 Msa0737250:CDS 30.0%
AAGAGAGTCAAATTCACAAA+TGG - chr5_1:54347741-54347760 None:intergenic 30.0%
ATGTACTTGCAGGATTAAAT+AGG + chr5_1:54346345-54346364 Msa0737250:intron 30.0%
! AAACTTTCTCTATTGATGGT+GGG - chr5_1:54346413-54346432 None:intergenic 30.0%
AAAACTTTCTCTATTGATGG+TGG - chr5_1:54346414-54346433 None:intergenic 30.0%
! CAATAGAGAAAGTTTTTCTG+AGG + chr5_1:54346418-54346437 Msa0737250:CDS 30.0%
!!! AGCTTGTTTTGTAATCTGAA+GGG + chr5_1:54346631-54346650 Msa0737250:intron 30.0%
!!! GTCCTTTTTTTTCCCTAAAA+AGG + chr5_1:54346758-54346777 Msa0737250:intron 30.0%
!! GTCCTTTTTAGGGAAAAAAA+AGG - chr5_1:54346763-54346782 None:intergenic 30.0%
! GTATTAATCAAAGGTTTGCT+TGG - chr5_1:54346828-54346847 None:intergenic 30.0%
AGGACAAGTGTCTTAAAATA+TGG + chr5_1:54346889-54346908 Msa0737250:intron 30.0%
GGACAAGTGTCTTAAAATAT+GGG + chr5_1:54346890-54346909 Msa0737250:intron 30.0%
GACAAGTGTCTTAAAATATG+GGG + chr5_1:54346891-54346910 Msa0737250:intron 30.0%
ACAAGTGTCTTAAAATATGG+GGG + chr5_1:54346892-54346911 Msa0737250:intron 30.0%
CATCAACATATTACATCGAT+CGG - chr5_1:54347009-54347028 None:intergenic 30.0%
!! CTTTTTCATCTCATTCAACA+TGG + chr5_1:54347411-54347430 Msa0737250:CDS 30.0%
TCTCATTCAACATGGTTAAA+TGG + chr5_1:54347419-54347438 Msa0737250:CDS 30.0%
CTCATTCAACATGGTTAAAT+GGG + chr5_1:54347420-54347439 Msa0737250:CDS 30.0%
ATTCTACCAATTAATGGTGA+TGG + chr5_1:54347524-54347543 Msa0737250:CDS 30.0%
AAGAGAGTCAAATTCACAAA+TGG - chr5_1:54347741-54347760 None:intergenic 30.0%
! TTTTGTCCACAGACAAACAA+AGG - chr5_1:54346060-54346079 None:intergenic 35.0%
AAGGCTTGTATACAGAAGTA+TGG + chr5_1:54346156-54346175 Msa0737250:CDS 35.0%
! TGTATACAGAAGTATGGTGA+AGG + chr5_1:54346162-54346181 Msa0737250:CDS 35.0%
! AGAAGTATGGTGAAGGAAAA+TGG + chr5_1:54346169-54346188 Msa0737250:CDS 35.0%
CATTATATACCTGCTCTTTG+TGG - chr5_1:54346204-54346223 None:intergenic 35.0%
! TACTTGTTACATGTACTTGC+AGG + chr5_1:54346335-54346354 Msa0737250:intron 35.0%
TTGCAGGATTAAATAGGTGT+CGG + chr5_1:54346351-54346370 Msa0737250:intron 35.0%
ATTAAATGACAACTTGGCCT+TGG - chr5_1:54346502-54346521 None:intergenic 35.0%
!!! GAGCTTGTTTTGTAATCTGA+AGG + chr5_1:54346630-54346649 Msa0737250:intron 35.0%
TGGGGGAAGTCAATATTAAA+TGG + chr5_1:54346909-54346928 Msa0737250:intron 35.0%
CACACATTTGAGAAAGAAGA+TGG + chr5_1:54347304-54347323 Msa0737250:CDS 35.0%
TGAGTTTGCATGCTTTCTTT+AGG - chr5_1:54347365-54347384 None:intergenic 35.0%
GAATGAGATGAAAAAGTTCG+AGG - chr5_1:54347407-54347426 None:intergenic 35.0%
ATTTGTGACACCAATAGTGA+CGG + chr5_1:54347454-54347473 Msa0737250:CDS 35.0%
TTTGTTGAAACCGTCACTAT+TGG - chr5_1:54347467-54347486 None:intergenic 35.0%
