AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0860030

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0860030 MtrunA17_Chr5g0439101 100.000 173 0 0 1 173 1 173 5.60e-126 360
Msa0860030 MtrunA17_Chr3g0119621 93.642 173 11 0 1 173 1 173 8.53e-121 347
Msa0860030 MtrunA17_Chr1g0159301 94.161 137 8 0 232 368 19 155 3.18e-84 268
Msa0860030 MtrunA17_Chr3g0129911 38.519 135 73 3 235 368 23 148 1.46e-22 99.4
Msa0860030 MtrunA17_Chr5g0418321 48.148 81 41 1 124 203 83 163 2.25e-14 73.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0860030 AT3G47810.2 89.017 173 19 0 1 173 1 173 1.66e-113 329
Msa0860030 AT3G47810.1 89.017 173 19 0 1 173 1 173 1.66e-113 329
Msa0860030 AT3G47810.3 89.017 173 19 0 1 173 1 173 1.66e-113 329

Find 155 sgRNAs with CRISPR-Local

Find 497 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCCGAATTGGAAAATTATTT+TGG 0.148185 5_4:+58541166 Msa0860030:CDS
TTTCCAGAACATTAGTTATT+TGG 0.170006 5_4:-58541779 None:intergenic
TTTCCTATGGCTGATATTTC+AGG 0.192514 5_4:-58542620 None:intergenic
TTGCACATTTCAACTACTTA+TGG 0.215615 5_4:+58542691 Msa0860030:three_prime_UTR
GGGAAGAAAGCATGCTCATC+TGG 0.253615 5_4:-58540294 None:intergenic
TATGCCTCTGGTTCTGCCTT+TGG 0.255453 5_4:-58542482 None:intergenic
TCTTCTTCATCGATCCATTC+TGG 0.287055 5_4:-58541949 None:intergenic
GGCACAGTCCCAACTTAAAT+TGG 0.289654 5_4:-58538256 None:intergenic
TCCTGATTCTTTGAATTGTA+TGG 0.290849 5_4:-58542457 None:intergenic
TTGTAGACTATATTACTTTC+AGG 0.302619 5_4:+58540439 Msa0860030:CDS
GAACGATAAGGATACATATC+AGG 0.317623 5_4:+58541806 Msa0860030:CDS
TGCAATTTATACTCCTATCT+TGG 0.320523 5_4:-58541142 None:intergenic
AACGCGTGATCTCGTGATTC+TGG 0.330372 5_4:+58542376 Msa0860030:three_prime_UTR
TTGAACTTCGCAGGAATATC+AGG 0.330402 5_4:-58537097 None:intergenic
ATGGTGCTGGTCTTGGCCCT+AGG 0.338873 5_4:+58537049 Msa0860030:CDS
GCCACTCTCCTCCCGGTGTT+TGG 0.341705 5_4:+58535509 Msa0860030:five_prime_UTR
GAACCAAATAACTAATGTTC+TGG 0.345455 5_4:+58541776 Msa0860030:CDS
ATGGTTAGTGTCTTGGTCTC+TGG 0.361354 5_4:-58538230 None:intergenic
TCCATACAATTCAAAGAATC+AGG 0.366674 5_4:+58542456 Msa0860030:three_prime_UTR
GGCGAAGGACTACACGCTTC+TGG 0.368718 5_4:-58541885 None:intergenic
GTATAAATTGCAAGCCGAAT+TGG 0.369269 5_4:+58541153 Msa0860030:CDS
ATTCGGCCATGTATATGATA+TGG 0.369935 5_4:+58542828 Msa0860030:three_prime_UTR
TATTATGTGATGTACTAATT+CGG 0.370244 5_4:+58542811 Msa0860030:three_prime_UTR
CAAAACTTGTGGGTACTTCA+TGG 0.383917 5_4:-58540346 None:intergenic
ATTGAGGATGGTGCTGGTCT+TGG 0.383939 5_4:+58537042 Msa0860030:exon
AGTGGCTCGGGTAAGTTTGC+AGG 0.390847 5_4:-58540315 None:intergenic
AAGTAATATAGTCTACAAAA+AGG 0.394847 5_4:-58540434 None:intergenic
GGCCTACATTTGTAAACAAC+TGG 0.398626 5_4:+58541697 Msa0860030:intron
TCTGGAAAATTTGAACGATA+AGG 0.411011 5_4:+58541794 Msa0860030:CDS
AGGAGTGGCTTGGCAGCAGC+TGG 0.412642 5_4:+58542425 Msa0860030:three_prime_UTR
CACATATTCCATTCCAAGAT+AGG 0.413633 5_4:+58541129 Msa0860030:CDS
CAGGAATATCAGGCGCCCTA+TGG 0.417399 5_4:-58537087 None:intergenic
TGGTGCTGGTCTTGGCCCTA+GGG 0.418770 5_4:+58537050 Msa0860030:CDS
ATATTTCAGGCATCTCAAAA+AGG 0.428904 5_4:-58542607 None:intergenic
ATAAATCCAGGTTCTGCATC+TGG 0.431341 5_4:+58539023 Msa0860030:CDS
TTCCACTCGTTATATGCCTC+TGG 0.432909 5_4:-58542494 None:intergenic
AACCATTGGCCAATTTAAGT+TGG 0.436265 5_4:+58538247 Msa0860030:CDS
GGGACTGTGCCATGGTCATC+AGG 0.438213 5_4:+58538268 Msa0860030:CDS
ACCATTGGCCAATTTAAGTT+GGG 0.440426 5_4:+58538248 Msa0860030:CDS
TATGTATATGAACTTATTGA+TGG 0.449262 5_4:+58539122 Msa0860030:CDS
GGATTGTTGCATAAGCTTCT+CGG 0.451047 5_4:-58542286 None:intergenic
AGGAATATCAGGCGCCCTAT+GGG 0.453264 5_4:-58537086 None:intergenic
CATCATTTCTAAATATTGAC+TGG 0.458062 5_4:+58541754 Msa0860030:CDS
GCTCAAAGTATTCGAATGTC+TGG 0.458305 5_4:+58542350 Msa0860030:three_prime_UTR
TTGATTATTGAGGATGGTGC+TGG 0.461159 5_4:+58537036 Msa0860030:exon
TTCCAGTTGTTTACAAATGT+AGG 0.461376 5_4:-58541699 None:intergenic
TTGGCCAATGGTTAGTGTCT+TGG 0.466580 5_4:-58538237 None:intergenic
ATGTCCATGAGCACAAAACT+TGG 0.470525 5_4:-58539077 None:intergenic
AAAACTTGGGTTCACATCAT+AGG 0.472151 5_4:-58539063 None:intergenic
ATGGGGAGACCTGGACTCGC+TGG 0.479473 5_4:+58538911 Msa0860030:CDS
ATCCAGCACATCATTTGTAC+TGG 0.480280 5_4:+58537142 Msa0860030:CDS
GTAGCATTGCCAGCGAGTCC+AGG 0.482065 5_4:-58538920 None:intergenic
TGTTACTAGAAGCATAGTTC+AGG 0.483810 5_4:-58541906 None:intergenic
GATAAAATCTCAAAACTTGT+GGG 0.486420 5_4:-58540356 None:intergenic
TAGGCACCAGATGCAGAACC+TGG 0.486891 5_4:-58539029 None:intergenic
AAATTGATCTGACGTGGAAT+TGG 0.488700 5_4:+58535485 Msa0860030:five_prime_UTR
CGTATATATGTGCAGAGTGC+AGG 0.489253 5_4:-58542307 None:intergenic
CATTTGTAAACAACTGGAAA+GGG 0.493969 5_4:+58541703 Msa0860030:CDS
GGTTATTCCATGGGGAGACC+TGG 0.494566 5_4:+58538902 Msa0860030:intron
TTCCAGTACAAATGATGTGC+TGG 0.495301 5_4:-58537144 None:intergenic
CCACGAGTTATATGCAGGTC+AGG 0.501875 5_4:-58538182 None:intergenic
ATGATGTGCTGGATCTTGCC+AGG 0.502900 5_4:-58537133 None:intergenic
AATTGGTGCCACTCTCCTCC+CGG 0.504515 5_4:+58535502 Msa0860030:five_prime_UTR
TGGTTGTGAAGGTTATTCCA+TGG 0.504565 5_4:+58538892 Msa0860030:intron
TTCAAATCCATGCTTGTCCC+TGG 0.504766 5_4:+58537115 Msa0860030:CDS
CAGTGTAGCATTGTTTCCTA+TGG 0.507446 5_4:-58542633 None:intergenic
ATGGGAGGAAGCAGTGGCTC+GGG 0.507604 5_4:-58540327 None:intergenic
GGGGTATGTGCATATCCCCT+AGG 0.510010 5_4:-58537066 None:intergenic
TTTATACTCCTATCTTGGAA+TGG 0.510475 5_4:-58541137 None:intergenic
AGCATGGATTTGAACTTCGC+AGG 0.510899 5_4:-58537106 None:intergenic
ACTGTTCAACTCAGGTGTAA+TGG 0.513305 5_4:+58542652 Msa0860030:three_prime_UTR
ATTTACTCATATCATTTACA+TGG 0.515511 5_4:-58542890 None:intergenic
ACTACAACAAATTTCGTCTC+TGG 0.516130 5_4:+58542516 Msa0860030:three_prime_UTR
AGATAAAATCTCAAAACTTG+TGG 0.516386 5_4:-58540357 None:intergenic
GGTTGTGAAGGTTATTCCAT+GGG 0.518450 5_4:+58538893 Msa0860030:intron
TCTGCACATATATACGTTTG+TGG 0.519081 5_4:+58542314 Msa0860030:three_prime_UTR
GGAAGAAAGCATGCTCATCT+GGG 0.522153 5_4:-58540293 None:intergenic
CATGGGAGGAAGCAGTGGCT+CGG 0.533871 5_4:-58540328 None:intergenic
GTGGCTTGGCAGCAGCTGGA+TGG 0.534926 5_4:+58542429 Msa0860030:three_prime_UTR
TGATTCTTCTGAGCTTGACT+CGG 0.541288 5_4:-58542750 None:intergenic
GGTGGTGTGGTTATAAATCC+AGG 0.541473 5_4:+58539011 Msa0860030:CDS
AAGGATACATATCAGGGTGT+TGG 0.546499 5_4:+58541813 Msa0860030:CDS
TGATTATCACAGGAGTGGCT+TGG 0.547142 5_4:+58542415 Msa0860030:three_prime_UTR
TATTATAAACAGCTGGAGGA+TGG 0.550310 5_4:-58541223 None:intergenic
TGATCAGTATTATAAACAGC+TGG 0.552101 5_4:-58541230 None:intergenic
ACATTTGTAAACAACTGGAA+AGG 0.552242 5_4:+58541702 Msa0860030:CDS
AAAACTTGTGGGTACTTCAT+GGG 0.552619 5_4:-58540345 None:intergenic
