Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0739380 | XP_003616891.1 | 99.474 | 190 | 1 | 0 | 1 | 190 | 1 | 190 | 8.85e-137 | 390 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0739380 | sp|Q9STT2|VPS29_ARATH | 87.368 | 190 | 22 | 1 | 1 | 188 | 1 | 190 | 8.43e-123 | 347 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0739380 | B7FMU9 | 99.474 | 190 | 1 | 0 | 1 | 190 | 1 | 190 | 4.23e-137 | 390 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0739380 | Msa0860030 | 0.803812 | 2.915817e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0739380 | MtrunA17_Chr5g0439101 | 99.474 | 190 | 1 | 0 | 1 | 190 | 1 | 190 | 8.14e-141 | 390 |
| Msa0739380 | MtrunA17_Chr3g0119621 | 92.593 | 189 | 14 | 0 | 1 | 189 | 1 | 189 | 8.16e-133 | 369 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0739380 | AT3G47810.2 | 87.368 | 190 | 22 | 1 | 1 | 188 | 1 | 190 | 8.57e-124 | 347 |
| Msa0739380 | AT3G47810.1 | 87.368 | 190 | 22 | 1 | 1 | 188 | 1 | 190 | 8.57e-124 | 347 |
| Msa0739380 | AT3G47810.3 | 87.368 | 190 | 22 | 1 | 1 | 188 | 1 | 190 | 8.57e-124 | 347 |
Find 98 sgRNAs with CRISPR-Local
Find 333 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGTTTGAAACACATGTATT+TGG | 0.238943 | 5_1:+57556607 | Msa0739380:three_prime_UTR |
| CAATCACATTCACTGGTAAA+AGG | 0.252473 | 5_1:-57556704 | None:intergenic |
| GGCACAGTCCCAACTTAAAT+TGG | 0.289654 | 5_1:-57555348 | None:intergenic |
| TTGAACTTTGCAGGAATATC+AGG | 0.293631 | 5_1:-57554187 | None:intergenic |
| AGAGAGAGTGAGAGAGAGTT+GGG | 0.309564 | 5_1:-57552508 | None:intergenic |
| AGCATGGATTTGAACTTTGC+AGG | 0.319977 | 5_1:-57554196 | None:intergenic |
| GCCGCTCTCCTCCCGGTGTT+TGG | 0.324799 | 5_1:+57552443 | Msa0739380:five_prime_UTR |
| ATGGTGCTGGTCTTGGCCCT+AGG | 0.338873 | 5_1:+57554139 | Msa0739380:CDS |
| ATAGAGAGAACCTTTGTAAA+TGG | 0.359028 | 5_1:-57552570 | None:intergenic |
| ATGGTTAGTGTCTTGGTCTC+TGG | 0.361354 | 5_1:-57555322 | None:intergenic |
| ACTTATTGATGGAGAGGTTA+AGG | 0.377877 | 5_1:+57556436 | Msa0739380:CDS |
| ATTGAGGATGGTGCTGGTCT+TGG | 0.383939 | 5_1:+57554132 | Msa0739380:exon |
| GGTCAGGACAAAGAGTCTTT+AGG | 0.407966 | 5_1:-57555258 | None:intergenic |
| CAGGAATATCAGGCGCCCTA+TGG | 0.417399 | 5_1:-57554177 | None:intergenic |
| GACAGAAATGTTCAAAGAGC+AGG | 0.418055 | 5_1:-57556497 | None:intergenic |
| TGCTCAAATGCTTATAATTG+AGG | 0.418754 | 5_1:+57552378 | None:intergenic |
| TGGTGCTGGTCTTGGCCCTA+GGG | 0.418770 | 5_1:+57554140 | Msa0739380:CDS |
| ATAAATCCAGGTTCTGCATC+TGG | 0.431341 | 5_1:+57556326 | Msa0739380:CDS |
| AACCATTGGCCAATTTAAGT+TGG | 0.436265 | 5_1:+57555339 | Msa0739380:CDS |
| CATGTATTTGGCAATATCCT+AGG | 0.436373 | 5_1:+57556619 | Msa0739380:three_prime_UTR |
| GGGACTGTGCCATGGTCATC+AGG | 0.438213 | 5_1:+57555360 | Msa0739380:CDS |
| GAGAGAGAGTGAGAGAGAGT+TGG | 0.438595 | 5_1:-57552509 | None:intergenic |
| AATCACATTCACTGGTAAAA+GGG | 0.438900 | 5_1:-57556703 | None:intergenic |
| ACCATTGGCCAATTTAAGTT+GGG | 0.440426 | 5_1:+57555340 | Msa0739380:CDS |
| TATGTATATGAACTTATTGA+TGG | 0.449262 | 5_1:+57556425 | Msa0739380:CDS |
| TTGATTATTGAGGATGGTGC+TGG | 0.461159 | 5_1:+57554126 | Msa0739380:exon |
| AGGAATATCAGGCGCCCTAT+GGG | 0.464637 | 5_1:-57554176 | None:intergenic |
| TCACAAATTTATCAAATCCT+AGG | 0.466257 | 5_1:-57556636 | None:intergenic |
| TTGGCCAATGGTTAGTGTCT+TGG | 0.466580 | 5_1:-57555329 | None:intergenic |
| ATGTCCATGAGCACAAAACT+TGG | 0.470525 | 5_1:-57556380 | None:intergenic |
| AAAACTTGGGTTCACATCAT+AGG | 0.472151 | 5_1:-57556366 | None:intergenic |
| AATTGGTGCCGCTCTCCTCC+CGG | 0.473202 | 5_1:+57552436 | Msa0739380:five_prime_UTR |
| ATCCAGCACATCATTTGTAC+TGG | 0.480280 | 5_1:+57554232 | Msa0739380:CDS |
| TAGGCACCAGATGCAGAACC+TGG | 0.486891 | 5_1:-57556332 | None:intergenic |
| TTCCTCCTTCAAAGTTCATA+CGG | 0.486985 | 5_1:+57556568 | Msa0739380:three_prime_UTR |
| AGAGAACCTTTGTAAATGGC+GGG | 0.488622 | 5_1:-57552566 | None:intergenic |
| TTCCAGTACAAATGATGTGC+TGG | 0.495301 | 5_1:-57554234 | None:intergenic |
| TTCAAATCCATGCTTGTCCC+TGG | 0.497945 | 5_1:+57554205 | Msa0739380:CDS |
| AACATCCGTATGAACTTTGA+AGG | 0.499732 | 5_1:-57556573 | None:intergenic |
| CCACGAGTTATATGCAGGTC+AGG | 0.501875 | 5_1:-57555274 | None:intergenic |
| ATGATGTGCTGGATCTTGCC+AGG | 0.502900 | 5_1:-57554223 | None:intergenic |
| ACTAAACAAATAAATAGAAA+AGG | 0.504053 | 5_1:-57556539 | None:intergenic |
| TGGTTGTGAAGGTTATTCCA+TGG | 0.504565 | 5_1:+57556195 | Msa0739380:intron |
| TCTAGACCAATCACATTCAC+TGG | 0.512682 | 5_1:-57556711 | None:intergenic |
| AAGTTGATCTGACGTGGAAT+TGG | 0.515813 | 5_1:+57552419 | Msa0739380:five_prime_UTR |
| GGTTGTGAAGGTTATTCCAT+GGG | 0.518450 | 5_1:+57556196 | Msa0739380:intron |
| GTAGCATCGCCAGTGAGTCT+AGG | 0.532547 | 5_1:-57556223 | None:intergenic |
| GAGTCACTCGACCGATCGGA+AGG | 0.538304 | 5_1:-57552484 | None:intergenic |
| GAGAGAGTGAGAGAGAGTTG+GGG | 0.540844 | 5_1:-57552507 | None:intergenic |
| AAAGAGTCTTTAGGTAGTCA+TGG | 0.540944 | 5_1:-57555249 | None:intergenic |
| GGTGGTGTGGTTATAAATCC+AGG | 0.541473 | 5_1:+57556314 | Msa0739380:CDS |
