AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0856540

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0856540 MtrunA17_Chr5g0434911 95.652 276 12 0 1 276 1 276 0.0 520
Msa0856540 MtrunA17_Chr5g0434931 65.517 261 72 6 18 270 32 282 1.59e-107 313
Msa0856540 MtrunA17_Chr5g0434841 56.151 317 86 9 1 268 1 313 3.53e-102 300
Msa0856540 MtrunA17_Chr7g0220341 58.545 275 90 7 9 272 13 274 4.92e-101 296
Msa0856540 MtrunA17_Chr7g0228991 62.934 259 80 7 19 272 27 274 5.09e-101 296
Msa0856540 MtrunA17_Chr5g0434831 74.033 181 41 3 17 192 3 182 3.74e-85 253
Msa0856540 MtrunA17_Chr8g0360111 56.044 273 88 6 8 272 12 260 1.78e-82 248
Msa0856540 MtrunA17_Chr7g0229101 52.889 225 81 6 53 272 4 208 5.04e-58 184
Msa0856540 MtrunA17_Chr7g0240821 63.704 135 45 1 25 159 5 135 9.22e-58 184
Msa0856540 MtrunA17_Chr5g0434901 80.180 111 21 1 55 165 7 116 1.00e-52 167
Msa0856540 MtrunA17_Chr4g0070611 56.115 139 61 0 20 158 11 149 6.54e-51 169
Msa0856540 MtrunA17_Chr4g0070641 56.115 139 61 0 20 158 11 149 1.01e-50 164
Msa0856540 MtrunA17_Chr7g0229131 54.037 161 60 3 53 212 4 151 2.95e-50 163
Msa0856540 MtrunA17_Chr4g0055981 57.812 128 53 1 21 148 55 181 3.70e-46 154
Msa0856540 MtrunA17_Chr3g0121241 60.550 109 43 0 20 128 41 149 4.85e-46 156
Msa0856540 MtrunA17_Chr7g0274581 63.208 106 39 0 20 125 11 116 1.05e-45 152
Msa0856540 MtrunA17_Chr8g0346561 62.264 106 40 0 20 125 11 116 1.12e-43 150
Msa0856540 MtrunA17_Chr5g0435101 60.377 106 42 0 21 126 11 116 2.80e-43 146
Msa0856540 MtrunA17_Chr1g0187761 54.098 122 54 1 20 139 11 132 3.04e-43 148
Msa0856540 MtrunA17_Chr7g0275911 57.658 111 47 0 20 130 11 121 4.15e-43 147
Msa0856540 MtrunA17_Chr5g0434891 58.015 131 45 3 86 212 1 125 4.84e-43 144
Msa0856540 MtrunA17_Chr3g0131121 51.493 134 65 0 23 156 14 147 8.72e-43 148
Msa0856540 MtrunA17_Chr8g0343831 64.762 105 37 0 21 125 8 112 1.55e-42 146
Msa0856540 MtrunA17_Chr4g0022931 53.383 133 60 1 17 147 9 141 1.67e-42 146
Msa0856540 MtrunA17_Chr4g0022911 49.296 142 69 1 17 158 9 147 4.85e-42 145
Msa0856540 MtrunA17_Chr1g0167661 54.955 111 50 0 19 129 10 120 8.85e-42 144
Msa0856540 MtrunA17_Chr4g0037141 59.434 106 43 0 23 128 14 119 1.02e-41 144
Msa0856540 MtrunA17_Chr7g0261281 54.237 118 54 0 20 137 11 128 1.36e-41 144
Msa0856540 MtrunA17_Chr4g0022901 58.182 110 46 0 17 126 9 118 1.62e-41 144
Msa0856540 MtrunA17_Chr2g0323351 51.111 135 65 1 20 153 11 145 1.89e-41 143
Msa0856540 MtrunA17_Chr1g0167691 54.630 108 49 0 19 126 10 117 2.05e-41 143
Msa0856540 MtrunA17_Chr4g0048511 57.273 110 47 0 17 126 9 118 2.79e-41 145
Msa0856540 MtrunA17_Chr1g0203411 52.800 125 59 0 20 144 11 135 3.83e-41 143
Msa0856540 MtrunA17_Chr2g0281071 57.273 110 47 0 17 126 9 118 4.77e-41 144
Msa0856540 MtrunA17_Chr3g0115821 57.944 107 45 0 20 126 11 117 8.26e-41 144
Msa0856540 MtrunA17_Chr5g0395281 57.009 107 46 0 20 126 11 117 9.23e-41 142
Msa0856540 MtrunA17_Chr7g0217221 59.434 106 43 0 20 125 11 116 2.47e-40 140
Msa0856540 MtrunA17_Chr3g0092401 54.472 123 56 0 20 142 12 134 4.99e-40 141
Msa0856540 MtrunA17_Chr4g0044421 58.491 106 44 0 23 128 14 119 7.74e-40 137
Msa0856540 MtrunA17_Chr4g0039971 56.075 107 47 0 20 126 12 118 1.22e-39 141
Msa0856540 MtrunA17_Chr4g0042671 54.545 121 54 1 20 140 11 130 2.19e-39 141
Msa0856540 MtrunA17_Chr5g0410961 57.944 107 45 0 20 126 11 117 5.60e-39 139
Msa0856540 MtrunA17_Chr4g0068061 44.667 150 81 1 20 167 11 160 6.63e-39 139
Msa0856540 MtrunA17_Chr2g0323411 57.009 107 46 0 20 126 11 117 6.87e-39 138
Msa0856540 MtrunA17_Chr4g0060721 57.547 106 45 0 20 125 12 117 1.55e-38 137
Msa0856540 MtrunA17_Chr7g0217741 56.075 107 47 0 20 126 11 117 3.39e-38 136
Msa0856540 MtrunA17_Chr7g0254411 56.604 106 46 0 20 125 11 116 1.01e-37 135
Msa0856540 MtrunA17_Chr5g0400821 51.695 118 56 1 21 137 12 129 1.66e-37 134
Msa0856540 MtrunA17_Chr4g0022881 54.808 104 47 0 20 123 11 114 2.01e-37 132
Msa0856540 MtrunA17_Chr7g0270891 57.143 105 45 0 21 125 12 116 2.56e-37 135
Msa0856540 MtrunA17_Chr4g0058631 47.826 138 57 1 21 143 12 149 3.92e-37 134
Msa0856540 MtrunA17_Chr6g0452271 55.660 106 47 0 21 126 12 117 4.61e-37 134
Msa0856540 MtrunA17_Chr6g0453471 56.075 107 47 0 20 126 11 117 5.29e-37 134
Msa0856540 MtrunA17_Chr8g0385321 53.774 106 49 0 23 128 14 119 5.78e-37 133
Msa0856540 MtrunA17_Chr1g0194951 42.581 155 84 2 20 174 11 160 6.70e-37 134
Msa0856540 MtrunA17_Chr3g0103281 56.190 105 46 0 21 125 12 116 8.48e-37 133
Msa0856540 MtrunA17_Chr3g0117091 35.366 246 134 7 21 247 12 251 1.16e-36 133
Msa0856540 MtrunA17_Chr1g0193801 56.190 105 46 0 21 125 12 116 1.28e-36 134
Msa0856540 MtrunA17_Chr4g0022891 51.304 115 54 1 20 134 11 123 1.85e-36 130
Msa0856540 MtrunA17_Chr1g0152011 52.137 117 53 2 21 134 12 128 2.29e-36 132
Msa0856540 MtrunA17_Chr1g0211161 44.595 148 64 2 21 153 13 157 2.84e-36 129
Msa0856540 MtrunA17_Chr1g0203441 52.542 118 55 1 13 130 6 122 3.76e-36 130
Msa0856540 MtrunA17_Chr6g0453211 58.416 101 42 0 20 120 11 111 3.81e-36 131
Msa0856540 MtrunA17_Chr6g0470971 52.137 117 56 0 14 130 7 123 5.14e-36 130
Msa0856540 MtrunA17_Chr3g0135311 53.913 115 50 2 21 132 12 126 5.84e-36 131
Msa0856540 MtrunA17_Chr8g0342541 44.444 153 66 3 12 163 3 137 8.15e-36 130
Msa0856540 MtrunA17_Chr1g0193371 55.238 105 47 0 21 125 12 116 1.04e-35 131
Msa0856540 MtrunA17_Chr2g0330041 50.427 117 58 0 12 128 3 119 1.38e-35 131
Msa0856540 MtrunA17_Chr8g0349261 52.778 108 50 1 20 126 12 119 1.45e-35 129
Msa0856540 MtrunA17_Chr4g0057031 55.140 107 48 0 20 126 11 117 1.49e-35 128
Msa0856540 MtrunA17_Chr8g0342521 52.778 108 51 0 21 128 12 119 2.47e-35 129
Msa0856540 MtrunA17_Chr1g0151941 51.852 108 51 1 21 127 12 119 3.32e-35 127
