Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0737360 | GAU32484.1 | 90.535 | 243 | 4 | 1 | 18 | 241 | 3394 | 3636 | 3.04e-139 | 443 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0737360 | sp|Q8GY23|UPL1_ARATH | 68.679 | 265 | 42 | 2 | 18 | 241 | 3415 | 3679 | 8.72e-113 | 359 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0737360 | A0A2Z6MIR7 | 90.535 | 243 | 4 | 1 | 18 | 241 | 3394 | 3636 | 1.45e-139 | 443 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0563840 | Msa0737360 | 0.800081 | 1.703608e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0737360 | MtrunA17_Chr3g0132611 | 83.019 | 265 | 4 | 2 | 18 | 241 | 3395 | 3659 | 1.02e-138 | 430 |
| Msa0737360 | MtrunA17_Chr5g0427791 | 80.377 | 265 | 11 | 2 | 18 | 241 | 3389 | 3653 | 2.96e-134 | 417 |
| Msa0737360 | MtrunA17_Chr4g0052551 | 69.057 | 265 | 41 | 2 | 18 | 241 | 3471 | 3735 | 4.37e-115 | 362 |
| Msa0737360 | MtrunA17_Chr4g0052561 | 68.679 | 265 | 42 | 2 | 18 | 241 | 3492 | 3756 | 1.18e-114 | 361 |
| Msa0737360 | MtrunA17_Chr2g0293841 | 38.889 | 270 | 111 | 8 | 18 | 242 | 763 | 1023 | 1.85e-42 | 154 |
| Msa0737360 | MtrunA17_Chr7g0265431 | 34.066 | 273 | 126 | 8 | 18 | 242 | 881 | 1147 | 1.08e-32 | 125 |
| Msa0737360 | MtrunA17_Chr2g0289951 | 31.553 | 206 | 116 | 5 | 48 | 235 | 95 | 293 | 9.49e-25 | 99.8 |
| Msa0737360 | MtrunA17_Chr4g0075761 | 32.273 | 220 | 120 | 6 | 38 | 235 | 660 | 872 | 9.83e-25 | 102 |
| Msa0737360 | MtrunA17_Chr1g0181721 | 29.279 | 222 | 120 | 4 | 18 | 202 | 1270 | 1491 | 9.05e-20 | 88.6 |
| Msa0737360 | MtrunA17_Chr2g0289901 | 28.807 | 243 | 115 | 7 | 38 | 229 | 83 | 318 | 1.03e-18 | 84.0 |
| Msa0737360 | MtrunA17_Chr2g0289931 | 35.115 | 131 | 74 | 3 | 48 | 174 | 59 | 182 | 4.49e-17 | 77.4 |
| Msa0737360 | MtrunA17_Chr2g0289881 | 34.351 | 131 | 75 | 4 | 48 | 174 | 98 | 221 | 3.10e-16 | 75.9 |
| Msa0737360 | MtrunA17_Chr7g0263651 | 29.444 | 180 | 98 | 5 | 90 | 240 | 3 | 182 | 1.44e-15 | 72.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0737360 | AT1G55860.1 | 68.679 | 265 | 42 | 2 | 18 | 241 | 3415 | 3679 | 8.86e-114 | 359 |
| Msa0737360 | AT1G70320.1 | 67.925 | 265 | 44 | 2 | 18 | 241 | 3392 | 3656 | 1.88e-113 | 358 |
| Msa0737360 | AT3G17205.2 | 39.630 | 270 | 109 | 9 | 18 | 242 | 754 | 1014 | 8.23e-42 | 152 |
| Msa0737360 | AT3G17205.1 | 39.630 | 270 | 109 | 9 | 18 | 242 | 768 | 1028 | 9.19e-42 | 152 |
| Msa0737360 | AT3G17205.3 | 39.630 | 270 | 109 | 9 | 18 | 242 | 768 | 1028 | 9.19e-42 | 152 |
| Msa0737360 | AT3G53090.1 | 36.059 | 269 | 128 | 7 | 18 | 243 | 875 | 1142 | 4.14e-37 | 139 |
| Msa0737360 | AT3G53090.2 | 36.059 | 269 | 128 | 7 | 18 | 243 | 875 | 1142 | 4.14e-37 | 139 |
| Msa0737360 | AT5G02880.1 | 26.523 | 279 | 151 | 5 | 18 | 242 | 1223 | 1501 | 2.73e-25 | 105 |
| Msa0737360 | AT4G12570.1 | 31.604 | 212 | 117 | 7 | 51 | 241 | 667 | 871 | 6.68e-22 | 95.1 |
| Msa0737360 | AT5G02880.2 | 26.126 | 222 | 127 | 3 | 18 | 202 | 1223 | 1444 | 4.65e-21 | 92.8 |
| Msa0737360 | AT4G38600.3 | 24.221 | 289 | 155 | 7 | 18 | 242 | 1599 | 1887 | 7.43e-14 | 71.6 |
| Msa0737360 | AT4G38600.1 | 24.221 | 289 | 155 | 7 | 18 | 242 | 1599 | 1887 | 7.43e-14 | 71.6 |
Find 55 sgRNAs with CRISPR-Local
Find 290 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCCCGGTGATTCAATGGTTT+TGG | 0.141517 | 5_1:-54604137 | Msa0737360:CDS |
| ACCTCAAATAAATGCTTTCT+TGG | 0.242468 | 5_1:-54604477 | Msa0737360:CDS |
| TCTTCCAAATGTTGTTTAGA+TGG | 0.271330 | 5_1:+54603370 | None:intergenic |
| CATGAAGCAAATGAGGGATT+TGG | 0.287413 | 5_1:-54603328 | Msa0737360:CDS |
| CTGAAATTTAGTTTCTGAAA+TGG | 0.302011 | 5_1:-54606204 | Msa0737360:intron |
| TCATTCTATAAGCACATTCT+AGG | 0.304821 | 5_1:-54604989 | Msa0737360:CDS |
| TAAGCATCAATATGTTGATT+TGG | 0.313697 | 5_1:-54604531 | Msa0737360:CDS |
| TATAGAATGATCGAGTAAAA+TGG | 0.315737 | 5_1:+54605002 | None:intergenic |
| AGAGCAAATACAGAATATTC+TGG | 0.327907 | 5_1:-54604174 | Msa0737360:CDS |
| AACAAACTTACAATCAATAT+CGG | 0.331367 | 5_1:+54604373 | None:intergenic |
| TTTCAATCAATTAGATTTGC+CGG | 0.333489 | 5_1:-54603398 | Msa0737360:CDS |
| CTGCTTCCCCGGTGATTCAA+TGG | 0.371026 | 5_1:-54604143 | Msa0737360:CDS |
| GAATGATATCAGTGATGTTC+TGG | 0.379619 | 5_1:-54604790 | Msa0737360:CDS |
| GTTGGAAAAGCATTATTTGA+TGG | 0.392131 | 5_1:-54605040 | Msa0737360:CDS |
| CAAATAAATGCTTTCTTGGA+AGG | 0.404199 | 5_1:-54604473 | Msa0737360:CDS |
| ACTGATTATGAGTTGATTCC+CGG | 0.416823 | 5_1:-54604584 | Msa0737360:CDS |
| TCCAAGAAAGCATTTATTTG+AGG | 0.420992 | 5_1:+54604476 | None:intergenic |