| CACTCGACCGATCGGAAGGT+GGG | 0.543749 | 5_1:-57552480 | None:intergenic |
| GGATATGCATATACCCCATA+GGG | 0.544403 | 5_1:+57554162 | Msa0739380:CDS |
| GGGATATGCATATACCCCAT+AGG | 0.550208 | 5_1:+57554161 | Msa0739380:CDS |
| GGGGTATATGCATATCCCCT+AGG | 0.558439 | 5_1:-57554156 | None:intergenic |
| ACCAAACACCGGGAGGAGAG+CGG | 0.563102 | 5_1:-57552444 | None:intergenic |
| GTTTGTATGCAGTAAACTGA+TGG | 0.568023 | 5_1:-57556286 | None:intergenic |
| TCTCTCCCCGCCATTTACAA+AGG | 0.571825 | 5_1:+57552560 | Msa0739380:intron |
| ATTATGTGACTGATTAGCAA+TGG | 0.572763 | 5_1:+57556670 | Msa0739380:three_prime_UTR |
| GGTGCTGGTCTTGGCCCTAG+GGG | 0.574862 | 5_1:+57554141 | Msa0739380:CDS |
| ATGGGGAGACCTAGACTCAC+TGG | 0.579888 | 5_1:+57556214 | Msa0739380:CDS |
| ATCATAGGTCATGCTGCTGT+AGG | 0.582776 | 5_1:-57556351 | None:intergenic |
| ACAGAAATGTTCAAAGAGCA+GGG | 0.584552 | 5_1:-57556496 | None:intergenic |
| GAGAGAACCTTTGTAAATGG+CGG | 0.586286 | 5_1:-57552567 | None:intergenic |
| TTTAAGTTGGGACTGTGCCA+TGG | 0.588088 | 5_1:+57555352 | Msa0739380:CDS |
| GACGTAGACATCCTTGTCAC+AGG | 0.588413 | 5_1:+57556257 | Msa0739380:CDS |
| GGGTATATGCATATCCCCTA+GGG | 0.588466 | 5_1:-57554155 | None:intergenic |
| TCACTCGACCGATCGGAAGG+TGG | 0.591086 | 5_1:-57552481 | None:intergenic |
| AGAGAGTGAGAGAGAGTTGG+GGG | 0.595973 | 5_1:-57552506 | None:intergenic |
| CATCGATGCTCTGCGTGTCG+TGG | 0.600592 | 5_1:+57556400 | Msa0739380:CDS |
| TCCCAACTTAAATTGGCCAA+TGG | 0.604696 | 5_1:-57555341 | None:intergenic |
| ATATGAACTTATTGATGGAG+AGG | 0.605775 | 5_1:+57556430 | Msa0739380:CDS |
| TGTCCATGAGCACAAAACTT+GGG | 0.608818 | 5_1:-57556379 | None:intergenic |
| GATCTTGCCAGGGACAAGCA+TGG | 0.611475 | 5_1:-57554212 | None:intergenic |
| ACTCACCACGAGTTATATGC+AGG | 0.614802 | 5_1:-57555279 | None:intergenic |
| ATCACATTCACTGGTAAAAG+GGG | 0.615305 | 5_1:-57556702 | None:intergenic |
| TCTACCGCCCACCTTCCGAT+CGG | 0.621428 | 5_1:+57552473 | Msa0739380:five_prime_UTR |
| AAAATCACACCTGATGACCA+TGG | 0.633549 | 5_1:-57555369 | None:intergenic |
| GAGACCAAGACACTAACCAT+TGG | 0.634137 | 5_1:+57555325 | Msa0739380:CDS |
| TAATAACAAGGTGAAGATCG+TGG | 0.637393 | 5_1:-57556822 | None:intergenic |
| ATCCGTATGAACTTTGAAGG+AGG | 0.649119 | 5_1:-57556570 | None:intergenic |
| TAGAATCAAAACCAAACACC+GGG | 0.652600 | 5_1:-57552454 | None:intergenic |
| ATACAAACACGAGGGTGGTG+TGG | 0.656040 | 5_1:+57556301 | Msa0739380:CDS |
| TTTGTATGCAGTAAACTGAT+GGG | 0.657847 | 5_1:-57556285 | None:intergenic |
| AGTGAGTCTAGGTCTCCCCA+TGG | 0.658514 | 5_1:-57556212 | None:intergenic |
| GTAGAATCAAAACCAAACAC+CGG | 0.658578 | 5_1:-57552455 | None:intergenic |
| TGATGTGCTGGATCTTGCCA+GGG | 0.662880 | 5_1:-57554222 | None:intergenic |
| TTAGTGAAGTTGATCTGACG+TGG | 0.666952 | 5_1:+57552413 | Msa0739380:five_prime_UTR |
| TCGACCGATCGGAAGGTGGG+CGG | 0.670009 | 5_1:-57552477 | None:intergenic |
| GGAATATCAGGCGCCCTATG+GGG | 0.674568 | 5_1:-57554175 | None:intergenic |
| GAGAACCTTTGTAAATGGCG+GGG | 0.680026 | 5_1:-57552565 | None:intergenic |
| GTTGTGAAGGTTATTCCATG+GGG | 0.697159 | 5_1:+57556197 | Msa0739380:intron |
| CCTGACCTGCATATAACTCG+TGG | 0.703603 | 5_1:+57555274 | Msa0739380:CDS |
| ACTGCATACAAACACGAGGG+TGG | 0.705173 | 5_1:+57556296 | Msa0739380:CDS |
| AATCAAAACCAAACACCGGG+AGG | 0.706164 | 5_1:-57552451 | None:intergenic |
| GATGGGTGTGACCTGTGACA+AGG | 0.707385 | 5_1:-57556268 | None:intergenic |
| GTTTACTGCATACAAACACG+AGG | 0.718182 | 5_1:+57556292 | Msa0739380:CDS |
| TTTACTGCATACAAACACGA+GGG | 0.754644 | 5_1:+57556293 | Msa0739380:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAAAAAAAAAAAAAAGAC+CGG | - | chr5_1:57553038-57553057 | None:intergenic | 10.0% |
| !! | ACAGTATAAAAAAAAAAAAC+AGG | - | chr5_1:57552631-57552650 | None:intergenic | 15.0% |
| !! | TATTAAACAACTAGTAAAAT+TGG | + | chr5_1:57554679-57554698 | Msa0739380:intron | 15.0% |
| !! | ATTAAACAACTAGTAAAATT+GGG | + | chr5_1:57554680-57554699 | Msa0739380:intron | 15.0% |
| !! | TGAAAAAATTAACAAGAAAA+GGG | - | chr5_1:57554859-57554878 | None:intergenic | 15.0% |
| !! | ATGAAAAAATTAACAAGAAA+AGG | - | chr5_1:57554860-57554879 | None:intergenic | 15.0% |
| !!! | AGTTTTATATGCATAAAATA+TGG | - | chr5_1:57554903-57554922 | None:intergenic | 15.0% |
| !!! | ATATTTTATGCATATAAAAC+TGG | + | chr5_1:57554902-57554921 | Msa0739380:intron | 15.0% |
| !!! | ATTTTGTTGCTTTTTTTTTT+TGG | - | chr5_1:57555845-57555864 | None:intergenic | 15.0% |
| !! | AAAAAAGCAACAAAATTTAT+TGG | + | chr5_1:57555849-57555868 | Msa0739380:intron | 15.0% |
| !! | ACTAAACAAATAAATAGAAA+AGG | - | chr5_1:57556542-57556561 | None:intergenic | 15.0% |
| !!! | TCATTTTCTCAAATTATTGT+TGG | + | chr5_1:57552963-57552982 | Msa0739380:intron | 20.0% |
| !!! | CTTTTTTATATGAGACAAAT+GGG | - | chr5_1:57553124-57553143 | None:intergenic | 20.0% |
| !!! | TCTTTTTTATATGAGACAAA+TGG | - | chr5_1:57553125-57553144 | None:intergenic | 20.0% |
| !!! | TATCATTTTTATTGTTGACA+AGG | + | chr5_1:57553155-57553174 | Msa0739380:intron | 20.0% |
| !!! | TTTAATTTGGTGCTTATTTA+TGG | + | chr5_1:57553435-57553454 | Msa0739380:intron | 20.0% |