CAATATTTCTGAGTATAAGA+AGG 0.556543 5_4:-58542580 None:intergenic
TACTTCATGGGAGGAAGCAG+TGG 0.556908 5_4:-58540333 None:intergenic
AAACAATAAGTGATTATCAC+AGG 0.557166 5_4:+58542405 Msa0860030:three_prime_UTR
AAAGAGTCTTTAGATAGTCA+TGG 0.562580 5_4:-58538157 None:intergenic
GGGATATGCACATACCCCAT+AGG 0.564723 5_4:+58537071 Msa0860030:CDS
AATACTTTGAGCTGCAGTGA+TGG 0.567022 5_4:-58542339 None:intergenic
GTTTGTATGCAGTAAACTGA+TGG 0.568023 5_4:-58538983 None:intergenic
AGTTGAAATGTGCAATTCGA+TGG 0.571909 5_4:-58542683 None:intergenic
GGGAAGACTTGTATCCAGAA+TGG 0.574018 5_4:+58541935 Msa0860030:three_prime_UTR
GGTGCTGGTCTTGGCCCTAG+GGG 0.574862 5_4:+58537051 Msa0860030:CDS
GGATATGCACATACCCCATA+GGG 0.582283 5_4:+58537072 Msa0860030:CDS
GGGTATGTGCATATCCCCTA+GGG 0.582654 5_4:-58537065 None:intergenic
ATCATAGGTCATGCTGCTGT+AGG 0.582776 5_4:-58539048 None:intergenic
ATGCCTGAAATATCAGCCAT+AGG 0.584336 5_4:+58542617 Msa0860030:three_prime_UTR
AACTGGAAAGGGGAGCTCGA+TGG 0.586611 5_4:+58541714 Msa0860030:CDS
TTTAAGTTGGGACTGTGCCA+TGG 0.588088 5_4:+58538260 Msa0860030:CDS
GACGTAGACATCCTTGTCAC+AGG 0.588413 5_4:+58538954 Msa0860030:CDS
AGCGAGTCCAGGTCTCCCCA+TGG 0.591645 5_4:-58538909 None:intergenic
CTGGTACTAGTTGCTTCCAG+TGG 0.591679 5_4:-58541866 None:intergenic
AGTTAGCCATATCATATACA+TGG 0.591734 5_4:-58542834 None:intergenic
ACCAAACACCGGGAGGAGAG+TGG 0.594288 5_4:-58535510 None:intergenic
CATCGATGCTCTGCGTGTCG+TGG 0.600592 5_4:+58539097 Msa0860030:CDS
TCCCAACTTAAATTGGCCAA+TGG 0.604696 5_4:-58538249 None:intergenic
TCTCATCTCCGCTATTAACA+AGG 0.605678 5_4:+58535594 Msa0860030:five_prime_UTR
ATATGAACTTATTGATGGAG+AGG 0.605775 5_4:+58539127 Msa0860030:CDS
GTGGCTCGGGTAAGTTTGCA+GGG 0.606130 5_4:-58540314 None:intergenic
TGTCCATGAGCACAAAACTT+GGG 0.608818 5_4:-58539076 None:intergenic
TACTCATATCATTTACATGG+TGG 0.610543 5_4:-58542887 None:intergenic
GATCTTGCCAGGGACAAGCA+TGG 0.611475 5_4:-58537122 None:intergenic
ACTCACCACGAGTTATATGC+AGG 0.614802 5_4:-58538187 None:intergenic
ATTTCTGAGTATAAGAAGGT+CGG 0.615587 5_4:-58542576 None:intergenic
ATATATCAAACTTTATATCA+CGG 0.616691 5_4:+58541252 Msa0860030:CDS
ATGCTTCTAGTAACATCACG+TGG 0.616995 5_4:+58541914 Msa0860030:exon
GAGTCACTCTACCGATCGGA+AGG 0.617782 5_4:-58535550 None:intergenic
TCAAAGAATCAGGAATCCAA+AGG 0.624118 5_4:+58542466 Msa0860030:three_prime_UTR
AACGATAAGGATACATATCA+GGG 0.626137 5_4:+58541807 Msa0860030:CDS
TAGAAGCATAGTTCAGGCGA+AGG 0.629094 5_4:-58541900 None:intergenic
AAAATCACACCTGATGACCA+TGG 0.633549 5_4:-58538277 None:intergenic
GAATCCAAAGGCAGAACCAG+AGG 0.633675 5_4:+58542478 Msa0860030:three_prime_UTR
GAGACCAAGACACTAACCAT+TGG 0.634137 5_4:+58538233 Msa0860030:CDS
AGAGAGAACCTTGTTAATAG+CGG 0.634411 5_4:-58535602 None:intergenic
ATTTGTAAACAACTGGAAAG+GGG 0.637003 5_4:+58541704 Msa0860030:CDS
AACCAGAGGCATATAACGAG+TGG 0.637866 5_4:+58542492 Msa0860030:three_prime_UTR
AATGCTACACTGTTCAACTC+AGG 0.645973 5_4:+58542644 Msa0860030:three_prime_UTR
TCTACCGATCGGAAGGTGAG+CGG 0.646796 5_4:-58535543 None:intergenic
GTGAAGATACTACCAAGAGA+AGG 0.651983 5_4:+58541066 Msa0860030:intron
TAGAATCAAAACCAAACACC+GGG 0.652600 5_4:-58535520 None:intergenic
ATACAAACACGAGGGTGGTG+TGG 0.656040 5_4:+58538998 Msa0860030:CDS
TTTGTATGCAGTAAACTGAT+GGG 0.657847 5_4:-58538982 None:intergenic
GTAGAATCAAAACCAAACAC+CGG 0.658578 5_4:-58535521 None:intergenic
TTAGTAAAATTGATCTGACG+TGG 0.658778 5_4:+58535479 None:intergenic
ATAAGTGATTATCACAGGAG+TGG 0.662338 5_4:+58542410 Msa0860030:three_prime_UTR
TGATGTGCTGGATCTTGCCA+GGG 0.662880 5_4:-58537132 None:intergenic
ATGACAGTGAGATTGACCAC+TGG 0.664576 5_4:+58541850 Msa0860030:CDS
TTTAGAAATGATGCATAACG+CGG 0.665706 5_4:-58541744 None:intergenic
TCAGTATTATAAACAGCTGG+AGG 0.666361 5_4:-58541227 None:intergenic
GGAATATCAGGCGCCCTATG+GGG 0.674568 5_4:-58537085 None:intergenic
TCTACCGCTCACCTTCCGAT+CGG 0.674835 5_4:+58535539 Msa0860030:five_prime_UTR
ACTTGTGGGTACTTCATGGG+AGG 0.678299 5_4:-58540342 None:intergenic
GTTGTGAAGGTTATTCCATG+GGG 0.697159 5_4:+58538894 Msa0860030:intron
CCTGACCTGCATATAACTCG+TGG 0.703603 5_4:+58538182 Msa0860030:CDS
ACTGCATACAAACACGAGGG+TGG 0.705173 5_4:+58538993 Msa0860030:CDS
AATCAAAACCAAACACCGGG+AGG 0.706164 5_4:-58535517 None:intergenic
GATGGGTGTGACCTGTGACA+AGG 0.707385 5_4:-58538965 None:intergenic
GTTCAACTCAGGTGTAATGG+TGG 0.709097 5_4:+58542655 Msa0860030:three_prime_UTR
TGCTTCTAGTAACATCACGT+GGG 0.711823 5_4:+58541915 Msa0860030:exon
GTTTACTGCATACAAACACG+AGG 0.718182 5_4:+58538989 Msa0860030:CDS
TTTACTGCATACAAACACGA+GGG 0.754644 5_4:+58538990 Msa0860030:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATGATTTTAAACTTTTGAA+AGG - chr5_4:58535824-58535843 None:intergenic 15.0%
!! TATTAAACAACTAGTAAAAT+TGG + chr5_4:58537560-58537579 Msa0860030:intron 15.0%
!! ATTAAACAACTAGTAAAATT+GGG + chr5_4:58537561-58537580 Msa0860030:intron 15.0%
!! AAAAATTAACAAGAAAAGAA+GGG - chr5_4:58537740-58537759 None:intergenic 15.0%
!! AAAAAATTAACAAGAAAAGA+AGG - chr5_4:58537741-58537760 None:intergenic 15.0%
!!! AGTTTTATATGCATAAAATA+TGG - chr5_4:58537787-58537806 None:intergenic 15.0%
!!! ATATTTTATGCATATAAAAC+TGG + chr5_4:58537786-58537805 Msa0860030:intron 15.0%
!! ACTAAACAAATAAATAGAAA+AGG - chr5_4:58539239-58539258 None:intergenic 15.0%
!!! ATGATTTTAAACATGATTTT+CGG - chr5_4:58539706-58539725 None:intergenic 15.0%
!!! TATTTTGGTTATTATTATCT+TGG + chr5_4:58541181-58541200 Msa0860030:CDS 15.0%
!!! ATTTTGGTTATTATTATCTT+GGG + chr5_4:58541182-58541201 Msa0860030:CDS 15.0%
!! ATATATCAAACTTTATATCA+CGG + chr5_4:58541252-58541271 Msa0860030:CDS 15.0%
!!! ATTAGTTTCATTTCTAAATT+TGG + chr5_4:58541307-58541326 Msa0860030:intron 15.0%
!!! TTATGGATATTTTTATTCTT+TGG + chr5_4:58541668-58541687 Msa0860030:intron 15.0%
!!! TATGGATATTTTTATTCTTT+GGG + chr5_4:58541669-58541688 Msa0860030:intron 15.0%
!!! ATTAATTGAATCTTATTTTC+TGG + chr5_4:58542068-58542087 Msa0860030:intron 15.0%
!! ATACATACAGTATAAAAAAC+AGG - chr5_4:58535668-58535687 None:intergenic 20.0%
!! GGAATTTCAAATTAATTTAG+AGG + chr5_4:58535939-58535958 Msa0860030:intron 20.0%
!! GAATCAAATATTCAATATAC+AGG + chr5_4:58536677-58536696 Msa0860030:intron 20.0%
!!! AATATTCAATATACAGGTTT+TGG + chr5_4:58536683-58536702 Msa0860030:intron 20.0%
!! TAAAGTTCTACAAAATTTAC+TGG + chr5_4:58536942-58536961 Msa0860030:intron 20.0%
!! TTCTAATTCAATATTTGCAA+TGG + chr5_4:58537256-58537275 Msa0860030:intron 20.0%
!! AAAATTAACAAGAAAAGAAG+GGG - chr5_4:58537739-58537758 None:intergenic 20.0%
!!! AACTTCTAAGATAAGTTTTA+TGG + chr5_4:58538116-58538135 Msa0860030:intron 20.0%
!! TAATCGCTAAAATCAAAATA+GGG - chr5_4:58538324-58538343 None:intergenic 20.0%
!!! TTTGATAACGACAAATAAAT+AGG - chr5_4:58538393-58538412 None:intergenic 20.0%
