Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0740360 | AET00054.1 | 98.884 | 448 | 5 | 0 | 1 | 448 | 501 | 948 | 0.0 | 930 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0740360 | sp|Q9SDG8|AGO4A_ORYSJ | 75.615 | 447 | 108 | 1 | 1 | 447 | 458 | 903 | 0.0 | 729 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0740360 | G7K2Y8 | 98.884 | 448 | 5 | 0 | 1 | 448 | 501 | 948 | 0.0 | 930 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0740360 | Msa0820620 | 0.822132 | 2.789745e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0740360 | MtrunA17_Chr5g0440631 | 98.884 | 448 | 5 | 0 | 1 | 448 | 461 | 908 | 0.0 | 929 |
| Msa0740360 | MtrunA17_Chr3g0118281 | 86.414 | 449 | 59 | 2 | 1 | 448 | 545 | 992 | 0.0 | 822 |
| Msa0740360 | MtrunA17_Chr5g0440641 | 87.723 | 448 | 49 | 3 | 1 | 448 | 451 | 892 | 0.0 | 808 |
| Msa0740360 | MtrunA17_Chr6g0467081 | 80.580 | 448 | 83 | 2 | 1 | 448 | 456 | 899 | 0.0 | 755 |
| Msa0740360 | MtrunA17_Chr3g0121101 | 63.596 | 456 | 152 | 4 | 1 | 447 | 459 | 909 | 0.0 | 592 |
| Msa0740360 | MtrunA17_Chr3g0080331 | 60.519 | 385 | 124 | 3 | 1 | 379 | 262 | 624 | 1.62e-167 | 485 |
| Msa0740360 | MtrunA17_Chr4g0027701 | 40.211 | 475 | 238 | 11 | 1 | 447 | 551 | 1007 | 1.66e-99 | 319 |
| Msa0740360 | MtrunA17_Chr2g0308031 | 40.043 | 467 | 245 | 12 | 4 | 447 | 460 | 914 | 5.43e-98 | 313 |
| Msa0740360 | MtrunA17_Chr6g0481121 | 40.741 | 486 | 233 | 14 | 4 | 447 | 636 | 1108 | 1.15e-97 | 316 |
| Msa0740360 | MtrunA17_Chr4g0027691 | 39.323 | 473 | 247 | 14 | 1 | 447 | 512 | 970 | 1.60e-97 | 313 |
| Msa0740360 | MtrunA17_Chr1g0204551 | 39.662 | 474 | 248 | 11 | 4 | 447 | 512 | 977 | 2.86e-97 | 313 |
| Msa0740360 | MtrunA17_Chr1g0166341 | 39.787 | 470 | 248 | 12 | 4 | 447 | 518 | 978 | 2.35e-96 | 310 |
| Msa0740360 | MtrunA17_Chr4g0062941 | 38.675 | 468 | 250 | 12 | 4 | 447 | 421 | 875 | 1.39e-93 | 301 |
| Msa0740360 | MtrunA17_Chr5g0418071 | 34.105 | 475 | 270 | 14 | 1 | 447 | 556 | 1015 | 3.99e-73 | 248 |
| Msa0740360 | MtrunA17_Chr4g0043461 | 36.983 | 411 | 220 | 12 | 9 | 400 | 529 | 919 | 2.53e-66 | 229 |
| Msa0740360 | MtrunA17_Chr2g0291701 | 33.115 | 459 | 259 | 13 | 16 | 448 | 593 | 1029 | 1.12e-62 | 219 |
| Msa0740360 | MtrunA17_Chr7g0268301 | 71.875 | 96 | 13 | 1 | 22 | 117 | 2 | 83 | 1.08e-37 | 133 |
| Msa0740360 | MtrunA17_Chr5g0448711 | 60.274 | 73 | 25 | 1 | 376 | 448 | 38 | 106 | 3.50e-19 | 84.0 |
| Msa0740360 | MtrunA17_Chr1g0164751 | 25.510 | 294 | 154 | 9 | 24 | 312 | 45 | 278 | 1.01e-14 | 74.3 |
| Msa0740360 | MtrunA17_Chr6g0464401 | 51.562 | 64 | 31 | 0 | 136 | 199 | 9 | 72 | 2.35e-13 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0740360 | AT2G27040.1 | 73.836 | 451 | 109 | 4 | 1 | 447 | 478 | 923 | 0.0 | 711 |
| Msa0740360 | AT2G27040.2 | 73.836 | 451 | 109 | 4 | 1 | 447 | 478 | 923 | 0.0 | 711 |
| Msa0740360 | AT5G21150.1 | 72.991 | 448 | 118 | 3 | 1 | 447 | 450 | 895 | 0.0 | 696 |
| Msa0740360 | AT2G32940.1 | 62.584 | 449 | 153 | 2 | 1 | 447 | 442 | 877 | 0.0 | 583 |
| Msa0740360 | AT5G21030.2 | 63.193 | 451 | 134 | 10 | 1 | 447 | 431 | 853 | 0.0 | 552 |
| Msa0740360 | AT5G21030.1 | 63.193 | 451 | 130 | 11 | 1 | 447 | 431 | 849 | 0.0 | 547 |
| Msa0740360 | AT2G27880.1 | 41.631 | 466 | 235 | 12 | 4 | 447 | 546 | 996 | 1.18e-103 | 330 |
| Msa0740360 | AT5G43810.4 | 39.916 | 476 | 239 | 13 | 4 | 447 | 527 | 987 | 1.07e-95 | 309 |
| Msa0740360 | AT5G43810.1 | 39.916 | 476 | 239 | 13 | 4 | 447 | 527 | 987 | 1.07e-95 | 309 |
| Msa0740360 | AT5G43810.2 | 39.916 | 476 | 239 | 13 | 4 | 447 | 527 | 987 | 1.07e-95 | 309 |
| Msa0740360 | AT5G43810.3 | 39.916 | 476 | 239 | 13 | 4 | 447 | 527 | 987 | 1.07e-95 | 309 |
| Msa0740360 | AT1G48410.1 | 40.042 | 477 | 233 | 12 | 11 | 447 | 584 | 1047 | 1.28e-94 | 307 |
| Msa0740360 | AT1G48410.3 | 40.042 | 477 | 233 | 12 | 11 | 447 | 586 | 1049 | 1.35e-94 | 307 |
| Msa0740360 | AT1G48410.2 | 40.042 | 477 | 233 | 12 | 11 | 447 | 586 | 1049 | 1.35e-94 | 307 |
| Msa0740360 | AT1G69440.1 | 36.180 | 445 | 253 | 13 | 17 | 447 | 562 | 989 | 1.83e-76 | 257 |
| Msa0740360 | AT1G31290.3 | 35.322 | 419 | 229 | 13 | 7 | 402 | 666 | 1065 | 8.49e-66 | 229 |
| Msa0740360 | AT1G31290.2 | 35.322 | 419 | 229 | 13 | 7 | 402 | 704 | 1103 | 9.55e-66 | 229 |
| Msa0740360 | AT1G31290.1 | 35.322 | 419 | 229 | 13 | 7 | 402 | 740 | 1139 | 1.07e-65 | 229 |
| Msa0740360 | AT1G31280.1 | 34.783 | 414 | 229 | 13 | 7 | 400 | 565 | 957 | 1.02e-64 | 225 |
Find 127 sgRNAs with CRISPR-Local
Find 214 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAAGCTCCTACTCTCATTT+TGG | 0.125101 | 5_1:+59252837 | Msa0740360:CDS |