Msa0856540 MtrunA17_Chr5g0417821 48.387 124 63 1 16 139 2 124 1.78e-34 126
Msa0856540 MtrunA17_Chr4g0028311 53.636 110 50 1 21 129 12 121 1.85e-34 127
Msa0856540 MtrunA17_Chr2g0328771 52.381 105 50 0 21 125 20 124 2.15e-34 126
Msa0856540 MtrunA17_Chr4g0054391 38.542 192 107 5 21 201 12 203 2.16e-34 125
Msa0856540 MtrunA17_Chr3g0088461 49.600 125 58 3 2 125 6 126 2.19e-34 127
Msa0856540 MtrunA17_Chr7g0264641 54.630 108 48 1 21 127 12 119 3.23e-34 125
Msa0856540 MtrunA17_Chr4g0032401 53.333 105 49 0 21 125 17 121 3.91e-34 126
Msa0856540 MtrunA17_Chr8g0387421 52.381 105 50 0 21 125 12 116 5.14e-34 125
Msa0856540 MtrunA17_Chr7g0271241 59.184 98 40 0 21 118 12 109 6.49e-34 126
Msa0856540 MtrunA17_Chr3g0110351 55.660 106 47 0 20 125 11 116 9.47e-34 124
Msa0856540 MtrunA17_Chr1g0186061 55.340 103 46 0 22 124 21 123 1.38e-33 122
Msa0856540 MtrunA17_Chr1g0209661 53.846 104 48 0 21 124 27 130 1.42e-33 124
Msa0856540 MtrunA17_Chr8g0342481 53.704 108 49 1 21 127 12 119 1.46e-33 126
Msa0856540 MtrunA17_Chr2g0309911 49.074 108 55 0 21 128 11 118 1.57e-33 124
Msa0856540 MtrunA17_Chr7g0228891 52.830 106 50 0 20 125 11 116 2.23e-33 122
Msa0856540 MtrunA17_Chr2g0327351 58.000 100 41 1 21 119 12 111 2.42e-33 124
Msa0856540 MtrunA17_Chr2g0311221 52.000 100 48 0 21 120 14 113 4.62e-33 123
Msa0856540 MtrunA17_Chr5g0434571 54.717 106 48 0 20 125 47 152 5.03e-33 124
Msa0856540 MtrunA17_Chr6g0487491 51.724 116 47 2 21 127 12 127 1.14e-32 120
Msa0856540 MtrunA17_Chr1g0168661 54.369 103 47 0 22 124 22 124 1.99e-32 120
Msa0856540 MtrunA17_Chr3g0080861 49.038 104 53 0 21 124 37 140 3.09e-32 124
Msa0856540 MtrunA17_Chr4g0072751 56.000 100 43 1 21 119 12 111 3.42e-32 121
Msa0856540 MtrunA17_Chr7g0269831 51.852 108 52 0 20 127 11 118 3.73e-32 121
Msa0856540 MtrunA17_Chr7g0228231 47.200 125 61 1 16 140 9 128 3.74e-32 117
Msa0856540 MtrunA17_Chr2g0327821 48.624 109 56 0 21 129 6 114 6.87e-32 117
Msa0856540 MtrunA17_Chr5g0397231 49.074 108 55 0 12 119 3 110 9.26e-32 120
Msa0856540 MtrunA17_Chr1g0180391 35.874 223 109 7 21 243 19 207 1.34e-31 117
Msa0856540 MtrunA17_Chr1g0194291 43.137 153 78 2 15 160 15 165 1.62e-31 117
Msa0856540 MtrunA17_Chr3g0099131 48.077 104 54 0 21 124 41 144 2.08e-31 122
Msa0856540 MtrunA17_Chr6g0450101 51.429 105 51 0 21 125 14 118 3.27e-31 115
Msa0856540 MtrunA17_Chr1g0194301 46.218 119 64 0 6 124 18 136 3.46e-31 117
Msa0856540 MtrunA17_Chr8g0354661 47.706 109 55 1 18 124 32 140 2.42e-30 119
Msa0856540 MtrunA17_Chr1g0154031 48.077 104 54 0 21 124 76 179 8.55e-30 116
Msa0856540 MtrunA17_Chr2g0322521 48.571 105 54 0 20 124 28 132 1.07e-29 115
Msa0856540 MtrunA17_Chr1g0192411 46.789 109 58 0 16 124 7 115 1.80e-29 115
Msa0856540 MtrunA17_Chr5g0434871 87.143 70 9 0 83 152 2 71 1.97e-29 106
Msa0856540 MtrunA17_Chr4g0030881 45.378 119 55 2 22 133 8 123 5.45e-29 110
Msa0856540 MtrunA17_Chr5g0440781 45.192 104 56 1 21 123 12 115 2.30e-27 104
Msa0856540 MtrunA17_Chr4g0068921 51.456 103 50 0 21 123 24 126 4.91e-27 103
Msa0856540 MtrunA17_Chr5g0395221 57.692 78 33 0 20 97 11 88 5.00e-27 100
Msa0856540 MtrunA17_Chr5g0440761 45.192 104 56 1 21 123 12 115 7.74e-27 105
Msa0856540 MtrunA17_Chr5g0441141 45.192 104 56 1 21 123 12 115 1.04e-26 105
Msa0856540 MtrunA17_Chr2g0293911 51.456 103 50 0 21 123 24 126 1.22e-26 106
Msa0856540 MtrunA17_Chr7g0247131 49.462 93 46 1 53 145 10 101 2.47e-26 103
Msa0856540 MtrunA17_Chr2g0323321 53.659 82 38 0 20 101 10 91 6.72e-26 98.6
Msa0856540 MtrunA17_Chr5g0441131 41.964 112 64 1 13 123 1 112 8.56e-26 100
Msa0856540 MtrunA17_Chr4g0042611 57.143 77 33 0 21 97 12 88 4.55e-25 95.5
Msa0856540 MtrunA17_Chr4g0008551 40.741 108 63 1 23 130 38 144 1.56e-24 100
Msa0856540 MtrunA17_Chr4g0053431 44.118 102 56 1 23 124 5 105 3.18e-24 98.6
Msa0856540 MtrunA17_Chr5g0429661 41.964 112 64 1 23 134 122 232 3.51e-24 99.8
Msa0856540 MtrunA17_Chr8g0342531 44.762 105 53 1 21 120 12 116 3.90e-24 95.5
Msa0856540 MtrunA17_Chr4g0042501 41.322 121 67 3 4 124 89 205 4.42e-24 100
Msa0856540 MtrunA17_Chr5g0417621 43.137 102 57 1 23 124 134 234 5.66e-24 100
Msa0856540 MtrunA17_Chr5g0401731 37.302 126 78 1 23 148 15 139 8.95e-24 98.2
Msa0856540 MtrunA17_Chr2g0294811 50.000 82 41 0 20 101 11 92 1.17e-23 92.8
Msa0856540 MtrunA17_Chr6g0480581 43.299 97 54 1 23 119 4 99 1.90e-23 95.9
Msa0856540 MtrunA17_Chr3g0133601 44.118 102 56 1 23 124 37 137 2.00e-23 95.5
Msa0856540 MtrunA17_Chr8g0334881 42.609 115 63 2 15 128 4 116 2.76e-23 97.1
Msa0856540 MtrunA17_Chr1g0157731 40.952 105 61 1 23 127 91 194 7.04e-23 98.2
Msa0856540 MtrunA17_Chr3g0139671 40.952 105 61 1 23 127 85 188 8.00e-23 97.8
Msa0856540 MtrunA17_Chr8g0342511 55.263 76 34 0 21 96 12 87 8.17e-23 90.1
Msa0856540 MtrunA17_Chr3g0117511 41.964 112 62 2 23 133 183 292 8.33e-23 97.1
Msa0856540 MtrunA17_Chr3g0125801 38.889 126 71 2 18 143 11 130 9.99e-23 94.7
Msa0856540 MtrunA17_Chr4g0013361 42.609 115 63 3 13 125 1 114 1.22e-22 94.7
Msa0856540 MtrunA17_Chr3g0099141 46.988 83 44 0 21 103 40 122 1.89e-22 90.5
Msa0856540 MtrunA17_Chr7g0254261 44.118 102 56 1 23 124 89 189 3.29e-22 94.4
Msa0856540 MtrunA17_Chr4g0058991 40.367 109 62 2 21 128 207 313 4.74e-22 95.1
Msa0856540 MtrunA17_Chr6g0454921 41.284 109 55 2 23 127 15 118 8.50e-22 90.5
Msa0856540 MtrunA17_Chr6g0460661 33.775 151 89 4 23 173 16 155 1.05e-21 89.0
Msa0856540 MtrunA17_Chr7g0228531 41.284 109 62 2 21 129 218 324 1.59e-21 93.2
Msa0856540 MtrunA17_Chr7g0238631 41.748 103 59 1 23 125 113 214 1.93e-21 93.6
Msa0856540 MtrunA17_Chr7g0238631 34.000 100 64 2 23 121 61 159 8.76e-12 65.1
Msa0856540 MtrunA17_Chr8g0342461 47.778 90 46 1 10 98 1 90 3.17e-21 87.0