!! TTGAAAGCAACAAAATTTAT+TGG + chr5_4:58538546-58538565 Msa0860030:intron 20.0%
!! TATGTATATGAACTTATTGA+TGG + chr5_4:58539122-58539141 Msa0860030:CDS 20.0%
!!! TGTTTTTCGTTATTATCATA+AGG + chr5_4:58539643-58539662 Msa0860030:intron 20.0%
!!! TTACAAATTTGACATTTTAG+TGG + chr5_4:58539843-58539862 Msa0860030:intron 20.0%
!!! TATTTGAAACTTGAAAATCA+TGG + chr5_4:58539898-58539917 Msa0860030:intron 20.0%
!! TATTCATTAAGGAAAAAGAT+TGG + chr5_4:58539965-58539984 Msa0860030:intron 20.0%
!! AAGTAATATAGTCTACAAAA+AGG - chr5_4:58540437-58540456 None:intergenic 20.0%
!! AATAGCTCTTATATCTAATA+AGG - chr5_4:58540508-58540527 None:intergenic 20.0%
!!! CTATTTTAGAAAGTTTTAGT+TGG + chr5_4:58540523-58540542 Msa0860030:intron 20.0%
!! CAGCATTGTTAATAATAATT+TGG - chr5_4:58540851-58540870 None:intergenic 20.0%
!!! ACCAAAATAATTTTCCAATT+CGG - chr5_4:58541170-58541189 None:intergenic 20.0%
!! AAGAATTGTATTTGTAAGTA+AGG - chr5_4:58541432-58541451 None:intergenic 20.0%
!! AAATCTATTGATATGCTATA+AGG - chr5_4:58542014-58542033 None:intergenic 20.0%
!!! TTTTACAGAAAATTTTCACT+CGG + chr5_4:58542253-58542272 Msa0860030:intron 20.0%
!! TATTATGTGATGTACTAATT+CGG + chr5_4:58542811-58542830 Msa0860030:three_prime_UTR 20.0%
!! ATTTACTCATATCATTTACA+TGG - chr5_4:58542893-58542912 None:intergenic 20.0%
! AGGATAGGAAAAACTAATTA+GGG + chr5_4:58535979-58535998 Msa0860030:intron 25.0%
!!! ACTAATATCATTTTTGTTGC+TGG + chr5_4:58536142-58536161 Msa0860030:intron 25.0%
! AATTGAGGATATATAAGAGA+GGG + chr5_4:58536281-58536300 Msa0860030:intron 25.0%
! TTATCTTCTTAGATTCCTTA+AGG + chr5_4:58536450-58536469 Msa0860030:intron 25.0%
!! TTTGAAGTGTTAGATGAAAT+TGG - chr5_4:58536850-58536869 None:intergenic 25.0%
! CATAGAATATGAACTTATAG+AGG - chr5_4:58536891-58536910 None:intergenic 25.0%
!!! CTTTCAGTTTTTGATTATTG+AGG + chr5_4:58537026-58537045 Msa0860030:five_prime_UTR 25.0%
! AGTAATAGCTATATCGAATA+AGG - chr5_4:58537190-58537209 None:intergenic 25.0%
!! TTTTTCTGTAAAGATCTTGT+AGG + chr5_4:58537383-58537402 Msa0860030:intron 25.0%
! GATAATAGGTGTAATACAAA+GGG - chr5_4:58537971-58537990 None:intergenic 25.0%
! AGATAATAGGTGTAATACAA+AGG - chr5_4:58537972-58537991 None:intergenic 25.0%
!! ATAGTACAATACGTTTGTTA+TGG + chr5_4:58538009-58538028 Msa0860030:intron 25.0%
!! GTTTTATGGCATTTAAATTC+AGG + chr5_4:58538130-58538149 Msa0860030:intron 25.0%
!!! GTGTGATTTTATTTTGACTT+TGG + chr5_4:58538290-58538309 Msa0860030:intron 25.0%
! GTAATCGCTAAAATCAAAAT+AGG - chr5_4:58538325-58538344 None:intergenic 25.0%
!! ACAAAATTTATTGGTTGTCT+TGG + chr5_4:58538555-58538574 Msa0860030:intron 25.0%
! AAAACATCATTAAGGAAGAT+GGG - chr5_4:58538805-58538824 None:intergenic 25.0%
! TGAATACCAAAACATCATTA+AGG - chr5_4:58538813-58538832 None:intergenic 25.0%
!! AAGTTTGAAACACATGTATT+TGG + chr5_4:58539304-58539323 Msa0860030:intron 25.0%
! TCACAAATTTATCAAATCCT+AGG - chr5_4:58539336-58539355 None:intergenic 25.0%
!!! TCAGTCACATAATTTTTTCA+CGG - chr5_4:58539360-58539379 None:intergenic 25.0%
! ACTAATGCTAACATTTAACA+AGG - chr5_4:58539560-58539579 None:intergenic 25.0%
!! TTTTCGTTATTATCATAAGG+TGG + chr5_4:58539646-58539665 Msa0860030:intron 25.0%
! TTATCATAAGGTGGTATTTA+TGG + chr5_4:58539655-58539674 Msa0860030:intron 25.0%
! GATAAAATCTCAAAACTTGT+GGG - chr5_4:58540359-58540378 None:intergenic 25.0%
! AGATAAAATCTCAAAACTTG+TGG - chr5_4:58540360-58540379 None:intergenic 25.0%
! TTGTAGACTATATTACTTTC+AGG + chr5_4:58540439-58540458 Msa0860030:CDS 25.0%
! TAAATCTCAAATTGCTACAA+AGG - chr5_4:58540565-58540584 None:intergenic 25.0%
! TTCTAAACCGTTATATTCTT+GGG - chr5_4:58540759-58540778 None:intergenic 25.0%
! CATTGTTGTCTTAATCATTT+GGG + chr5_4:58540803-58540822 Msa0860030:intron 25.0%
!! TTGATATTTTTCCTCTCTAT+TGG + chr5_4:58541038-58541057 Msa0860030:intron 25.0%
! TAATACAATGATATGAAGCA+AGG - chr5_4:58541291-58541310 None:intergenic 25.0%
! AGAAAGATACATTCTAACAA+GGG - chr5_4:58541409-58541428 None:intergenic 25.0%
! TGTCATTGTATTACAAAGTT+AGG - chr5_4:58541492-58541511 None:intergenic 25.0%
! CTTCTCTTTGTATCTTATTA+TGG + chr5_4:58541651-58541670 Msa0860030:intron 25.0%
! CATCATTTCTAAATATTGAC+TGG + chr5_4:58541754-58541773 Msa0860030:CDS 25.0%
! TTTCCAGAACATTAGTTATT+TGG - chr5_4:58541782-58541801 None:intergenic 25.0%
! TTGATATGCTATAAGGTAAT+CGG - chr5_4:58542007-58542026 None:intergenic 25.0%
!! GAGTGAAAATTTTCTGTAAA+AGG - chr5_4:58542254-58542273 None:intergenic 25.0%
! AAACAATAAGTGATTATCAC+AGG + chr5_4:58542405-58542424 Msa0860030:three_prime_UTR 25.0%
!! CAATATTTCTGAGTATAAGA+AGG - chr5_4:58542583-58542602 None:intergenic 25.0%
GGAATTGAAGAAGTAAGAAA+CGG - chr5_4:58535647-58535666 None:intergenic 30.0%
CAACTTAACATTTCGATGAA+TGG + chr5_4:58535918-58535937 Msa0860030:intron 30.0%
!!! AGGTTTTGAGATTAGTAATG+AGG + chr5_4:58535959-58535978 Msa0860030:intron 30.0%
TTGAGATTAGTAATGAGGAT+AGG + chr5_4:58535964-58535983 Msa0860030:intron 30.0%
GAGGATAGGAAAAACTAATT+AGG + chr5_4:58535978-58535997 Msa0860030:intron 30.0%
GGATAGGAAAAACTAATTAG+GGG + chr5_4:58535980-58535999 Msa0860030:intron 30.0%
TATTAGTCAACTATGATGCA+AGG - chr5_4:58536129-58536148 None:intergenic 30.0%
! ACTATGAATGAGTTGAATTG+AGG + chr5_4:58536266-58536285 Msa0860030:intron 30.0%
GAATTGAGGATATATAAGAG+AGG + chr5_4:58536280-58536299 Msa0860030:intron 30.0%
ATTGAGGATATATAAGAGAG+GGG + chr5_4:58536282-58536301 Msa0860030:intron 30.0%
!! TCTTAAGGCATTGAGAATAT+GGG - chr5_4:58536309-58536328 None:intergenic 30.0%
!! ATCTTAAGGCATTGAGAATA+TGG - chr5_4:58536310-58536329 None:intergenic 30.0%
! TCCTTAAGGTATTCAGATAA+TGG + chr5_4:58536464-58536483 Msa0860030:intron 30.0%
!! TGCTTTGTTAATTAGCTTGT+TGG + chr5_4:58536539-58536558 Msa0860030:intron 30.0%
!! GCTTTGTTAATTAGCTTGTT+GGG + chr5_4:58536540-58536559 Msa0860030:intron 30.0%
!! CTTTGTTAATTAGCTTGTTG+GGG + chr5_4:58536541-58536560 Msa0860030:intron 30.0%
GAAACACACTATAAACTAGT+GGG - chr5_4:58536722-58536741 None:intergenic 30.0%
TGAAACACACTATAAACTAG+TGG - chr5_4:58536723-58536742 None:intergenic 30.0%
! CTTTATTTATTGAAGACGAG+AGG - chr5_4:58536927-58536946 None:intergenic 30.0%
!! TCGCTGTTCTTTTTGTTTAT+AGG + chr5_4:58536970-58536989 Msa0860030:intron 30.0%
!! CAGTTTTTGATTATTGAGGA+TGG + chr5_4:58537030-58537049 Msa0860030:exon 30.0%
! GTCTGAATATTTTACCTCTT+GGG + chr5_4:58537278-58537297 Msa0860030:intron 30.0%
! TCTGAATATTTTACCTCTTG+GGG + chr5_4:58537279-58537298 Msa0860030:intron 30.0%
AAGATGTCCTTTGATTCATA+TGG - chr5_4:58537309-58537328 None:intergenic 30.0%
GTATTAGATCATTTAGCTGT+AGG + chr5_4:58537454-58537473 Msa0860030:intron 30.0%
TAGTAAAATTGGGTAATCCT+GGG + chr5_4:58537571-58537590 Msa0860030:intron 30.0%
AGTAGTTGAATAATGATTGC+AGG + chr5_4:58537860-58537879 Msa0860030:intron 30.0%
CAAAGGGAGTAAATAATACA+TGG - chr5_4:58537955-58537974 None:intergenic 30.0%