| GAAGTTCCATCTCCCATTTC+TGG | 0.140891 | 5_1:-59251993 | None:intergenic |
| GGCAACAATCACCATAAATT+TGG | 0.147348 | 5_1:-59253865 | None:intergenic |
| GCAGACATTGTCCATCAATT+TGG | 0.191316 | 5_1:-59254789 | None:intergenic |
| TTTGACTTACAGTTGAAGTT+TGG | 0.257080 | 5_1:+59251950 | None:intergenic |
| AACTCATTATCATGTCCTTT+TGG | 0.270857 | 5_1:+59254350 | Msa0740360:CDS |
| TCATCCTCCTTATCTGATAC+TGG | 0.280966 | 5_1:-59253127 | None:intergenic |
| AGGAAGAACTCTGATCTTTA+TGG | 0.298034 | 5_1:+59252452 | Msa0740360:CDS |
| CAGACATTGTCCATCAATTT+GGG | 0.298038 | 5_1:-59254788 | None:intergenic |
| TGCAAAGTAAATAACAAGTT+TGG | 0.304203 | 5_1:-59254849 | None:intergenic |
| GCAACAATCACCATAAATTT+GGG | 0.306455 | 5_1:-59253864 | None:intergenic |
| ATTTGACAACCTCAATGATT+TGG | 0.317059 | 5_1:-59253745 | None:intergenic |
| GGCCCTTGATATCTAAATAT+AGG | 0.320167 | 5_1:+59253050 | Msa0740360:CDS |
| AAAGTGGAACCCCAAATTTA+TGG | 0.327746 | 5_1:+59253854 | Msa0740360:CDS |
| CATGTTCTTTGTTTGAGTTA+TGG | 0.334860 | 5_1:+59254817 | Msa0740360:exon |
| GCCCTTGATATCTAAATATA+GGG | 0.341173 | 5_1:+59253051 | Msa0740360:CDS |
| TCCAATCTGCTATGCCCATT+TGG | 0.342609 | 5_1:+59254658 | Msa0740360:CDS |
| GAGGTGGTGCACGCCTAAAC+TGG | 0.353469 | 5_1:-59252346 | None:intergenic |
| CCCACAGTTGCCCAAATTGA+TGG | 0.357282 | 5_1:+59254778 | Msa0740360:CDS |
| TTGACTTACAGTTGAAGTTT+GGG | 0.363727 | 5_1:+59251951 | None:intergenic |
| AACCTGTTAAAATAGAGAAA+TGG | 0.366755 | 5_1:+59252125 | Msa0740360:CDS |
| CTCAGTGTATTGCTCCTACC+AGG | 0.367615 | 5_1:+59252605 | Msa0740360:CDS |
| ACTTTGTGTGATGATTCTTC+TGG | 0.369516 | 5_1:-59253887 | None:intergenic |
| CTGAAAATTATGATATTGTC+TGG | 0.384283 | 5_1:-59253497 | None:intergenic |
| GCAAATTTCTTGATGAAAAG+TGG | 0.388890 | 5_1:+59253838 | Msa0740360:CDS |
| TGCCCTATATTTAGATATCA+AGG | 0.395995 | 5_1:-59253053 | None:intergenic |
| TTGAAGAAAACGGCCAGTTT+AGG | 0.399457 | 5_1:+59252333 | Msa0740360:CDS |
| GAAGACTTCAATCCCAGAAA+TGG | 0.400873 | 5_1:+59251980 | Msa0740360:CDS |
| AAGTTCCATCTCCCATTTCT+GGG | 0.401631 | 5_1:-59251992 | None:intergenic |
| ACCTGTTAAAATAGAGAAAT+GGG | 0.413540 | 5_1:+59252126 | Msa0740360:CDS |
| AGGAGGATGAAGGAATAATA+AGG | 0.420217 | 5_1:+59253140 | Msa0740360:CDS |
| CATGTAGAAATCATAATTCC+GGG | 0.422697 | 5_1:-59254070 | None:intergenic |
| TTTGATTGCTTTGAAGAAAA+CGG | 0.426012 | 5_1:+59252323 | Msa0740360:CDS |
| TATTATTACCGCAGCAATTG+AGG | 0.427660 | 5_1:-59252902 | None:intergenic |
| TCACCTGGAGGCACATTATC+CGG | 0.430461 | 5_1:-59253927 | None:intergenic |
| ACATGTAGAAATCATAATTC+CGG | 0.431069 | 5_1:-59254071 | None:intergenic |
| CAACCTTAGCACCCTGAGTT+CGG | 0.437681 | 5_1:-59253081 | None:intergenic |
| CTTTGTGTGATGATTCTTCT+GGG | 0.439440 | 5_1:-59253886 | None:intergenic |
| TGGATGAATGTTAATATTTG+TGG | 0.442336 | 5_1:+59255015 | Msa0740360:three_prime_UTR |
| GCAAAACATTGGTCAGATAC+TGG | 0.446295 | 5_1:-59252636 | None:intergenic |
| ATGACCTTTGCTGCAAGGTC+GGG | 0.446337 | 5_1:+59254922 | Msa0740360:three_prime_UTR |
| GTTCTTCCAGCCTGGATCTC+CGG | 0.448860 | 5_1:+59253908 | Msa0740360:CDS |
| GTTTAGGCGTGCACCACCTC+TGG | 0.450520 | 5_1:+59252349 | Msa0740360:CDS |
| GATGAACCTTTGCTGATGTC+TGG | 0.453254 | 5_1:+59254896 | Msa0740360:three_prime_UTR |
| ACAAGCTCTTGAAGATCATC+TGG | 0.455050 | 5_1:-59254390 | None:intergenic |
| CCACTTGAGAAGCAGCCAAA+TGG | 0.455401 | 5_1:-59254673 | None:intergenic |
| TCAGTTCAATGTTCAAAACT+TGG | 0.460356 | 5_1:-59253721 | None:intergenic |
| CACTTGAGAAGCAGCCAAAT+GGG | 0.461002 | 5_1:-59254672 | None:intergenic |
| TAGGGCATGCGTCCGAACTC+AGG | 0.467508 | 5_1:+59253069 | Msa0740360:CDS |
| CCATTTGGCTGCTTCTCAAG+TGG | 0.476182 | 5_1:+59254673 | Msa0740360:CDS |
| AAGTCCTCGCACATCACAAC+GGG | 0.476378 | 5_1:-59252167 | None:intergenic |
| TTCTACATGTGTGCTCATGC+TGG | 0.479915 | 5_1:+59254084 | Msa0740360:CDS |
| GTGGTTTGCTGAAAGATCCT+TGG | 0.481132 | 5_1:+59255034 | Msa0740360:three_prime_UTR |
| GGCACATTATCCGGAGATCC+AGG | 0.482891 | 5_1:-59253918 | None:intergenic |
| TTGGGCATGGATGTTTCTCA+TGG | 0.483692 | 5_1:+59252856 | Msa0740360:CDS |
| GATGACCTTTGCTGCAAGGT+CGG | 0.484760 | 5_1:+59254921 | Msa0740360:three_prime_UTR |
| AGCAGACAAAGGAGAAACTT+AGG | 0.485208 | 5_1:-59252422 | None:intergenic |
| CACGTTCAGTCTAAACTACC+AGG | 0.486546 | 5_1:+59252395 | Msa0740360:CDS |
| AGATCAGAGTTCTTCCTCTC+AGG | 0.495404 | 5_1:-59252446 | None:intergenic |
| CACACAAAGTTCTTCCAGCC+TGG | 0.495690 | 5_1:+59253900 | Msa0740360:CDS |
| AAGACTTCAATCCCAGAAAT+GGG | 0.497285 | 5_1:+59251981 | Msa0740360:CDS |
| CATTTGGCTGCTTCTCAAGT+GGG | 0.502960 | 5_1:+59254674 | Msa0740360:CDS |