Msa0856540 MtrunA17_Chr8g0342471 46.667 90 47 1 10 98 1 90 1.28e-20 85.5
Msa0856540 MtrunA17_Chr7g0238651 43.564 101 55 1 26 124 10 110 1.81e-20 89.7
Msa0856540 MtrunA17_Chr6g0460671 38.525 122 74 1 3 124 79 199 2.63e-20 89.0
Msa0856540 MtrunA17_Chr5g0434881 89.744 39 4 0 17 55 3 41 6.89e-20 80.9
Msa0856540 MtrunA17_Chr3g0093811 50.685 73 36 0 53 125 14 86 4.27e-19 84.3
Msa0856540 MtrunA17_Chr5g0425591 41.758 91 52 1 13 102 1 91 5.77e-19 79.7
Msa0856540 MtrunA17_Chr5g0437321 38.835 103 54 2 23 121 19 116 2.17e-18 82.8
Msa0856540 MtrunA17_Chr7g0228401 41.573 89 51 1 34 122 290 377 7.93e-17 80.1
Msa0856540 MtrunA17_Chr5g0397841 35.238 105 67 1 14 118 101 204 1.44e-16 79.3
Msa0856540 MtrunA17_Chr6g0453751 41.935 93 45 2 19 102 18 110 1.79e-16 74.3
Msa0856540 MtrunA17_Chr7g0228481 36.111 108 67 2 15 122 212 317 7.41e-16 77.0
Msa0856540 MtrunA17_Chr1g0177901 45.455 77 38 1 57 129 27 103 3.69e-15 72.4
Msa0856540 MtrunA17_Chr2g0322831 66.667 39 13 0 79 117 34 72 1.32e-14 67.8
Msa0856540 MtrunA17_Chr5g0416341 34.188 117 76 1 8 124 11 126 1.66e-14 73.2
Msa0856540 MtrunA17_Chr7g0233061 32.308 130 85 2 16 145 173 299 2.13e-14 72.4
Msa0856540 MtrunA17_Chr8g0362231 31.250 160 99 4 8 160 6 161 1.48e-13 70.1
Msa0856540 MtrunA17_Chr3g0104491 33.333 87 52 2 62 142 1 87 8.82e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0856540 AT1G66370.1 51.818 220 73 5 19 221 6 209 4.62e-63 199
Msa0856540 AT1G66390.1 67.114 149 43 2 13 156 1 148 2.94e-54 176
Msa0856540 AT1G56650.1 49.367 237 90 7 13 237 1 219 9.88e-54 175
Msa0856540 AT1G66380.1 79.464 112 22 1 13 124 1 111 9.19e-53 169
Msa0856540 AT3G13540.1 45.946 185 84 5 3 183 1 173 5.74e-49 162
Msa0856540 AT5G14750.1 56.637 113 49 0 22 134 17 129 8.07e-44 148
Msa0856540 AT5G40330.1 60.577 104 41 0 22 125 13 116 1.29e-43 148
Msa0856540 AT1G22640.1 61.321 106 41 0 23 128 14 119 1.95e-43 149
Msa0856540 AT4G38620.1 53.226 124 58 0 23 146 14 137 8.01e-43 148
Msa0856540 AT4G09460.1 43.094 181 93 4 23 201 14 186 9.42e-43 146
Msa0856540 AT3G27920.1 59.434 106 43 0 22 127 15 120 1.32e-42 145
Msa0856540 AT5G16770.4 39.378 193 108 2 20 212 11 194 2.30e-42 148
Msa0856540 AT5G16770.3 39.378 193 108 2 20 212 11 194 2.30e-42 148
Msa0856540 AT5G16770.1 39.378 193 108 2 20 212 11 194 4.21e-42 147
Msa0856540 AT5G16770.2 39.378 193 108 2 20 212 11 194 4.21e-42 147
Msa0856540 AT5G52600.1 58.261 115 48 0 21 135 12 126 7.19e-42 143
Msa0856540 AT2G16720.1 59.434 106 43 0 23 128 14 119 1.04e-41 144
Msa0856540 AT5G35550.1 53.788 132 51 2 13 139 1 127 2.90e-41 143
Msa0856540 AT3G23250.1 50.794 126 56 1 20 139 11 136 4.80e-41 143
Msa0856540 AT4G21440.1 58.879 107 44 0 20 126 11 117 7.81e-41 144
Msa0856540 AT3G02940.2 57.944 107 45 0 20 126 11 117 7.81e-41 143
Msa0856540 AT3G02940.1 57.944 107 45 0 20 126 11 117 1.30e-40 143
Msa0856540 AT3G02940.3 57.944 107 45 0 20 126 11 117 1.30e-40 143
Msa0856540 AT1G35515.1 39.779 181 98 2 21 200 12 182 2.07e-40 139
Msa0856540 AT4G28110.1 57.009 107 46 0 20 126 11 117 2.45e-40 141
Msa0856540 AT4G17785.2 59.259 108 44 0 19 126 11 118 2.80e-40 143
Msa0856540 AT4G17785.1 59.259 108 44 0 19 126 11 118 2.86e-40 143
Msa0856540 AT3G61250.1 52.991 117 55 0 20 136 11 127 4.25e-40 141
Msa0856540 AT5G10280.1 55.856 111 49 0 16 126 7 117 8.32e-40 141
Msa0856540 AT4G34990.1 57.547 106 45 0 23 128 14 119 1.16e-39 139
Msa0856540 AT3G47600.1 60.377 106 42 0 20 125 11 116 1.47e-39 140
Msa0856540 AT1G74080.1 53.571 112 52 0 17 128 8 119 1.50e-39 140
Msa0856540 AT5G54230.1 58.491 106 44 0 21 126 12 117 1.83e-39 140
Msa0856540 AT5G60890.1 41.011 178 99 2 17 188 8 185 2.27e-39 139
Msa0856540 AT5G61420.2 57.009 107 46 0 20 126 11 117 2.82e-39 140
Msa0856540 AT4G05100.1 55.455 110 49 0 17 126 9 118 3.19e-39 139
Msa0856540 AT5G07690.1 55.963 109 48 0 20 128 11 119 3.36e-39 140
Msa0856540 AT1G18570.1 55.046 109 49 0 20 128 12 120 3.43e-39 140
Msa0856540 AT5G15310.1 51.969 127 57 1 20 142 11 137 4.34e-39 139
Msa0856540 AT5G07700.1 57.009 107 46 0 20 126 11 117 4.61e-39 139
Msa0856540 AT5G07700.2 57.009 107 46 0 20 126 11 117 4.61e-39 139
Msa0856540 AT5G15310.2 51.969 127 57 1 20 142 11 137 5.46e-39 139
Msa0856540 AT5G65230.1 54.955 111 50 0 16 126 7 117 6.49e-39 138
Msa0856540 AT5G15310.4 51.969 127 57 1 20 142 11 137 6.76e-39 136
Msa0856540 AT2G31180.1 56.604 106 46 0 20 125 11 116 1.24e-38 136
Msa0856540 AT1G06180.1 56.604 106 46 0 20 125 11 116 1.37e-38 135
Msa0856540 AT1G74650.1 57.798 109 46 0 21 129 12 120 1.68e-38 138
Msa0856540 AT5G62470.2 55.172 116 52 0 20 135 11 126 1.72e-38 138
Msa0856540 AT3G28910.1 59.434 106 43 0 20 125 11 116 2.30e-38 137
Msa0856540 AT3G01140.2 45.070 142 78 0 20 161 11 152 2.82e-38 137
Msa0856540 AT4G01680.3 57.407 108 46 0 21 128 12 119 4.70e-38 134
Msa0856540 AT3G01140.1 45.070 142 78 0 20 161 54 195 5.03e-38 138
Msa0856540 AT5G49330.1 54.630 108 49 0 20 127 11 118 5.09e-38 137
Msa0856540 AT3G30210.1 49.635 137 68 1 20 156 26 161 6.79e-38 135
Msa0856540 AT5G57620.1 57.143 112 47 1 21 131 12 123 1.17e-37 135
Msa0856540 AT4G01680.1 57.407 108 46 0 21 128 12 119 1.34e-37 135
Msa0856540 AT1G34670.1 56.075 107 47 0 20 126 11 117 2.19e-37 135
Msa0856540 AT5G56110.1 58.095 105 44 0 21 125 12 116 3.79e-37 134
Msa0856540 AT1G08810.1 56.604 106 46 0 20 125 11 116 4.26e-37 133
Msa0856540 AT5G62470.1 55.172 116 51 1 20 135 11 125 6.56e-37 134
Msa0856540 AT1G16490.1 52.336 107 51 0 21 127 14 120 6.90e-37 132
Msa0856540 AT1G57560.2 54.630 108 49 0 21 128 12 119 9.11e-37 132
Msa0856540 AT3G62610.1 54.717 106 48 0 20 125 11 116 1.09e-36 133
Msa0856540 AT1G57560.1 54.630 108 49 0 21 128 12 119 1.12e-36 132
Msa0856540 AT2G47460.1 52.830 106 50 0 20 125 11 116 1.24e-36 134