| TTTCTTACTGTTTAGGTCCA+GGG | 0.428559 | 5_1:-54607844 | None:intergenic |
| GTATCCATCTAAACAACATT+TGG | 0.432935 | 5_1:-54603374 | Msa0737360:CDS |
| AATGCTTTCTTGGAAGGGTT+CGG | 0.435126 | 5_1:-54604467 | Msa0737360:CDS |
| TATATTCAATGACAAAGAAC+TGG | 0.439692 | 5_1:-54604417 | Msa0737360:CDS |
| ATTATTTGATGGTCAGCTCT+TGG | 0.445219 | 5_1:-54605029 | Msa0737360:CDS |
| TGAAATTTAGTTTCTGAAAT+GGG | 0.452788 | 5_1:-54606203 | Msa0737360:intron |
| AGGCTGTTGCAGTTTGTGAC+AGG | 0.452963 | 5_1:-54604078 | Msa0737360:CDS |
| AATATAGATATCAACTCCTT+CGG | 0.481461 | 5_1:+54604434 | None:intergenic |
| TGGATATAGTGCTGCTTCCC+CGG | 0.486416 | 5_1:-54604154 | Msa0737360:CDS |
| TCCCAAAACCATTGAATCAC+CGG | 0.489543 | 5_1:+54604135 | None:intergenic |
| AACTTTAGTATTCCGTCCAC+CGG | 0.490687 | 5_1:+54604565 | None:intergenic |
| AAATAAATGCTTTCTTGGAA+GGG | 0.491087 | 5_1:-54604472 | Msa0737360:CDS |
| TTGATGAATTCTTCTAACAT+TGG | 0.491920 | 5_1:-54607818 | Msa0737360:CDS |
| TTCTTACTGTTTAGGTCCAG+GGG | 0.492301 | 5_1:-54607843 | None:intergenic |
| AGCAAATGAGGGATTTGGAT+TGG | 0.497119 | 5_1:-54603323 | Msa0737360:CDS |
| CCCAAAACCATTGAATCACC+GGG | 0.499802 | 5_1:+54604136 | None:intergenic |
| TGCGATTCATGAAGCAAATG+AGG | 0.510842 | 5_1:-54603335 | Msa0737360:CDS |
| ATGTTTCAGGTGCCTCTAGA+GGG | 0.525479 | 5_1:-54603647 | Msa0737360:intron |
| AATGTTTCAGGTGCCTCTAG+AGG | 0.525907 | 5_1:-54603648 | Msa0737360:intron |
| ACAAACTTACAATCAATATC+GGG | 0.528402 | 5_1:+54604374 | None:intergenic |
| GAAGAATTCATCAATTCCCC+TGG | 0.529786 | 5_1:+54607827 | None:intergenic |
| CTAAACAACATTTGGAAGAG+AGG | 0.548837 | 5_1:-54603366 | Msa0737360:CDS |
| ATGAGTTGATTCCCGGTGGA+CGG | 0.550628 | 5_1:-54604577 | Msa0737360:CDS |
| AGGTTTCAGCAAAGAGGACA+AGG | 0.551546 | 5_1:-54604103 | Msa0737360:CDS |
| TGAAATGGGATGAAAGTCCA+AGG | 0.572775 | 5_1:-54606189 | Msa0737360:CDS |
| TGTTGTTTAGATGGATACTC+CGG | 0.574334 | 5_1:+54603379 | None:intergenic |
| TGTTCAAGGTTTCAGCAAAG+AGG | 0.581537 | 5_1:-54604109 | Msa0737360:CDS |
| GTTTGTGACAGGCACTTCCA+AGG | 0.591526 | 5_1:-54604067 | Msa0737360:intron |
| ACTTTAGTATTCCGTCCACC+GGG | 0.596825 | 5_1:+54604566 | None:intergenic |
| GCGATTCATGAAGCAAATGA+GGG | 0.601962 | 5_1:-54603334 | Msa0737360:CDS |
| TCAGCAAAGAGGACAAGGCT+AGG | 0.611890 | 5_1:-54604098 | Msa0737360:CDS |
| GAACTGGAACTATTGATCAG+TGG | 0.637735 | 5_1:-54604401 | Msa0737360:CDS |
| GTTCGGTGAAATAATTCCGA+AGG | 0.644631 | 5_1:-54604450 | Msa0737360:CDS |
| GATTATGAGTTGATTCCCGG+TGG | 0.660118 | 5_1:-54604581 | Msa0737360:CDS |
| GAAATGGGATGAAAGTCCAA+GGG | 0.662434 | 5_1:-54606188 | Msa0737360:intron |
| AGTGCGCTAAAACCCTCTAG+AGG | 0.690121 | 5_1:+54603635 | None:intergenic |
| ACGGAATACTAAAGTTACAG+AGG | 0.721312 | 5_1:-54604558 | Msa0737360:CDS |
| CCAAAACCATTGAATCACCG+GGG | 0.753804 | 5_1:+54604137 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTATTTTTAGATATGTT+GGG | + | chr5_1:54605685-54605704 | None:intergenic | 10.0% |
| !!! | TTTTTTATTTTTAGATATGT+TGG | + | chr5_1:54605686-54605705 | None:intergenic | 10.0% |
| !!! | TATGTATTTTATTTATTGTT+TGG | - | chr5_1:54607273-54607292 | Msa0737360:intron | 10.0% |
| !!! | TTTTGAAAGAATTATATATA+TGG | - | chr5_1:54607336-54607355 | Msa0737360:intron | 10.0% |
| !! | TTTGAAAGAATTATATATAT+GGG | - | chr5_1:54607337-54607356 | Msa0737360:intron | 10.0% |
| !! | AAAAAAAATAAAATTGAATG+GGG | + | chr5_1:54607402-54607421 | None:intergenic | 10.0% |
| !!! | AATTCTGTATTTTTGAATTT+TGG | - | chr5_1:54602836-54602855 | Msa0737360:intron | 15.0% |
| !!! | ATTCTGTATTTTTGAATTTT+GGG | - | chr5_1:54602837-54602856 | Msa0737360:intron | 15.0% |
| !!! | TGAAATTTTTTTCAATTTCT+TGG | + | chr5_1:54602879-54602898 | None:intergenic | 15.0% |
| !! | ACTAAAATTACAAATACATA+TGG | + | chr5_1:54602985-54603004 | None:intergenic | 15.0% |
| !!! | ATCATTTAAAATTCTGATTA+GGG | + | chr5_1:54603204-54603223 | None:intergenic | 15.0% |
| !! | CTTATTTCAAAAATTTGAAA+TGG | - | chr5_1:54605622-54605641 | Msa0737360:intron | 15.0% |
| !!! | TAAACATTTTGATCTTTTAT+TGG | - | chr5_1:54606522-54606541 | Msa0737360:intron | 15.0% |
| !!! | ATAGAAAATCACTAAATTTT+GGG | + | chr5_1:54606554-54606573 | None:intergenic | 15.0% |
| !!! | ATATTGGAAATACTTTTATT+TGG | - | chr5_1:54606592-54606611 | Msa0737360:intron | 15.0% |
| !! | TTTAAAAGATTGAATAATGT+TGG | - | chr5_1:54606796-54606815 | Msa0737360:intron | 15.0% |
| !!! | TTTTATTTATTGTTTGGATT+TGG | - | chr5_1:54607279-54607298 | Msa0737360:intron | 15.0% |
| !!! | TCATTTAAAATTCTGATTAG+GGG | + | chr5_1:54603203-54603222 | None:intergenic | 20.0% |