CAATCTCCATCACCATTAAT+TGG - chr5_1:54347533-54347552 None:intergenic 35.0%
AACGTGAGCAATGACAAAAT+TGG + chr5_1:54347614-54347633 Msa0737250:CDS 35.0%
ATGCTCTTTACTATTACCAG+AGG + chr5_1:54347640-54347659 Msa0737250:CDS 35.0%
GTTGAGAACTTTCTTACTGA+AGG + chr5_1:54347680-54347699 Msa0737250:CDS 35.0%
! TTTTGTCCACAGACAAACAA+AGG - chr5_1:54346060-54346079 None:intergenic 35.0%
AAGGCTTGTATACAGAAGTA+TGG + chr5_1:54346156-54346175 Msa0737250:CDS 35.0%
! TGTATACAGAAGTATGGTGA+AGG + chr5_1:54346162-54346181 Msa0737250:CDS 35.0%
! AGAAGTATGGTGAAGGAAAA+TGG + chr5_1:54346169-54346188 Msa0737250:CDS 35.0%
CATTATATACCTGCTCTTTG+TGG - chr5_1:54346204-54346223 None:intergenic 35.0%
! TACTTGTTACATGTACTTGC+AGG + chr5_1:54346335-54346354 Msa0737250:intron 35.0%
TTGCAGGATTAAATAGGTGT+CGG + chr5_1:54346351-54346370 Msa0737250:intron 35.0%
ATTAAATGACAACTTGGCCT+TGG - chr5_1:54346502-54346521 None:intergenic 35.0%
!!! GAGCTTGTTTTGTAATCTGA+AGG + chr5_1:54346630-54346649 Msa0737250:intron 35.0%
TGGGGGAAGTCAATATTAAA+TGG + chr5_1:54346909-54346928 Msa0737250:intron 35.0%
CACACATTTGAGAAAGAAGA+TGG + chr5_1:54347304-54347323 Msa0737250:CDS 35.0%
TGAGTTTGCATGCTTTCTTT+AGG - chr5_1:54347365-54347384 None:intergenic 35.0%
GAATGAGATGAAAAAGTTCG+AGG - chr5_1:54347407-54347426 None:intergenic 35.0%
ATTTGTGACACCAATAGTGA+CGG + chr5_1:54347454-54347473 Msa0737250:CDS 35.0%
TTTGTTGAAACCGTCACTAT+TGG - chr5_1:54347467-54347486 None:intergenic 35.0%
CAATCTCCATCACCATTAAT+TGG - chr5_1:54347533-54347552 None:intergenic 35.0%
AACGTGAGCAATGACAAAAT+TGG + chr5_1:54347614-54347633 Msa0737250:CDS 35.0%
ATGCTCTTTACTATTACCAG+AGG + chr5_1:54347640-54347659 Msa0737250:CDS 35.0%
GTTGAGAACTTTCTTACTGA+AGG + chr5_1:54347680-54347699 Msa0737250:CDS 35.0%
TGGACAAAAGCAAGTGCATA+TGG + chr5_1:54346071-54346090 Msa0737250:CDS 40.0%
ATGGAGAAGAGTAAGACTAG+AGG + chr5_1:54346090-54346109 Msa0737250:CDS 40.0%
! AAGACTAGAGGTGTGAGAAA+AGG + chr5_1:54346102-54346121 Msa0737250:CDS 40.0%
! AAAAGGTGCATGGACATATG+AGG + chr5_1:54346119-54346138 Msa0737250:CDS 40.0%
! CATTTAGTTCCACAAAGAGC+AGG + chr5_1:54346192-54346211 Msa0737250:CDS 40.0%
GTCGGAAAAGTTGTAGATTG+AGG + chr5_1:54346369-54346388 Msa0737250:CDS 40.0%
GGAAAAGTTGTAGATTGAGG+TGG + chr5_1:54346372-54346391 Msa0737250:CDS 40.0%
AGCATACATACCTGTTTCCT+AGG - chr5_1:54346478-54346497 None:intergenic 40.0%
ATTGATTGCTGCAAGACTTC+CGG + chr5_1:54347247-54347266 Msa0737250:CDS 40.0%
ACATCATTAGCTGTTCTACC+CGG - chr5_1:54347269-54347288 None:intergenic 40.0%
GATGAAAAAGTTCGAGGTTG+AGG - chr5_1:54347401-54347420 None:intergenic 40.0%
GTGACGGTTTCAACAAATGA+TGG + chr5_1:54347470-54347489 Msa0737250:CDS 40.0%