| !! | GAATCAAATATTCAAAATAG+AGG | + | chr5_1:57553763-57553782 | Msa0739380:intron | 20.0% |
| !!! | ATATTCAAAATAGAGGTTTT+TGG | + | chr5_1:57553770-57553789 | Msa0739380:intron | 20.0% |
| !! | AATAGTTATATCGAATAAGA+TGG | - | chr5_1:57554280-57554299 | None:intergenic | 20.0% |
| !! | TTCTAATTCAATATTATGAG+AGG | + | chr5_1:57554349-57554368 | Msa0739380:intron | 20.0% |
| !! | GAAAAAATTAACAAGAAAAG+GGG | - | chr5_1:57554858-57554877 | None:intergenic | 20.0% |
| !! | TAATCGCTAAAATCAAAATA+AGG | - | chr5_1:57555416-57555435 | None:intergenic | 20.0% |
| !!! | TTTGATAACGACAAATAAAT+AGG | - | chr5_1:57555483-57555502 | None:intergenic | 20.0% |
| !! | TGAATAACAAAACATCATTA+AGG | - | chr5_1:57556116-57556135 | None:intergenic | 20.0% |
| !! | TATGTATATGAACTTATTGA+TGG | + | chr5_1:57556425-57556444 | Msa0739380:CDS | 20.0% |
| ! | TATATAGCCACAAAATTTAG+AGG | + | chr5_1:57552836-57552855 | Msa0739380:intron | 25.0% |
| ! | AAAAAAAAAAAAAGACCGGA+GGG | - | chr5_1:57553034-57553053 | None:intergenic | 25.0% |
| ! | AAAAAAAAAAAAAAGACCGG+AGG | - | chr5_1:57553035-57553054 | None:intergenic | 25.0% |
| ! | AAAGACAAATAAGTCAACAA+TGG | + | chr5_1:57553060-57553079 | Msa0739380:intron | 25.0% |
| ! | TTGTCTCATATAAAAAAGAC+CGG | + | chr5_1:57553126-57553145 | Msa0739380:intron | 25.0% |
| !!! | ATCTTAAAGCATTGAGAATA+CGG | - | chr5_1:57553318-57553337 | None:intergenic | 25.0% |
| !!! | CAATGCTTTAAGATTTTTAG+TGG | + | chr5_1:57553324-57553343 | Msa0739380:intron | 25.0% |
| !!! | ACATGATGTGTGTTTTAATT+TGG | + | chr5_1:57553422-57553441 | Msa0739380:intron | 25.0% |
| !!! | CTTTGTTAATTAGCTTGTTA+CGG | + | chr5_1:57553627-57553646 | Msa0739380:intron | 25.0% |
| !! | GAAGTGTTTGATAAAATTAG+CGG | - | chr5_1:57553935-57553954 | None:intergenic | 25.0% |
| ! | CATAGAATATGAACTTATAG+AGG | - | chr5_1:57553979-57553998 | None:intergenic | 25.0% |
| ! | TTATTTATTGAAGACAAGAG+AGG | - | chr5_1:57554015-57554034 | None:intergenic | 25.0% |
| !!! | CTTTCAGTTTTTGATTATTG+AGG | + | chr5_1:57554116-57554135 | Msa0739380:five_prime_UTR | 25.0% |
| ! | ATGTGACAAAACAAAATTTG+AGG | - | chr5_1:57554600-57554619 | None:intergenic | 25.0% |
| ! | GATAATAGGTGTAATACAAA+GGG | - | chr5_1:57555063-57555082 | None:intergenic | 25.0% |
| ! | AGATAATAGGTGTAATACAA+AGG | - | chr5_1:57555064-57555083 | None:intergenic | 25.0% |
| !! | ATAGTATAGTACGTTTGTTA+TGG | + | chr5_1:57555101-57555120 | Msa0739380:intron | 25.0% |
| !!! | AACTTCTAAGATGAGTTTTA+TGG | + | chr5_1:57555208-57555227 | Msa0739380:intron | 25.0% |
| !! | GTTTTATGGCATTTAAATTC+AGG | + | chr5_1:57555222-57555241 | Msa0739380:intron | 25.0% |
| ! | GAAATGAGATGATAAATGAT+TGG | + | chr5_1:57555574-57555593 | Msa0739380:intron | 25.0% |
| !!! | TTTTTGGTTACAGAAAGTTT+AGG | - | chr5_1:57555829-57555848 | None:intergenic | 25.0% |
| !! | ACAAAATTTATTGGTTGTCT+TGG | + | chr5_1:57555858-57555877 | Msa0739380:intron | 25.0% |
| ! | AAAACATCATTAAGGAAGAT+GGG | - | chr5_1:57556108-57556127 | None:intergenic | 25.0% |
| !! | AAGTTTGAAACACATGTATT+TGG | + | chr5_1:57556607-57556626 | Msa0739380:three_prime_UTR | 25.0% |
| ! | TCACAAATTTATCAAATCCT+AGG | - | chr5_1:57556639-57556658 | None:intergenic | 25.0% |
| !!! | TCAGTCACATAATTTTTTCA+CGG | - | chr5_1:57556663-57556682 | None:intergenic | 25.0% |
| ATAGAGAGAACCTTTGTAAA+TGG | - | chr5_1:57552573-57552592 | None:intergenic | 30.0% | |
| CGAATCAAAAACTAATTCAG+TGG | - | chr5_1:57552711-57552730 | None:intergenic | 30.0% | |
| ! | CTCAAAACCTCTAAATTTTG+TGG | - | chr5_1:57552846-57552865 | None:intergenic | 30.0% |
| !!! | AGGTTTTGAGATCAGTAAAA+AGG | + | chr5_1:57552856-57552875 | Msa0739380:intron | 30.0% |
| TTGAGATCAGTAAAAAGGAT+AGG | + | chr5_1:57552861-57552880 | Msa0739380:intron | 30.0% | |
| AGGAAAAACATGCAAATCTT+TGG | + | chr5_1:57552881-57552900 | Msa0739380:intron | 30.0% | |
| AATGACATAATCACATGTGT+CGG | - | chr5_1:57552948-57552967 | None:intergenic | 30.0% | |
| AATAAAAATGATACTCCCTC+CGG | - | chr5_1:57553148-57553167 | None:intergenic | 30.0% | |
| ! | TCAACTATGAATGAGTTGAA+TGG | + | chr5_1:57553271-57553290 | Msa0739380:intron | 30.0% |
| !! | TCTTAAAGCATTGAGAATAC+GGG | - | chr5_1:57553317-57553336 | None:intergenic | 30.0% |
| !! | TTTGATCATTAGCTTGTTGA+TGG | + | chr5_1:57553373-57553392 | Msa0739380:intron | 30.0% |
| !! | ATTTGGTGCTTATTTATGGA+TGG | + | chr5_1:57553439-57553458 | Msa0739380:intron | 30.0% |
| TAGGATAGAGTAATCTTCTT+AGG | + | chr5_1:57553519-57553538 | Msa0739380:intron | 30.0% | |
| GCCTTATGGTAATAAGATAA+TGG | + | chr5_1:57553550-57553569 | Msa0739380:intron | 30.0% | |
| GCCATTATCTTATTACCATA+AGG | - | chr5_1:57553554-57553573 | None:intergenic | 30.0% | |
| GAAACACACTATAGTCTAAT+GGG | - | chr5_1:57553809-57553828 | None:intergenic | 30.0% | |
| TGAAACACACTATAGTCTAA+TGG | - | chr5_1:57553810-57553829 | None:intergenic | 30.0% | |
| !! | TCGCTGTTCTTTTTGTTTAT+GGG | + | chr5_1:57554060-57554079 | Msa0739380:intron | 30.0% |
| !! | CAGTTTTTGATTATTGAGGA+TGG | + | chr5_1:57554120-57554139 | Msa0739380:exon | 30.0% |
| GTACAAGATCATTTAACTGT+AGG | + | chr5_1:57554571-57554590 | Msa0739380:intron | 30.0% | |