| GCCAAATGGGCATAGCAGAT+TGG | 0.505414 | 5_1:-59254659 | None:intergenic |
| ATTATTACCGCAGCAATTGA+GGG | 0.505728 | 5_1:-59252901 | None:intergenic |
| ATGATAATGAGTTGGCCTAC+TGG | 0.506108 | 5_1:-59254340 | None:intergenic |
| GAGGGAATTTCAGTTTGTCC+AGG | 0.509678 | 5_1:-59252883 | None:intergenic |
| ATTTGAAATGTGAAGGTCCA+TGG | 0.512015 | 5_1:+59252548 | Msa0740360:intron |
| CAACAAGTATTCTCAAACCA+AGG | 0.518831 | 5_1:-59255051 | None:intergenic |
| AAAAGCCAATCTCATCCAAA+AGG | 0.525339 | 5_1:-59254365 | None:intergenic |
| CATTATCCGGAGATCCAGGC+TGG | 0.525864 | 5_1:-59253914 | None:intergenic |
| TCCATCAATTTGGGCAACTG+TGG | 0.526082 | 5_1:-59254779 | None:intergenic |
| AATTTGGGCAACTGTGGGAT+GGG | 0.530026 | 5_1:-59254773 | None:intergenic |
| TTTGAAACAATAGGGATGGA+TGG | 0.531152 | 5_1:-59252817 | None:intergenic |
| GGGCAACTGTGGGATGGGAG+AGG | 0.535595 | 5_1:-59254768 | None:intergenic |
| CAATTTGGGCAACTGTGGGA+TGG | 0.535890 | 5_1:-59254774 | None:intergenic |
| ATAAAATGTGGAGGAATGAA+AGG | 0.536134 | 5_1:+59252202 | Msa0740360:CDS |
| GAACCTTTGCTGATGTCTGG+TGG | 0.539236 | 5_1:+59254899 | Msa0740360:three_prime_UTR |
| AAAACCCGACCTTGCAGCAA+AGG | 0.539948 | 5_1:-59254926 | None:intergenic |
| CGTCCGAACTCAGGGTGCTA+AGG | 0.540192 | 5_1:+59253078 | Msa0740360:CDS |
| GTGATGTGCGAGGACTTGTA+AGG | 0.542125 | 5_1:+59252173 | Msa0740360:CDS |
| GATGTTTCTCATGGTTCACC+TGG | 0.546335 | 5_1:+59252865 | Msa0740360:CDS |
| ATTGATCTTCAGCAAAACAT+TGG | 0.550562 | 5_1:-59252647 | None:intergenic |
| GGTGGATGACCTTTGCTGCA+AGG | 0.552587 | 5_1:+59254917 | Msa0740360:three_prime_UTR |
| AGGAGAAACTTAGGAGCCCC+TGG | 0.553396 | 5_1:-59252413 | None:intergenic |
| TCATCTAGCCATGGTGGCAG+CGG | 0.556067 | 5_1:+59254731 | Msa0740360:CDS |
| TGAACTGAGCCAAATCATTG+AGG | 0.559983 | 5_1:+59253736 | Msa0740360:CDS |
| TCTCCGGATAATGTGCCTCC+AGG | 0.560273 | 5_1:+59253924 | Msa0740360:CDS |
| TATTACAGGTTGTAAGCTCA+AGG | 0.560495 | 5_1:+59253023 | Msa0740360:intron |
| AGTACTACTGCTATCTCTGT+TGG | 0.560841 | 5_1:+59254551 | Msa0740360:CDS |
| AAAAGGACATGATAATGAGT+TGG | 0.562000 | 5_1:-59254348 | None:intergenic |
| TATCACGACCGCTGCCACCA+TGG | 0.564045 | 5_1:-59254739 | None:intergenic |
| TCCTTTGTCTGCTTCCTGAG+AGG | 0.565365 | 5_1:+59252432 | Msa0740360:CDS |
| AGGGCATGCGTCCGAACTCA+GGG | 0.566072 | 5_1:+59253070 | Msa0740360:CDS |
| CAGATACTGGTCGTTCACCC+TGG | 0.568760 | 5_1:-59252623 | None:intergenic |
| TTACAGTTGAAGTTTGGGAA+TGG | 0.569594 | 5_1:+59251956 | None:intergenic |
| TTCTTGGCCACAGGTATCAG+AGG | 0.572451 | 5_1:+59254528 | Msa0740360:intron |
| GTTCAAGCCAGTATCAGATA+AGG | 0.579234 | 5_1:+59253120 | Msa0740360:CDS |
| TCAATCCCAGAAATGGGAGA+TGG | 0.583790 | 5_1:+59251987 | Msa0740360:CDS |
| CATAACTCAAACAAAGAACA+TGG | 0.585795 | 5_1:-59254816 | None:intergenic |
| GTATCAGATAAGGAGGATGA+AGG | 0.587451 | 5_1:+59253130 | Msa0740360:CDS |
| AGGTTGTAAGCTCAAGGCAA+TGG | 0.590895 | 5_1:+59253029 | Msa0740360:intron |
| TCCTCTCAGGAAGCAGACAA+AGG | 0.594522 | 5_1:-59252433 | None:intergenic |
| CGTGACACGTGCATGTCTGA+AGG | 0.596984 | 5_1:-59254972 | None:intergenic |
| GTAAGGGATCTGATAAAATG+TGG | 0.602054 | 5_1:+59252190 | Msa0740360:CDS |
| GCCCTATATTTAGATATCAA+GGG | 0.609362 | 5_1:-59253052 | None:intergenic |
| ACAACAAAATCTGTCATCCC+CGG | 0.609557 | 5_1:+59254052 | Msa0740360:CDS |
| CCATCAATTTGGGCAACTGT+GGG | 0.610368 | 5_1:-59254778 | None:intergenic |
| CAAGCCAGTATCAGATAAGG+AGG | 0.610634 | 5_1:+59253123 | Msa0740360:CDS |
| TCCATGCCCAAAATGAGAGT+AGG | 0.612941 | 5_1:-59252844 | None:intergenic |
| TTTGCTGAAGATCAATGCAA+AGG | 0.619675 | 5_1:+59252654 | Msa0740360:CDS |
| TCAGTGTATTGCTCCTACCA+GGG | 0.624276 | 5_1:+59252606 | Msa0740360:CDS |
| TCTGAAACTTCATCTAGCCA+TGG | 0.629684 | 5_1:+59254722 | Msa0740360:CDS |
| TAAAATAGAGAAATGGGCTG+TGG | 0.646383 | 5_1:+59252132 | Msa0740360:CDS |
| TCTGCCCGTTGTGATGTGCG+AGG | 0.647167 | 5_1:+59252163 | Msa0740360:CDS |
| CAACAATCACCATAAATTTG+GGG | 0.647316 | 5_1:-59253863 | None:intergenic |
| AGGGATCTGATAAAATGTGG+AGG | 0.659465 | 5_1:+59252193 | Msa0740360:CDS |
| TGAAATTCCCTCAATTGCTG+CGG | 0.660780 | 5_1:+59252894 | Msa0740360:CDS |
| ACGTTCAGTCTAAACTACCA+GGG | 0.661828 | 5_1:+59252396 | Msa0740360:CDS |
| CATCCACCAGACATCAGCAA+AGG | 0.661951 | 5_1:-59254902 | None:intergenic |
| TCTGTTCTCAGGGTACCAGT+AGG | 0.664166 | 5_1:+59254325 | Msa0740360:intron |
| CAAGTCCTCGCACATCACAA+CGG | 0.675833 | 5_1:-59252168 | None:intergenic |
| CGTTCAGTCTAAACTACCAG+GGG | 0.678350 | 5_1:+59252397 | Msa0740360:CDS |
| TACTGGTCGTTCACCCTGGT+AGG | 0.679221 | 5_1:-59252619 | None:intergenic |