Msa0856540 AT5G65790.1 50.407 123 60 1 21 142 12 134 1.77e-36 133
Msa0856540 AT3G49690.1 53.097 113 52 1 21 132 12 124 2.33e-36 132
Msa0856540 AT4G37780.1 52.252 111 52 1 20 129 11 121 3.28e-36 131
Msa0856540 AT3G13890.2 54.206 107 49 0 21 127 12 118 3.54e-36 132
Msa0856540 AT5G26660.1 56.190 105 46 0 21 125 12 116 3.93e-36 132
Msa0856540 AT1G74430.1 52.294 109 52 0 20 128 11 119 4.19e-36 130
Msa0856540 AT1G09540.1 53.704 108 50 0 21 128 12 119 1.34e-35 131
Msa0856540 AT1G66380.2 74.157 89 22 1 13 101 1 88 1.71e-35 123
Msa0856540 AT5G23000.1 57.009 107 45 1 21 126 12 118 1.84e-35 130
Msa0856540 AT1G79180.1 50.943 106 52 0 21 126 14 119 4.44e-35 128
Msa0856540 AT5G12870.1 50.459 109 54 0 17 125 14 122 9.59e-35 127
Msa0856540 AT4G12350.1 55.660 106 47 0 21 126 12 117 1.13e-34 127
Msa0856540 AT3G28470.1 55.556 99 44 0 21 119 12 110 1.52e-34 127
Msa0856540 AT4G22680.1 43.709 151 80 2 20 166 11 160 2.03e-34 125
Msa0856540 AT3G48920.1 47.458 118 61 1 22 138 19 136 3.52e-34 125
Msa0856540 AT4G01680.2 51.667 120 46 1 21 128 12 131 4.22e-34 127
Msa0856540 AT1G56160.1 51.887 106 51 0 21 126 14 119 5.45e-34 125
Msa0856540 AT4G25560.1 55.340 103 46 0 22 124 11 113 6.04e-34 125
Msa0856540 AT3G12720.1 50.000 108 54 0 21 128 22 129 6.90e-34 125
Msa0856540 AT3G12820.1 50.000 108 54 0 21 128 14 121 7.35e-34 123
Msa0856540 AT3G24310.1 55.556 108 48 0 20 127 17 124 8.01e-34 124
Msa0856540 AT5G62320.1 44.295 149 62 3 20 152 12 155 9.48e-34 123
Msa0856540 AT3G01530.1 53.333 105 49 0 21 125 25 129 1.71e-33 121
Msa0856540 AT2G32460.1 49.057 106 54 0 19 124 16 121 2.62e-33 127
Msa0856540 AT2G32460.2 49.057 106 54 0 19 124 4 109 2.70e-33 127
Msa0856540 AT1G18710.1 51.818 110 52 1 20 129 11 119 3.21e-33 122
Msa0856540 AT3G46130.1 47.863 117 61 0 13 129 1 117 3.65e-33 122
Msa0856540 AT2G36890.1 53.704 108 49 1 21 127 12 119 3.73e-33 123
Msa0856540 AT3G13890.1 50.000 116 49 1 21 127 12 127 4.11e-33 124
Msa0856540 AT1G63910.1 52.381 105 50 0 21 125 12 116 4.33e-33 124
Msa0856540 AT2G36890.2 53.704 108 49 1 21 127 53 160 6.07e-33 123
Msa0856540 AT3G53200.1 51.786 112 54 0 13 124 1 112 7.62e-33 120
Msa0856540 AT4G13480.1 55.340 103 46 0 22 124 7 109 8.29e-33 121
Msa0856540 AT5G59780.3 50.926 108 53 0 22 129 9 116 8.84e-33 120
Msa0856540 AT1G66230.1 44.928 138 66 1 20 147 11 148 1.00e-32 121
Msa0856540 AT3G08500.1 52.381 105 50 0 21 125 30 134 1.46e-32 122
Msa0856540 AT5G40350.1 42.361 144 79 1 21 160 17 160 1.62e-32 119
Msa0856540 AT5G16600.1 43.056 144 70 1 20 151 11 154 1.99e-32 122
Msa0856540 AT5G52260.1 52.500 120 56 1 14 133 6 124 2.41e-32 120
Msa0856540 AT1G25340.1 55.340 103 46 0 22 124 19 121 2.45e-32 120
Msa0856540 AT5G55020.1 50.485 103 51 0 21 123 26 128 3.96e-32 124
Msa0856540 AT4G26930.1 49.515 103 52 0 21 123 19 121 5.04e-32 122
Msa0856540 AT2G47190.1 51.923 104 50 0 21 124 20 123 5.52e-32 119
Msa0856540 AT5G14340.1 51.887 106 51 0 20 125 23 128 9.55e-32 119
Msa0856540 AT1G48000.1 55.340 103 46 0 21 123 32 134 1.11e-31 117
Msa0856540 AT5G14750.3 59.770 87 32 1 48 134 12 95 1.61e-31 115
Msa0856540 AT3G27810.1 40.667 150 78 2 21 160 20 168 2.28e-31 116
Msa0856540 AT1G66380.3 83.333 72 12 0 53 124 7 78 2.85e-31 112
Msa0856540 AT1G68320.1 54.808 104 47 0 21 124 19 122 4.63e-31 117
Msa0856540 AT2G26960.1 46.364 110 59 0 14 123 13 122 5.09e-31 120
Msa0856540 AT5G06100.1 45.714 105 57 0 20 124 31 135 1.98e-30 119
Msa0856540 AT5G06100.5 45.714 105 57 0 20 124 31 135 5.10e-30 118
Msa0856540 AT5G06100.2 45.714 105 57 0 20 124 31 135 5.10e-30 118
Msa0856540 AT5G06100.3 45.714 105 57 0 20 124 31 135 5.10e-30 118
Msa0856540 AT5G06100.4 45.714 105 57 0 20 124 31 135 5.10e-30 118
Msa0856540 AT3G11440.2 43.750 112 59 1 17 124 33 144 1.30e-29 116
Msa0856540 AT3G11440.3 42.727 110 63 0 15 124 35 144 2.25e-29 116
Msa0856540 AT3G11440.4 42.727 110 63 0 15 124 35 144 2.25e-29 116
Msa0856540 AT3G11440.1 42.727 110 63 0 15 124 35 144 2.25e-29 116
Msa0856540 AT1G25340.2 53.398 103 43 1 22 124 19 116 5.40e-29 111
Msa0856540 AT1G25340.3 53.398 103 43 1 22 124 19 116 8.32e-29 112
Msa0856540 AT1G79180.2 36.424 151 63 1 21 138 14 164 1.02e-28 112
Msa0856540 AT1G69560.1 37.241 145 87 2 16 160 100 240 2.78e-28 110
Msa0856540 AT1G69560.2 37.241 145 87 2 16 160 116 256 3.07e-28 111
Msa0856540 AT5G35550.2 58.140 86 31 1 54 139 50 130 1.69e-27 107
Msa0856540 AT3G53200.2 61.039 77 30 0 48 124 3 79 1.01e-26 103
Msa0856540 AT5G26660.2 55.172 87 38 1 52 138 12 97 5.75e-26 104
Msa0856540 AT3G47600.2 65.278 72 25 0 54 125 39 110 5.89e-26 104
Msa0856540 AT5G49620.1 52.427 103 49 0 21 123 26 128 1.73e-25 103
Msa0856540 AT2G26950.1 43.299 97 55 0 23 119 18 114 2.63e-25 103
Msa0856540 AT3G06490.1 51.456 103 50 0 21 123 19 121 3.45e-25 102
Msa0856540 AT5G11510.3 43.810 105 58 1 23 127 81 184 3.68e-25 105
Msa0856540 AT5G11510.1 43.810 105 58 1 23 127 81 184 3.68e-25 105
Msa0856540 AT5G11510.4 43.810 105 58 1 23 127 81 184 3.68e-25 105
Msa0856540 AT5G11510.2 43.810 105 58 1 23 127 81 184 6.44e-25 104
Msa0856540 AT5G11510.5 43.810 105 58 1 23 127 81 184 6.87e-25 104
Msa0856540 AT1G26780.1 37.209 129 75 2 23 151 98 220 7.94e-25 100
Msa0856540 AT4G18770.1 42.241 116 66 1 14 129 208 322 1.20e-24 102
Msa0856540 AT1G17950.1 39.316 117 65 2 23 139 5 115 1.66e-24 99.0
Msa0856540 AT1G26780.2 37.209 129 75 2 23 151 98 220 1.66e-24 101
Msa0856540 AT3G12820.2 55.556 72 32 0 57 128 2 73 2.28e-24 97.4
Msa0856540 AT5G59780.2 56.410 78 34 0 52 129 18 95 2.44e-24 97.8
Msa0856540 AT3G46130.4 56.410 78 34 0 52 129 18 95 4.89e-24 97.4
Msa0856540 AT3G09230.1 41.880 117 64 2 19 132 48 163 6.49e-24 100