ATTCAACACTGTCTTCCATG+TGG + chr5_1:54347576-54347595 Msa0737250:CDS 40.0%
TGGACAAAAGCAAGTGCATA+TGG + chr5_1:54346071-54346090 Msa0737250:CDS 40.0%
ATGGAGAAGAGTAAGACTAG+AGG + chr5_1:54346090-54346109 Msa0737250:CDS 40.0%
! AAGACTAGAGGTGTGAGAAA+AGG + chr5_1:54346102-54346121 Msa0737250:CDS 40.0%
! AAAAGGTGCATGGACATATG+AGG + chr5_1:54346119-54346138 Msa0737250:CDS 40.0%
! CATTTAGTTCCACAAAGAGC+AGG + chr5_1:54346192-54346211 Msa0737250:CDS 40.0%
GTCGGAAAAGTTGTAGATTG+AGG + chr5_1:54346369-54346388 Msa0737250:CDS 40.0%
GGAAAAGTTGTAGATTGAGG+TGG + chr5_1:54346372-54346391 Msa0737250:CDS 40.0%
AGCATACATACCTGTTTCCT+AGG - chr5_1:54346478-54346497 None:intergenic 40.0%
ATTGATTGCTGCAAGACTTC+CGG + chr5_1:54347247-54347266 Msa0737250:CDS 40.0%
ACATCATTAGCTGTTCTACC+CGG - chr5_1:54347269-54347288 None:intergenic 40.0%
GATGAAAAAGTTCGAGGTTG+AGG - chr5_1:54347401-54347420 None:intergenic 40.0%
GTGACGGTTTCAACAAATGA+TGG + chr5_1:54347470-54347489 Msa0737250:CDS 40.0%
ATTCAACACTGTCTTCCATG+TGG + chr5_1:54347576-54347595 Msa0737250:CDS 40.0%
TGAGGAAGACAAGCTACTCA+AGG + chr5_1:54346137-54346156 Msa0737250:CDS 45.0%
CTAAGGTTACACAAGCTCCT+AGG + chr5_1:54346458-54346477 Msa0737250:CDS 45.0%
TACACAAGCTCCTAGGAAAC+AGG + chr5_1:54346465-54346484 Msa0737250:CDS 45.0%
AACAGGTATGTATGCTGCCA+AGG + chr5_1:54346482-54346501 Msa0737250:intron 45.0%
TTGATTGCTGCAAGACTTCC+GGG + chr5_1:54347248-54347267 Msa0737250:CDS 45.0%
AACACTGTCTTCCATGTGGT+GGG + chr5_1:54347580-54347599 Msa0737250:CDS 45.0%
AAGCAATCACCGACAGTACT+GGG - chr5_1:54347707-54347726 None:intergenic 45.0%
TACTGTCGGTGATTGCTTCT+GGG + chr5_1:54347709-54347728 Msa0737250:CDS 45.0%
TGAGGAAGACAAGCTACTCA+AGG + chr5_1:54346137-54346156 Msa0737250:CDS 45.0%
CTAAGGTTACACAAGCTCCT+AGG + chr5_1:54346458-54346477 Msa0737250:CDS 45.0%
TACACAAGCTCCTAGGAAAC+AGG + chr5_1:54346465-54346484 Msa0737250:CDS 45.0%
AACAGGTATGTATGCTGCCA+AGG + chr5_1:54346482-54346501 Msa0737250:intron 45.0%
TTGATTGCTGCAAGACTTCC+GGG + chr5_1:54347248-54347267 Msa0737250:CDS 45.0%
AACACTGTCTTCCATGTGGT+GGG + chr5_1:54347580-54347599 Msa0737250:CDS 45.0%
AAGCAATCACCGACAGTACT+GGG - chr5_1:54347707-54347726 None:intergenic 45.0%
TACTGTCGGTGATTGCTTCT+GGG + chr5_1:54347709-54347728 Msa0737250:CDS 45.0%
!!! TATTTTTATATTTTTATAGA+TGG + chr5_1:54347222-54347241 Msa0737250:intron 5.0%
!!! TATTTTTATATTTTTATAGA+TGG + chr5_1:54347222-54347241 Msa0737250:intron 5.0%
! GAGGTGTGAGAAAAGGTGCA+TGG + chr5_1:54346109-54346128 Msa0737250:CDS 50.0%
CAACACTGTCTTCCATGTGG+TGG + chr5_1:54347579-54347598 Msa0737250:CDS 50.0%
CAACAAACTCTCCCACCACA+TGG - chr5_1:54347594-54347613 None:intergenic 50.0%
ACTGAAGGACCCAGTACTGT+CGG + chr5_1:54347695-54347714 Msa0737250:CDS 50.0%