| GAAACTTCATCTAGCCATGG+TGG | 0.683294 | 5_1:+59254725 | Msa0740360:CDS |
| TGATGTGCGAGGACTTGTAA+GGG | 0.687534 | 5_1:+59252174 | Msa0740360:CDS |
| ATGTAGAAATCATAATTCCG+GGG | 0.690302 | 5_1:-59254069 | None:intergenic |
| GAGATGGAACTTCAATAACA+AGG | 0.719372 | 5_1:+59252003 | Msa0740360:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTCAAATAAAATTTCATTA+AGG | - | chr5_1:59252536-59252555 | None:intergenic | 10.0% |
| !! | CAACTTTATATATAAAATAA+TGG | - | chr5_1:59253980-59253999 | None:intergenic | 10.0% |
| !!! | CATTATTTTATATATAAAGT+TGG | + | chr5_1:59253978-59253997 | Msa0740360:intron | 10.0% |
| !!! | AAATTTTATTTGAAATGTGA+AGG | + | chr5_1:59252541-59252560 | Msa0740360:intron | 15.0% |
| !! | ATATGGAAAATAATATTTCA+AGG | - | chr5_1:59253188-59253207 | None:intergenic | 15.0% |
| !!! | TATTATTTTCCATATCTATT+TGG | + | chr5_1:59253193-59253212 | Msa0740360:intron | 15.0% |
| !!! | ATTGATTTTTATAATAGTTC+TGG | + | chr5_1:59253464-59253483 | Msa0740360:CDS | 15.0% |
| !!! | TTGATTTTTATAATAGTTCT+GGG | + | chr5_1:59253465-59253484 | Msa0740360:CDS | 15.0% |
| !!! | ATCTTATTCTTTTAAATTCT+AGG | + | chr5_1:59253812-59253831 | Msa0740360:intron | 15.0% |
| !!! | TTTTTTTTTATCAGCTATTT+TGG | + | chr5_1:59254995-59255014 | Msa0740360:three_prime_UTR | 15.0% |
| !!! | ACTTATTTTATGTGTTATTT+TGG | + | chr5_1:59255095-59255114 | Msa0740360:three_prime_UTR | 15.0% |
| !!! | GATCTACATTTTTAATTTTC+TGG | + | chr5_1:59252042-59252061 | Msa0740360:intron | 20.0% |
| !! | GATAATATAAAAGAAACCAA+AGG | - | chr5_1:59252693-59252712 | None:intergenic | 20.0% |
| !!! | GCTATTAATGTTGTATTTTA+TGG | + | chr5_1:59252940-59252959 | Msa0740360:intron | 20.0% |
| !!! | AATGTTGTATTTTATGGTTT+CGG | + | chr5_1:59252946-59252965 | Msa0740360:intron | 20.0% |
| !! | GAAAATAATATTTCAAGGAA+AGG | - | chr5_1:59253183-59253202 | None:intergenic | 20.0% |
| !!! | ATGGATCTTTTTTCTTAAAA+AGG | - | chr5_1:59253279-59253298 | None:intergenic | 20.0% |
| !! | ATTACATATGTATAATCTTG+CGG | + | chr5_1:59253313-59253332 | Msa0740360:intron | 20.0% |
| !!! | TTGATGGCTTAATTTATTTT+TGG | + | chr5_1:59253410-59253429 | Msa0740360:intron | 20.0% |
| !! | TAAATATATGATTGCTTACT+TGG | + | chr5_1:59253781-59253800 | Msa0740360:intron | 20.0% |
| !! | ATGAAAAAAAATCAGTATAC+AGG | - | chr5_1:59254167-59254186 | None:intergenic | 20.0% |
| !!! | CTTACAAATTTTTTGTTTCT+TGG | + | chr5_1:59254512-59254531 | Msa0740360:intron | 20.0% |
| ! | AACCTGTTAAAATAGAGAAA+TGG | + | chr5_1:59252125-59252144 | Msa0740360:CDS | 25.0% |
| ! | ACCTGTTAAAATAGAGAAAT+GGG | + | chr5_1:59252126-59252145 | Msa0740360:CDS | 25.0% |
| ! | AAAAAGCAAACAAAACAGAA+TGG | - | chr5_1:59252284-59252303 | None:intergenic | 25.0% |
| !! | TTTTCTTCAAAGCAATCAAA+AGG | - | chr5_1:59252323-59252342 | None:intergenic | 25.0% |
| !!! | TTTGATTGCTTTGAAGAAAA+CGG | + | chr5_1:59252323-59252342 | Msa0740360:CDS | 25.0% |
| !! | TTACAAAAAGGTATATAGCA+TGG | - | chr5_1:59252497-59252516 | None:intergenic | 25.0% |
| !!! | CAAACAAATGGATTACAAAA+AGG | - | chr5_1:59252509-59252528 | None:intergenic | 25.0% |
| ! | CATTAAGGAAATCAAACAAA+TGG | - | chr5_1:59252521-59252540 | None:intergenic | 25.0% |
| !! | GATTTTATTCTTTTGTAGCT+TGG | + | chr5_1:59252760-59252779 | Msa0740360:intron | 25.0% |
| ! | TGTGAATGCTTAAATATTAC+AGG | + | chr5_1:59253009-59253028 | Msa0740360:intron | 25.0% |
| ! | AATATCTTTGAATACAGATG+TGG | - | chr5_1:59253220-59253239 | None:intergenic | 25.0% |
| ! | ACATCTGTATTCAAAGATAT+TGG | + | chr5_1:59253219-59253238 | Msa0740360:intron | 25.0% |
| ! | GTAATACAGCAATCTAAAAA+TGG | - | chr5_1:59253298-59253317 | None:intergenic | 25.0% |
| !!! | GCTTAATTTATTTTTGGAGT+TGG | + | chr5_1:59253416-59253435 | Msa0740360:intron | 25.0% |
| ! | CTGAAAATTATGATATTGTC+TGG | - | chr5_1:59253500-59253519 | None:intergenic | 25.0% |
| !! | CAGACAATATCATAATTTTC+AGG | + | chr5_1:59253498-59253517 | Msa0740360:CDS | 25.0% |
| ! | GAAATAGAATGGTAGAAAAT+TGG | - | chr5_1:59253535-59253554 | None:intergenic | 25.0% |
| ! | AATAAGTCGAAGAAATAGAA+TGG | - | chr5_1:59253546-59253565 | None:intergenic | 25.0% |
| ! | GTAAGCAATCATATATTTAC+AGG | - | chr5_1:59253780-59253799 | None:intergenic | 25.0% |
| !! | CAAAAAAAATATGGTTAGCT+AGG | - | chr5_1:59254011-59254030 | None:intergenic | 25.0% |
| !!! | CTAGCTAACCATATTTTTTT+TGG | + | chr5_1:59254009-59254028 | Msa0740360:intron | 25.0% |
| ! | CTGCAAAACCAAAAAAAATA+TGG | - | chr5_1:59254020-59254039 | None:intergenic | 25.0% |
| !!! | CATATTTTTTTTGGTTTTGC+AGG | + | chr5_1:59254018-59254037 | Msa0740360:intron | 25.0% |
| ! | ACATGTAGAAATCATAATTC+CGG | - | chr5_1:59254074-59254093 | None:intergenic | 25.0% |