| TTGTCCAAACTTCTTAGTTA+AGG | + | chr5_1:57554641-57554660 | Msa0739380:intron | 30.0% | |
| ACTACTTTCTTGTATCTCAA+GGG | - | chr5_1:57554938-57554957 | None:intergenic | 30.0% | |
| AACTACTTTCTTGTATCTCA+AGG | - | chr5_1:57554939-57554958 | None:intergenic | 30.0% | |
| AGTAGTTGAATAATGATTGC+AGG | + | chr5_1:57554952-57554971 | Msa0739380:intron | 30.0% | |
| GATAGATGCAGAAAGATAAT+AGG | - | chr5_1:57555077-57555096 | None:intergenic | 30.0% | |
| CAAATCATCGTATTAGTCAA+TGG | - | chr5_1:57555165-57555184 | None:intergenic | 30.0% | |
| !! | TTTCTGCTCCTTTTTAATTG+TGG | + | chr5_1:57555439-57555458 | Msa0739380:intron | 30.0% |
| TGCAAATGCCACAATTAAAA+AGG | - | chr5_1:57555450-57555469 | None:intergenic | 30.0% | |
| !!! | CCATTTTAGTTGTTGCTTTA+GGG | - | chr5_1:57555892-57555911 | None:intergenic | 30.0% |
| !!! | TCCATTTTAGTTGTTGCTTT+AGG | - | chr5_1:57555893-57555912 | None:intergenic | 30.0% |
| AAGCAACAACTAAAATGGAA+TGG | + | chr5_1:57555894-57555913 | Msa0739380:intron | 30.0% | |
| AACAACTAAAATGGAATGGA+GGG | + | chr5_1:57555898-57555917 | Msa0739380:intron | 30.0% | |
| ACAAGTGCAATCAAAAGTAA+CGG | - | chr5_1:57556062-57556081 | None:intergenic | 30.0% | |
| !! | ACTTTTGATTGCACTTGTAT+AGG | + | chr5_1:57556064-57556083 | Msa0739380:intron | 30.0% |
| CAAAACATCATTAAGGAAGA+TGG | - | chr5_1:57556109-57556128 | None:intergenic | 30.0% | |
| !!! | CATATCAGAACACAGTTTTT+TGG | - | chr5_1:57556145-57556164 | None:intergenic | 30.0% |
| CAATGATCATGTCTTCTTAA+TGG | + | chr5_1:57556175-57556194 | Msa0739380:intron | 30.0% | |
| TTTGTATGCAGTAAACTGAT+GGG | - | chr5_1:57556288-57556307 | None:intergenic | 30.0% | |
| ATATGAACTTATTGATGGAG+AGG | + | chr5_1:57556430-57556449 | Msa0739380:CDS | 30.0% | |
| ATTATGTGACTGATTAGCAA+TGG | + | chr5_1:57556670-57556689 | Msa0739380:three_prime_UTR | 30.0% | |
| AATCACATTCACTGGTAAAA+GGG | - | chr5_1:57556706-57556725 | None:intergenic | 30.0% | |
| TAGAATCAAAACCAAACACC+GGG | - | chr5_1:57552457-57552476 | None:intergenic | 35.0% | |
| GTAGAATCAAAACCAAACAC+CGG | - | chr5_1:57552458-57552477 | None:intergenic | 35.0% | |
| GGAATTGAAGAAGCAAGAAA+CGG | - | chr5_1:57552610-57552629 | None:intergenic | 35.0% | |
| TAGTCAACTATGAAGCATAC+CGG | - | chr5_1:57553006-57553025 | None:intergenic | 35.0% | |
| TCTCATATAAAAAAGACCGG+AGG | + | chr5_1:57553129-57553148 | Msa0739380:intron | 35.0% | |
| CTCATATAAAAAAGACCGGA+GGG | + | chr5_1:57553130-57553149 | Msa0739380:intron | 35.0% | |
| TTCAAGTGTGAGTTGTTACT+CGG | + | chr5_1:57553245-57553264 | Msa0739380:intron | 35.0% | |
| ! | ACTATGAATGAGTTGAATGG+AGG | + | chr5_1:57553274-57553293 | Msa0739380:intron | 35.0% |
| GCTTATTTATGGATGGAGAT+TGG | + | chr5_1:57553446-57553465 | Msa0739380:intron | 35.0% | |
| ! | TTTGATGCTAGCTTAACTCT+AGG | + | chr5_1:57553500-57553519 | Msa0739380:intron | 35.0% |
| TTTCCTTGTTGGACATTTGT+AGG | + | chr5_1:57553587-57553606 | Msa0739380:intron | 35.0% | |
| !! | TAGCTTGTTACGGTTATGTT+AGG | + | chr5_1:57553637-57553656 | Msa0739380:intron | 35.0% |
| TCAAGAAGATGTCTTATCCT+TGG | + | chr5_1:57553681-57553700 | Msa0739380:intron | 35.0% | |
| AGACTATAGTGTGTTTCACT+AGG | + | chr5_1:57553812-57553831 | Msa0739380:intron | 35.0% | |
| AGTGTGTTTCACTAGGTTAT+AGG | + | chr5_1:57553819-57553838 | Msa0739380:intron | 35.0% | |
| GTGTGTTTCACTAGGTTATA+GGG | + | chr5_1:57553820-57553839 | Msa0739380:intron | 35.0% | |
| !! | GTCGCTGTTCTTTTTGTTTA+TGG | + | chr5_1:57554059-57554078 | Msa0739380:intron | 35.0% |
| TTGAACTTTGCAGGAATATC+AGG | - | chr5_1:57554190-57554209 | None:intergenic | 35.0% | |
| ATTATGAGAGGACAATTGAC+AGG | + | chr5_1:57554361-57554380 | Msa0739380:intron | 35.0% | |
| TTATGAGAGGACAATTGACA+GGG | + | chr5_1:57554362-57554381 | Msa0739380:intron | 35.0% | |
| ! | GGTCTGAATATTTTACCTCT+TGG | + | chr5_1:57554398-57554417 | Msa0739380:intron | 35.0% |
| ATTCATATGGTCAATCCAAG+AGG | - | chr5_1:57554416-57554435 | None:intergenic | 35.0% | |
| AAGATGTCCTTGGATTCATA+TGG | - | chr5_1:57554429-57554448 | None:intergenic | 35.0% | |
| ! | TTGTAGAATTCGAGTTCATC+AGG | + | chr5_1:57554522-57554541 | Msa0739380:intron | 35.0% |
| TCCAAACTTCTTAGTTAAGG+TGG | + | chr5_1:57554644-57554663 | Msa0739380:intron | 35.0% | |
| TCCACCTTAACTAAGAAGTT+TGG | - | chr5_1:57554648-57554667 | None:intergenic | 35.0% | |
| TAGTAAAATTGGGTAACCCT+GGG | + | chr5_1:57554690-57554709 | Msa0739380:intron | 35.0% | |
| AAATTAACAAGAAAAGGGGC+AGG | - | chr5_1:57554854-57554873 | None:intergenic | 35.0% | |
| CAAAGGGAGTAAATAATGCA+TGG | - | chr5_1:57555047-57555066 | None:intergenic | 35.0% | |
| AAAGAGTCTTTAGGTAGTCA+TGG | - | chr5_1:57555252-57555271 | None:intergenic | 35.0% | |
| AACCATTGGCCAATTTAAGT+TGG | + | chr5_1:57555339-57555358 | Msa0739380:CDS | 35.0% | |
| ! | ACCATTGGCCAATTTAAGTT+GGG | + | chr5_1:57555340-57555359 | Msa0739380:CDS | 35.0% |
| TCTCTGCAATAATGAACTGA+AGG | - | chr5_1:57555543-57555562 | None:intergenic | 35.0% | |
| ! | ACAGAAAGTTTAGGTGGATT+CGG | - | chr5_1:57555820-57555839 | None:intergenic | 35.0% |
| TTGGTTACAGAAAGTTTAGG+TGG | - | chr5_1:57555826-57555845 | None:intergenic | 35.0% | |