GAAGCAATCACCGACAGTAC+TGG - chr5_1:54347708-54347727 None:intergenic 50.0%
GTACTGTCGGTGATTGCTTC+TGG + chr5_1:54347708-54347727 Msa0737250:CDS 50.0%
! GAGGTGTGAGAAAAGGTGCA+TGG + chr5_1:54346109-54346128 Msa0737250:CDS 50.0%
CAACACTGTCTTCCATGTGG+TGG + chr5_1:54347579-54347598 Msa0737250:CDS 50.0%
CAACAAACTCTCCCACCACA+TGG - chr5_1:54347594-54347613 None:intergenic 50.0%
ACTGAAGGACCCAGTACTGT+CGG + chr5_1:54347695-54347714 Msa0737250:CDS 50.0%
GAAGCAATCACCGACAGTAC+TGG - chr5_1:54347708-54347727 None:intergenic 50.0%
GTACTGTCGGTGATTGCTTC+TGG + chr5_1:54347708-54347727 Msa0737250:CDS 50.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 54346054 54347781 54346054 ID=Msa0737250;Name=Msa0737250
chr5_1 mRNA 54346054 54347781 54346054 ID=Msa0737250-mRNA-1;Parent=Msa0737250;Name=Msa0737250-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|0|0|1|1|1|3|0|276
chr5_1 exon 54346054 54346213 54346054 ID=Msa0737250-mRNA-1:exon:15258;Parent=Msa0737250-mRNA-1
chr5_1 exon 54346357 54346486 54346357 ID=Msa0737250-mRNA-1:exon:15259;Parent=Msa0737250-mRNA-1
chr5_1 exon 54347241 54347781 54347241 ID=Msa0737250-mRNA-1:exon:15260;Parent=Msa0737250-mRNA-1
chr5_1 CDS 54346054 54346213 54346054 ID=Msa0737250-mRNA-1:cds;Parent=Msa0737250-mRNA-1
chr5_1 CDS 54346357 54346486 54346357 ID=Msa0737250-mRNA-1:cds;Parent=Msa0737250-mRNA-1
chr5_1 CDS 54347241 54347781 54347241 ID=Msa0737250-mRNA-1:cds;Parent=Msa0737250-mRNA-1
Gene Sequence

>Msa0737250

ATGCCTTTGTTTGTCTGTGGACAAAAGCAAGTGCATATGGAGAAGAGTAAGACTAGAGGTGTGAGAAAAGGTGCATGGACATATGAGGAAGACAAGCTACTCAAGGCTTGTATACAGAAGTATGGTGAAGGAAAATGGCATTTAGTTCCACAAAGAGCAGGATTAAATAGGTGTCGGAAAAGTTGTAGATTGAGGTGGTTAAATTATTTAAATCCCACCATCAATAGAGAAAGTTTTTCTGAGGATGAAGTTGATATGATTCTAAGGTTACACAAGCTCCTAGGAAACAGATGGTCATTGATTGCTGCAAGACTTCCGGGTAGAACAGCTAATGATGTGAAGAATTATTGGCACACACATTTGAGAAAGAAGATGGTTTCAAGAAAAGAAGAAAAGAAAGAAAATGAGAAGCCTAAAGAAAGCATGCAAACTCATGAAGTGATTAAACCTCAACCTCGAACTTTTTCATCTCATTCAACATGGTTAAATGGGAAATATAATAAATTTGTGACACCAATAGTGACGGTTTCAACAAATGATGGTACTGTTGCAAAAGATAGTGAAGTAGATACTATTCTACCAATTAATGGTGATGGAGATTGTGCTGCACAACCATATCTTGAAAATTCAACACTGTCTTCCATGTGGTGGGAGAGTTTGTTGAACGTGAGCAATGACAAAATTGGATCATGCTCTTTACTATTACCAGAGGAATATTCCAAATTAAATGTTGAGAACTTTCTTACTGAAGGACCCAGTACTGTCGGTGATTGCTTCTGGGATTCTACCATTTGTGAATTTGACTCTCTTTTAGATGATATCTTAAATTAG
Protein sequence

>Msa0737250

MPLFVCGQKQVHMEKSKTRGVRKGAWTYEEDKLLKACIQKYGEGKWHLVPQRAGLNRCRKSCRLRWLNYLNPTINRESFSEDEVDMILRLHKLLGNRWSLIAARLPGRTANDVKNYWHTHLRKKMVSRKEEKKENEKPKESMQTHEVIKPQPRTFSSHSTWLNGKYNKFVTPIVTVSTNDGTVAKDSEVDTILPINGDGDCAAQPYLENSTLSSMWWESLLNVSNDKIGSCSLLLPEEYSKLNVENFLTEGPSTVGDCFWDSTICEFDSLLDDILN*