GATAGATGCAGAAAGATAAT+AGG - chr5_4:58537985-58538004 None:intergenic 30.0%
CAAATCATCGTATTAGTCAA+TGG - chr5_4:58538073-58538092 None:intergenic 30.0%
AAAGAGTCTTTAGATAGTCA+TGG - chr5_4:58538160-58538179 None:intergenic 30.0%
!! TTTCTGCTCCTTTTTAATTG+TGG + chr5_4:58538347-58538366 Msa0860030:intron 30.0%
TGCAAATGCCACAATTAAAA+AGG - chr5_4:58538358-58538377 None:intergenic 30.0%
!!! CCATTTTAGTTGTTGCTTTA+GGG - chr5_4:58538589-58538608 None:intergenic 30.0%
!!! TCCATTTTAGTTGTTGCTTT+AGG - chr5_4:58538590-58538609 None:intergenic 30.0%
AAGCAACAACTAAAATGGAA+CGG + chr5_4:58538591-58538610 Msa0860030:intron 30.0%
!! ACTTTTGATTGCACTTGTAT+AGG + chr5_4:58538761-58538780 Msa0860030:intron 30.0%
CAAAACATCATTAAGGAAGA+TGG - chr5_4:58538806-58538825 None:intergenic 30.0%
! CATCTTCCTTAATGATGTTT+TGG + chr5_4:58538804-58538823 Msa0860030:intron 30.0%
TAGCAATACATATCAGAACA+CGG - chr5_4:58538850-58538869 None:intergenic 30.0%
TTTGTATGCAGTAAACTGAT+GGG - chr5_4:58538985-58539004 None:intergenic 30.0%
ATATGAACTTATTGATGGAG+AGG + chr5_4:58539127-58539146 Msa0860030:CDS 30.0%
ATTATGTGACTGATTAGCAA+TGG + chr5_4:58539367-58539386 Msa0860030:intron 30.0%
TATTTATGGTCTGTTTGGAT+TGG + chr5_4:58539669-58539688 Msa0860030:intron 30.0%
AAGCTGTATATAGTAGCTTT+AGG + chr5_4:58539736-58539755 Msa0860030:intron 30.0%
!!! TAGTAGCTTTAGGTTTTTAG+TGG + chr5_4:58539746-58539765 Msa0860030:intron 30.0%
GTCACTCTCTATATTCATTA+AGG + chr5_4:58539954-58539973 Msa0860030:intron 30.0%
TGATTACGAAGAAAAATGGT+GGG - chr5_4:58540173-58540192 None:intergenic 30.0%
! ATTACTTTCAGGTACAGTTA+AGG + chr5_4:58540450-58540469 Msa0860030:intron 30.0%
TGCAAATTAACTATGGCATA+AGG - chr5_4:58540657-58540676 None:intergenic 30.0%
TGGCAAATGCAAATTAACTA+TGG - chr5_4:58540664-58540683 None:intergenic 30.0%
!!! ATTTGCCATTTTGTAGTAAG+TGG + chr5_4:58540676-58540695 Msa0860030:intron 30.0%
GATTTCCACTTACTACAAAA+TGG - chr5_4:58540684-58540703 None:intergenic 30.0%
CTTCTAAACCGTTATATTCT+TGG - chr5_4:58540760-58540779 None:intergenic 30.0%
TTTAGAAGACCGAGTTTATT+AGG + chr5_4:58540772-58540791 Msa0860030:intron 30.0%
TTAGAAGACCGAGTTTATTA+GGG + chr5_4:58540773-58540792 Msa0860030:intron 30.0%
GCATTGTTGTCTTAATCATT+TGG + chr5_4:58540802-58540821 Msa0860030:intron 30.0%
TATAAGCATCTACATAAGGA+CGG - chr5_4:58540881-58540900 None:intergenic 30.0%
TAGCTATAAGCATCTACATA+AGG - chr5_4:58540885-58540904 None:intergenic 30.0%
!!! ATTTTTTTGAGACCTTCTCT+TGG - chr5_4:58541081-58541100 None:intergenic 30.0%
GAGAAGGTCTCAAAAAAATA+AGG + chr5_4:58541082-58541101 Msa0860030:CDS 30.0%
TTTATACTCCTATCTTGGAA+TGG - chr5_4:58541140-58541159 None:intergenic 30.0%
TGCAATTTATACTCCTATCT+TGG - chr5_4:58541145-58541164 None:intergenic 30.0%
! GCCGAATTGGAAAATTATTT+TGG + chr5_4:58541166-58541185 Msa0860030:CDS 30.0%
TGATCAGTATTATAAACAGC+TGG - chr5_4:58541233-58541252 None:intergenic 30.0%
GATATGAAGCAAGGAAATTT+AGG - chr5_4:58541282-58541301 None:intergenic 30.0%
AATTAATGCTCCATGCTTAA+GGG - chr5_4:58541384-58541403 None:intergenic 30.0%
AAATTAATGCTCCATGCTTA+AGG - chr5_4:58541385-58541404 None:intergenic 30.0%
GAGAAAGATACATTCTAACA+AGG - chr5_4:58541410-58541429 None:intergenic 30.0%
ACAAGACATAATCTAAGGAA+GGG - chr5_4:58541467-58541486 None:intergenic 30.0%
GAAAATCACTCTTTACTGTT+TGG - chr5_4:58541622-58541641 None:intergenic 30.0%
!!! ATTTTTATTCTTTGGGTTGC+AGG + chr5_4:58541676-58541695 Msa0860030:intron 30.0%
TTCCAGTTGTTTACAAATGT+AGG - chr5_4:58541702-58541721 None:intergenic 30.0%
ACATTTGTAAACAACTGGAA+AGG + chr5_4:58541702-58541721 Msa0860030:CDS 30.0%
CATTTGTAAACAACTGGAAA+GGG + chr5_4:58541703-58541722 Msa0860030:CDS 30.0%
ATTTGTAAACAACTGGAAAG+GGG + chr5_4:58541704-58541723 Msa0860030:CDS 30.0%
TTTAGAAATGATGCATAACG+CGG - chr5_4:58541747-58541766 None:intergenic 30.0%
GAACCAAATAACTAATGTTC+TGG + chr5_4:58541776-58541795 Msa0860030:CDS 30.0%
TCTGGAAAATTTGAACGATA+AGG + chr5_4:58541794-58541813 Msa0860030:CDS 30.0%
AACGATAAGGATACATATCA+GGG + chr5_4:58541807-58541826 Msa0860030:CDS 30.0%
AAGCATAAAAACCATGTCTT+AGG + chr5_4:58542098-58542117 Msa0860030:intron 30.0%
AAATGTACTAACCTAAGACA+TGG - chr5_4:58542112-58542131 None:intergenic 30.0%
! AGAAAATTTTCACTCGGAAA+GGG + chr5_4:58542259-58542278 Msa0860030:intron 30.0%
TCCATACAATTCAAAGAATC+AGG + chr5_4:58542456-58542475 Msa0860030:three_prime_UTR 30.0%
TCCTGATTCTTTGAATTGTA+TGG - chr5_4:58542460-58542479 None:intergenic 30.0%
ATTTCTGAGTATAAGAAGGT+CGG - chr5_4:58542579-58542598 None:intergenic 30.0%
ATATTTCAGGCATCTCAAAA+AGG - chr5_4:58542610-58542629 None:intergenic 30.0%
TTGCACATTTCAACTACTTA+TGG + chr5_4:58542691-58542710 Msa0860030:three_prime_UTR 30.0%
!!! TGACTCGGATTTTTTATTGT+AGG - chr5_4:58542738-58542757 None:intergenic 30.0%
AGTTAGCCATATCATATACA+TGG - chr5_4:58542837-58542856 None:intergenic 30.0%
TACTCATATCATTTACATGG+TGG - chr5_4:58542890-58542909 None:intergenic 30.0%
AAATTGATCTGACGTGGAAT+TGG + chr5_4:58535485-58535504 Msa0860030:five_prime_UTR 35.0%
TAGAATCAAAACCAAACACC+GGG - chr5_4:58535523-58535542 None:intergenic 35.0%
GTAGAATCAAAACCAAACAC+CGG - chr5_4:58535524-58535543 None:intergenic 35.0%
AGAGAGAACCTTGTTAATAG+CGG - chr5_4:58535605-58535624 None:intergenic 35.0%
! CGAATCAAAAACTGATTCAG+TGG - chr5_4:58535745-58535764 None:intergenic 35.0%
TTTCTCAGAAATTCTGCGTT+TGG + chr5_4:58535770-58535789 Msa0860030:intron 35.0%
TAATCACATGTGTTAGACAC+CGG - chr5_4:58536047-58536066 None:intergenic 35.0%
!! TATCATTTTTGTTGCTGGCA+AGG + chr5_4:58536147-58536166 Msa0860030:intron 35.0%
TTTCCCACATCACTATATGT+GGG - chr5_4:58536190-58536209 None:intergenic 35.0%
ATGTGGGAAACTCACAATTA+GGG + chr5_4:58536200-58536219 Msa0860030:intron 35.0%
CACAATTAGGGGGATATTAT+TGG + chr5_4:58536212-58536231 Msa0860030:intron 35.0%
TTGAGGATATATAAGAGAGG+GGG + chr5_4:58536283-58536302 Msa0860030:intron 35.0%
! CAATGCCTTAAGATTTTGAG+TGG + chr5_4:58536316-58536335 Msa0860030:intron 35.0%
CATCTCCACTCAAAATCTTA+AGG - chr5_4:58536324-58536343 None:intergenic 35.0%
!! TAAGATTTTGAGTGGAGATG+TGG + chr5_4:58536324-58536343 Msa0860030:intron 35.0%
TAAATAAGCACCAACGTGAT+CGG - chr5_4:58536354-58536373 None:intergenic 35.0%
! ATCACGTTGGTGCTTATTTA+AGG + chr5_4:58536354-58536373 Msa0860030:intron 35.0%
GCTTATTTAAGGATGGAGAT+TGG + chr5_4:58536365-58536384 Msa0860030:intron 35.0%
! TTTGATGCTAGCTTAACTCT+AGG + chr5_4:58536421-58536440 Msa0860030:intron 35.0%
GCCATTATCTGAATACCTTA+AGG - chr5_4:58536468-58536487 None:intergenic 35.0%
! AGATAATGGCTATACCAAAG+TGG + chr5_4:58536478-58536497 Msa0860030:intron 35.0%
! GATAATGGCTATACCAAAGT+GGG + chr5_4:58536479-58536498 Msa0860030:intron 35.0%
!!! TAGCTTGTTGGGGTTATTTT+AGG + chr5_4:58536551-58536570 Msa0860030:intron 35.0%
! GAAGTGTTAGATGAAATTGG+CGG - chr5_4:58536847-58536866 None:intergenic 35.0%