Msa0856540 AT3G46130.3 55.844 77 34 0 53 129 9 85 1.03e-23 96.3
Msa0856540 AT5G14750.4 60.294 68 27 0 67 134 1 68 1.15e-23 94.0
Msa0856540 AT5G14750.2 60.294 68 27 0 67 134 1 68 1.15e-23 94.0
Msa0856540 AT3G55730.1 44.340 106 58 1 19 124 52 156 1.47e-23 99.4
Msa0856540 AT3G09370.1 43.137 102 57 1 23 124 130 230 2.62e-23 99.4
Msa0856540 AT3G09370.2 43.137 102 57 1 23 124 135 235 2.75e-23 99.4
Msa0856540 AT2G39880.1 45.098 102 55 1 23 124 50 150 3.00e-23 97.8
Msa0856540 AT3G29020.1 35.461 141 86 3 15 152 57 195 3.06e-23 95.5
Msa0856540 AT5G17800.1 29.167 192 124 3 18 201 88 275 3.10e-23 97.1
Msa0856540 AT3G09370.3 43.137 102 57 1 23 124 143 243 4.20e-23 98.6
Msa0856540 AT4G37260.1 43.396 106 51 2 23 124 13 113 5.19e-23 96.7
Msa0856540 AT3G60460.1 41.739 115 64 2 15 128 5 117 5.32e-23 96.3
Msa0856540 AT1G71030.2 60.294 68 27 0 59 126 4 71 6.02e-23 93.2
Msa0856540 AT1G71030.1 60.294 68 27 0 59 126 18 85 8.12e-23 93.2
Msa0856540 AT3G29020.2 35.461 141 86 3 15 152 59 197 9.08e-23 95.5
Msa0856540 AT4G33450.1 38.462 130 74 3 22 150 18 142 1.00e-22 94.4
Msa0856540 AT2G23290.1 43.396 106 51 2 23 124 13 113 1.57e-22 95.1
Msa0856540 AT1G73410.1 44.340 106 50 2 23 124 6 106 1.88e-22 93.6
Msa0856540 AT5G58850.1 35.714 126 80 1 10 135 92 216 2.43e-22 95.9
Msa0856540 AT1G73410.2 44.340 106 50 2 23 124 6 106 3.32e-22 92.0
Msa0856540 AT2G37630.1 42.373 118 66 1 26 141 7 124 3.94e-22 94.7
Msa0856540 AT3G27785.1 39.496 119 71 1 16 134 182 299 4.15e-22 95.5
Msa0856540 AT5G02320.1 40.777 103 60 1 23 125 127 228 4.57e-22 95.9
Msa0856540 AT5G02320.2 40.777 103 60 1 23 125 127 228 4.57e-22 95.9
Msa0856540 AT5G49620.2 46.154 117 49 1 21 123 26 142 5.83e-22 93.6
Msa0856540 AT5G02320.3 40.777 103 60 1 23 125 67 168 7.03e-22 95.1
Msa0856540 AT5G11050.1 30.120 166 115 1 15 180 97 261 7.20e-22 94.7
Msa0856540 AT4G32730.1 33.333 141 88 2 23 163 87 221 1.29e-21 94.7
Msa0856540 AT4G32730.5 33.333 141 88 2 23 163 87 221 1.48e-21 94.7
Msa0856540 AT4G32730.4 33.333 141 88 2 23 163 87 221 1.48e-21 94.7
Msa0856540 AT4G32730.3 33.333 141 88 2 23 163 87 221 1.48e-21 94.7
Msa0856540 AT4G32730.2 33.333 141 88 2 23 163 87 221 1.48e-21 94.7
Msa0856540 AT1G22640.3 58.065 62 26 0 67 128 1 62 1.55e-21 90.1
Msa0856540 AT5G67300.1 43.137 102 57 1 23 124 6 106 1.57e-21 92.0
Msa0856540 AT5G40350.2 40.541 111 62 1 54 160 5 115 2.63e-21 88.6
Msa0856540 AT3G50060.1 35.294 136 79 2 23 150 6 140 3.64e-21 91.3
Msa0856540 AT3G23250.2 50.633 79 33 1 67 139 1 79 6.05e-21 89.0
Msa0856540 AT3G27810.2 39.316 117 60 2 54 160 4 119 1.03e-20 87.0
Msa0856540 AT5G40360.1 39.806 103 61 1 21 123 156 257 1.46e-19 87.4
Msa0856540 AT5G39700.1 38.739 111 66 2 9 119 43 151 2.16e-19 84.0
Msa0856540 AT1G18960.1 40.566 106 54 3 23 125 10 109 8.79e-19 84.7
Msa0856540 AT2G25230.1 37.383 107 66 1 17 123 20 125 3.71e-17 79.0
Msa0856540 AT4G00540.2 37.500 112 58 3 21 125 101 207 8.81e-17 80.1
Msa0856540 AT4G00540.2 30.952 126 75 4 18 131 41 166 4.91e-11 63.2
Msa0856540 AT4G00540.1 37.500 112 58 3 21 125 99 205 1.35e-16 79.7
Msa0856540 AT4G00540.1 28.873 142 89 4 2 131 23 164 1.51e-11 64.7
Msa0856540 AT5G40430.1 35.514 107 67 2 17 123 48 152 5.80e-15 73.2
Msa0856540 AT2G02820.1 33.600 125 81 2 11 135 18 140 1.19e-13 70.9
Msa0856540 AT2G02820.2 33.600 125 81 2 11 135 18 140 1.21e-13 70.9
Msa0856540 AT2G02820.3 33.600 125 81 2 11 135 18 140 1.91e-13 69.7
Msa0856540 AT3G18100.4 35.922 103 65 1 15 117 377 478 8.18e-13 68.6
Msa0856540 AT3G18100.1 35.922 103 65 1 15 117 538 639 8.58e-13 68.6
Msa0856540 AT3G18100.3 35.922 103 65 1 15 117 490 591 9.26e-13 68.6
Msa0856540 AT3G18100.2 35.922 103 65 1 15 117 325 426 1.01e-12 68.6
Msa0856540 AT1G74650.3 63.636 44 16 0 86 129 1 44 1.50e-12 66.2
Msa0856540 AT1G14350.2 33.000 100 66 1 25 124 27 125 2.57e-12 67.0
Msa0856540 AT1G14350.1 33.000 100 66 1 25 124 27 125 2.57e-12 67.0
Msa0856540 AT4G25560.2 60.000 45 18 0 80 124 3 47 3.79e-12 64.7
Msa0856540 AT5G59780.1 57.447 47 20 0 83 129 5 51 8.10e-12 62.8
Msa0856540 AT3G28910.2 65.000 40 14 0 86 125 1 40 1.36e-11 63.5
Msa0856540 AT3G46130.2 57.447 47 20 0 83 129 5 51 1.39e-11 62.8

Find 49 sgRNAs with CRISPR-Local

Find 172 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAGTTCTCAACATTTAATT+TGG 0.173284 5_4:-51311127 None:intergenic
TTTAGATGATATCTTAAATT+AGG 0.200033 5_4:+51311218 Msa0856540:CDS
GTACTGTCGGTGATTGCTTC+TGG 0.240964 5_4:+51311166 Msa0856540:CDS
CTAATGATGTGAAGAATTAT+TGG 0.279813 5_4:+51310737 Msa0856540:CDS
TGAGTTTGCATGCTTTCTTT+AGG 0.316758 5_4:-51310820 None:intergenic
AGAAGTATGGTGAAGGAAAA+TGG 0.332221 5_4:+51309666 Msa0856540:CDS
TACTGTCGGTGATTGCTTCT+GGG 0.333499 5_4:+51311167 Msa0856540:CDS
CAATCTCCATCATCATTAAT+TGG 0.334452 5_4:-51310988 None:intergenic
TTGATTGCTGCAAGACTTCC+GGG 0.345324 5_4:+51310706 Msa0856540:CDS
ATGAAGTTGATATGATTCTA+AGG 0.352752 5_4:+51309899 Msa0856540:CDS
CATTATATACCTGCTCTTTG+TGG 0.372515 5_4:-51309698 None:intergenic
TGTACTTGGCAGGATTAAAT+AGG 0.374086 5_4:+51309803 Msa0856540:intron
ATTGATTGCTGCAAGACTTC+CGG 0.392491 5_4:+51310705 Msa0856540:CDS
TTTGTTGAAACCGTCACTAT+TGG 0.396668 5_4:-51310922 None:intergenic
TTTAATTTGGAATATTCCTC+TGG 0.409911 5_4:-51311114 None:intergenic
GAAGCAATCACCGACAGTAC+TGG 0.437278 5_4:-51311163 None:intergenic
CACACATTTGAGAAAGAAGA+TGG 0.443036 5_4:+51310762 Msa0856540:CDS
AAGGCTTGTATACAGAAGTA+TGG 0.446225 5_4:+51309653 Msa0856540:CDS
TACACAAGCTCCTAGGAAAC+AGG 0.453563 5_4:+51309923 Msa0856540:CDS
TGGACAAAAGCAAGTGCATA+TGG 0.458738 5_4:+51309568 Msa0856540:CDS
ATTCTACCAATTAATGATGA+TGG 0.474075 5_4:+51310982 Msa0856540:CDS
AACGTGAGCAATGACAAAAT+TGG 0.485163 5_4:+51311072 Msa0856540:CDS
AAGAGAGTCAAATTCACAAA+TGG 0.496518 5_4:-51311196 None:intergenic