| !!! | GTTAACCATTGATTTTCATT+TGG | + | chr5_1:59254233-59254252 | Msa0740360:intron | 25.0% |
| ! | CATGATAATTGCAAACAAAA+AGG | - | chr5_1:59254262-59254281 | None:intergenic | 25.0% |
| !!! | CTTTTTGTTTGCAATTATCA+TGG | + | chr5_1:59254260-59254279 | Msa0740360:intron | 25.0% |
| ! | CACAACTAAAATAAGTATCA+TGG | - | chr5_1:59254301-59254320 | None:intergenic | 25.0% |
| ! | TTTGTTTGAATTATGTTTCC+TGG | + | chr5_1:59254454-59254473 | Msa0740360:intron | 25.0% |
| ! | TGCAAAGTAAATAACAAGTT+TGG | - | chr5_1:59254852-59254871 | None:intergenic | 25.0% |
| ! | TGGATGAATGTTAATATTTG+TGG | + | chr5_1:59255015-59255034 | Msa0740360:three_prime_UTR | 25.0% |
| ATAAAATGTGGAGGAATGAA+AGG | + | chr5_1:59252202-59252221 | Msa0740360:CDS | 30.0% | |
| ATTTACTGACAAGCATAGAA+AGG | + | chr5_1:59252250-59252269 | Msa0740360:intron | 30.0% | |
| AAAAAGAATCTTGCAGAGTT+TGG | + | chr5_1:59252574-59252593 | Msa0740360:CDS | 30.0% | |
| ATTGATCTTCAGCAAAACAT+TGG | - | chr5_1:59252650-59252669 | None:intergenic | 30.0% | |
| ! | TTTATTCTTTTGTAGCTTGG+CGG | + | chr5_1:59252763-59252782 | Msa0740360:intron | 30.0% |
| !!! | TAGGAGCTTTTGAAACAATA+GGG | - | chr5_1:59252828-59252847 | None:intergenic | 30.0% |
| GCCCTTGATATCTAAATATA+GGG | + | chr5_1:59253051-59253070 | Msa0740360:CDS | 30.0% | |
| GCCCTATATTTAGATATCAA+GGG | - | chr5_1:59253055-59253074 | None:intergenic | 30.0% | |
| TGCCCTATATTTAGATATCA+AGG | - | chr5_1:59253056-59253075 | None:intergenic | 30.0% | |
| !! | GCAAACTTTGAAACAGTATA+GGG | - | chr5_1:59253366-59253385 | None:intergenic | 30.0% |
| !! | AGCAAACTTTGAAACAGTAT+AGG | - | chr5_1:59253367-59253386 | None:intergenic | 30.0% |
| !!! | AGTTGGTTTTATGATATGCA+GGG | + | chr5_1:59253433-59253452 | Msa0740360:intron | 30.0% |
| TTCAGTAAAGCACAATAGAA+GGG | - | chr5_1:59253646-59253665 | None:intergenic | 30.0% | |
| TCAGTTCAATGTTCAAAACT+TGG | - | chr5_1:59253724-59253743 | None:intergenic | 30.0% | |
| ATTTGACAACCTCAATGATT+TGG | - | chr5_1:59253748-59253767 | None:intergenic | 30.0% | |
| ATATATGATTGCTTACTTGG+TGG | + | chr5_1:59253784-59253803 | Msa0740360:intron | 30.0% | |
| TATATGATTGCTTACTTGGT+GGG | + | chr5_1:59253785-59253804 | Msa0740360:intron | 30.0% | |
| ! | CTTTTCATCAAGAAATTTGC+AGG | - | chr5_1:59253838-59253857 | None:intergenic | 30.0% |
| GCAAATTTCTTGATGAAAAG+TGG | + | chr5_1:59253838-59253857 | Msa0740360:CDS | 30.0% | |
| CAACAATCACCATAAATTTG+GGG | - | chr5_1:59253866-59253885 | None:intergenic | 30.0% | |
| GCAACAATCACCATAAATTT+GGG | - | chr5_1:59253867-59253886 | None:intergenic | 30.0% | |
| ATGTAGAAATCATAATTCCG+GGG | - | chr5_1:59254072-59254091 | None:intergenic | 30.0% | |
| CATGTAGAAATCATAATTCC+GGG | - | chr5_1:59254073-59254092 | None:intergenic | 30.0% | |
| GGATTCCAAATGAAAATCAA+TGG | - | chr5_1:59254241-59254260 | None:intergenic | 30.0% | |
| ! | AAAAGGACATGATAATGAGT+TGG | - | chr5_1:59254351-59254370 | None:intergenic | 30.0% |
| ! | AACTCATTATCATGTCCTTT+TGG | + | chr5_1:59254350-59254369 | Msa0740360:CDS | 30.0% |
| CATAACTCAAACAAAGAACA+TGG | - | chr5_1:59254819-59254838 | None:intergenic | 30.0% | |
| ! | CATGTTCTTTGTTTGAGTTA+TGG | + | chr5_1:59254817-59254836 | Msa0740360:exon | 30.0% |
| AAGACTTCAATCCCAGAAAT+GGG | + | chr5_1:59251981-59252000 | Msa0740360:CDS | 35.0% | |
| GAGATGGAACTTCAATAACA+AGG | + | chr5_1:59252003-59252022 | Msa0740360:CDS | 35.0% | |
| ! | TAACAGGTTGCACAATTTTC+TGG | - | chr5_1:59252114-59252133 | None:intergenic | 35.0% |
| !!! | GCCCATTTCTCTATTTTAAC+AGG | - | chr5_1:59252130-59252149 | None:intergenic | 35.0% |
| !! | TAAAATAGAGAAATGGGCTG+TGG | + | chr5_1:59252132-59252151 | Msa0740360:CDS | 35.0% |
| GTAAGGGATCTGATAAAATG+TGG | + | chr5_1:59252190-59252209 | Msa0740360:CDS | 35.0% | |
| !!! | ATTTTTTCAACTCTGACCAG+AGG | - | chr5_1:59252368-59252387 | None:intergenic | 35.0% |
| AGGAAGAACTCTGATCTTTA+TGG | + | chr5_1:59252452-59252471 | Msa0740360:CDS | 35.0% | |
| ! | ATTTGAAATGTGAAGGTCCA+TGG | + | chr5_1:59252548-59252567 | Msa0740360:intron | 35.0% |
| ! | GCAAGATTCTTTTTCTTCCA+TGG | - | chr5_1:59252568-59252587 | None:intergenic | 35.0% |
| TTTGCTGAAGATCAATGCAA+AGG | + | chr5_1:59252654-59252673 | Msa0740360:CDS | 35.0% | |
| ! | AGGTATTTTCACTCTTCCTT+TGG | + | chr5_1:59252674-59252693 | Msa0740360:intron | 35.0% |
| GTAGTACGAAAGGAAATTTC+TGG | - | chr5_1:59252732-59252751 | None:intergenic | 35.0% | |
| TCCTTTCGTACTACAATTGA+AGG | + | chr5_1:59252738-59252757 | Msa0740360:intron | 35.0% | |
| TCCTTCAATTGTAGTACGAA+AGG | - | chr5_1:59252742-59252761 | None:intergenic | 35.0% | |