! AGGAAATACTTTGTTTGTGC+AGG + chr5_4:58536990-58537009 Msa0860030:intron 35.0%
! GGTCTGAATATTTTACCTCT+TGG + chr5_4:58537277-58537296 Msa0860030:intron 35.0%
GGACATCTTAATGCTTATCA+TGG + chr5_4:58537320-58537339 Msa0860030:intron 35.0%
! GTGTAGAATTCGAGTTCATT+AGG + chr5_4:58537405-58537424 Msa0860030:intron 35.0%
ATGTGACAGCACAAAATTTG+AGG - chr5_4:58537483-58537502 None:intergenic 35.0%
TTCTTAGTTAGGTGGAAAAC+TGG + chr5_4:58537533-58537552 Msa0860030:intron 35.0%
CTAGTAAAATTGGGTAATCC+TGG + chr5_4:58537570-58537589 Msa0860030:intron 35.0%
AAAAGTTCAACATGCCCTTT+CGG - chr5_4:58537701-58537720 None:intergenic 35.0%
! GTTTTGCTACAATCCTACAA+CGG - chr5_4:58537926-58537945 None:intergenic 35.0%
AACCATTGGCCAATTTAAGT+TGG + chr5_4:58538247-58538266 Msa0860030:CDS 35.0%
! ACCATTGGCCAATTTAAGTT+GGG + chr5_4:58538248-58538267 Msa0860030:CDS 35.0%
TCTCTGCAATAATGAACTGA+TGG - chr5_4:58538453-58538472 None:intergenic 35.0%
CCCTAAAGCAACAACTAAAA+TGG + chr5_4:58538586-58538605 Msa0860030:intron 35.0%
AACAACTAAAATGGAACGGA+GGG + chr5_4:58538595-58538614 Msa0860030:intron 35.0%
!!! CTATGGTTTTAGGCAACTTT+AGG + chr5_4:58538673-58538692 Msa0860030:intron 35.0%
TGATGTATCAAGGCAATCTA+TGG - chr5_4:58538708-58538727 None:intergenic 35.0%
!! CTCAGATTGATGATGTATCA+AGG - chr5_4:58538718-58538737 None:intergenic 35.0%
!!! CATATCAGAACACGGTTTTT+TGG - chr5_4:58538842-58538861 None:intergenic 35.0%
CAATGATCACGTCTTCTTAA+TGG + chr5_4:58538872-58538891 Msa0860030:intron 35.0%
GTTTGTATGCAGTAAACTGA+TGG - chr5_4:58538986-58539005 None:intergenic 35.0%
TTTACTGCATACAAACACGA+GGG + chr5_4:58538990-58539009 Msa0860030:CDS 35.0%
AAAACTTGGGTTCACATCAT+AGG - chr5_4:58539066-58539085 None:intergenic 35.0%
ACTTATTGATGGAGAGGTTA+AGG + chr5_4:58539133-58539152 Msa0860030:intron 35.0%
ACAGAAATGTTCAAAGAGCA+GGG - chr5_4:58539196-58539215 None:intergenic 35.0%
TTCCTCCTTCAAAGTTCATA+CGG + chr5_4:58539265-58539284 Msa0860030:intron 35.0%
AACATCCGTATGAACTTTGA+AGG - chr5_4:58539273-58539292 None:intergenic 35.0%
CATGTATTTGGCAATATCCT+AGG + chr5_4:58539316-58539335 Msa0860030:intron 35.0%
TAATAACAAGGTGAAGATCG+TGG - chr5_4:58539518-58539537 None:intergenic 35.0%
! CGTGGATGTTTCTAATAACA+AGG - chr5_4:58539530-58539549 None:intergenic 35.0%
ATTTAACAAGGTGAAGATCG+TGG - chr5_4:58539548-58539567 None:intergenic 35.0%
GTTGCATGTATGTTACAAGT+AGG + chr5_4:58539592-58539611 Msa0860030:intron 35.0%
! GGATGATTAGTTCAAAAGCA+TGG + chr5_4:58539919-58539938 Msa0860030:intron 35.0%
AAAATACCCATGCCACATAA+GGG - chr5_4:58540025-58540044 None:intergenic 35.0%
TTGGAAGGAACATGAGAAAT+GGG - chr5_4:58540149-58540168 None:intergenic 35.0%
TTTGGAAGGAACATGAGAAA+TGG - chr5_4:58540150-58540169 None:intergenic 35.0%
GTGATTACGAAGAAAAATGG+TGG - chr5_4:58540174-58540193 None:intergenic 35.0%
GTGGTGATTACGAAGAAAAA+TGG - chr5_4:58540177-58540196 None:intergenic 35.0%
AAGTAGCTTGAAGTTGAAGA+GGG - chr5_4:58540211-58540230 None:intergenic 35.0%
TCTTCTTCTTCCTTTCAACT+TGG + chr5_4:58540236-58540255 Msa0860030:intron 35.0%
TCTTCCCACCTAATTTCAAA+CGG - chr5_4:58540265-58540284 None:intergenic 35.0%
AAAACTTGTGGGTACTTCAT+GGG - chr5_4:58540348-58540367 None:intergenic 35.0%
CCACTTACCCAAGAATATAA+CGG + chr5_4:58540749-58540768 Msa0860030:intron 35.0%
! TGGGATTCTGTTTTCTTTTC+TGG + chr5_4:58540822-58540841 Msa0860030:intron 35.0%
ATAAGCATCTACATAAGGAC+GGG - chr5_4:58540880-58540899 None:intergenic 35.0%
CACATATTCCATTCCAAGAT+AGG + chr5_4:58541129-58541148 Msa0860030:CDS 35.0%
GTATAAATTGCAAGCCGAAT+TGG + chr5_4:58541153-58541172 Msa0860030:CDS 35.0%
TATTATAAACAGCTGGAGGA+TGG - chr5_4:58541226-58541245 None:intergenic 35.0%
TCAGTATTATAAACAGCTGG+AGG - chr5_4:58541230-58541249 None:intergenic 35.0%
GACAAGACATAATCTAAGGA+AGG - chr5_4:58541468-58541487 None:intergenic 35.0%
AGGAGACAAGACATAATCTA+AGG - chr5_4:58541472-58541491 None:intergenic 35.0%
ACAACAGTGTTGTCAAATAG+TGG + chr5_4:58541509-58541528 Msa0860030:intron 35.0%
GAACGATAAGGATACATATC+AGG + chr5_4:58541806-58541825 Msa0860030:CDS 35.0%
! TGTTACTAGAAGCATAGTTC+AGG - chr5_4:58541909-58541928 None:intergenic 35.0%
ATAAGGTAATCGGTTAGTGT+TGG - chr5_4:58541997-58542016 None:intergenic 35.0%
CATGTCTACTGGAAATTCAA+AGG - chr5_4:58542192-58542211 None:intergenic 35.0%
CTTTGAATTTCCAGTAGACA+TGG + chr5_4:58542190-58542209 Msa0860030:intron 35.0%
! CAGAAAATTTTCACTCGGAA+AGG + chr5_4:58542258-58542277 Msa0860030:intron 35.0%
TCTGCACATATATACGTTTG+TGG + chr5_4:58542314-58542333 Msa0860030:three_prime_UTR 35.0%
ATAAGTGATTATCACAGGAG+TGG + chr5_4:58542410-58542429 Msa0860030:three_prime_UTR 35.0%
TCAAAGAATCAGGAATCCAA+AGG + chr5_4:58542466-58542485 Msa0860030:three_prime_UTR 35.0%
ACTACAACAAATTTCGTCTC+TGG + chr5_4:58542516-58542535 Msa0860030:three_prime_UTR 35.0%
TTTCCTATGGCTGATATTTC+AGG - chr5_4:58542623-58542642 None:intergenic 35.0%
AGTTGAAATGTGCAATTCGA+TGG - chr5_4:58542686-58542705 None:intergenic 35.0%
ATTCGGCCATGTATATGATA+TGG + chr5_4:58542828-58542847 Msa0860030:three_prime_UTR 35.0%
AGAGAGAGAGAGAGAGAATT+GGG - chr5_4:58535577-58535596 None:intergenic 40.0%
TCTCATCTCCGCTATTAACA+AGG + chr5_4:58535594-58535613 Msa0860030:five_prime_UTR 40.0%
ACGGAATCATCAATAGAGAG+AGG - chr5_4:58535628-58535647 None:intergenic 40.0%
! AATTAGGGGTGCACAATCTT+TGG + chr5_4:58535994-58536013 Msa0860030:intron 40.0%
TCATCCCACATATAGTGATG+TGG + chr5_4:58536183-58536202 Msa0860030:intron 40.0%
CATCCCACATATAGTGATGT+GGG + chr5_4:58536184-58536203 Msa0860030:intron 40.0%
GTTTCCCACATCACTATATG+TGG - chr5_4:58536191-58536210 None:intergenic 40.0%
GATGTGGGAAACTCACAATT+AGG + chr5_4:58536199-58536218 Msa0860030:intron 40.0%
TGTGGGAAACTCACAATTAG+GGG + chr5_4:58536201-58536220 Msa0860030:intron 40.0%
TATTGGAGTTCAAGTGTGAG+TGG + chr5_4:58536229-58536248 Msa0860030:intron 40.0%
AAATAAGCACCAACGTGATC+GGG - chr5_4:58536353-58536372 None:intergenic 40.0%
! CGTTGGTGCTTATTTAAGGA+TGG + chr5_4:58536358-58536377 Msa0860030:intron 40.0%
TTTAAGGATGGAGATTGGAG+AGG + chr5_4:58536370-58536389 Msa0860030:intron 40.0%
GTTCCTTGTTGGACATTTGT+AGG + chr5_4:58536501-58536520 Msa0860030:intron 40.0%
CTTCCTACAAATGTCCAACA+AGG - chr5_4:58536507-58536526 None:intergenic 40.0%
TTGGACATTTGTAGGAAGAC+TGG + chr5_4:58536509-58536528 Msa0860030:intron 40.0%
GCTTATCAGCTATTAGCTAG+CGG - chr5_4:58536652-58536671 None:intergenic 40.0%
ACGCATCTTGAAGTGTGTTA+GGG + chr5_4:58536764-58536783 Msa0860030:intron 40.0%
TTGATTATTGAGGATGGTGC+TGG + chr5_4:58537036-58537055 Msa0860030:exon 40.0%
TTGAACTTCGCAGGAATATC+AGG - chr5_4:58537100-58537119 None:intergenic 40.0%
ATCCAGCACATCATTTGTAC+TGG + chr5_4:58537142-58537161 Msa0860030:CDS 40.0%
TTCCAGTACAAATGATGTGC+TGG - chr5_4:58537147-58537166 None:intergenic 40.0%