GTTGAGAACTTTCTTACTGA+AGG 0.497950 5_4:+51311138 Msa0856540:CDS
AGCATACATACCTGTTTCCT+AGG 0.499222 5_4:-51309933 None:intergenic
CTCATGCCTTTGTTTGTCTG+TGG 0.499993 5_4:+51309548 None:intergenic
CTAAGGTTACACAAGCTCCT+AGG 0.501800 5_4:+51309916 Msa0856540:CDS
AAGACTAGAGGTGTGAGAAA+AGG 0.510939 5_4:+51309599 Msa0856540:CDS
AAAACTTTCTCTATTGATGG+TGG 0.518195 5_4:-51309869 None:intergenic
AAACTTTCTCTATTGATGGT+GGG 0.522978 5_4:-51309868 None:intergenic
AAAAGGTGCATGGACATATG+AGG 0.529512 5_4:+51309616 Msa0856540:CDS
AAGCAATCACCGACAGTACT+GGG 0.544779 5_4:-51311162 None:intergenic
CATTTAGTTCCACAAAGAGC+AGG 0.555403 5_4:+51309689 Msa0856540:CDS
TGGCAGGATTAAATAGGTGC+CGG 0.572085 5_4:+51309809 Msa0856540:intron
CAACACTGTCTTCCATGTGG+TGG 0.573400 5_4:+51311037 Msa0856540:CDS
GCCGGAAAAGCTGTAGATTG+AGG 0.577176 5_4:+51309827 Msa0856540:CDS
GTGACGGTTTCAACAAATGA+TGG 0.577862 5_4:+51310928 Msa0856540:CDS
AACACTGTCTTCCATGTGGT+GGG 0.581039 5_4:+51311038 Msa0856540:CDS
ACATCATTAGCTGTTCTACC+CGG 0.596176 5_4:-51310724 None:intergenic
TTATATTTCTCATTTAACCA+TGG 0.601242 5_4:-51310886 None:intergenic
TGAGGAAGACAAGCTACTCA+AGG 0.611389 5_4:+51309634 Msa0856540:CDS
TGTATACAGAAGTATGGTGA+AGG 0.613440 5_4:+51309659 Msa0856540:CDS
CAACAAACTCTCCCACCACA+TGG 0.617722 5_4:-51311049 None:intergenic
GAGGTGTGAGAAAAGGTGCA+TGG 0.627735 5_4:+51309606 Msa0856540:CDS
ATGCTCTTTACTATTACCAG+AGG 0.637280 5_4:+51311098 Msa0856540:CDS
ACTGAAGGACCCAGTACTGT+CGG 0.653910 5_4:+51311153 Msa0856540:CDS
GGAAAAGCTGTAGATTGAGG+TGG 0.672945 5_4:+51309830 Msa0856540:CDS
ATGGAGAAGAGTAAGACTAG+AGG 0.674464 5_4:+51309587 Msa0856540:CDS
ATTCAACACTGTCTTCCATG+TGG 0.732666 5_4:+51311034 Msa0856540:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AACAAATAAACTTACATTTA+AGG - chr5_4:51310039-51310058 None:intergenic 15.0%
!!! ATTTAAAATTAGTCCTTTTT+CGG - chr5_4:51310230-51310249 None:intergenic 15.0%
!! TATTAATCAAAGGTTTATTT+GGG - chr5_4:51310282-51310301 None:intergenic 15.0%
!! TATTCTTAAAATAGTTTAAG+TGG - chr5_4:51310629-51310648 None:intergenic 15.0%
!! AACAAATAAACTTACATTTA+AGG - chr5_4:51310039-51310058 None:intergenic 15.0%
!!! ATTTAAAATTAGTCCTTTTT+CGG - chr5_4:51310230-51310249 None:intergenic 15.0%
!! TATTAATCAAAGGTTTATTT+GGG - chr5_4:51310282-51310301 None:intergenic 15.0%
!! TATTCTTAAAATAGTTTAAG+TGG - chr5_4:51310629-51310648 None:intergenic 15.0%
!! TATCTAATTAAATGACAACT+TGG - chr5_4:51309966-51309985 None:intergenic 20.0%
!! GTGAAATATTATTGATAAAG+TGG - chr5_4:51310167-51310186 None:intergenic 20.0%
!!! TTTAAAATTAGTCCTTTTTC+GGG - chr5_4:51310229-51310248 None:intergenic 20.0%
!! GTATTAATCAAAGGTTTATT+TGG - chr5_4:51310283-51310302 None:intergenic 20.0%
!! TAACTAGTAGTATTAATCAA+AGG - chr5_4:51310292-51310311 None:intergenic 20.0%
!! CTAAGAGATATTCATAAAAA+AGG + chr5_4:51310324-51310343 Msa0856540:intron 20.0%
!! TAAATGAGTGTATAAAAAGT+TGG + chr5_4:51310523-51310542 Msa0856540:intron 20.0%
!! AAATGAGTGTATAAAAAGTT+GGG + chr5_4:51310524-51310543 Msa0856540:intron 20.0%
!! TTATATTTCTCATTTAACCA+TGG - chr5_4:51310889-51310908 None:intergenic 20.0%
!! AAAGTTCTCAACATTTAATT+TGG - chr5_4:51311130-51311149 None:intergenic 20.0%
!! TATCTAATTAAATGACAACT+TGG - chr5_4:51309966-51309985 None:intergenic 20.0%
!! GTGAAATATTATTGATAAAG+TGG - chr5_4:51310167-51310186 None:intergenic 20.0%
!!! TTTAAAATTAGTCCTTTTTC+GGG - chr5_4:51310229-51310248 None:intergenic 20.0%
!! GTATTAATCAAAGGTTTATT+TGG - chr5_4:51310283-51310302 None:intergenic 20.0%
!! TAACTAGTAGTATTAATCAA+AGG - chr5_4:51310292-51310311 None:intergenic 20.0%
!! CTAAGAGATATTCATAAAAA+AGG + chr5_4:51310324-51310343 Msa0856540:intron 20.0%
!! TAAATGAGTGTATAAAAAGT+TGG + chr5_4:51310523-51310542 Msa0856540:intron 20.0%
!! AAATGAGTGTATAAAAAGTT+GGG + chr5_4:51310524-51310543 Msa0856540:intron 20.0%
!! TTATATTTCTCATTTAACCA+TGG - chr5_4:51310889-51310908 None:intergenic 20.0%
!! AAAGTTCTCAACATTTAATT+TGG - chr5_4:51311130-51311149 None:intergenic 20.0%
!! AAATACTTGTTACATGTACT+TGG + chr5_4:51309789-51309808 Msa0856540:intron 25.0%
! AGAAAAACTTTCTCTATTGA+TGG - chr5_4:51309875-51309894 None:intergenic 25.0%
!!! ATGAAGTTGATATGATTCTA+AGG + chr5_4:51309899-51309918 Msa0856540:CDS 25.0%
!! AATTCAAATTTTCTCGAAGA+TGG + chr5_4:51310116-51310135 Msa0856540:intron 25.0%
!! ATTCAAATTTTCTCGAAGAT+GGG + chr5_4:51310117-51310136 Msa0856540:intron 25.0%
! GATAAAGTGGCATTATATAT+TGG - chr5_4:51310154-51310173 None:intergenic 25.0%
! TCAAGATGTATACATCATAT+AGG - chr5_4:51310408-51310427 None:intergenic 25.0%
! AATGAGTGTATAAAAAGTTG+GGG + chr5_4:51310525-51310544 Msa0856540:intron 25.0%
! CTAATGATGTGAAGAATTAT+TGG + chr5_4:51310737-51310756 Msa0856540:CDS 25.0%
! ATTCTACCAATTAATGATGA+TGG + chr5_4:51310982-51311001 Msa0856540:CDS 25.0%
!!! AGTGTTGAATTTTCAAGATA+TGG - chr5_4:51311024-51311043 None:intergenic 25.0%
!!! TTTAATTTGGAATATTCCTC+TGG - chr5_4:51311117-51311136 None:intergenic 25.0%
!! AAATACTTGTTACATGTACT+TGG + chr5_4:51309789-51309808 Msa0856540:intron 25.0%
! AGAAAAACTTTCTCTATTGA+TGG - chr5_4:51309875-51309894 None:intergenic 25.0%
!!! ATGAAGTTGATATGATTCTA+AGG + chr5_4:51309899-51309918 Msa0856540:CDS 25.0%
!! AATTCAAATTTTCTCGAAGA+TGG + chr5_4:51310116-51310135 Msa0856540:intron 25.0%
!! ATTCAAATTTTCTCGAAGAT+GGG + chr5_4:51310117-51310136 Msa0856540:intron 25.0%
! GATAAAGTGGCATTATATAT+TGG - chr5_4:51310154-51310173 None:intergenic 25.0%
! TCAAGATGTATACATCATAT+AGG - chr5_4:51310408-51310427 None:intergenic 25.0%
! AATGAGTGTATAAAAAGTTG+GGG + chr5_4:51310525-51310544 Msa0856540:intron 25.0%
! CTAATGATGTGAAGAATTAT+TGG + chr5_4:51310737-51310756 Msa0856540:CDS 25.0%
! ATTCTACCAATTAATGATGA+TGG + chr5_4:51310982-51311001 Msa0856540:CDS 25.0%