| !!! | CATCATTTAAAATTCTGATT+AGG | + | chr5_1:54603205-54603224 | None:intergenic | 20.0% |
| !! | TGCAATAACTATAATTTGAA+TGG | + | chr5_1:54603310-54603329 | None:intergenic | 20.0% |
| !! | AAGTAGTTGATTAAGAATTA+AGG | + | chr5_1:54603566-54603585 | None:intergenic | 20.0% |
| !!! | TGTTTTTCTATTTAAGTTGT+TGG | - | chr5_1:54603656-54603675 | Msa0737360:intron | 20.0% |
| !! | TTTGTCTAAGTTTAACAAAA+AGG | + | chr5_1:54604071-54604090 | None:intergenic | 20.0% |
| !!! | TTTTTGTTAAACTTAGACAA+AGG | - | chr5_1:54604070-54604089 | Msa0737360:CDS | 20.0% |
| !! | TAGTTAACCATTTATGTATT+TGG | - | chr5_1:54604149-54604168 | Msa0737360:CDS | 20.0% |
| !! | AGTTAACCATTTATGTATTT+GGG | - | chr5_1:54604150-54604169 | Msa0737360:CDS | 20.0% |
| !!! | TGAAATTTAGTTTCTGAAAT+GGG | - | chr5_1:54604344-54604363 | Msa0737360:intron | 20.0% |
| !! | GAATTAAAAATACTTGACAT+AGG | + | chr5_1:54605019-54605038 | None:intergenic | 20.0% |
| !!! | ACAATCAATTTGTTAATCAA+CGG | + | chr5_1:54605091-54605110 | None:intergenic | 20.0% |
| !! | CACACAAAAATAACAAAATT+AGG | + | chr5_1:54605280-54605299 | None:intergenic | 20.0% |
| !!! | CTATCTTATTTCAAATTTGT+TGG | - | chr5_1:54605401-54605420 | Msa0737360:intron | 20.0% |
| !! | AATATCATGATATGTAACTT+TGG | + | chr5_1:54605586-54605605 | None:intergenic | 20.0% |
| !!! | TTCAAATTTTTGAAATAAGC+CGG | + | chr5_1:54605621-54605640 | None:intergenic | 20.0% |
| !!! | TACTAACATTTTCTTGTATT+TGG | - | chr5_1:54605724-54605743 | Msa0737360:intron | 20.0% |
| !! | TAATCTGAATGAATATGTTT+AGG | - | chr5_1:54605938-54605957 | Msa0737360:intron | 20.0% |
| !! | AACAAACTTACAATCAATAT+CGG | + | chr5_1:54606177-54606196 | None:intergenic | 20.0% |
| !! | AAAGAAACTCAATAAAGATT+AGG | + | chr5_1:54606211-54606230 | None:intergenic | 20.0% |
| !!! | AGTGTTAAAATTTCTTTTCT+AGG | + | chr5_1:54606321-54606340 | None:intergenic | 20.0% |
| !!! | AGAAAAGAAATTTTAACACT+CGG | - | chr5_1:54606321-54606340 | Msa0737360:intron | 20.0% |
| !!! | CATAGAAAATCACTAAATTT+TGG | + | chr5_1:54606555-54606574 | None:intergenic | 20.0% |
| !!! | TAAAAGTATTTCCAATATGA+AGG | + | chr5_1:54606590-54606609 | None:intergenic | 20.0% |
| !!! | AAATACTTTTATTTGGAGTT+CGG | - | chr5_1:54606599-54606618 | Msa0737360:intron | 20.0% |
| !!! | TATTCTATCGACATAATTTT+TGG | - | chr5_1:54607046-54607065 | Msa0737360:intron | 20.0% |
| !!! | ATTCTATCGACATAATTTTT+GGG | - | chr5_1:54607047-54607066 | Msa0737360:intron | 20.0% |
| !!! | CGCTTTAGTTTAATTTAAAA+GGG | + | chr5_1:54607526-54607545 | None:intergenic | 20.0% |
| ! | TTGATGAATTCTTCTAACAT+TGG | - | chr5_1:54602729-54602748 | Msa0737360:intron | 25.0% |
| !!! | TTTTTTCAATTTCTTGGCAA+TGG | + | chr5_1:54602873-54602892 | None:intergenic | 25.0% |
| !!! | AGATAAGTTGATCCTTTAAT+TGG | - | chr5_1:54603015-54603034 | Msa0737360:intron | 25.0% |
| ! | AATTCTGAACAACCAATTAA+AGG | + | chr5_1:54603030-54603049 | None:intergenic | 25.0% |
| !!! | ACTGATTTCTTTTTTCTGAA+TGG | - | chr5_1:54603107-54603126 | Msa0737360:intron | 25.0% |
| !!! | GTTTTTTACTATGTTAGGAA+AGG | + | chr5_1:54603243-54603262 | None:intergenic | 25.0% |
| !!! | CTTCAGTTTTTTACTATGTT+AGG | + | chr5_1:54603248-54603267 | None:intergenic | 25.0% |
| ! | TTATAGTTATTGCATCTTAG+AGG | - | chr5_1:54603316-54603335 | Msa0737360:CDS | 25.0% |
| !! | TTTAGGAATGAACTGTATTT+TGG | - | chr5_1:54603517-54603536 | Msa0737360:intron | 25.0% |
| ! | TTGATTAAGAATTAAGGAAC+GGG | + | chr5_1:54603560-54603579 | None:intergenic | 25.0% |
| ! | GTTGATTAAGAATTAAGGAA+CGG | + | chr5_1:54603561-54603580 | None:intergenic | 25.0% |
| !!! | CAATTTTTTCCAAAGATCAA+TGG | + | chr5_1:54603612-54603631 | None:intergenic | 25.0% |
| ! | TGGAAAAAATTGTGAAGTTT+AGG | - | chr5_1:54603620-54603639 | Msa0737360:CDS | 25.0% |
| !! | AAATTGTGAAGTTTAGGATT+TGG | - | chr5_1:54603626-54603645 | Msa0737360:CDS | 25.0% |
| ! | GATAAACACTAAAAGAAACA+TGG | + | chr5_1:54603701-54603720 | None:intergenic | 25.0% |
| !! | TTTCTTTTAGTGTTTATCAG+TGG | - | chr5_1:54603703-54603722 | Msa0737360:intron | 25.0% |
| ! | GAATGCATATAGTTTGAAAA+TGG | - | chr5_1:54603758-54603777 | Msa0737360:intron | 25.0% |
| ! | TCTCTACAAACTTGTAAAAT+GGG | + | chr5_1:54603960-54603979 | None:intergenic | 25.0% |
| ! | GATGATTTGAAAGTAATTGA+AGG | - | chr5_1:54603982-54604001 | Msa0737360:intron | 25.0% |
| ! | ATTTGAAAGTAATTGAAGGA+AGG | - | chr5_1:54603986-54604005 | Msa0737360:intron | 25.0% |
| ! | AGTAATCCCAAATACATAAA+TGG | + | chr5_1:54604159-54604178 | None:intergenic | 25.0% |
| !! | GCATAATAGTTTAAGTTAGA+TGG | - | chr5_1:54604279-54604298 | Msa0737360:intron | 25.0% |