GGGTTGACCATATGAATCAA+AGG + chr5_4:58537299-58537318 Msa0860030:intron 40.0%
GTTGTCCAAGCTTCTTAGTT+AGG + chr5_4:58537522-58537541 Msa0860030:intron 40.0%
TTCCACCTAACTAAGAAGCT+TGG - chr5_4:58537530-58537549 None:intergenic 40.0%
!! AACTTTCCATAAGAGTACCC+AGG - chr5_4:58537591-58537610 None:intergenic 40.0%
!!! AAGCCATTTTGGAGCTTGAT+AGG + chr5_4:58537637-58537656 Msa0860030:intron 40.0%
!!! AGCCATTTTGGAGCTTGATA+GGG + chr5_4:58537638-58537657 Msa0860030:intron 40.0%
AACCCTATCAAGCTCCAAAA+TGG - chr5_4:58537643-58537662 None:intergenic 40.0%
TTAACAAGAAAAGAAGGGGC+AGG - chr5_4:58537735-58537754 None:intergenic 40.0%
CACAGTATCACTGATCTCAA+GGG - chr5_4:58537824-58537843 None:intergenic 40.0%
TGTTCTGCCTTTCTTAGCAT+GGG + chr5_4:58537892-58537911 Msa0860030:intron 40.0%
AGTAGTACCCATGCTAAGAA+AGG - chr5_4:58537902-58537921 None:intergenic 40.0%
TCCCAACTTAAATTGGCCAA+TGG - chr5_4:58538252-58538271 None:intergenic 40.0%
AAAATCACACCTGATGACCA+TGG - chr5_4:58538280-58538299 None:intergenic 40.0%
CAACAACTAAAATGGAACGG+AGG + chr5_4:58538594-58538613 Msa0860030:intron 40.0%
! TGAGCTAGGTCTATGGTTTT+AGG + chr5_4:58538663-58538682 Msa0860030:intron 40.0%
TATCAAGGCAATCTATGGAG+AGG - chr5_4:58538703-58538722 None:intergenic 40.0%
CGTCTTCTTAATGGTTGTGA+AGG + chr5_4:58538881-58538900 Msa0860030:intron 40.0%
TGGTTGTGAAGGTTATTCCA+TGG + chr5_4:58538892-58538911 Msa0860030:intron 40.0%
GGTTGTGAAGGTTATTCCAT+GGG + chr5_4:58538893-58538912 Msa0860030:intron 40.0%
GTTGTGAAGGTTATTCCATG+GGG + chr5_4:58538894-58538913 Msa0860030:intron 40.0%
GTTTACTGCATACAAACACG+AGG + chr5_4:58538989-58539008 Msa0860030:CDS 40.0%
ATAAATCCAGGTTCTGCATC+TGG + chr5_4:58539023-58539042 Msa0860030:CDS 40.0%
TGTCCATGAGCACAAAACTT+GGG - chr5_4:58539079-58539098 None:intergenic 40.0%
ATGTCCATGAGCACAAAACT+TGG - chr5_4:58539080-58539099 None:intergenic 40.0%
GACAGAAATGTTCAAAGAGC+AGG - chr5_4:58539197-58539216 None:intergenic 40.0%
! ATCCGTATGAACTTTGAAGG+AGG - chr5_4:58539270-58539289 None:intergenic 40.0%
! GTACTCCTTTTACCAGTGAT+TGG + chr5_4:58539396-58539415 Msa0860030:intron 40.0%
CTAGACCAATCACTGGTAAA+AGG - chr5_4:58539404-58539423 None:intergenic 40.0%
AAGATCTCTAGACCAATCAC+TGG - chr5_4:58539411-58539430 None:intergenic 40.0%
GGTGGTATTTATGGTCTGTT+TGG + chr5_4:58539664-58539683 Msa0860030:intron 40.0%
!! TTTTAGTGGTGAGAGTGCAT+TGG + chr5_4:58539760-58539779 Msa0860030:intron 40.0%
AATGGAATGTGGTATTGCCT+TGG + chr5_4:58539783-58539802 Msa0860030:intron 40.0%
!! TATCCAAACACTGACTTGGT+TGG + chr5_4:58539814-58539833 Msa0860030:intron 40.0%
TGGAAGAGTGGTATGGAAAA+GGG - chr5_4:58539997-58540016 None:intergenic 40.0%
ATGGAAGAGTGGTATGGAAA+AGG - chr5_4:58539998-58540017 None:intergenic 40.0%
AAATACCCATGCCACATAAG+GGG - chr5_4:58540024-58540043 None:intergenic 40.0%
GAAAATACCCATGCCACATA+AGG - chr5_4:58540026-58540045 None:intergenic 40.0%
!! AAATGGGTTTGGTTGGTAGT+GGG - chr5_4:58540133-58540152 None:intergenic 40.0%
! ACATGAGAAATGGGTTTGGT+TGG - chr5_4:58540140-58540159 None:intergenic 40.0%
! AGGAACATGAGAAATGGGTT+TGG - chr5_4:58540144-58540163 None:intergenic 40.0%
!! AGAAAAATGGTGGGTTTGGA+AGG - chr5_4:58540164-58540183 None:intergenic 40.0%
!! ACGAAGAAAAATGGTGGGTT+TGG - chr5_4:58540168-58540187 None:intergenic 40.0%
GAAGTAGCTTGAAGTTGAAG+AGG - chr5_4:58540212-58540231 None:intergenic 40.0%
! CTTGGCTTCCGTTTGAAATT+AGG + chr5_4:58540254-58540273 Msa0860030:intron 40.0%
! GCTTCCGTTTGAAATTAGGT+GGG + chr5_4:58540258-58540277 Msa0860030:intron 40.0%
CAAAACTTGTGGGTACTTCA+TGG - chr5_4:58540349-58540368 None:intergenic 40.0%
CCGTTATATTCTTGGGTAAG+TGG - chr5_4:58540752-58540771 None:intergenic 40.0%
ACCGAGTTTATTAGGGACAT+GGG + chr5_4:58540780-58540799 Msa0860030:intron 40.0%
!! CTGCTTCTTTTGTTGCTGTT+TGG + chr5_4:58540994-58541013 Msa0860030:intron 40.0%
GTGAAGATACTACCAAGAGA+AGG + chr5_4:58541066-58541085 Msa0860030:intron 40.0%
TATCATCCATCCCTTAAGCA+TGG + chr5_4:58541371-58541390 Msa0860030:intron 40.0%
GGCCTACATTTGTAAACAAC+TGG + chr5_4:58541697-58541716 Msa0860030:intron 40.0%
AAGGATACATATCAGGGTGT+TGG + chr5_4:58541813-58541832 Msa0860030:CDS 40.0%
ATGCTTCTAGTAACATCACG+TGG + chr5_4:58541914-58541933 Msa0860030:exon 40.0%
TGCTTCTAGTAACATCACGT+GGG + chr5_4:58541915-58541934 Msa0860030:exon 40.0%
TCTTCTTCATCGATCCATTC+TGG - chr5_4:58541952-58541971 None:intergenic 40.0%
TACGCTTTCAAGAGCCATAT+TGG - chr5_4:58542158-58542177 None:intergenic 40.0%
GGATTGTTGCATAAGCTTCT+CGG - chr5_4:58542289-58542308 None:intergenic 40.0%
AATACTTTGAGCTGCAGTGA+TGG - chr5_4:58542342-58542361 None:intergenic 40.0%
! GCTCAAAGTATTCGAATGTC+TGG + chr5_4:58542350-58542369 Msa0860030:three_prime_UTR 40.0%
ATGCCTGAAATATCAGCCAT+AGG + chr5_4:58542617-58542636 Msa0860030:three_prime_UTR 40.0%
CAGTGTAGCATTGTTTCCTA+TGG - chr5_4:58542636-58542655 None:intergenic 40.0%
AATGCTACACTGTTCAACTC+AGG + chr5_4:58542644-58542663 Msa0860030:three_prime_UTR 40.0%
ACTGTTCAACTCAGGTGTAA+TGG + chr5_4:58542652-58542671 Msa0860030:three_prime_UTR 40.0%
TGATTCTTCTGAGCTTGACT+CGG - chr5_4:58542753-58542772 None:intergenic 40.0%
AATCAAAACCAAACACCGGG+AGG - chr5_4:58535520-58535539 None:intergenic 45.0%
AGAGAGAGAGAGAGAATTGG+GGG - chr5_4:58535575-58535594 None:intergenic 45.0%
GAGAGAGAGAGAGAGAATTG+GGG - chr5_4:58535576-58535595 None:intergenic 45.0%
GAGAGAGAGAGAGAGAGAAT+TGG - chr5_4:58535578-58535597 None:intergenic 45.0%
CTTCTGATCGAAAACGTGAC+CGG + chr5_4:58536025-58536044 Msa0860030:intron 45.0%
AGTGTCTACGTGTCAGTCTT+TGG + chr5_4:58536100-58536119 Msa0860030:intron 45.0%
GTGGGAAACTCACAATTAGG+GGG + chr5_4:58536202-58536221 Msa0860030:intron 45.0%
! TACCAAAGTGGGTTCCTTGT+TGG + chr5_4:58536490-58536509 Msa0860030:intron 45.0%
ACAGAGCTGTACGAGAAACA+AGG - chr5_4:58536615-58536634 None:intergenic 45.0%
GACGCATCTTGAAGTGTGTT+AGG + chr5_4:58536763-58536782 Msa0860030:intron 45.0%
CGCATCTTGAAGTGTGTTAG+GGG + chr5_4:58536765-58536784 Msa0860030:intron 45.0%
GGATATGCACATACCCCATA+GGG + chr5_4:58537072-58537091 Msa0860030:CDS 45.0%
AGCATGGATTTGAACTTCGC+AGG - chr5_4:58537109-58537128 None:intergenic 45.0%
TTCAAATCCATGCTTGTCCC+TGG + chr5_4:58537115-58537134 Msa0860030:CDS 45.0%
TTCATATGGTCAACCCCAAG+AGG - chr5_4:58537295-58537314 None:intergenic 45.0%
GTCCAAGCTTCTTAGTTAGG+TGG + chr5_4:58537525-58537544 Msa0860030:intron 45.0%
GGTAATCCTGGGTACTCTTA+TGG + chr5_4:58537582-58537601 Msa0860030:intron 45.0%
GGCATGTTAGACAAACCAAG+GGG - chr5_4:58537666-58537685 None:intergenic 45.0%
CGGCATGTTAGACAAACCAA+GGG - chr5_4:58537667-58537686 None:intergenic 45.0%
ACGGCATGTTAGACAAACCA+AGG - chr5_4:58537668-58537687 None:intergenic 45.0%
ACATGCCCTTTCGGAATAGT+GGG - chr5_4:58537692-58537711 None:intergenic 45.0%
AACATGCCCTTTCGGAATAG+TGG - chr5_4:58537693-58537712 None:intergenic 45.0%