!!! AGTGTTGAATTTTCAAGATA+TGG - chr5_4:51311024-51311043 None:intergenic 25.0%
!!! TTTAATTTGGAATATTCCTC+TGG - chr5_4:51311117-51311136 None:intergenic 25.0%
! AAACTTTCTCTATTGATGGT+GGG - chr5_4:51309871-51309890 None:intergenic 30.0%
AAAACTTTCTCTATTGATGG+TGG - chr5_4:51309872-51309891 None:intergenic 30.0%
! CAATAGAGAAAGTTTTTCTG+AGG + chr5_4:51309876-51309895 Msa0856540:CDS 30.0%
!!! AGCTTGTTTTGTAATCTGAA+GGG + chr5_4:51310089-51310108 Msa0856540:intron 30.0%
AGGACAAGTGTCTTAAAATA+TGG + chr5_4:51310344-51310363 Msa0856540:intron 30.0%
GGACAAGTGTCTTAAAATAT+GGG + chr5_4:51310345-51310364 Msa0856540:intron 30.0%
GACAAGTGTCTTAAAATATG+GGG + chr5_4:51310346-51310365 Msa0856540:intron 30.0%
ACAAGTGTCTTAAAATATGG+GGG + chr5_4:51310347-51310366 Msa0856540:intron 30.0%
TGGGGGAAATCAATATTAAA+TGG + chr5_4:51310364-51310383 Msa0856540:intron 30.0%
! TTTTGTGAAACCAATAGTGA+CGG + chr5_4:51310912-51310931 Msa0856540:CDS 30.0%
CAATCTCCATCATCATTAAT+TGG - chr5_4:51310991-51311010 None:intergenic 30.0%
AAGAGAGTCAAATTCACAAA+TGG - chr5_4:51311199-51311218 None:intergenic 30.0%
! AAACTTTCTCTATTGATGGT+GGG - chr5_4:51309871-51309890 None:intergenic 30.0%
AAAACTTTCTCTATTGATGG+TGG - chr5_4:51309872-51309891 None:intergenic 30.0%
! CAATAGAGAAAGTTTTTCTG+AGG + chr5_4:51309876-51309895 Msa0856540:CDS 30.0%
!!! AGCTTGTTTTGTAATCTGAA+GGG + chr5_4:51310089-51310108 Msa0856540:intron 30.0%
AGGACAAGTGTCTTAAAATA+TGG + chr5_4:51310344-51310363 Msa0856540:intron 30.0%
GGACAAGTGTCTTAAAATAT+GGG + chr5_4:51310345-51310364 Msa0856540:intron 30.0%
GACAAGTGTCTTAAAATATG+GGG + chr5_4:51310346-51310365 Msa0856540:intron 30.0%
ACAAGTGTCTTAAAATATGG+GGG + chr5_4:51310347-51310366 Msa0856540:intron 30.0%
TGGGGGAAATCAATATTAAA+TGG + chr5_4:51310364-51310383 Msa0856540:intron 30.0%
! TTTTGTGAAACCAATAGTGA+CGG + chr5_4:51310912-51310931 Msa0856540:CDS 30.0%
CAATCTCCATCATCATTAAT+TGG - chr5_4:51310991-51311010 None:intergenic 30.0%
AAGAGAGTCAAATTCACAAA+TGG - chr5_4:51311199-51311218 None:intergenic 30.0%
! TTTTGTCCACAGACAAACAA+AGG - chr5_4:51309557-51309576 None:intergenic 35.0%
AAGGCTTGTATACAGAAGTA+TGG + chr5_4:51309653-51309672 Msa0856540:CDS 35.0%
! TGTATACAGAAGTATGGTGA+AGG + chr5_4:51309659-51309678 Msa0856540:CDS 35.0%
! AGAAGTATGGTGAAGGAAAA+TGG + chr5_4:51309666-51309685 Msa0856540:CDS 35.0%
CATTATATACCTGCTCTTTG+TGG - chr5_4:51309701-51309720 None:intergenic 35.0%
TGTACTTGGCAGGATTAAAT+AGG + chr5_4:51309803-51309822 Msa0856540:intron 35.0%
ATTAAATGACAACTTGGCCT+TGG - chr5_4:51309960-51309979 None:intergenic 35.0%
!!! GAGCTTGTTTTGTAATCTGA+AGG + chr5_4:51310088-51310107 Msa0856540:intron 35.0%
!!! GTGTCTTTTTTTCCCGAAAA+AGG + chr5_4:51310214-51310233 Msa0856540:intron 35.0%
CACACATTTGAGAAAGAAGA+TGG + chr5_4:51310762-51310781 Msa0856540:CDS 35.0%
TGAGTTTGCATGCTTTCTTT+AGG - chr5_4:51310823-51310842 None:intergenic 35.0%
GAATGAGATGAAAAAGTTCG+AGG - chr5_4:51310865-51310884 None:intergenic 35.0%
!! CTTTTTCATCTCATTCACCA+TGG + chr5_4:51310869-51310888 Msa0856540:CDS 35.0%
TTTGTTGAAACCGTCACTAT+TGG - chr5_4:51310925-51310944 None:intergenic 35.0%
AACGTGAGCAATGACAAAAT+TGG + chr5_4:51311072-51311091 Msa0856540:CDS 35.0%
ATGCTCTTTACTATTACCAG+AGG + chr5_4:51311098-51311117 Msa0856540:CDS 35.0%
GTTGAGAACTTTCTTACTGA+AGG + chr5_4:51311138-51311157 Msa0856540:CDS 35.0%
! TTTTGTCCACAGACAAACAA+AGG - chr5_4:51309557-51309576 None:intergenic 35.0%
AAGGCTTGTATACAGAAGTA+TGG + chr5_4:51309653-51309672 Msa0856540:CDS 35.0%
! TGTATACAGAAGTATGGTGA+AGG + chr5_4:51309659-51309678 Msa0856540:CDS 35.0%
! AGAAGTATGGTGAAGGAAAA+TGG + chr5_4:51309666-51309685 Msa0856540:CDS 35.0%
CATTATATACCTGCTCTTTG+TGG - chr5_4:51309701-51309720 None:intergenic 35.0%
TGTACTTGGCAGGATTAAAT+AGG + chr5_4:51309803-51309822 Msa0856540:intron 35.0%
ATTAAATGACAACTTGGCCT+TGG - chr5_4:51309960-51309979 None:intergenic 35.0%
!!! GAGCTTGTTTTGTAATCTGA+AGG + chr5_4:51310088-51310107 Msa0856540:intron 35.0%
!!! GTGTCTTTTTTTCCCGAAAA+AGG + chr5_4:51310214-51310233 Msa0856540:intron 35.0%
CACACATTTGAGAAAGAAGA+TGG + chr5_4:51310762-51310781 Msa0856540:CDS 35.0%
TGAGTTTGCATGCTTTCTTT+AGG - chr5_4:51310823-51310842 None:intergenic 35.0%
GAATGAGATGAAAAAGTTCG+AGG - chr5_4:51310865-51310884 None:intergenic 35.0%
!! CTTTTTCATCTCATTCACCA+TGG + chr5_4:51310869-51310888 Msa0856540:CDS 35.0%
TTTGTTGAAACCGTCACTAT+TGG - chr5_4:51310925-51310944 None:intergenic 35.0%
AACGTGAGCAATGACAAAAT+TGG + chr5_4:51311072-51311091 Msa0856540:CDS 35.0%
ATGCTCTTTACTATTACCAG+AGG + chr5_4:51311098-51311117 Msa0856540:CDS 35.0%
GTTGAGAACTTTCTTACTGA+AGG + chr5_4:51311138-51311157 Msa0856540:CDS 35.0%
TGGACAAAAGCAAGTGCATA+TGG + chr5_4:51309568-51309587 Msa0856540:CDS 40.0%
ATGGAGAAGAGTAAGACTAG+AGG + chr5_4:51309587-51309606 Msa0856540:CDS 40.0%
! AAGACTAGAGGTGTGAGAAA+AGG + chr5_4:51309599-51309618 Msa0856540:CDS 40.0%
! AAAAGGTGCATGGACATATG+AGG + chr5_4:51309616-51309635 Msa0856540:CDS 40.0%
! CATTTAGTTCCACAAAGAGC+AGG + chr5_4:51309689-51309708 Msa0856540:CDS 40.0%
! ACTTGTTACATGTACTTGGC+AGG + chr5_4:51309793-51309812 Msa0856540:intron 40.0%
! ACCTCAATCTACAGCTTTTC+CGG - chr5_4:51309831-51309850 None:intergenic 40.0%
AGCATACATACCTGTTTCCT+AGG - chr5_4:51309936-51309955 None:intergenic 40.0%
ATTGATTGCTGCAAGACTTC+CGG + chr5_4:51310705-51310724 Msa0856540:CDS 40.0%
ACATCATTAGCTGTTCTACC+CGG - chr5_4:51310727-51310746 None:intergenic 40.0%
GATGAAAAAGTTCGAGGTTG+AGG - chr5_4:51310859-51310878 None:intergenic 40.0%
GTGACGGTTTCAACAAATGA+TGG + chr5_4:51310928-51310947 Msa0856540:CDS 40.0%
ATTCAACACTGTCTTCCATG+TGG + chr5_4:51311034-51311053 Msa0856540:CDS 40.0%
TGGACAAAAGCAAGTGCATA+TGG + chr5_4:51309568-51309587 Msa0856540:CDS 40.0%