| ! | TTTGAAACAATAGGGATGGA+TGG | - | chr5_1:59252820-59252839 | None:intergenic | 35.0% |
| !!! | AGCTTTTGAAACAATAGGGA+TGG | - | chr5_1:59252824-59252843 | None:intergenic | 35.0% |
| !!! | GTAGGAGCTTTTGAAACAAT+AGG | - | chr5_1:59252829-59252848 | None:intergenic | 35.0% |
| ! | AAAAGCTCCTACTCTCATTT+TGG | + | chr5_1:59252837-59252856 | Msa0740360:CDS | 35.0% |
| ! | AAAGCTCCTACTCTCATTTT+GGG | + | chr5_1:59252838-59252857 | Msa0740360:CDS | 35.0% |
| ATTATTACCGCAGCAATTGA+GGG | - | chr5_1:59252904-59252923 | None:intergenic | 35.0% | |
| TATTATTACCGCAGCAATTG+AGG | - | chr5_1:59252905-59252924 | None:intergenic | 35.0% | |
| TATTACAGGTTGTAAGCTCA+AGG | + | chr5_1:59253023-59253042 | Msa0740360:intron | 35.0% | |
| GGCCCTTGATATCTAAATAT+AGG | + | chr5_1:59253050-59253069 | Msa0740360:CDS | 35.0% | |
| AGGAGGATGAAGGAATAATA+AGG | + | chr5_1:59253140-59253159 | Msa0740360:CDS | 35.0% | |
| AGATGTGGACCAAATAGATA+TGG | - | chr5_1:59253205-59253224 | None:intergenic | 35.0% | |
| TTACAACAGTTCTCACTTGA+TGG | + | chr5_1:59253394-59253413 | Msa0740360:intron | 35.0% | |
| !!! | GAGTTGGTTTTATGATATGC+AGG | + | chr5_1:59253432-59253451 | Msa0740360:intron | 35.0% |
| GTTCAGTAAAGCACAATAGA+AGG | - | chr5_1:59253647-59253666 | None:intergenic | 35.0% | |
| !! | TCCTTTTTGCTGATTGATGT+AGG | + | chr5_1:59253672-59253691 | Msa0740360:intron | 35.0% |
| !! | CCTTTTTGCTGATTGATGTA+GGG | + | chr5_1:59253673-59253692 | Msa0740360:intron | 35.0% |
| AAAGTGGAACCCCAAATTTA+TGG | + | chr5_1:59253854-59253873 | Msa0740360:CDS | 35.0% | |
| GGCAACAATCACCATAAATT+TGG | - | chr5_1:59253868-59253887 | None:intergenic | 35.0% | |
| CTTTGTGTGATGATTCTTCT+GGG | - | chr5_1:59253889-59253908 | None:intergenic | 35.0% | |
| ACTTTGTGTGATGATTCTTC+TGG | - | chr5_1:59253890-59253909 | None:intergenic | 35.0% | |
| AGTTGTGAAAATCTGTTCTC+AGG | + | chr5_1:59254314-59254333 | Msa0740360:intron | 35.0% | |
| GTTGTGAAAATCTGTTCTCA+GGG | + | chr5_1:59254315-59254334 | Msa0740360:intron | 35.0% | |
| AAAAGCCAATCTCATCCAAA+AGG | - | chr5_1:59254368-59254387 | None:intergenic | 35.0% | |
| !!! | ATTTTTTGTTTCTTGGCCAC+AGG | + | chr5_1:59254519-59254538 | Msa0740360:intron | 35.0% |
| CAGACATTGTCCATCAATTT+GGG | - | chr5_1:59254791-59254810 | None:intergenic | 35.0% | |
| CAACAAGTATTCTCAAACCA+AGG | - | chr5_1:59255054-59255073 | None:intergenic | 35.0% | |
| GAAGACTTCAATCCCAGAAA+TGG | + | chr5_1:59251980-59251999 | Msa0740360:CDS | 40.0% | |
| AAGTTCCATCTCCCATTTCT+GGG | - | chr5_1:59251995-59252014 | None:intergenic | 40.0% | |
| AGGGATCTGATAAAATGTGG+AGG | + | chr5_1:59252193-59252212 | Msa0740360:CDS | 40.0% | |
| TTGAAGAAAACGGCCAGTTT+AGG | + | chr5_1:59252333-59252352 | Msa0740360:CDS | 40.0% | |
| ACGTTCAGTCTAAACTACCA+GGG | + | chr5_1:59252396-59252415 | Msa0740360:CDS | 40.0% | |
| AGCAGACAAAGGAGAAACTT+AGG | - | chr5_1:59252425-59252444 | None:intergenic | 40.0% | |
| GCAAAACATTGGTCAGATAC+TGG | - | chr5_1:59252639-59252658 | None:intergenic | 40.0% | |
| TGAAATTCCCTCAATTGCTG+CGG | + | chr5_1:59252894-59252913 | Msa0740360:CDS | 40.0% | |
| GTTCAAGCCAGTATCAGATA+AGG | + | chr5_1:59253120-59253139 | Msa0740360:CDS | 40.0% | |
| TCATCCTCCTTATCTGATAC+TGG | - | chr5_1:59253130-59253149 | None:intergenic | 40.0% | |
| GTATCAGATAAGGAGGATGA+AGG | + | chr5_1:59253130-59253149 | Msa0740360:CDS | 40.0% | |
| CCCTACATCAATCAGCAAAA+AGG | - | chr5_1:59253676-59253695 | None:intergenic | 40.0% | |
| ! | TTTGCTGATTGATGTAGGGA+TGG | + | chr5_1:59253677-59253696 | Msa0740360:intron | 40.0% |
| TGAACTGAGCCAAATCATTG+AGG | + | chr5_1:59253736-59253755 | Msa0740360:CDS | 40.0% | |
| ACAACAAAATCTGTCATCCC+CGG | + | chr5_1:59254052-59254071 | Msa0740360:CDS | 40.0% | |
| ! | ATGATAATGAGTTGGCCTAC+TGG | - | chr5_1:59254343-59254362 | None:intergenic | 40.0% |
| ! | CATGTCCTTTTGGATGAGAT+TGG | + | chr5_1:59254360-59254379 | Msa0740360:CDS | 40.0% |
| ACAAGCTCTTGAAGATCATC+TGG | - | chr5_1:59254393-59254412 | None:intergenic | 40.0% | |
| CTCTCTCTCATATGTGTAAG+TGG | + | chr5_1:59254416-59254435 | Msa0740360:intron | 40.0% | |
| TCATTGAGCATCTGAATACC+AGG | - | chr5_1:59254475-59254494 | None:intergenic | 40.0% | |
| AGTACTACTGCTATCTCTGT+TGG | + | chr5_1:59254551-59254570 | Msa0740360:CDS | 40.0% | |
| ! | TCTGAAACTTCATCTAGCCA+TGG | + | chr5_1:59254722-59254741 | Msa0740360:CDS | 40.0% |
| GCAGACATTGTCCATCAATT+TGG | - | chr5_1:59254792-59254811 | None:intergenic | 40.0% | |
| TCAATCCCAGAAATGGGAGA+TGG | + | chr5_1:59251987-59252006 | Msa0740360:CDS | 45.0% | |
| GAAGTTCCATCTCCCATTTC+TGG | - | chr5_1:59251996-59252015 | None:intergenic | 45.0% | |
| TGATGTGCGAGGACTTGTAA+GGG | + | chr5_1:59252174-59252193 | Msa0740360:CDS | 45.0% | |