AGTATCACTGATCTCAAGGG+AGG - chr5_4:58537821-58537840 None:intergenic 45.0%
GCACAGTATCACTGATCTCA+AGG - chr5_4:58537825-58537844 None:intergenic 45.0%
CTGTTCTGCCTTTCTTAGCA+TGG + chr5_4:58537891-58537910 Msa0860030:intron 45.0%
ATGGGTACTACTACCGTTGT+AGG + chr5_4:58537910-58537929 Msa0860030:intron 45.0%
ACTCACCACGAGTTATATGC+AGG - chr5_4:58538190-58538209 None:intergenic 45.0%
ATGGTTAGTGTCTTGGTCTC+TGG - chr5_4:58538233-58538252 None:intergenic 45.0%
GAGACCAAGACACTAACCAT+TGG + chr5_4:58538233-58538252 Msa0860030:CDS 45.0%
TTGGCCAATGGTTAGTGTCT+TGG - chr5_4:58538240-58538259 None:intergenic 45.0%
GGCACAGTCCCAACTTAAAT+TGG - chr5_4:58538259-58538278 None:intergenic 45.0%
!! TTTAAGTTGGGACTGTGCCA+TGG + chr5_4:58538260-58538279 Msa0860030:CDS 45.0%
GTGCAGAGGAAAACCTAAAC+TGG - chr5_4:58538625-58538644 None:intergenic 45.0%
TTTCCTCTGCACTTTCACCT+TGG + chr5_4:58538633-58538652 Msa0860030:intron 45.0%
TTCCTCTGCACTTTCACCTT+GGG + chr5_4:58538634-58538653 Msa0860030:intron 45.0%
GGTTTCATGAGCTAGGTCTA+TGG + chr5_4:58538656-58538675 Msa0860030:intron 45.0%
GGTGGTGTGGTTATAAATCC+AGG + chr5_4:58539011-58539030 Msa0860030:CDS 45.0%
ATCATAGGTCATGCTGCTGT+AGG - chr5_4:58539051-58539070 None:intergenic 45.0%
!! GAACCCAAGTTTTGTGCTCA+TGG + chr5_4:58539073-58539092 Msa0860030:CDS 45.0%
GAGTGCATTGGAATGGAATG+TGG + chr5_4:58539772-58539791 Msa0860030:intron 45.0%
GTTTGGATACACGTTTGCCA+AGG - chr5_4:58539803-58539822 None:intergenic 45.0%
! CGTGTATCCAAACACTGACT+TGG + chr5_4:58539810-58539829 Msa0860030:intron 45.0%
ACACCAACCAAGTCAGTGTT+TGG - chr5_4:58539820-58539839 None:intergenic 45.0%
! ATAAGGGGTGTATGGAAGAG+TGG - chr5_4:58540009-58540028 None:intergenic 45.0%
TCTTCCATACACCCCTTATG+TGG + chr5_4:58540010-58540029 Msa0860030:intron 45.0%
ATACACCCCTTATGTGGCAT+GGG + chr5_4:58540016-58540035 Msa0860030:intron 45.0%
GAGATCTAAGAGAGAGAGGA+GGG - chr5_4:58540077-58540096 None:intergenic 45.0%
AAGGGAGATCTAAGAGAGAG+AGG - chr5_4:58540081-58540100 None:intergenic 45.0%
TGAGTGAGAGGGAGAAGAAA+GGG - chr5_4:58540099-58540118 None:intergenic 45.0%
AATGACCGAAGTGAGTGAGA+GGG - chr5_4:58540110-58540129 None:intergenic 45.0%
!! GAAATGGGTTTGGTTGGTAG+TGG - chr5_4:58540134-58540153 None:intergenic 45.0%
! CAAACGGAAGCCAAGTTGAA+AGG - chr5_4:58540249-58540268 None:intergenic 45.0%
! GGCTTCCGTTTGAAATTAGG+TGG + chr5_4:58540257-58540276 Msa0860030:intron 45.0%
! GGAAGAAAGCATGCTCATCT+GGG - chr5_4:58540296-58540315 None:intergenic 45.0%
GACCGAGTTTATTAGGGACA+TGG + chr5_4:58540779-58540798 Msa0860030:intron 45.0%
GCCCATGTCCCTAATAAACT+CGG - chr5_4:58540784-58540803 None:intergenic 45.0%
CTTCACTGCATCCAATAGAG+AGG - chr5_4:58541052-58541071 None:intergenic 45.0%
! TGAAAGACGCAGTTTGCTCA+TGG + chr5_4:58541333-58541352 Msa0860030:intron 45.0%
AATGCTCCATGCTTAAGGGA+TGG - chr5_4:58541380-58541399 None:intergenic 45.0%
TCGCGAATCACGAAAAACAG+CGG - chr5_4:58541570-58541589 None:intergenic 45.0%
ATGACAGTGAGATTGACCAC+TGG + chr5_4:58541850-58541869 Msa0860030:CDS 45.0%
! TAGAAGCATAGTTCAGGCGA+AGG - chr5_4:58541903-58541922 None:intergenic 45.0%
GGGAAGACTTGTATCCAGAA+TGG + chr5_4:58541935-58541954 Msa0860030:three_prime_UTR 45.0%
! TCGGTTAGTGTTGGACAAGT+AGG - chr5_4:58541988-58542007 None:intergenic 45.0%
TGCGTTCCATGAAGCCAATA+TGG + chr5_4:58542141-58542160 Msa0860030:intron 45.0%
!! CAAGAGCCATATTGGCTTCA+TGG - chr5_4:58542150-58542169 None:intergenic 45.0%
CGAGTTAACTCCATGTCTAC+TGG - chr5_4:58542203-58542222 None:intergenic 45.0%
CGTATATATGTGCAGAGTGC+AGG - chr5_4:58542310-58542329 None:intergenic 45.0%
TGATTATCACAGGAGTGGCT+TGG + chr5_4:58542415-58542434 Msa0860030:three_prime_UTR 45.0%
! AACCAGAGGCATATAACGAG+TGG + chr5_4:58542492-58542511 Msa0860030:three_prime_UTR 45.0%
TTCCACTCGTTATATGCCTC+TGG - chr5_4:58542497-58542516 None:intergenic 45.0%
GTTCAACTCAGGTGTAATGG+TGG + chr5_4:58542655-58542674 Msa0860030:three_prime_UTR 45.0%
!!! TTTTCATTTATATATAAATT+TGG + chr5_4:58540629-58540648 Msa0860030:intron 5.0%
GTCCAACAAGGAACCCACTT+TGG - chr5_4:58536495-58536514 None:intergenic 50.0%
TCGTACAGCTCTGTTTCGCA+AGG + chr5_4:58536621-58536640 Msa0860030:intron 50.0%
!! ATTGAGGATGGTGCTGGTCT+TGG + chr5_4:58537042-58537061 Msa0860030:exon 50.0%
GGGTATGTGCATATCCCCTA+GGG - chr5_4:58537068-58537087 None:intergenic 50.0%
GGGATATGCACATACCCCAT+AGG + chr5_4:58537071-58537090 Msa0860030:CDS 50.0%
AGGAATATCAGGCGCCCTAT+GGG - chr5_4:58537089-58537108 None:intergenic 50.0%
TGATGTGCTGGATCTTGCCA+GGG - chr5_4:58537135-58537154 None:intergenic 50.0%
ATGATGTGCTGGATCTTGCC+AGG - chr5_4:58537136-58537155 None:intergenic 50.0%
CTCCAAAATGGCTTCACCAC+CGG - chr5_4:58537631-58537650 None:intergenic 50.0%
CCACGAGTTATATGCAGGTC+AGG - chr5_4:58538185-58538204 None:intergenic 50.0%
CCTGACCTGCATATAACTCG+TGG + chr5_4:58538182-58538201 Msa0860030:CDS 50.0%
!! AACGGAGGGAGTACCAGTTT+AGG + chr5_4:58538609-58538628 Msa0860030:intron 50.0%
TCCTCTGCACTTTCACCTTG+GGG + chr5_4:58538635-58538654 Msa0860030:intron 50.0%
ACCTTGGGGTTTCATGAGCT+AGG + chr5_4:58538649-58538668 Msa0860030:intron 50.0%
ACCTAGCTCATGAAACCCCA+AGG - chr5_4:58538653-58538672 None:intergenic 50.0%
GACGTAGACATCCTTGTCAC+AGG + chr5_4:58538954-58538973 Msa0860030:CDS 50.0%
ACTGCATACAAACACGAGGG+TGG + chr5_4:58538993-58539012 Msa0860030:CDS 50.0%
ATACAAACACGAGGGTGGTG+TGG + chr5_4:58538998-58539017 Msa0860030:CDS 50.0%
! GTGGTGAGAGTGCATTGGAA+TGG + chr5_4:58539765-58539784 Msa0860030:intron 50.0%
GGGTGTATGGAAGAGTGGTA+TGG - chr5_4:58540004-58540023 None:intergenic 50.0%
! CATGCCACATAAGGGGTGTA+TGG - chr5_4:58540017-58540036 None:intergenic 50.0%
CATACACCCCTTATGTGGCA+TGG + chr5_4:58540015-58540034 Msa0860030:intron 50.0%
GGAGATCTAAGAGAGAGAGG+AGG - chr5_4:58540078-58540097 None:intergenic 50.0%
GTGAGTGAGAGGGAGAAGAA+AGG - chr5_4:58540100-58540119 None:intergenic 50.0%
CTTCTCCCTCTCACTCACTT+CGG + chr5_4:58540102-58540121 Msa0860030:intron 50.0%
GAATGACCGAAGTGAGTGAG+AGG - chr5_4:58540111-58540130 None:intergenic 50.0%
GAAGAGGGCGAAGAAAGTTG+TGG - chr5_4:58540196-58540215 None:intergenic 50.0%
! GGGAAGAAAGCATGCTCATC+TGG - chr5_4:58540297-58540316 None:intergenic 50.0%
TACTTCATGGGAGGAAGCAG+TGG - chr5_4:58540336-58540355 None:intergenic 50.0%
ACTTGTGGGTACTTCATGGG+AGG - chr5_4:58540345-58540364 None:intergenic 50.0%
CTGGTACTAGTTGCTTCCAG+TGG - chr5_4:58541869-58541888 None:intergenic 50.0%
AACGCGTGATCTCGTGATTC+TGG + chr5_4:58542376-58542395 Msa0860030:three_prime_UTR 50.0%
GAATCCAAAGGCAGAACCAG+AGG + chr5_4:58542478-58542497 Msa0860030:three_prime_UTR 50.0%
!! TATGCCTCTGGTTCTGCCTT+TGG - chr5_4:58542485-58542504 None:intergenic 50.0%
!! AATTGGTGCCACTCTCCTCC+CGG + chr5_4:58535502-58535521 Msa0860030:five_prime_UTR 55.0%