ATGGAGAAGAGTAAGACTAG+AGG + chr5_4:51309587-51309606 Msa0856540:CDS 40.0%
! AAGACTAGAGGTGTGAGAAA+AGG + chr5_4:51309599-51309618 Msa0856540:CDS 40.0%
! AAAAGGTGCATGGACATATG+AGG + chr5_4:51309616-51309635 Msa0856540:CDS 40.0%
! CATTTAGTTCCACAAAGAGC+AGG + chr5_4:51309689-51309708 Msa0856540:CDS 40.0%
! ACTTGTTACATGTACTTGGC+AGG + chr5_4:51309793-51309812 Msa0856540:intron 40.0%
! ACCTCAATCTACAGCTTTTC+CGG - chr5_4:51309831-51309850 None:intergenic 40.0%
AGCATACATACCTGTTTCCT+AGG - chr5_4:51309936-51309955 None:intergenic 40.0%
ATTGATTGCTGCAAGACTTC+CGG + chr5_4:51310705-51310724 Msa0856540:CDS 40.0%
ACATCATTAGCTGTTCTACC+CGG - chr5_4:51310727-51310746 None:intergenic 40.0%
GATGAAAAAGTTCGAGGTTG+AGG - chr5_4:51310859-51310878 None:intergenic 40.0%
GTGACGGTTTCAACAAATGA+TGG + chr5_4:51310928-51310947 Msa0856540:CDS 40.0%
ATTCAACACTGTCTTCCATG+TGG + chr5_4:51311034-51311053 Msa0856540:CDS 40.0%
TGAGGAAGACAAGCTACTCA+AGG + chr5_4:51309634-51309653 Msa0856540:CDS 45.0%
TGGCAGGATTAAATAGGTGC+CGG + chr5_4:51309809-51309828 Msa0856540:intron 45.0%
GGAAAAGCTGTAGATTGAGG+TGG + chr5_4:51309830-51309849 Msa0856540:CDS 45.0%
CTAAGGTTACACAAGCTCCT+AGG + chr5_4:51309916-51309935 Msa0856540:CDS 45.0%
TACACAAGCTCCTAGGAAAC+AGG + chr5_4:51309923-51309942 Msa0856540:CDS 45.0%
AACAGGTATGTATGCTGCCA+AGG + chr5_4:51309940-51309959 Msa0856540:intron 45.0%
TTGATTGCTGCAAGACTTCC+GGG + chr5_4:51310706-51310725 Msa0856540:CDS 45.0%
AACACTGTCTTCCATGTGGT+GGG + chr5_4:51311038-51311057 Msa0856540:CDS 45.0%
AAGCAATCACCGACAGTACT+GGG - chr5_4:51311165-51311184 None:intergenic 45.0%
TACTGTCGGTGATTGCTTCT+GGG + chr5_4:51311167-51311186 Msa0856540:CDS 45.0%
TGAGGAAGACAAGCTACTCA+AGG + chr5_4:51309634-51309653 Msa0856540:CDS 45.0%
TGGCAGGATTAAATAGGTGC+CGG + chr5_4:51309809-51309828 Msa0856540:intron 45.0%
GGAAAAGCTGTAGATTGAGG+TGG + chr5_4:51309830-51309849 Msa0856540:CDS 45.0%
CTAAGGTTACACAAGCTCCT+AGG + chr5_4:51309916-51309935 Msa0856540:CDS 45.0%
TACACAAGCTCCTAGGAAAC+AGG + chr5_4:51309923-51309942 Msa0856540:CDS 45.0%
AACAGGTATGTATGCTGCCA+AGG + chr5_4:51309940-51309959 Msa0856540:intron 45.0%
TTGATTGCTGCAAGACTTCC+GGG + chr5_4:51310706-51310725 Msa0856540:CDS 45.0%
AACACTGTCTTCCATGTGGT+GGG + chr5_4:51311038-51311057 Msa0856540:CDS 45.0%
AAGCAATCACCGACAGTACT+GGG - chr5_4:51311165-51311184 None:intergenic 45.0%
TACTGTCGGTGATTGCTTCT+GGG + chr5_4:51311167-51311186 Msa0856540:CDS 45.0%
!!! TATTTTTATATTTTTATAGA+TGG + chr5_4:51310680-51310699 Msa0856540:intron 5.0%
!!! TATTTTTATATTTTTATAGA+TGG + chr5_4:51310680-51310699 Msa0856540:intron 5.0%
! GAGGTGTGAGAAAAGGTGCA+TGG + chr5_4:51309606-51309625 Msa0856540:CDS 50.0%
GCCGGAAAAGCTGTAGATTG+AGG + chr5_4:51309827-51309846 Msa0856540:CDS 50.0%
CAACACTGTCTTCCATGTGG+TGG + chr5_4:51311037-51311056 Msa0856540:CDS 50.0%
CAACAAACTCTCCCACCACA+TGG - chr5_4:51311052-51311071 None:intergenic 50.0%
ACTGAAGGACCCAGTACTGT+CGG + chr5_4:51311153-51311172 Msa0856540:CDS 50.0%
GAAGCAATCACCGACAGTAC+TGG - chr5_4:51311166-51311185 None:intergenic 50.0%
GTACTGTCGGTGATTGCTTC+TGG + chr5_4:51311166-51311185 Msa0856540:CDS 50.0%
! GAGGTGTGAGAAAAGGTGCA+TGG + chr5_4:51309606-51309625 Msa0856540:CDS 50.0%
GCCGGAAAAGCTGTAGATTG+AGG + chr5_4:51309827-51309846 Msa0856540:CDS 50.0%
CAACACTGTCTTCCATGTGG+TGG + chr5_4:51311037-51311056 Msa0856540:CDS 50.0%
CAACAAACTCTCCCACCACA+TGG - chr5_4:51311052-51311071 None:intergenic 50.0%
ACTGAAGGACCCAGTACTGT+CGG + chr5_4:51311153-51311172 Msa0856540:CDS 50.0%
GAAGCAATCACCGACAGTAC+TGG - chr5_4:51311166-51311185 None:intergenic 50.0%
GTACTGTCGGTGATTGCTTC+TGG + chr5_4:51311166-51311185 Msa0856540:CDS 50.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 51309551 51311239 51309551 ID=Msa0856540;Name=Msa0856540
chr5_4 mRNA 51309551 51311239 51309551 ID=Msa0856540-mRNA-1;Parent=Msa0856540;Name=Msa0856540-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|0|0|1|1|1|3|0|276
chr5_4 exon 51309551 51309710 51309551 ID=Msa0856540-mRNA-1:exon:16004;Parent=Msa0856540-mRNA-1
chr5_4 exon 51309815 51309944 51309815 ID=Msa0856540-mRNA-1:exon:16005;Parent=Msa0856540-mRNA-1
chr5_4 exon 51310699 51311239 51310699 ID=Msa0856540-mRNA-1:exon:16006;Parent=Msa0856540-mRNA-1
chr5_4 CDS 51309551 51309710 51309551 ID=Msa0856540-mRNA-1:cds;Parent=Msa0856540-mRNA-1
chr5_4 CDS 51309815 51309944 51309815 ID=Msa0856540-mRNA-1:cds;Parent=Msa0856540-mRNA-1
chr5_4 CDS 51310699 51311239 51310699 ID=Msa0856540-mRNA-1:cds;Parent=Msa0856540-mRNA-1
Gene Sequence

>Msa0856540

ATGCCTTTGTTTGTCTGTGGACAAAAGCAAGTGCATATGGAGAAGAGTAAGACTAGAGGTGTGAGAAAAGGTGCATGGACATATGAGGAAGACAAGCTACTCAAGGCTTGTATACAGAAGTATGGTGAAGGAAAATGGCATTTAGTTCCACAAAGAGCAGGATTAAATAGGTGCCGGAAAAGCTGTAGATTGAGGTGGTTAAATTATTTAAATCCCACCATCAATAGAGAAAGTTTTTCTGAGGATGAAGTTGATATGATTCTAAGGTTACACAAGCTCCTAGGAAACAGATGGTCATTGATTGCTGCAAGACTTCCGGGTAGAACAGCTAATGATGTGAAGAATTATTGGCACACACATTTGAGAAAGAAGATGGTTTCAAGAAAAGAAGAAAAGAAAGAAAATGAGAAACCTAAAGAAAGCATGCAAACTCATGAAGTGATTAAACCTCAACCTCGAACTTTTTCATCTCATTCACCATGGTTAAATGAGAAATATAATAATTTTGTGAAACCAATAGTGACGGTTTCAACAAATGATGGTACTGTTGCAAAAGATAGTGAAGTAGATACTATTCTACCAATTAATGATGATGGAGATTGTGCTGCACAACCATATCTTGAAAATTCAACACTGTCTTCCATGTGGTGGGAGAGTTTGTTGAACGTGAGCAATGACAAAATTGGATCATGCTCTTTACTATTACCAGAGGAATATTCCAAATTAAATGTTGAGAACTTTCTTACTGAAGGACCCAGTACTGTCGGTGATTGCTTCTGGGATTCTACCATTTGTGAATTTGACTCTCTTTTAGATGATATCTTAAATTAG
Protein sequence

>Msa0856540

MPLFVCGQKQVHMEKSKTRGVRKGAWTYEEDKLLKACIQKYGEGKWHLVPQRAGLNRCRKSCRLRWLNYLNPTINRESFSEDEVDMILRLHKLLGNRWSLIAARLPGRTANDVKNYWHTHLRKKMVSRKEEKKENEKPKESMQTHEVIKPQPRTFSSHSPWLNEKYNNFVKPIVTVSTNDGTVAKDSEVDTILPINDDGDCAAQPYLENSTLSSMWWESLLNVSNDKIGSCSLLLPEEYSKLNVENFLTEGPSTVGDCFWDSTICEFDSLLDDILN*