| CCCTAAAGCAACAACTAAAA+TGG | + | chr5_1:57555889-57555908 | Msa0739380:intron | 35.0% | |
| CAACAACTAAAATGGAATGG+AGG | + | chr5_1:57555897-57555916 | Msa0739380:intron | 35.0% | |
| ! | TGATCTAGGTCTATGGTTTT+AGG | + | chr5_1:57555966-57555985 | Msa0739380:intron | 35.0% |
| CTTTAGTATTTCCTCTCCAT+AGG | + | chr5_1:57555992-57556011 | Msa0739380:intron | 35.0% | |
| !! | CTCAGATTGATGATGTATCA+AGG | - | chr5_1:57556021-57556040 | None:intergenic | 35.0% |
| ! | TGCAATCAAAAGTAACGGAA+TGG | - | chr5_1:57556057-57556076 | None:intergenic | 35.0% |
| TGTCTTCTTAATGGTTGTGA+AGG | + | chr5_1:57556184-57556203 | Msa0739380:intron | 35.0% | |
| GTTTGTATGCAGTAAACTGA+TGG | - | chr5_1:57556289-57556308 | None:intergenic | 35.0% | |
| TTTACTGCATACAAACACGA+GGG | + | chr5_1:57556293-57556312 | Msa0739380:CDS | 35.0% | |
| AAAACTTGGGTTCACATCAT+AGG | - | chr5_1:57556369-57556388 | None:intergenic | 35.0% | |
| ACTTATTGATGGAGAGGTTA+AGG | + | chr5_1:57556436-57556455 | Msa0739380:CDS | 35.0% | |
| ACAGAAATGTTCAAAGAGCA+GGG | - | chr5_1:57556499-57556518 | None:intergenic | 35.0% | |
| TTCCTCCTTCAAAGTTCATA+CGG | + | chr5_1:57556568-57556587 | Msa0739380:three_prime_UTR | 35.0% | |
| AACATCCGTATGAACTTTGA+AGG | - | chr5_1:57556576-57556595 | None:intergenic | 35.0% | |
| CATGTATTTGGCAATATCCT+AGG | + | chr5_1:57556619-57556638 | Msa0739380:three_prime_UTR | 35.0% | |
| ATCACATTCACTGGTAAAAG+GGG | - | chr5_1:57556705-57556724 | None:intergenic | 35.0% | |
| CAATCACATTCACTGGTAAA+AGG | - | chr5_1:57556707-57556726 | None:intergenic | 35.0% | |
| ! | CTTTTACCAGTGAATGTGAT+TGG | + | chr5_1:57556705-57556724 | Msa0739380:three_prime_UTR | 35.0% |
| ! | TTAGTGAAGTTGATCTGACG+TGG | + | chr5_1:57552413-57552432 | Msa0739380:five_prime_UTR | 40.0% |
| ! | AAGTTGATCTGACGTGGAAT+TGG | + | chr5_1:57552419-57552438 | Msa0739380:five_prime_UTR | 40.0% |
| AGAGAACCTTTGTAAATGGC+GGG | - | chr5_1:57552569-57552588 | None:intergenic | 40.0% | |
| GAGAGAACCTTTGTAAATGG+CGG | - | chr5_1:57552570-57552589 | None:intergenic | 40.0% | |
| TAGTTGACTAATACTCCCTC+CGG | + | chr5_1:57553016-57553035 | Msa0739380:intron | 40.0% | |
| TTTCCCGCATCACTATATGT+GGG | - | chr5_1:57553198-57553217 | None:intergenic | 40.0% | |
| GAATGGAGGATATGTAAGAG+AGG | + | chr5_1:57553288-57553307 | Msa0739380:intron | 40.0% | |
| ATGTTGTGTCTTGATCTCGT+TGG | + | chr5_1:57553349-57553368 | Msa0739380:intron | 40.0% | |
| TTTATGGATGGAGATTGGAG+AGG | + | chr5_1:57553451-57553470 | Msa0739380:intron | 40.0% | |
| GTAATCTTCTTAGGCCTTAG+CGG | + | chr5_1:57553528-57553547 | Msa0739380:intron | 40.0% | |
| TTATTACCATAAGGCCGCTA+AGG | - | chr5_1:57553545-57553564 | None:intergenic | 40.0% | |
| ! | AGATAATGGCTAGTCCAAAC+TGG | + | chr5_1:57553564-57553583 | Msa0739380:intron | 40.0% |
| CTTCCTACAAATGTCCAACA+AGG | - | chr5_1:57553593-57553612 | None:intergenic | 40.0% | |
| TTGGACATTTGTAGGAAGAC+TGG | + | chr5_1:57553595-57553614 | Msa0739380:intron | 40.0% | |
| ! | TCTTATCCTTGGTTCTCGTA+TGG | + | chr5_1:57553692-57553711 | Msa0739380:intron | 40.0% |
| GCTTATCCACTATAAGCTAG+CGG | - | chr5_1:57553738-57553757 | None:intergenic | 40.0% | |
| !! | ACACTAGTTCAAGTTGCATC+TGG | - | chr5_1:57553849-57553868 | None:intergenic | 40.0% |
| GGGAAATACTTTGTATGTGC+AGG | + | chr5_1:57554080-57554099 | Msa0739380:intron | 40.0% | |
| TTGATTATTGAGGATGGTGC+TGG | + | chr5_1:57554126-57554145 | Msa0739380:exon | 40.0% | |
| GGATATGCATATACCCCATA+GGG | + | chr5_1:57554162-57554181 | Msa0739380:CDS | 40.0% | |
| AGCATGGATTTGAACTTTGC+AGG | - | chr5_1:57554199-57554218 | None:intergenic | 40.0% | |
| ATCCAGCACATCATTTGTAC+TGG | + | chr5_1:57554232-57554251 | Msa0739380:CDS | 40.0% | |
| TTCCAGTACAAATGATGTGC+TGG | - | chr5_1:57554237-57554256 | None:intergenic | 40.0% | |
| TATGAGAGGACAATTGACAG+GGG | + | chr5_1:57554363-57554382 | Msa0739380:intron | 40.0% | |
| GGATTGACCATATGAATCCA+AGG | + | chr5_1:57554419-57554438 | Msa0739380:intron | 40.0% | |
| GATAAGCACTAAGATGTCCT+TGG | - | chr5_1:57554439-57554458 | None:intergenic | 40.0% | |
| CTAGTAAAATTGGGTAACCC+TGG | + | chr5_1:57554689-57554708 | Msa0739380:intron | 40.0% | |
| !! | ACTTTCCATAAGAGTACCCA+GGG | - | chr5_1:57554709-57554728 | None:intergenic | 40.0% |
| !! | AACTTTCCATAAGAGTACCC+AGG | - | chr5_1:57554710-57554729 | None:intergenic | 40.0% |
| !!! | AAGCCATTTTGGAGCTTGAT+AGG | + | chr5_1:57554756-57554775 | Msa0739380:intron | 40.0% |
| !!! | AGCCATTTTGGAGCTTGATA+GGG | + | chr5_1:57554757-57554776 | Msa0739380:intron | 40.0% |
| AACCCTATCAAGCTCCAAAA+TGG | - | chr5_1:57554762-57554781 | None:intergenic | 40.0% | |
| ACTTTCTTGTATCTCAAGGG+AGG | - | chr5_1:57554935-57554954 | None:intergenic | 40.0% | |
| AGTAGTACCCATGCTAACAA+AGG | - | chr5_1:57554994-57555013 | None:intergenic | 40.0% | |
| TCCCAACTTAAATTGGCCAA+TGG | - | chr5_1:57555344-57555363 | None:intergenic | 40.0% | |
| AAAATCACACCTGATGACCA+TGG | - | chr5_1:57555372-57555391 | None:intergenic | 40.0% | |
| CAACAAAAGCCAACACACAT+TGG | + | chr5_1:57555640-57555659 | Msa0739380:intron | 40.0% | |
| TACCTCTGTAAGTGTCCTTT+GGG | + | chr5_1:57555758-57555777 | Msa0739380:intron | 40.0% | |