| !! | CTGAAATTTAGTTTCTGAAA+TGG | - | chr5_1:54604343-54604362 | Msa0737360:intron | 25.0% |
| ! | AAGATATAAAAGACTGAGTA+TGG | + | chr5_1:54604457-54604476 | None:intergenic | 25.0% |
| !! | ATACTCAGTCTTTTATATCT+TGG | - | chr5_1:54604456-54604475 | Msa0737360:CDS | 25.0% |
| ! | TTATATTGTGTCACATGATA+TGG | - | chr5_1:54604514-54604533 | Msa0737360:CDS | 25.0% |
| !!! | CATTCACAGATATTTTGATT+AGG | - | chr5_1:54604660-54604679 | Msa0737360:intron | 25.0% |
| ! | AAATGAACGTAAAACTATGA+GGG | + | chr5_1:54604753-54604772 | None:intergenic | 25.0% |
| ! | TAAATGAACGTAAAACTATG+AGG | + | chr5_1:54604754-54604773 | None:intergenic | 25.0% |
| ! | ATTATTAGATTTAGCTGGAT+GGG | - | chr5_1:54604847-54604866 | Msa0737360:intron | 25.0% |
| ! | AGAGAGTAAACATATTGTTA+TGG | - | chr5_1:54605064-54605083 | Msa0737360:intron | 25.0% |
| ! | TAAATTAACCTGTGAAGATT+GGG | + | chr5_1:54605200-54605219 | None:intergenic | 25.0% |
| ! | ATAAATTAACCTGTGAAGAT+TGG | + | chr5_1:54605201-54605220 | None:intergenic | 25.0% |
| ! | TTCCAAAATCAAAACACTAT+TGG | + | chr5_1:54605365-54605384 | None:intergenic | 25.0% |
| ! | ATGCAGCATACATTAAAAAA+AGG | + | chr5_1:54605449-54605468 | None:intergenic | 25.0% |
| ! | TATAGAATGATCGAGTAAAA+TGG | + | chr5_1:54605548-54605567 | None:intergenic | 25.0% |
| !!! | TTATTTTTAGATATGTTGGG+TGG | + | chr5_1:54605682-54605701 | None:intergenic | 25.0% |
| !! | TAAGCATCAATATGTTGATT+TGG | - | chr5_1:54606016-54606035 | Msa0737360:intron | 25.0% |
| ! | AAATAAATGCTTTCTTGGAA+GGG | - | chr5_1:54606075-54606094 | Msa0737360:intron | 25.0% |
| ! | AATATAGATATCAACTCCTT+CGG | + | chr5_1:54606116-54606135 | None:intergenic | 25.0% |
| ! | TATATTCAATGACAAAGAAC+TGG | - | chr5_1:54606130-54606149 | Msa0737360:intron | 25.0% |
| ! | ACAAACTTACAATCAATATC+GGG | + | chr5_1:54606176-54606195 | None:intergenic | 25.0% |
| !!! | GGTTATACATTTTATTTCAG+TGG | - | chr5_1:54606342-54606361 | Msa0737360:intron | 25.0% |
| ! | TGAGAAATTATCCTTCATAT+TGG | - | chr5_1:54606576-54606595 | Msa0737360:intron | 25.0% |
| ! | AAGAAAGTAAACAGAAAAAC+TGG | + | chr5_1:54606671-54606690 | None:intergenic | 25.0% |
| ! | AACATGTAATGTACGATTAA+TGG | - | chr5_1:54606859-54606878 | Msa0737360:intron | 25.0% |
| ! | ACATGTAATGTACGATTAAT+GGG | - | chr5_1:54606860-54606879 | Msa0737360:intron | 25.0% |
| !!! | ATAATTTTTGGGTCAAGTTT+TGG | - | chr5_1:54607058-54607077 | Msa0737360:intron | 25.0% |
| ! | TTTCAATCAATTAGATTTGC+CGG | - | chr5_1:54607149-54607168 | Msa0737360:intron | 25.0% |
| !! | GCGCTTTAGTTTAATTTAAA+AGG | + | chr5_1:54607527-54607546 | None:intergenic | 25.0% |
| ! | TAAAAATCTGTTAGGAAAAG+AGG | + | chr5_1:54607750-54607769 | None:intergenic | 25.0% |
| !! | TTTCCTAACAGATTTTTACT+TGG | - | chr5_1:54607752-54607771 | Msa0737360:intron | 25.0% |
| ! | AGATTAGTTGATCTGTGATA+TGG | - | chr5_1:54602912-54602931 | Msa0737360:intron | 30.0% |
| !! | ATGGTTTGATTTTGTTGCTA+TGG | - | chr5_1:54602931-54602950 | Msa0737360:intron | 30.0% |
| GAATGCAATTACAATGATTG+TGG | - | chr5_1:54603062-54603081 | Msa0737360:intron | 30.0% | |
| ! | TCTTAGAGGAAGTATACATT+TGG | - | chr5_1:54603330-54603349 | Msa0737360:CDS | 30.0% |
| ACAAAGAGAAAAAGGTTACT+GGG | + | chr5_1:54603423-54603442 | None:intergenic | 30.0% | |
| AACAAAGAGAAAAAGGTTAC+TGG | + | chr5_1:54603424-54603443 | None:intergenic | 30.0% | |
| ! | GTAACCTTTTTCTCTTTGTT+AGG | - | chr5_1:54603424-54603443 | Msa0737360:intron | 30.0% |
| AAGTCCTAACAAAGAGAAAA+AGG | + | chr5_1:54603431-54603450 | None:intergenic | 30.0% | |
| GTCTGTATGAATGAGAAATT+TGG | - | chr5_1:54603468-54603487 | Msa0737360:intron | 30.0% | |
| !! | TATTTTGGACCTAATGCAAT+TGG | - | chr5_1:54603532-54603551 | Msa0737360:intron | 30.0% |
| !! | TAAGTTGTTGGTTTACTGAT+AGG | - | chr5_1:54603668-54603687 | Msa0737360:intron | 30.0% |
| CATCTAAATCATCATCATTC+AGG | + | chr5_1:54603914-54603933 | None:intergenic | 30.0% | |
| TACAAACTTGTAAAATGGGA+GGG | + | chr5_1:54603956-54603975 | None:intergenic | 30.0% | |
| CTCTCTACAAACTTGTAAAA+TGG | + | chr5_1:54603961-54603980 | None:intergenic | 30.0% | |
| ! | ATAACGTTGATTGATCTACT+TGG | - | chr5_1:54604196-54604215 | Msa0737360:intron | 30.0% |
| CTTGCAATTGTTTCAATATC+CGG | - | chr5_1:54604424-54604443 | Msa0737360:CDS | 30.0% | |
| ! | TATCTTGGTATGTTAGTTTG+TGG | - | chr5_1:54604471-54604490 | Msa0737360:CDS | 30.0% |
| CCAAAAGCAACAAACAATTA+GGG | + | chr5_1:54604639-54604658 | None:intergenic | 30.0% | |
| ACCAAAAGCAACAAACAATT+AGG | + | chr5_1:54604640-54604659 | None:intergenic | 30.0% | |