TCTACCGCTCACCTTCCGAT+CGG + chr5_4:58535539-58535558 Msa0860030:five_prime_UTR 55.0%
TCTACCGATCGGAAGGTGAG+CGG - chr5_4:58535546-58535565 None:intergenic 55.0%
GAGTCACTCTACCGATCGGA+AGG - chr5_4:58535553-58535572 None:intergenic 55.0%
ATGTGGTGTCCCGATCACGT+TGG + chr5_4:58536341-58536360 Msa0860030:intron 55.0%
GGGGTATGTGCATATCCCCT+AGG - chr5_4:58537069-58537088 None:intergenic 55.0%
GGAATATCAGGCGCCCTATG+GGG - chr5_4:58537088-58537107 None:intergenic 55.0%
CAGGAATATCAGGCGCCCTA+TGG - chr5_4:58537090-58537109 None:intergenic 55.0%
GATCTTGCCAGGGACAAGCA+TGG - chr5_4:58537125-58537144 None:intergenic 55.0%
TTCACAGCTGCTCCTGTGAC+CGG + chr5_4:58537609-58537628 Msa0860030:intron 55.0%
! GACCGGTGGTGAAGCCATTT+TGG + chr5_4:58537626-58537645 Msa0860030:intron 55.0%
GAGCTTGATAGGGTTCCCCT+TGG + chr5_4:58537648-58537667 Msa0860030:intron 55.0%
!! CCCTTTCGGAATAGTGGGCA+CGG - chr5_4:58537687-58537706 None:intergenic 55.0%
CCGTGCCCACTATTCCGAAA+GGG + chr5_4:58537684-58537703 Msa0860030:intron 55.0%
CACTGATCTCAAGGGAGGTG+TGG - chr5_4:58537816-58537835 None:intergenic 55.0%
! ACCCCAAGGTGAAAGTGCAG+AGG - chr5_4:58538639-58538658 None:intergenic 55.0%
GGTTATTCCATGGGGAGACC+TGG + chr5_4:58538902-58538921 Msa0860030:intron 55.0%
GATGGGTGTGACCTGTGACA+AGG - chr5_4:58538968-58538987 None:intergenic 55.0%
TAGGCACCAGATGCAGAACC+TGG - chr5_4:58539032-58539051 None:intergenic 55.0%
! GTGGCTCGGGTAAGTTTGCA+GGG - chr5_4:58540317-58540336 None:intergenic 55.0%
! AGTGGCTCGGGTAAGTTTGC+AGG - chr5_4:58540318-58540337 None:intergenic 55.0%
AACTGGAAAGGGGAGCTCGA+TGG + chr5_4:58541714-58541733 Msa0860030:CDS 55.0%
ACCAAACACCGGGAGGAGAG+TGG - chr5_4:58535513-58535532 None:intergenic 60.0%
GGGGGAGTCACTCTACCGAT+CGG - chr5_4:58535557-58535576 None:intergenic 60.0%
!! ATGGTGCTGGTCTTGGCCCT+AGG + chr5_4:58537049-58537068 Msa0860030:CDS 60.0%
!! TGGTGCTGGTCTTGGCCCTA+GGG + chr5_4:58537050-58537069 Msa0860030:CDS 60.0%
ATGGCTTCACCACCGGTCAC+AGG - chr5_4:58537624-58537643 None:intergenic 60.0%
GCCGTGCCCACTATTCCGAA+AGG + chr5_4:58537683-58537702 Msa0860030:intron 60.0%
GGGACTGTGCCATGGTCATC+AGG + chr5_4:58538268-58538287 Msa0860030:CDS 60.0%
GTAGCATTGCCAGCGAGTCC+AGG - chr5_4:58538923-58538942 None:intergenic 60.0%
CATCGATGCTCTGCGTGTCG+TGG + chr5_4:58539097-58539116 Msa0860030:CDS 60.0%
ATGGGAGGAAGCAGTGGCTC+GGG - chr5_4:58540330-58540349 None:intergenic 60.0%
CATGGGAGGAAGCAGTGGCT+CGG - chr5_4:58540331-58540350 None:intergenic 60.0%
GGCGAAGGACTACACGCTTC+TGG - chr5_4:58541888-58541907 None:intergenic 60.0%
GCCACTCTCCTCCCGGTGTT+TGG + chr5_4:58535509-58535528 Msa0860030:five_prime_UTR 65.0%
!! GGTGCTGGTCTTGGCCCTAG+GGG + chr5_4:58537051-58537070 Msa0860030:CDS 65.0%
ACAGCTGCTCCTGTGACCGG+TGG + chr5_4:58537612-58537631 Msa0860030:intron 65.0%
AGCGAGTCCAGGTCTCCCCA+TGG - chr5_4:58538912-58538931 None:intergenic 65.0%
ATGGGGAGACCTGGACTCGC+TGG + chr5_4:58538911-58538930 Msa0860030:CDS 65.0%
! AGGAGTGGCTTGGCAGCAGC+TGG + chr5_4:58542425-58542444 Msa0860030:three_prime_UTR 65.0%
! GTGGCTTGGCAGCAGCTGGA+TGG + chr5_4:58542429-58542448 Msa0860030:three_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 58535482 58542948 58535482 ID=Msa0860030;Name=Msa0860030
chr5_4 mRNA 58535482 58542948 58535482 ID=Msa0860030-mRNA-1;Parent=Msa0860030;Name=Msa0860030-mRNA-1;_AED=0.18;_eAED=0.18;_QI=171|0.85|0.75|1|0.42|0.37|8|739|377
chr5_4 exon 58535482 58535615 58535482 ID=Msa0860030-mRNA-1:exon:17869;Parent=Msa0860030-mRNA-1
chr5_4 exon 58537012 58537180 58537012 ID=Msa0860030-mRNA-1:exon:17870;Parent=Msa0860030-mRNA-1
chr5_4 exon 58538152 58538289 58538152 ID=Msa0860030-mRNA-1:exon:17871;Parent=Msa0860030-mRNA-1
chr5_4 exon 58538903 58539148 58538903 ID=Msa0860030-mRNA-1:exon:17872;Parent=Msa0860030-mRNA-1
chr5_4 exon 58540276 58540460 58540276 ID=Msa0860030-mRNA-1:exon:17873;Parent=Msa0860030-mRNA-1
chr5_4 exon 58541067 58541273 58541067 ID=Msa0860030-mRNA-1:exon:17874;Parent=Msa0860030-mRNA-1
chr5_4 exon 58541698 58541974 58541698 ID=Msa0860030-mRNA-1:exon:17875;Parent=Msa0860030-mRNA-1
chr5_4 exon 58542261 58542948 58542261 ID=Msa0860030-mRNA-1:exon:17876;Parent=Msa0860030-mRNA-1
chr5_4 five_prime_UTR 58535482 58535615 58535482 ID=Msa0860030-mRNA-1:five_prime_utr;Parent=Msa0860030-mRNA-1
chr5_4 five_prime_UTR 58537012 58537048 58537012 ID=Msa0860030-mRNA-1:five_prime_utr;Parent=Msa0860030-mRNA-1
chr5_4 CDS 58537049 58537180 58537049 ID=Msa0860030-mRNA-1:cds;Parent=Msa0860030-mRNA-1
chr5_4 CDS 58538152 58538289 58538152 ID=Msa0860030-mRNA-1:cds;Parent=Msa0860030-mRNA-1
chr5_4 CDS 58538903 58539148 58538903 ID=Msa0860030-mRNA-1:cds;Parent=Msa0860030-mRNA-1
chr5_4 CDS 58540276 58540460 58540276 ID=Msa0860030-mRNA-1:cds;Parent=Msa0860030-mRNA-1
chr5_4 CDS 58541067 58541273 58541067 ID=Msa0860030-mRNA-1:cds;Parent=Msa0860030-mRNA-1
chr5_4 CDS 58541698 58541923 58541698 ID=Msa0860030-mRNA-1:cds;Parent=Msa0860030-mRNA-1
chr5_4 three_prime_UTR 58541924 58541974 58541924 ID=Msa0860030-mRNA-1:three_prime_utr;Parent=Msa0860030-mRNA-1
chr5_4 three_prime_UTR 58542261 58542948 58542261 ID=Msa0860030-mRNA-1:three_prime_utr;Parent=Msa0860030-mRNA-1
Gene Sequence

>Msa0860030

ATGGTGCTGGTCTTGGCCCTAGGGGATATGCACATACCCCATAGGGCGCCTGATATTCCTGCGAAGTTCAAATCCATGCTTGTCCCTGGCAAGATCCAGCACATCATTTGTACTGGAAACTTGTGTATTAAAGAAGTCCATGACTATCTAAAGACTCTTTGTCCTGACCTGCATATAACTCGTGGTGAGTATGATGAAGATTCAAGATATCCAGAGACCAAGACACTAACCATTGGCCAATTTAAGTTGGGACTGTGCCATGGTCATCAGGTTATTCCATGGGGAGACCTGGACTCGCTGGCAATGCTACAGAGACAGCTTGACGTAGACATCCTTGTCACAGGTCACACCCATCAGTTTACTGCATACAAACACGAGGGTGGTGTGGTTATAAATCCAGGTTCTGCATCTGGTGCCTACAGCAGCATGACCTATGATGTGAACCCAAGTTTTGTGCTCATGGACATCGATGCTCTGCGTGTCGTGGTCTATGTATATGAACTTATTGATGGAGAGGTGGGAAGATATACAAGCCCAGATGAGCATGCTTTCTTCCCTGCAAACTTACCCGAGCCACTGCTTCCTCCCATGAAGTACCCACAAGTTTTGAGATTTTATCTTCTTTTGTGTTACGTACGTGAAAATTCATTTGATATTCGACAAACATTGAATTTCCTTTTTGTAGACTATATTACTTTCAGTGAAGATACTACCAAGAGAAGGTCTCAAAAAAATAAGGATTTTAAAGATGTTGAGAAAGCATCACATATTCCATTCCAAGATAGGAGTATAAATTGCAAGCCGAATTGGAAAATTATTTTGGTTATTATTATCTTGGGAACTTTGTTTACAATTTTCCATCCTCCAGCTGTTTATAATACTGATCATATATCAAACTTTATATCACGGCCTACATTTGTAAACAACTGGAAAGGGGAGCTCGATGGAACTGATCCGCGTTATGCATCATTTCTAAATATTGACTGGAACCAAATAACTAATGTTCTGGAAAATTTGAACGATAAGGATACATATCAGGGTGTTGGCTTATTAAACTTCAATGACAGTGAGATTGACCACTGGAAGCAACTAGTACCAGAAGCGTGTAGTCCTTCGCCTGAACTATGCTTCTAG
Protein sequence

>Msa0860030

MVLVLALGDMHIPHRAPDIPAKFKSMLVPGKIQHIICTGNLCIKEVHDYLKTLCPDLHITRGEYDEDSRYPETKTLTIGQFKLGLCHGHQVIPWGDLDSLAMLQRQLDVDILVTGHTHQFTAYKHEGGVVINPGSASGAYSSMTYDVNPSFVLMDIDALRVVVYVYELIDGEVGRYTSPDEHAFFPANLPEPLLPPMKYPQVLRFYLLLCYVRENSFDIRQTLNFLFVDYITFSEDTTKRRSQKNKDFKDVEKASHIPFQDRSINCKPNWKIILVIIILGTLFTIFHPPAVYNTDHISNFISRPTFVNNWKGELDGTDPRYASFLNIDWNQITNVLENLNDKDTYQGVGLLNFNDSEIDHWKQLVPEACSPSPELCF*