| ACCTTAGGGTTTCATGATCT+AGG | + | chr5_1:57555952-57555971 | Msa0739380:intron | 40.0% | |
| ACCTAGATCATGAAACCCTA+AGG | - | chr5_1:57555956-57555975 | None:intergenic | 40.0% | |
| GGTTTCATGATCTAGGTCTA+TGG | + | chr5_1:57555959-57555978 | Msa0739380:intron | 40.0% | |
| TGATGTATCAAGGCAACCTA+TGG | - | chr5_1:57556011-57556030 | None:intergenic | 40.0% | |
| TGGTTGTGAAGGTTATTCCA+TGG | + | chr5_1:57556195-57556214 | Msa0739380:intron | 40.0% | |
| GGTTGTGAAGGTTATTCCAT+GGG | + | chr5_1:57556196-57556215 | Msa0739380:intron | 40.0% | |
| GTTGTGAAGGTTATTCCATG+GGG | + | chr5_1:57556197-57556216 | Msa0739380:intron | 40.0% | |
| GTTTACTGCATACAAACACG+AGG | + | chr5_1:57556292-57556311 | Msa0739380:CDS | 40.0% | |
| ATAAATCCAGGTTCTGCATC+TGG | + | chr5_1:57556326-57556345 | Msa0739380:CDS | 40.0% | |
| TGTCCATGAGCACAAAACTT+GGG | - | chr5_1:57556382-57556401 | None:intergenic | 40.0% | |
| ATGTCCATGAGCACAAAACT+TGG | - | chr5_1:57556383-57556402 | None:intergenic | 40.0% | |
| GACAGAAATGTTCAAAGAGC+AGG | - | chr5_1:57556500-57556519 | None:intergenic | 40.0% | |
| ! | ATCCGTATGAACTTTGAAGG+AGG | - | chr5_1:57556573-57556592 | None:intergenic | 40.0% |
| TCTAGACCAATCACATTCAC+TGG | - | chr5_1:57556714-57556733 | None:intergenic | 40.0% | |
| AATCAAAACCAAACACCGGG+AGG | - | chr5_1:57552454-57552473 | None:intergenic | 45.0% | |
| AGAGAGAGTGAGAGAGAGTT+GGG | - | chr5_1:57552511-57552530 | None:intergenic | 45.0% | |
| GAGAACCTTTGTAAATGGCG+GGG | - | chr5_1:57552568-57552587 | None:intergenic | 45.0% | |
| !! | GGTGTCGACGTATTATTGTC+CGG | + | chr5_1:57552984-57553003 | Msa0739380:intron | 45.0% |
| TCGTCCCACATATAGTGATG+CGG | + | chr5_1:57553191-57553210 | Msa0739380:intron | 45.0% | |
| GTTTCCCGCATCACTATATG+TGG | - | chr5_1:57553199-57553218 | None:intergenic | 45.0% | |
| TGATGCGGGAAACTCACAAT+TGG | + | chr5_1:57553206-57553225 | Msa0739380:intron | 45.0% | |
| GATGCGGGAAACTCACAATT+GGG | + | chr5_1:57553207-57553226 | Msa0739380:intron | 45.0% | |
| ATGCGGGAAACTCACAATTG+GGG | + | chr5_1:57553208-57553227 | Msa0739380:intron | 45.0% | |
| TGGAGGATATGTAAGAGAGG+TGG | + | chr5_1:57553291-57553310 | Msa0739380:intron | 45.0% | |
| ACATCATGTTTGACGAGACC+GGG | - | chr5_1:57553411-57553430 | None:intergenic | 45.0% | |
| CACATCATGTTTGACGAGAC+CGG | - | chr5_1:57553412-57553431 | None:intergenic | 45.0% | |
| ! | GTCCAAACTGGTTTCCTTGT+TGG | + | chr5_1:57553576-57553595 | Msa0739380:intron | 45.0% |
| GTCCAACAAGGAAACCAGTT+TGG | - | chr5_1:57553581-57553600 | None:intergenic | 45.0% | |
| ! | GCTAAACCGCTAGCTTATAG+TGG | + | chr5_1:57553729-57553748 | Msa0739380:intron | 45.0% |
| GGGTATATGCATATCCCCTA+GGG | - | chr5_1:57554158-57554177 | None:intergenic | 45.0% | |
| GGGATATGCATATACCCCAT+AGG | + | chr5_1:57554161-57554180 | Msa0739380:CDS | 45.0% | |
| TTCAAATCCATGCTTGTCCC+TGG | + | chr5_1:57554205-57554224 | Msa0739380:CDS | 45.0% | |
| ATAACAGCTCCTGTGATCAG+TGG | + | chr5_1:57554731-57554750 | Msa0739380:intron | 45.0% | |
| ! | GATCAGTGGTGAAGCCATTT+TGG | + | chr5_1:57554745-57554764 | Msa0739380:intron | 45.0% |
| GGCATGTTAGACAAACCAAG+GGG | - | chr5_1:57554785-57554804 | None:intergenic | 45.0% | |
| CGGCATGTTAGACAAACCAA+GGG | - | chr5_1:57554786-57554805 | None:intergenic | 45.0% | |
| ACGGCATGTTAGACAAACCA+AGG | - | chr5_1:57554787-57554806 | None:intergenic | 45.0% | |
| !! | CCCTTTCAGAATAGTGGGTA+CGG | - | chr5_1:57554806-57554825 | None:intergenic | 45.0% |
| ! | CCGTACCCACTATTCTGAAA+GGG | + | chr5_1:57554803-57554822 | Msa0739380:intron | 45.0% |
| ACACGCCCTTTCAGAATAGT+GGG | - | chr5_1:57554811-57554830 | None:intergenic | 45.0% | |
| AACACGCCCTTTCAGAATAG+TGG | - | chr5_1:57554812-57554831 | None:intergenic | 45.0% | |
| TTCTTGTATCTCAAGGGAGG+TGG | - | chr5_1:57554932-57554951 | None:intergenic | 45.0% | |
| TGTCCTGCCTTTGTTAGCAT+GGG | + | chr5_1:57554984-57555003 | Msa0739380:intron | 45.0% | |
| GGTCAGGACAAAGAGTCTTT+AGG | - | chr5_1:57555261-57555280 | None:intergenic | 45.0% | |
| ACTCACCACGAGTTATATGC+AGG | - | chr5_1:57555282-57555301 | None:intergenic | 45.0% | |
| ATGGTTAGTGTCTTGGTCTC+TGG | - | chr5_1:57555325-57555344 | None:intergenic | 45.0% | |
| GAGACCAAGACACTAACCAT+TGG | + | chr5_1:57555325-57555344 | Msa0739380:CDS | 45.0% | |
| TTGGCCAATGGTTAGTGTCT+TGG | - | chr5_1:57555332-57555351 | None:intergenic | 45.0% | |
| GGCACAGTCCCAACTTAAAT+TGG | - | chr5_1:57555351-57555370 | None:intergenic | 45.0% | |
| !! | TTTAAGTTGGGACTGTGCCA+TGG | + | chr5_1:57555352-57555371 | Msa0739380:CDS | 45.0% |
| !! | ACACATTGGCTCAGTTGGTA+AGG | + | chr5_1:57555654-57555673 | Msa0739380:intron | 45.0% |
| !! | TTGGCTCAGTTGGTAAGGAA+CGG | + | chr5_1:57555659-57555678 | Msa0739380:intron | 45.0% |
| TCGAACACACAACCTTCTGA+GGG | - | chr5_1:57555693-57555712 | None:intergenic | 45.0% | |
| ATCGAACACACAACCTTCTG+AGG | - | chr5_1:57555694-57555713 | None:intergenic | 45.0% | |
| GTACCTCTGTAAGTGTCCTT+TGG | + | chr5_1:57555757-57555776 | Msa0739380:intron | 45.0% | |
| !! | AATGGAGGGAGTACCAGTTT+AGG | + | chr5_1:57555912-57555931 | Msa0739380:intron | 45.0% |