| !!! | ACAGATATTTTGATTAGGCT+CGG | - | chr5_1:54604665-54604684 | Msa0737360:intron | 30.0% |
| AGGAAAACACATATTTCAGA+TGG | + | chr5_1:54604777-54604796 | None:intergenic | 30.0% | |
| GTCTGTTTAGGAAAACAAAT+AGG | + | chr5_1:54604797-54604816 | None:intergenic | 30.0% | |
| TCCAGCTAAATCTAATAATC+CGG | + | chr5_1:54604846-54604865 | None:intergenic | 30.0% | |
| GATTATTAGATTTAGCTGGA+TGG | - | chr5_1:54604846-54604865 | Msa0737360:intron | 30.0% | |
| !!! | CTCTTTTTTAAAGTCTACTC+TGG | - | chr5_1:54604960-54604979 | Msa0737360:intron | 30.0% |
| CTAAACTTGTATTAACCTCT+TGG | - | chr5_1:54604990-54605009 | Msa0737360:CDS | 30.0% | |
| ATGTTTACTCTCTAACATCT+GGG | + | chr5_1:54605057-54605076 | None:intergenic | 30.0% | |
| TATGTTTACTCTCTAACATC+TGG | + | chr5_1:54605058-54605077 | None:intergenic | 30.0% | |
| ACTCTATATATGCATTCTGA+TGG | + | chr5_1:54605337-54605356 | None:intergenic | 30.0% | |
| !!! | AGCCAATAGTGTTTTGATTT+TGG | - | chr5_1:54605360-54605379 | Msa0737360:intron | 30.0% |
| !! | GTTGGAAAAGCATTATTTGA+TGG | - | chr5_1:54605507-54605526 | Msa0737360:intron | 30.0% |
| TCATTCTATAAGCACATTCT+AGG | - | chr5_1:54605558-54605577 | Msa0737360:intron | 30.0% | |
| TGATATTGAAGCTATTGATC+CGG | - | chr5_1:54605599-54605618 | Msa0737360:intron | 30.0% | |
| TTGAGATGATATTGATGCAT+TGG | - | chr5_1:54605895-54605914 | Msa0737360:intron | 30.0% | |
| AGATTAGACAGTTAACAATG+AGG | + | chr5_1:54605924-54605943 | None:intergenic | 30.0% | |
| ACCTCAAATAAATGCTTTCT+TGG | - | chr5_1:54606070-54606089 | Msa0737360:intron | 30.0% | |
| !! | TCCAAGAAAGCATTTATTTG+AGG | + | chr5_1:54606074-54606093 | None:intergenic | 30.0% |
| CAAATAAATGCTTTCTTGGA+AGG | - | chr5_1:54606074-54606093 | Msa0737360:intron | 30.0% | |
| GAATAGAATGACATCAACAA+AGG | + | chr5_1:54606254-54606273 | None:intergenic | 30.0% | |
| AGAGCAAATACAGAATATTC+TGG | - | chr5_1:54606373-54606392 | Msa0737360:intron | 30.0% | |
| TCTGTTTACTTTCTTCCAAA+TGG | - | chr5_1:54606676-54606695 | Msa0737360:intron | 30.0% | |
| ! | ATTTTTGCTTCCAATGTTTC+AGG | - | chr5_1:54606887-54606906 | Msa0737360:intron | 30.0% |
| GCAAAAGTTTCAAATACACA+AGG | - | chr5_1:54606953-54606972 | Msa0737360:intron | 30.0% | |
| TTTCAAATACACAAGGCATA+TGG | - | chr5_1:54606960-54606979 | Msa0737360:intron | 30.0% | |
| GTATCCATCTAAACAACATT+TGG | - | chr5_1:54607173-54607192 | Msa0737360:intron | 30.0% | |
| ! | TCTTCCAAATGTTGTTTAGA+TGG | + | chr5_1:54607180-54607199 | None:intergenic | 30.0% |
| AAATTAACATTTGCGACTGT+TGG | - | chr5_1:54607430-54607449 | Msa0737360:intron | 30.0% | |
| !! | GCATTTTGCGACTTTTAAAA+TGG | + | chr5_1:54607708-54607727 | None:intergenic | 30.0% |
| AGACCAAGTAAAAATCTGTT+AGG | + | chr5_1:54607758-54607777 | None:intergenic | 30.0% | |
| ! | GCAACATTTTGTGATGAAAT+AGG | - | chr5_1:54607824-54607843 | Msa0737360:exon | 30.0% |
| !! | GTGTTCTTATGCTGATTCTT+TGG | - | chr5_1:54602799-54602818 | Msa0737360:intron | 35.0% |
| !!! | ATGTGCAGTTTTAAACCTCA+TGG | - | chr5_1:54603375-54603394 | Msa0737360:CDS | 35.0% |
| AGTGTCAAATTGAAACCATG+AGG | + | chr5_1:54603393-54603412 | None:intergenic | 35.0% | |
| TCTAGCATTAACAAGCAAAG+AGG | + | chr5_1:54603870-54603889 | None:intergenic | 35.0% | |
| CTACAAACTTGTAAAATGGG+AGG | + | chr5_1:54603957-54603976 | None:intergenic | 35.0% | |
| GTTGATTGATCTACTTGGAT+TGG | - | chr5_1:54604201-54604220 | Msa0737360:intron | 35.0% | |
| AACAACCTATGGGCATAAAA+GGG | + | chr5_1:54604551-54604570 | None:intergenic | 35.0% | |
| AAACAACCTATGGGCATAAA+AGG | + | chr5_1:54604552-54604571 | None:intergenic | 35.0% | |
| GGACAAACAAAACAACCTAT+GGG | + | chr5_1:54604561-54604580 | None:intergenic | 35.0% | |
| TGGACAAACAAAACAACCTA+TGG | + | chr5_1:54604562-54604581 | None:intergenic | 35.0% | |
| !!! | TAGGTTGTTTTGTTTGTCCA+CGG | - | chr5_1:54604562-54604581 | Msa0737360:CDS | 35.0% |
| !!! | CCCTAATTGTTTGTTGCTTT+TGG | - | chr5_1:54604636-54604655 | Msa0737360:intron | 35.0% |
| GACTTAAAAAACCAATAGCG+CGG | + | chr5_1:54604704-54604723 | None:intergenic | 35.0% | |
| CGTAAAACTATGAGGGAAAA+AGG | + | chr5_1:54604746-54604765 | None:intergenic | 35.0% | |
| ACCGGATTATTAGATTTAGC+TGG | - | chr5_1:54604842-54604861 | Msa0737360:intron | 35.0% | |
| TAGAGAGAGAGTTAGATTGA+GGG | + | chr5_1:54605139-54605158 | None:intergenic | 35.0% | |
| TCTGATGGTAGATACTAGAT+AGG | + | chr5_1:54605322-54605341 | None:intergenic | 35.0% | |
| !! | TTTCAAATTTGTTGGCAGAG+TGG | - | chr5_1:54605409-54605428 | Msa0737360:intron | 35.0% |
| TTATCCCATCTATCTTATCC+AGG | - | chr5_1:54605485-54605504 | Msa0737360:intron | 35.0% | |