| ! | TTTTCAACTCTGACCAGAGG+TGG | - | chr5_1:59252365-59252384 | None:intergenic | 45.0% |
| CACGTTCAGTCTAAACTACC+AGG | + | chr5_1:59252395-59252414 | Msa0740360:CDS | 45.0% | |
| CGTTCAGTCTAAACTACCAG+GGG | + | chr5_1:59252397-59252416 | Msa0740360:CDS | 45.0% | |
| AGATCAGAGTTCTTCCTCTC+AGG | - | chr5_1:59252449-59252468 | None:intergenic | 45.0% | |
| TCAGTGTATTGCTCCTACCA+GGG | + | chr5_1:59252606-59252625 | Msa0740360:CDS | 45.0% | |
| ! | GGCGGCATGAATTCTCTTTT+AGG | + | chr5_1:59252781-59252800 | Msa0740360:CDS | 45.0% |
| ! | TCCTACTCTCATTTTGGGCA+TGG | + | chr5_1:59252843-59252862 | Msa0740360:CDS | 45.0% |
| TCCATGCCCAAAATGAGAGT+AGG | - | chr5_1:59252847-59252866 | None:intergenic | 45.0% | |
| TTGGGCATGGATGTTTCTCA+TGG | + | chr5_1:59252856-59252875 | Msa0740360:CDS | 45.0% | |
| GATGTTTCTCATGGTTCACC+TGG | + | chr5_1:59252865-59252884 | Msa0740360:CDS | 45.0% | |
| GAGGGAATTTCAGTTTGTCC+AGG | - | chr5_1:59252886-59252905 | None:intergenic | 45.0% | |
| AGGTTGTAAGCTCAAGGCAA+TGG | + | chr5_1:59253029-59253048 | Msa0740360:intron | 45.0% | |
| CAAGCCAGTATCAGATAAGG+AGG | + | chr5_1:59253123-59253142 | Msa0740360:CDS | 45.0% | |
| !! | TGGTTTTGCAGGTACTGTTG+TGG | + | chr5_1:59254029-59254048 | Msa0740360:intron | 45.0% |
| TTCTACATGTGTGCTCATGC+TGG | + | chr5_1:59254084-59254103 | Msa0740360:CDS | 45.0% | |
| TAGTACTCCTCTGATACCTG+TGG | - | chr5_1:59254538-59254557 | None:intergenic | 45.0% | |
| TCCAATCTGCTATGCCCATT+TGG | + | chr5_1:59254658-59254677 | Msa0740360:CDS | 45.0% | |
| CACTTGAGAAGCAGCCAAAT+GGG | - | chr5_1:59254675-59254694 | None:intergenic | 45.0% | |
| CATTTGGCTGCTTCTCAAGT+GGG | + | chr5_1:59254674-59254693 | Msa0740360:CDS | 45.0% | |
| GAAACTTCATCTAGCCATGG+TGG | + | chr5_1:59254725-59254744 | Msa0740360:CDS | 45.0% | |
| AATTTGGGCAACTGTGGGAT+GGG | - | chr5_1:59254776-59254795 | None:intergenic | 45.0% | |
| CCATCAATTTGGGCAACTGT+GGG | - | chr5_1:59254781-59254800 | None:intergenic | 45.0% | |
| TCCATCAATTTGGGCAACTG+TGG | - | chr5_1:59254782-59254801 | None:intergenic | 45.0% | |
| GATGAACCTTTGCTGATGTC+TGG | + | chr5_1:59254896-59254915 | Msa0740360:three_prime_UTR | 45.0% | |
| !! | GTGGTTTGCTGAAAGATCCT+TGG | + | chr5_1:59255034-59255053 | Msa0740360:three_prime_UTR | 45.0% |
| AAGTCCTCGCACATCACAAC+GGG | - | chr5_1:59252170-59252189 | None:intergenic | 50.0% | |
| CAAGTCCTCGCACATCACAA+CGG | - | chr5_1:59252171-59252190 | None:intergenic | 50.0% | |
| GTGATGTGCGAGGACTTGTA+AGG | + | chr5_1:59252173-59252192 | Msa0740360:CDS | 50.0% | |
| TCCTTTGTCTGCTTCCTGAG+AGG | + | chr5_1:59252432-59252451 | Msa0740360:CDS | 50.0% | |
| TCCTCTCAGGAAGCAGACAA+AGG | - | chr5_1:59252436-59252455 | None:intergenic | 50.0% | |
| CTCAGTGTATTGCTCCTACC+AGG | + | chr5_1:59252605-59252624 | Msa0740360:CDS | 50.0% | |
| CAACCTTAGCACCCTGAGTT+CGG | - | chr5_1:59253084-59253103 | None:intergenic | 50.0% | |
| CACACAAAGTTCTTCCAGCC+TGG | + | chr5_1:59253900-59253919 | Msa0740360:CDS | 50.0% | |
| ! | TCACCTGGAGGCACATTATC+CGG | - | chr5_1:59253930-59253949 | None:intergenic | 50.0% |
| ! | TCTGTTCTCAGGGTACCAGT+AGG | + | chr5_1:59254325-59254344 | Msa0740360:intron | 50.0% |
| TTCTTGGCCACAGGTATCAG+AGG | + | chr5_1:59254528-59254547 | Msa0740360:intron | 50.0% | |
| GCCAAATGGGCATAGCAGAT+TGG | - | chr5_1:59254662-59254681 | None:intergenic | 50.0% | |
| CCACTTGAGAAGCAGCCAAA+TGG | - | chr5_1:59254676-59254695 | None:intergenic | 50.0% | |
| CCATTTGGCTGCTTCTCAAG+TGG | + | chr5_1:59254673-59254692 | Msa0740360:CDS | 50.0% | |
| CAATTTGGGCAACTGTGGGA+TGG | - | chr5_1:59254777-59254796 | None:intergenic | 50.0% | |
| CCCACAGTTGCCCAAATTGA+TGG | + | chr5_1:59254778-59254797 | Msa0740360:CDS | 50.0% | |
| GAACCTTTGCTGATGTCTGG+TGG | + | chr5_1:59254899-59254918 | Msa0740360:three_prime_UTR | 50.0% | |
| CATCCACCAGACATCAGCAA+AGG | - | chr5_1:59254905-59254924 | None:intergenic | 50.0% | |
| GATGACCTTTGCTGCAAGGT+CGG | + | chr5_1:59254921-59254940 | Msa0740360:three_prime_UTR | 50.0% | |
| ATGACCTTTGCTGCAAGGTC+GGG | + | chr5_1:59254922-59254941 | Msa0740360:three_prime_UTR | 50.0% | |
| AAAACCCGACCTTGCAGCAA+AGG | - | chr5_1:59254929-59254948 | None:intergenic | 50.0% | |
| AGGAGAAACTTAGGAGCCCC+TGG | - | chr5_1:59252416-59252435 | None:intergenic | 55.0% | |
| TACTGGTCGTTCACCCTGGT+AGG | - | chr5_1:59252622-59252641 | None:intergenic | 55.0% | |
| CAGATACTGGTCGTTCACCC+TGG | - | chr5_1:59252626-59252645 | None:intergenic | 55.0% | |
| GTTCTTCCAGCCTGGATCTC+CGG | + | chr5_1:59253908-59253927 | Msa0740360:CDS | 55.0% | |
| CATTATCCGGAGATCCAGGC+TGG | - | chr5_1:59253917-59253936 | None:intergenic | 55.0% | |