| GTGCAGAGGAAAACCTAAAC+TGG | - | chr5_1:57555928-57555947 | None:intergenic | 45.0% | |
| TTCCTCTGCACTTTCACCTT+AGG | + | chr5_1:57555937-57555956 | Msa0739380:intron | 45.0% | |
| TCCTCTGCACTTTCACCTTA+GGG | + | chr5_1:57555938-57555957 | Msa0739380:intron | 45.0% | |
| TATCAAGGCAACCTATGGAG+AGG | - | chr5_1:57556006-57556025 | None:intergenic | 45.0% | |
| GGTGGTGTGGTTATAAATCC+AGG | + | chr5_1:57556314-57556333 | Msa0739380:CDS | 45.0% | |
| ATCATAGGTCATGCTGCTGT+AGG | - | chr5_1:57556354-57556373 | None:intergenic | 45.0% | |
| !! | GAACCCAAGTTTTGTGCTCA+TGG | + | chr5_1:57556376-57556395 | Msa0739380:CDS | 45.0% |
| AGAGAGTGAGAGAGAGTTGG+GGG | - | chr5_1:57552509-57552528 | None:intergenic | 50.0% | |
| GAGAGAGTGAGAGAGAGTTG+GGG | - | chr5_1:57552510-57552529 | None:intergenic | 50.0% | |
| GAGAGAGAGTGAGAGAGAGT+TGG | - | chr5_1:57552512-57552531 | None:intergenic | 50.0% | |
| TCTCTCCCCGCCATTTACAA+AGG | + | chr5_1:57552560-57552579 | Msa0739380:intron | 50.0% | |
| CGTCCCACATATAGTGATGC+GGG | + | chr5_1:57553192-57553211 | Msa0739380:intron | 50.0% | |
| TGCGGGAAACTCACAATTGG+GGG | + | chr5_1:57553209-57553228 | Msa0739380:intron | 50.0% | |
| CACAATTGGGGGGAGATTGT+TGG | + | chr5_1:57553220-57553239 | Msa0739380:intron | 50.0% | |
| ATCATGTTTGACGAGACCGG+GGG | - | chr5_1:57553409-57553428 | None:intergenic | 50.0% | |
| CATCATGTTTGACGAGACCG+GGG | - | chr5_1:57553410-57553429 | None:intergenic | 50.0% | |
| TGGATGGAGATTGGAGAGGA+AGG | + | chr5_1:57553455-57553474 | Msa0739380:intron | 50.0% | |
| ACAGAGCCATACGAGAACCA+AGG | - | chr5_1:57553701-57553720 | None:intergenic | 50.0% | |
| ! | GGTTCTCGTATGGCTCTGTT+TGG | + | chr5_1:57553702-57553721 | Msa0739380:intron | 50.0% |
| ! | TCGTATGGCTCTGTTTGGCA+AGG | + | chr5_1:57553707-57553726 | Msa0739380:intron | 50.0% |
| !! | ATTGAGGATGGTGCTGGTCT+TGG | + | chr5_1:57554132-57554151 | Msa0739380:exon | 50.0% |
| GGGGTATATGCATATCCCCT+AGG | - | chr5_1:57554159-57554178 | None:intergenic | 50.0% | |
| AGGAATATCAGGCGCCCTAT+GGG | - | chr5_1:57554179-57554198 | None:intergenic | 50.0% | |
| TGATGTGCTGGATCTTGCCA+GGG | - | chr5_1:57554225-57554244 | None:intergenic | 50.0% | |
| ATGATGTGCTGGATCTTGCC+AGG | - | chr5_1:57554226-57554245 | None:intergenic | 50.0% | |
| ! | TGACAGGGGTATGTGTGCAA+TGG | + | chr5_1:57554377-57554396 | Msa0739380:intron | 50.0% |
| GGTAACCCTGGGTACTCTTA+TGG | + | chr5_1:57554701-57554720 | Msa0739380:intron | 50.0% | |
| ATGGCTTCACCACTGATCAC+AGG | - | chr5_1:57554743-57554762 | None:intergenic | 50.0% | |
| GCCGTACCCACTATTCTGAA+AGG | + | chr5_1:57554802-57554821 | Msa0739380:intron | 50.0% | |
| CTGTCCTGCCTTTGTTAGCA+TGG | + | chr5_1:57554983-57555002 | Msa0739380:intron | 50.0% | |
| GTACCCATGCTAACAAAGGC+AGG | - | chr5_1:57554990-57555009 | None:intergenic | 50.0% | |
| CCACGAGTTATATGCAGGTC+AGG | - | chr5_1:57555277-57555296 | None:intergenic | 50.0% | |
| CCTGACCTGCATATAACTCG+TGG | + | chr5_1:57555274-57555293 | Msa0739380:CDS | 50.0% | |
| CCAACTGAGCCAATGTGTGT+TGG | - | chr5_1:57555652-57555671 | None:intergenic | 50.0% | |
| !! | CCAACACACATTGGCTCAGT+TGG | + | chr5_1:57555649-57555668 | Msa0739380:intron | 50.0% |
| !! | TGGCTCAGTTGGTAAGGAAC+GGG | + | chr5_1:57555660-57555679 | Msa0739380:intron | 50.0% |
| CGAACACACAACCTTCTGAG+GGG | - | chr5_1:57555692-57555711 | None:intergenic | 50.0% | |
| ! | AGTTTAGGTGGATTCGGCTC+CGG | - | chr5_1:57555814-57555833 | None:intergenic | 50.0% |
| ! | ACCCTAAGGTGAAAGTGCAG+AGG | - | chr5_1:57555942-57555961 | None:intergenic | 50.0% |
| GACGTAGACATCCTTGTCAC+AGG | + | chr5_1:57556257-57556276 | Msa0739380:CDS | 50.0% | |
| ACTGCATACAAACACGAGGG+TGG | + | chr5_1:57556296-57556315 | Msa0739380:CDS | 50.0% | |
| ATACAAACACGAGGGTGGTG+TGG | + | chr5_1:57556301-57556320 | Msa0739380:CDS | 50.0% | |
| ! | ATCACATGTGTCGGTGCGTG+TGG | - | chr5_1:57552939-57552958 | None:intergenic | 55.0% |
| GCGGGAAACTCACAATTGGG+GGG | + | chr5_1:57553210-57553229 | Msa0739380:intron | 55.0% | |
| TGATGGTCATGATGCTCCCC+CGG | + | chr5_1:57553390-57553409 | Msa0739380:intron | 55.0% | |
| CTTAGGCCTTAGCGGCCTTA+TGG | + | chr5_1:57553536-57553555 | Msa0739380:intron | 55.0% | |
| GGAATATCAGGCGCCCTATG+GGG | - | chr5_1:57554178-57554197 | None:intergenic | 55.0% | |
| CAGGAATATCAGGCGCCCTA+TGG | - | chr5_1:57554180-57554199 | None:intergenic | 55.0% | |
| GATCTTGCCAGGGACAAGCA+TGG | - | chr5_1:57554215-57554234 | None:intergenic | 55.0% | |
| GAGCTTGATAGGGTTCCCCT+TGG | + | chr5_1:57554767-57554786 | Msa0739380:intron | 55.0% | |
| ! | CACAACCTTCTGAGGGGAAG+TGG | - | chr5_1:57555686-57555705 | None:intergenic | 55.0% |
| GGCCCAAAGGACACTTACAG+AGG | - | chr5_1:57555763-57555782 | None:intergenic | 55.0% | |
| CTGTAAGTGTCCTTTGGGCC+CGG | + | chr5_1:57555763-57555782 | Msa0739380:intron | 55.0% | |
| AGTGAGTCTAGGTCTCCCCA+TGG | - | chr5_1:57556215-57556234 | None:intergenic | 55.0% | |
| ATGGGGAGACCTAGACTCAC+TGG | + | chr5_1:57556214-57556233 | Msa0739380:CDS | 55.0% | |
| GTAGCATCGCCAGTGAGTCT+AGG | - | chr5_1:57556226-57556245 | None:intergenic | 55.0% | |
| GATGGGTGTGACCTGTGACA+AGG | - | chr5_1:57556271-57556290 | None:intergenic | 55.0% | |