| ! | CAAATAATGCTTTTCCAACC+TGG | + | chr5_1:54605506-54605525 | None:intergenic | 35.0% |
| ! | ATTATTTGATGGTCAGCTCT+TGG | - | chr5_1:54605518-54605537 | Msa0737360:intron | 35.0% |
| ! | AAATTTGAAATGGCTGCTTG+AGG | - | chr5_1:54605632-54605651 | Msa0737360:intron | 35.0% |
| GAATGATATCAGTGATGTTC+TGG | - | chr5_1:54605757-54605776 | Msa0737360:intron | 35.0% | |
| !!! | TTTTAGCATTGATGCAGATG+AGG | - | chr5_1:54605787-54605806 | Msa0737360:intron | 35.0% |
| !! | ACTGATTATGAGTTGATTCC+CGG | - | chr5_1:54605963-54605982 | Msa0737360:intron | 35.0% |
| ACGGAATACTAAAGTTACAG+AGG | - | chr5_1:54605989-54606008 | Msa0737360:intron | 35.0% | |
| !! | GCTCTGAAAGAAATATACCT+TGG | + | chr5_1:54606500-54606519 | None:intergenic | 35.0% |
| TGCATTCTATTCCAATACTC+TGG | - | chr5_1:54606760-54606779 | Msa0737360:intron | 35.0% | |
| GGTTCATTGTATTGAAGACT+TGG | - | chr5_1:54606817-54606836 | Msa0737360:intron | 35.0% | |
| ACCATTTCTCTACTTTCAGT+TGG | - | chr5_1:54607018-54607037 | Msa0737360:intron | 35.0% | |
| ACCAACTGAAAGTAGAGAAA+TGG | + | chr5_1:54607022-54607041 | None:intergenic | 35.0% | |
| ! | TGTTGTTTAGATGGATACTC+CGG | + | chr5_1:54607171-54607190 | None:intergenic | 35.0% |
| CTAAACAACATTTGGAAGAG+AGG | - | chr5_1:54607181-54607200 | Msa0737360:intron | 35.0% | |
| GAAGAATTCATCAATTCCCC+TGG | + | chr5_1:54602723-54602742 | None:intergenic | 40.0% | |
| CACATGTTCACTCTAGTACT+AGG | + | chr5_1:54602755-54602774 | None:intergenic | 40.0% | |
| GTGAACATGTGCTATGAGAA+AGG | - | chr5_1:54602764-54602783 | Msa0737360:intron | 40.0% | |
| ! | CAGTCATCTCAGTCTGTTTT+AGG | - | chr5_1:54603500-54603519 | Msa0737360:intron | 40.0% |
| ACCATTCTGCCATTGATCTT+TGG | - | chr5_1:54603600-54603619 | Msa0737360:intron | 40.0% | |
| TCCAAAGATCAATGGCAGAA+TGG | + | chr5_1:54603604-54603623 | None:intergenic | 40.0% | |
| GTGCTTATGACAATACAGTG+TGG | + | chr5_1:54603826-54603845 | None:intergenic | 40.0% | |
| GAGGAGGATTATTACGATCA+TGG | + | chr5_1:54603848-54603867 | None:intergenic | 40.0% | |
| ATTAACAAGCAAAGAGGAGG+AGG | + | chr5_1:54603864-54603883 | None:intergenic | 40.0% | |
| AGCATTAACAAGCAAAGAGG+AGG | + | chr5_1:54603867-54603886 | None:intergenic | 40.0% | |
| TGCTACAATTTGCAAGCTAG+AGG | - | chr5_1:54604024-54604043 | Msa0737360:intron | 40.0% | |
| GCTACAATTTGCAAGCTAGA+GGG | - | chr5_1:54604025-54604044 | Msa0737360:intron | 40.0% | |
| TGAAATGGGATGAAAGTCCA+AGG | - | chr5_1:54604358-54604377 | Msa0737360:intron | 40.0% | |
| GAAATGGGATGAAAGTCCAA+GGG | - | chr5_1:54604359-54604378 | Msa0737360:intron | 40.0% | |
| ! | CAATTGCAAGCACTGCAATA+GGG | + | chr5_1:54604414-54604433 | None:intergenic | 40.0% |
| ! | ACAATTGCAAGCACTGCAAT+AGG | + | chr5_1:54604415-54604434 | None:intergenic | 40.0% |
| GACTGAGTATGGAAATACTC+CGG | + | chr5_1:54604446-54604465 | None:intergenic | 40.0% | |
| !! | TTGTCCACGGTGTTTTTGAT+TGG | - | chr5_1:54604575-54604594 | Msa0737360:CDS | 40.0% |
| TAGACATGAAGGGTCTGTTT+AGG | + | chr5_1:54604809-54604828 | None:intergenic | 40.0% | |
| GACAAGTGCTTAGACATGAA+GGG | + | chr5_1:54604819-54604838 | None:intergenic | 40.0% | |
| AGACAAGTGCTTAGACATGA+AGG | + | chr5_1:54604820-54604839 | None:intergenic | 40.0% | |
| GTCTAAGCACTTGTCTTAAC+CGG | - | chr5_1:54604824-54604843 | Msa0737360:intron | 40.0% | |
| TAACTTTCCGTAGAGTCACT+TGG | - | chr5_1:54604926-54604945 | Msa0737360:intron | 40.0% | |
| CAAGATACCAAGTGACTCTA+CGG | + | chr5_1:54604936-54604955 | None:intergenic | 40.0% | |
| ACTTGACATAGGAAACCAAG+AGG | + | chr5_1:54605008-54605027 | None:intergenic | 40.0% | |
| GTAGAGAGAGAGTTAGATTG+AGG | + | chr5_1:54605140-54605159 | None:intergenic | 40.0% | |
| CAAAGAACAAGGTTGCAGTT+GGG | + | chr5_1:54605176-54605195 | None:intergenic | 40.0% | |
| TCAAAGAACAAGGTTGCAGT+TGG | + | chr5_1:54605177-54605196 | None:intergenic | 40.0% | |
| GAAGATTGGGTCAAAGAACA+AGG | + | chr5_1:54605187-54605206 | None:intergenic | 40.0% | |
| TTCTTTGACCCAATCTTCAC+AGG | - | chr5_1:54605189-54605208 | Msa0737360:intron | 40.0% | |
| CCAACCTGGATAAGATAGAT+GGG | + | chr5_1:54605492-54605511 | None:intergenic | 40.0% | |
| TCCAACCTGGATAAGATAGA+TGG | + | chr5_1:54605493-54605512 | None:intergenic | 40.0% | |
| ! | CTTGAGGCAAGTGCAATTTT+TGG | - | chr5_1:54605648-54605667 | Msa0737360:intron | 40.0% |
| AACTTTAGTATTCCGTCCAC+CGG | + | chr5_1:54605985-54606004 | None:intergenic | 40.0% | |
| AATGCTTTCTTGGAAGGGTT+CGG | - | chr5_1:54606080-54606099 | Msa0737360:intron | 40.0% | |
| ! | GTTCGGTGAAATAATTCCGA+AGG | - | chr5_1:54606097-54606116 | Msa0737360:intron | 40.0% |