| GGCACATTATCCGGAGATCC+AGG | - | chr5_1:59253921-59253940 | None:intergenic | 55.0% | |
| TCTCCGGATAATGTGCCTCC+AGG | + | chr5_1:59253924-59253943 | Msa0740360:CDS | 55.0% | |
| !! | TTCTGAAGCAGCAGCTCACC+TGG | - | chr5_1:59253945-59253964 | None:intergenic | 55.0% |
| TCATCTAGCCATGGTGGCAG+CGG | + | chr5_1:59254731-59254750 | Msa0740360:CDS | 55.0% | |
| GGTGGATGACCTTTGCTGCA+AGG | + | chr5_1:59254917-59254936 | Msa0740360:three_prime_UTR | 55.0% | |
| CGTGACACGTGCATGTCTGA+AGG | - | chr5_1:59254975-59254994 | None:intergenic | 55.0% | |
| TCTGCCCGTTGTGATGTGCG+AGG | + | chr5_1:59252163-59252182 | Msa0740360:CDS | 60.0% | |
| GAGGTGGTGCACGCCTAAAC+TGG | - | chr5_1:59252349-59252368 | None:intergenic | 60.0% | |
| GTTTAGGCGTGCACCACCTC+TGG | + | chr5_1:59252349-59252368 | Msa0740360:CDS | 60.0% | |
| TAGGGCATGCGTCCGAACTC+AGG | + | chr5_1:59253069-59253088 | Msa0740360:CDS | 60.0% | |
| AGGGCATGCGTCCGAACTCA+GGG | + | chr5_1:59253070-59253089 | Msa0740360:CDS | 60.0% | |
| ! | CGTCCGAACTCAGGGTGCTA+AGG | + | chr5_1:59253078-59253097 | Msa0740360:CDS | 60.0% |
| TGAAGCAGCAGCTCACCTGG+AGG | - | chr5_1:59253942-59253961 | None:intergenic | 60.0% | |
| TATCACGACCGCTGCCACCA+TGG | - | chr5_1:59254742-59254761 | None:intergenic | 60.0% | |
| GGGCAACTGTGGGATGGGAG+AGG | - | chr5_1:59254771-59254790 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 59251962 | 59255139 | 59251962 | ID=Msa0740360;Name=Msa0740360 |
| chr5_1 | mRNA | 59251962 | 59255139 | 59251962 | ID=Msa0740360-mRNA-1;Parent=Msa0740360;Name=Msa0740360-mRNA-1;_AED=0.44;_eAED=0.44;_QI=0|1|0.92|1|1|1|13|307|448 |
| chr5_1 | exon | 59251962 | 59252024 | 59251962 | ID=Msa0740360-mRNA-1:exon:17023;Parent=Msa0740360-mRNA-1 |
| chr5_1 | exon | 59252115 | 59252228 | 59252115 | ID=Msa0740360-mRNA-1:exon:17024;Parent=Msa0740360-mRNA-1 |
| chr5_1 | exon | 59252308 | 59252473 | 59252308 | ID=Msa0740360-mRNA-1:exon:17025;Parent=Msa0740360-mRNA-1 |
| chr5_1 | exon | 59252563 | 59252675 | 59252563 | ID=Msa0740360-mRNA-1:exon:17026;Parent=Msa0740360-mRNA-1 |
| chr5_1 | exon | 59252778 | 59252915 | 59252778 | ID=Msa0740360-mRNA-1:exon:17027;Parent=Msa0740360-mRNA-1 |
| chr5_1 | exon | 59253031 | 59253161 | 59253031 | ID=Msa0740360-mRNA-1:exon:17028;Parent=Msa0740360-mRNA-1 |
| chr5_1 | exon | 59253454 | 59253519 | 59253454 | ID=Msa0740360-mRNA-1:exon:17029;Parent=Msa0740360-mRNA-1 |
| chr5_1 | exon | 59253694 | 59253757 | 59253694 | ID=Msa0740360-mRNA-1:exon:17030;Parent=Msa0740360-mRNA-1 |
| chr5_1 | exon | 59253834 | 59253945 | 59253834 | ID=Msa0740360-mRNA-1:exon:17031;Parent=Msa0740360-mRNA-1 |
| chr5_1 | exon | 59254040 | 59254113 | 59254040 | ID=Msa0740360-mRNA-1:exon:17032;Parent=Msa0740360-mRNA-1 |
| chr5_1 | exon | 59254336 | 59254430 | 59254336 | ID=Msa0740360-mRNA-1:exon:17033;Parent=Msa0740360-mRNA-1 |
| chr5_1 | exon | 59254541 | 59254572 | 59254541 | ID=Msa0740360-mRNA-1:exon:17034;Parent=Msa0740360-mRNA-1 |
| chr5_1 | exon | 59254654 | 59255139 | 59254654 | ID=Msa0740360-mRNA-1:exon:17035;Parent=Msa0740360-mRNA-1 |
| chr5_1 | CDS | 59251962 | 59252024 | 59251962 | ID=Msa0740360-mRNA-1:cds;Parent=Msa0740360-mRNA-1 |
| chr5_1 | CDS | 59252115 | 59252228 | 59252115 | ID=Msa0740360-mRNA-1:cds;Parent=Msa0740360-mRNA-1 |
| chr5_1 | CDS | 59252308 | 59252473 | 59252308 | ID=Msa0740360-mRNA-1:cds;Parent=Msa0740360-mRNA-1 |
| chr5_1 | CDS | 59252563 | 59252675 | 59252563 | ID=Msa0740360-mRNA-1:cds;Parent=Msa0740360-mRNA-1 |
| chr5_1 | CDS | 59252778 | 59252915 | 59252778 | ID=Msa0740360-mRNA-1:cds;Parent=Msa0740360-mRNA-1 |
| chr5_1 | CDS | 59253031 | 59253161 | 59253031 | ID=Msa0740360-mRNA-1:cds;Parent=Msa0740360-mRNA-1 |
| chr5_1 | CDS | 59253454 | 59253519 | 59253454 | ID=Msa0740360-mRNA-1:cds;Parent=Msa0740360-mRNA-1 |
| chr5_1 | CDS | 59253694 | 59253757 | 59253694 | ID=Msa0740360-mRNA-1:cds;Parent=Msa0740360-mRNA-1 |
| chr5_1 | CDS | 59253834 | 59253945 | 59253834 | ID=Msa0740360-mRNA-1:cds;Parent=Msa0740360-mRNA-1 |
| chr5_1 | CDS | 59254040 | 59254113 | 59254040 | ID=Msa0740360-mRNA-1:cds;Parent=Msa0740360-mRNA-1 |
| chr5_1 | CDS | 59254336 | 59254430 | 59254336 | ID=Msa0740360-mRNA-1:cds;Parent=Msa0740360-mRNA-1 |
| chr5_1 | CDS | 59254541 | 59254572 | 59254541 | ID=Msa0740360-mRNA-1:cds;Parent=Msa0740360-mRNA-1 |
| chr5_1 | CDS | 59254654 | 59254832 | 59254654 | ID=Msa0740360-mRNA-1:cds;Parent=Msa0740360-mRNA-1 |
| chr5_1 | three_prime_UTR | 59254833 | 59255139 | 59254833 | ID=Msa0740360-mRNA-1:three_prime_utr;Parent=Msa0740360-mRNA-1 |
| Gene Sequence |
| Protein sequence |