| TAGGCACCAGATGCAGAACC+TGG | - | chr5_1:57556335-57556354 | None:intergenic | 55.0% | |
| !! | AATTGGTGCCGCTCTCCTCC+CGG | + | chr5_1:57552436-57552455 | Msa0739380:five_prime_UTR | 60.0% |
| ACCAAACACCGGGAGGAGAG+CGG | - | chr5_1:57552447-57552466 | None:intergenic | 60.0% | |
| TCTACCGCCCACCTTCCGAT+CGG | + | chr5_1:57552473-57552492 | Msa0739380:five_prime_UTR | 60.0% | |
| CACTCGACCGATCGGAAGGT+GGG | - | chr5_1:57552483-57552502 | None:intergenic | 60.0% | |
| TCACTCGACCGATCGGAAGG+TGG | - | chr5_1:57552484-57552503 | None:intergenic | 60.0% | |
| GAGTCACTCGACCGATCGGA+AGG | - | chr5_1:57552487-57552506 | None:intergenic | 60.0% | |
| !! | ATGGTGCTGGTCTTGGCCCT+AGG | + | chr5_1:57554139-57554158 | Msa0739380:CDS | 60.0% |
| !! | TGGTGCTGGTCTTGGCCCTA+GGG | + | chr5_1:57554140-57554159 | Msa0739380:CDS | 60.0% |
| GGGACTGTGCCATGGTCATC+AGG | + | chr5_1:57555360-57555379 | Msa0739380:CDS | 60.0% | |
| GATTCCCGCTGCCGATGTGA+GGG | + | chr5_1:57555711-57555730 | Msa0739380:intron | 60.0% | |
| CACCAACACCGCCCTCACAT+CGG | - | chr5_1:57555725-57555744 | None:intergenic | 60.0% | |
| !! | GATGTGAGGGCGGTGTTGGT+GGG | + | chr5_1:57555724-57555743 | Msa0739380:intron | 60.0% |
| TAAGTGTCCTTTGGGCCCGG+AGG | + | chr5_1:57555766-57555785 | Msa0739380:intron | 60.0% | |
| CATCGATGCTCTGCGTGTCG+TGG | + | chr5_1:57556400-57556419 | Msa0739380:CDS | 60.0% | |
| TCGACCGATCGGAAGGTGGG+CGG | - | chr5_1:57552480-57552499 | None:intergenic | 65.0% | |
| GGGGGAGTCACTCGACCGAT+CGG | - | chr5_1:57552491-57552510 | None:intergenic | 65.0% | |
| !! | GGTGCTGGTCTTGGCCCTAG+GGG | + | chr5_1:57554141-57554160 | Msa0739380:CDS | 65.0% |
| ACGGGCCACTTCCCCTCAGA+AGG | + | chr5_1:57555678-57555697 | Msa0739380:intron | 65.0% | |
| CGATTCCCGCTGCCGATGTG+AGG | + | chr5_1:57555710-57555729 | Msa0739380:intron | 65.0% | |
| TGCCGATGTGAGGGCGGTGT+TGG | + | chr5_1:57555720-57555739 | Msa0739380:intron | 65.0% | |
| ! | CGATGTGAGGGCGGTGTTGG+TGG | + | chr5_1:57555723-57555742 | Msa0739380:intron | 65.0% |
| TCCGGTCACCACCAGGGTCA+GGG | - | chr5_1:57555796-57555815 | None:intergenic | 65.0% | |
| TTCGGCTCCGGTCACCACCA+GGG | - | chr5_1:57555802-57555821 | None:intergenic | 65.0% | |
| ATTCGGCTCCGGTCACCACC+AGG | - | chr5_1:57555803-57555822 | None:intergenic | 65.0% | |
| GCCGCTCTCCTCCCGGTGTT+TGG | + | chr5_1:57552443-57552462 | Msa0739380:five_prime_UTR | 70.0% | |
| TCCCGCTGCCGATGTGAGGG+CGG | + | chr5_1:57555714-57555733 | Msa0739380:intron | 70.0% | |
| ACCGCCCTCACATCGGCAGC+GGG | - | chr5_1:57555718-57555737 | None:intergenic | 70.0% | |
| CACCGCCCTCACATCGGCAG+CGG | - | chr5_1:57555719-57555738 | None:intergenic | 70.0% | |
| GTCACCACCAGGGTCAGGGC+AGG | - | chr5_1:57555792-57555811 | None:intergenic | 70.0% | |
| ! | GCCCTGACCCTGGTGGTGAC+CGG | + | chr5_1:57555792-57555811 | Msa0739380:intron | 70.0% |
| CTCCGGTCACCACCAGGGTC+AGG | - | chr5_1:57555797-57555816 | None:intergenic | 70.0% | |
| CAGGGTCAGGGCAGGCCTCC+GGG | - | chr5_1:57555784-57555803 | None:intergenic | 75.0% | |
| CCAGGGTCAGGGCAGGCCTC+CGG | - | chr5_1:57555785-57555804 | None:intergenic | 75.0% | |
| GAGGCCTGCCCTGACCCTGG+TGG | + | chr5_1:57555785-57555804 | Msa0739380:intron | 75.0% | |
| ! | GGGCAGGCCTCCGGGCCCAA+AGG | - | chr5_1:57555776-57555795 | None:intergenic | 80.0% |
| ! | CCGGAGGCCTGCCCTGACCC+TGG | + | chr5_1:57555782-57555801 | Msa0739380:intron | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 57552388 | 57556833 | 57552388 | ID=Msa0739380;Name=Msa0739380 |
| chr5_1 | mRNA | 57552388 | 57556833 | 57552388 | ID=Msa0739380-mRNA-1;Parent=Msa0739380;Name=Msa0739380-mRNA-1;_AED=0.02;_eAED=0.02;_QI=191|1|1|1|0.5|0.4|5|325|190 |
| chr5_1 | exon | 57552388 | 57552526 | 57552388 | ID=Msa0739380-mRNA-1:exon:16362;Parent=Msa0739380-mRNA-1 |
| chr5_1 | exon | 57552567 | 57552581 | 57552567 | ID=Msa0739380-mRNA-1:exon:16363;Parent=Msa0739380-mRNA-1 |
| chr5_1 | exon | 57554102 | 57554270 | 57554102 | ID=Msa0739380-mRNA-1:exon:16364;Parent=Msa0739380-mRNA-1 |
| chr5_1 | exon | 57555244 | 57555381 | 57555244 | ID=Msa0739380-mRNA-1:exon:16365;Parent=Msa0739380-mRNA-1 |
| chr5_1 | exon | 57556206 | 57556833 | 57556206 | ID=Msa0739380-mRNA-1:exon:16366;Parent=Msa0739380-mRNA-1 |
| chr5_1 | five_prime_UTR | 57552388 | 57552526 | 57552388 | ID=Msa0739380-mRNA-1:five_prime_utr;Parent=Msa0739380-mRNA-1 |
| chr5_1 | five_prime_UTR | 57552567 | 57552581 | 57552567 | ID=Msa0739380-mRNA-1:five_prime_utr;Parent=Msa0739380-mRNA-1 |
| chr5_1 | five_prime_UTR | 57554102 | 57554138 | 57554102 | ID=Msa0739380-mRNA-1:five_prime_utr;Parent=Msa0739380-mRNA-1 |
| chr5_1 | CDS | 57554139 | 57554270 | 57554139 | ID=Msa0739380-mRNA-1:cds;Parent=Msa0739380-mRNA-1 |
| chr5_1 | CDS | 57555244 | 57555381 | 57555244 | ID=Msa0739380-mRNA-1:cds;Parent=Msa0739380-mRNA-1 |
| chr5_1 | CDS | 57556206 | 57556508 | 57556206 | ID=Msa0739380-mRNA-1:cds;Parent=Msa0739380-mRNA-1 |
| chr5_1 | three_prime_UTR | 57556509 | 57556833 | 57556509 | ID=Msa0739380-mRNA-1:three_prime_utr;Parent=Msa0739380-mRNA-1 |
| Gene Sequence |
| Protein sequence |