| GAACTGGAACTATTGATCAG+TGG | - | chr5_1:54606146-54606165 | Msa0737360:intron | 40.0% | |
| CTAGCTCATTTGATTGATGC+TGG | - | chr5_1:54606273-54606292 | Msa0737360:intron | 40.0% | |
| TCCCAAAACCATTGAATCAC+CGG | + | chr5_1:54606415-54606434 | None:intergenic | 40.0% | |
| TGTTCAAGGTTTCAGCAAAG+AGG | - | chr5_1:54606438-54606457 | Msa0737360:intron | 40.0% | |
| ! | TTCCAAATGGTCGAGAGTTT+TGG | - | chr5_1:54606689-54606708 | Msa0737360:intron | 40.0% |
| !! | GTTTTGGTGTATGTGTCACA+TGG | - | chr5_1:54606705-54606724 | Msa0737360:intron | 40.0% |
| TTGTATTGAAGACTTGGAGC+TGG | - | chr5_1:54606823-54606842 | Msa0737360:intron | 40.0% | |
| CATGAAGCAAATGAGGGATT+TGG | - | chr5_1:54607219-54607238 | Msa0737360:intron | 40.0% | |
| AGCAAATGAGGGATTTGGAT+TGG | - | chr5_1:54607224-54607243 | Msa0737360:intron | 40.0% | |
| !! | AACATCTGCGACTGTTTTGA+AGG | - | chr5_1:54607492-54607511 | Msa0737360:intron | 40.0% |
| !! | ACATCTGCGACTGTTTTGAA+GGG | - | chr5_1:54607493-54607512 | Msa0737360:intron | 40.0% |
| TCTGATTAGGGGCAAAAGCA+AGG | + | chr5_1:54603192-54603211 | None:intergenic | 45.0% | |
| GAACGGGATCCAATTGCATT+AGG | + | chr5_1:54603544-54603563 | None:intergenic | 45.0% | |
| TGATGAAGACAGAGGCAGTT+GGG | + | chr5_1:54603798-54603817 | None:intergenic | 45.0% | |
| TGGGAGGGAACAACAATCAA+AGG | + | chr5_1:54603941-54603960 | None:intergenic | 45.0% | |
| CAGAAGGTTTCTCTTACCCT+TGG | + | chr5_1:54604378-54604397 | None:intergenic | 45.0% | |
| !! | GGGTTCTAAATCACAGCAGA+AGG | + | chr5_1:54604394-54604413 | None:intergenic | 45.0% |
| ! | TGTCACCCTTTTATGCCCAT+AGG | - | chr5_1:54604543-54604562 | Msa0737360:CDS | 45.0% |
| ATCGCCAATCAAAAACACCG+TGG | + | chr5_1:54604582-54604601 | None:intergenic | 45.0% | |
| !! | AAAGAAGCATTCCGCGCTAT+TGG | - | chr5_1:54604690-54604709 | Msa0737360:intron | 45.0% |
| AGAGAGAGTTAGATTGAGGG+CGG | + | chr5_1:54605136-54605155 | None:intergenic | 45.0% | |
| CCCATCTATCTTATCCAGGT+TGG | - | chr5_1:54605489-54605508 | Msa0737360:intron | 45.0% | |
| !! | GATTATGAGTTGATTCCCGG+TGG | - | chr5_1:54605966-54605985 | Msa0737360:intron | 45.0% |
| ACTTTAGTATTCCGTCCACC+GGG | + | chr5_1:54605984-54606003 | None:intergenic | 45.0% | |
| CCAAAACCATTGAATCACCG+GGG | + | chr5_1:54606413-54606432 | None:intergenic | 45.0% | |
| CCCAAAACCATTGAATCACC+GGG | + | chr5_1:54606414-54606433 | None:intergenic | 45.0% | |
| ! | CCCGGTGATTCAATGGTTTT+GGG | - | chr5_1:54606411-54606430 | Msa0737360:intron | 45.0% |
| !!! | GGTGATTCAATGGTTTTGGG+AGG | - | chr5_1:54606414-54606433 | Msa0737360:intron | 45.0% |
| !!! | TGGTTTTGGGAGGTTGTTCA+AGG | - | chr5_1:54606424-54606443 | Msa0737360:intron | 45.0% |
| AGGTTTCAGCAAAGAGGACA+AGG | - | chr5_1:54606444-54606463 | Msa0737360:intron | 45.0% | |
| CACCAAAACTCTCGACCATT+TGG | + | chr5_1:54606694-54606713 | None:intergenic | 45.0% | |
| ACGAGAGAAAGCCAGAGTAT+TGG | + | chr5_1:54606774-54606793 | None:intergenic | 45.0% | |
| !! | TCTAGAGGCACCTGAAACAT+TGG | + | chr5_1:54606900-54606919 | None:intergenic | 45.0% |
| ! | AATGTTTCAGGTGCCTCTAG+AGG | - | chr5_1:54606899-54606918 | Msa0737360:intron | 45.0% |
| ! | ATGTTTCAGGTGCCTCTAGA+GGG | - | chr5_1:54606900-54606919 | Msa0737360:intron | 45.0% |
| ACTTGCCTTCTGCTCATACA+TGG | - | chr5_1:54606994-54607013 | Msa0737360:intron | 45.0% | |
| TGGTACCATGTATGAGCAGA+AGG | + | chr5_1:54607002-54607021 | None:intergenic | 45.0% | |
| ! | ACATTTGCGACTGTTGGTGA+AGG | - | chr5_1:54607436-54607455 | Msa0737360:intron | 45.0% |
| ! | CATTTGCGACTGTTGGTGAA+GGG | - | chr5_1:54607437-54607456 | Msa0737360:intron | 45.0% |
| CACAACAGTCACAGATGTTG+GGG | + | chr5_1:54607637-54607656 | None:intergenic | 45.0% | |
| CCACAACAGTCACAGATGTT+GGG | + | chr5_1:54607638-54607657 | None:intergenic | 45.0% | |
| TCCACAACAGTCACAGATGT+TGG | + | chr5_1:54607639-54607658 | None:intergenic | 45.0% | |
| ACATCTGTGACTGTTGTGGA+AGG | - | chr5_1:54607639-54607658 | Msa0737360:intron | 45.0% | |
| CATCTGTGACTGTTGTGGAA+GGG | - | chr5_1:54607640-54607659 | Msa0737360:intron | 45.0% | |
| GCAGATTGCGACTGTTAGAA+GGG | + | chr5_1:54607686-54607705 | None:intergenic | 45.0% | |
| !! | TATTCATAATAAAAAAAAAA+TGG | - | chr5_1:54604232-54604251 | Msa0737360:intron | 5.0% |
| !! | TGTTATATATTTATTTAAAT+TGG | - | chr5_1:54607374-54607393 | Msa0737360:intron | 5.0% |
| !! | AAAAAAAAATAAAATTGAAT+GGG | + | chr5_1:54607403-54607422 | None:intergenic | 5.0% |
| !! | AAAAAAAAAATAAAATTGAA+TGG | + | chr5_1:54607404-54607423 | None:intergenic | 5.0% |
| !!! | GTTTTTTTAAAAAAAAATAA+AGG | + | chr5_1:54607470-54607489 | None:intergenic | 5.0% |
| GATGAAGACAGAGGCAGTTG+GGG | + | chr5_1:54603797-54603816 | None:intergenic | 50.0% | |
| GTGATGAAGACAGAGGCAGT+TGG | + | chr5_1:54603799-54603818 | None:intergenic | 50.0% | |
| CTGCCTCTGTCTTCATCACT+AGG | - | chr5_1:54603800-54603819 | Msa0737360:intron | 50.0% | |
| TGGCCTAGTGATGAAGACAG+AGG | + | chr5_1:54603806-54603825 | None:intergenic | 50.0% | |
| !! | ATGAGTTGATTCCCGGTGGA+CGG | - | chr5_1:54605970-54605989 | Msa0737360:intron | 50.0% |
| !! | TGGATATAGTGCTGCTTCCC+CGG | - | chr5_1:54606393-54606412 | Msa0737360:intron | 50.0% |
| ! | CCCCGGTGATTCAATGGTTT+TGG | - | chr5_1:54606410-54606429 | Msa0737360:intron | 50.0% |
| TCAGCAAAGAGGACAAGGCT+AGG | - | chr5_1:54606449-54606468 | Msa0737360:intron | 50.0% | |
| AGGCTGTTGCAGTTTGTGAC+AGG | - | chr5_1:54606469-54606488 | Msa0737360:intron | 50.0% | |
| GTTTGTGACAGGCACTTCCA+AGG | - | chr5_1:54606480-54606499 | Msa0737360:intron | 50.0% | |
| TGAAGACTTGGAGCTGGACT+TGG | - | chr5_1:54606829-54606848 | Msa0737360:intron | 50.0% | |
| AGTGCGCTAAAACCCTCTAG+AGG | + | chr5_1:54606915-54606934 | None:intergenic | 50.0% | |
| !! | GAGGGTTTTAGCGCACTTCA+AGG | - | chr5_1:54606918-54606937 | Msa0737360:intron | 50.0% |
| ! | ACTAAAGCGCTCCTTTGCGA+CGG | - | chr5_1:54607537-54607556 | Msa0737360:intron | 50.0% |
| ACAGTTGTCAACCGTCGCAA+AGG | + | chr5_1:54607551-54607570 | None:intergenic | 50.0% | |
| CCCAACATCTGTGACTGTTG+TGG | - | chr5_1:54607635-54607654 | Msa0737360:intron | 50.0% | |
| GGCAGATTGCGACTGTTAGA+AGG | + | chr5_1:54607687-54607706 | None:intergenic | 50.0% | |
| CTGCTTCCCCGGTGATTCAA+TGG | - | chr5_1:54606404-54606423 | Msa0737360:intron | 55.0% | |
| AACTGTCGCAGCACCTGTTG+CGG | - | chr5_1:54607565-54607584 | Msa0737360:intron | 55.0% | |
| TTGGAGTGGCTGTTCTGCGA+AGG | - | chr5_1:54607591-54607610 | Msa0737360:intron | 55.0% | |
| TGGAGTGGCTGTTCTGCGAA+GGG | - | chr5_1:54607592-54607611 | Msa0737360:intron | 55.0% | |
| ACCTGTTGCGGCAGTTGGAG+TGG | - | chr5_1:54607577-54607596 | Msa0737360:intron | 60.0% | |
| GCAGCACCTGTTGCGGCAGT+TGG | - | chr5_1:54607572-54607591 | Msa0737360:intron | 65.0% | |
| GCCACTCCAACTGCCGCAAC+AGG | + | chr5_1:54607581-54607600 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 54602718 | 54607851 | 54602718 | ID=Msa0737360;Name=Msa0737360 |
| chr5_1 | mRNA | 54602718 | 54607851 | 54602718 | ID=Msa0737360-mRNA-1;Parent=Msa0737360;Name=Msa0737360-mRNA-1;_AED=0.42;_eAED=0.46;_QI=14|0.37|0.22|0.88|0.37|0.55|9|0|254 |
| chr5_1 | exon | 54607814 | 54607851 | 54607814 | ID=Msa0737360-mRNA-1:exon:15348;Parent=Msa0737360-mRNA-1 |
| chr5_1 | exon | 54606189 | 54606215 | 54606189 | ID=Msa0737360-mRNA-1:exon:15347;Parent=Msa0737360-mRNA-1 |
| chr5_1 | exon | 54604982 | 54605062 | 54604982 | ID=Msa0737360-mRNA-1:exon:15346;Parent=Msa0737360-mRNA-1 |
| chr5_1 | exon | 54604731 | 54604811 | 54604731 | ID=Msa0737360-mRNA-1:exon:15345;Parent=Msa0737360-mRNA-1 |
| chr5_1 | exon | 54604384 | 54604609 | 54604384 | ID=Msa0737360-mRNA-1:exon:15344;Parent=Msa0737360-mRNA-1 |
| chr5_1 | exon | 54604068 | 54604207 | 54604068 | ID=Msa0737360-mRNA-1:exon:15343;Parent=Msa0737360-mRNA-1 |
| chr5_1 | exon | 54603611 | 54603660 | 54603611 | ID=Msa0737360-mRNA-1:exon:15342;Parent=Msa0737360-mRNA-1 |
| chr5_1 | exon | 54603294 | 54603420 | 54603294 | ID=Msa0737360-mRNA-1:exon:15341;Parent=Msa0737360-mRNA-1 |
| chr5_1 | exon | 54602718 | 54602723 | 54602718 | ID=Msa0737360-mRNA-1:exon:15340;Parent=Msa0737360-mRNA-1 |
| chr5_1 | five_prime_UTR | 54607838 | 54607851 | 54607838 | ID=Msa0737360-mRNA-1:five_prime_utr;Parent=Msa0737360-mRNA-1 |
| chr5_1 | CDS | 54607814 | 54607837 | 54607814 | ID=Msa0737360-mRNA-1:cds;Parent=Msa0737360-mRNA-1 |
| chr5_1 | CDS | 54606189 | 54606215 | 54606189 | ID=Msa0737360-mRNA-1:cds;Parent=Msa0737360-mRNA-1 |
| chr5_1 | CDS | 54604982 | 54605062 | 54604982 | ID=Msa0737360-mRNA-1:cds;Parent=Msa0737360-mRNA-1 |
| chr5_1 | CDS | 54604731 | 54604811 | 54604731 | ID=Msa0737360-mRNA-1:cds;Parent=Msa0737360-mRNA-1 |
| chr5_1 | CDS | 54604384 | 54604609 | 54604384 | ID=Msa0737360-mRNA-1:cds;Parent=Msa0737360-mRNA-1 |
| chr5_1 | CDS | 54604068 | 54604207 | 54604068 | ID=Msa0737360-mRNA-1:cds;Parent=Msa0737360-mRNA-1 |
| chr5_1 | CDS | 54603611 | 54603660 | 54603611 | ID=Msa0737360-mRNA-1:cds;Parent=Msa0737360-mRNA-1 |
| chr5_1 | CDS | 54603294 | 54603420 | 54603294 | ID=Msa0737360-mRNA-1:cds;Parent=Msa0737360-mRNA-1 |
| chr5_1 | CDS | 54602718 | 54602723 | 54602718 | ID=Msa0737360-mRNA-1:cds;Parent=Msa0737360-mRNA-1 |
| Gene Sequence |
| Protein sequence |
