AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0741180

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0741180 MtrunA17_Chr5g0442091 93.169 366 8 1 1 366 1 349 0.0 687
Msa0741180 MtrunA17_Chr4g0037541 63.636 319 97 3 1 319 1 300 9.68e-143 408
Msa0741180 MtrunA17_Chr2g0277341 62.422 322 103 2 2 323 12 315 1.82e-140 402
Msa0741180 MtrunA17_Chr8g0385101 55.096 363 141 6 3 364 1 342 4.41e-132 381
Msa0741180 MtrunA17_Chr3g0130971 54.545 363 140 6 4 364 3 342 1.75e-130 377
Msa0741180 MtrunA17_Chr8g0378181 59.365 315 110 2 1 315 1 297 2.82e-128 370
Msa0741180 MtrunA17_Chr3g0121551 54.986 351 132 3 1 351 1 325 3.55e-124 360
Msa0741180 MtrunA17_Chr5g0421601 95.522 67 3 0 300 366 118 184 2.57e-39 138
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0741180 AT1G71900.1 64.062 320 97 2 2 321 14 315 3.50e-148 422
Msa0741180 AT1G71900.2 64.968 314 92 2 2 315 14 309 1.16e-147 421
Msa0741180 AT1G34470.1 58.038 367 119 4 2 358 14 355 2.64e-146 419
Msa0741180 AT2G21120.1 62.069 319 103 2 3 321 1 301 1.67e-143 410
Msa0741180 AT4G38730.1 62.382 319 102 2 5 323 3 303 6.54e-142 405
Msa0741180 AT4G09640.1 56.452 372 134 3 2 363 14 367 1.08e-138 400
Msa0741180 AT4G13800.5 59.317 322 113 2 3 324 4 307 1.28e-122 357
Msa0741180 AT4G13800.1 59.317 322 113 2 3 324 4 307 1.28e-122 357
Msa0741180 AT4G13800.8 59.317 322 113 2 3 324 4 307 1.28e-122 357
Msa0741180 AT4G13800.10 59.317 322 113 2 3 324 4 307 1.28e-122 357
Msa0741180 AT3G23870.1 57.864 337 122 3 3 339 4 320 1.57e-117 344
Msa0741180 AT3G23870.3 57.864 337 122 3 3 339 4 320 1.57e-117 344
Msa0741180 AT3G23870.2 57.864 337 122 3 3 339 4 320 1.57e-117 344
Msa0741180 AT3G23870.4 57.864 337 122 3 3 339 4 320 1.57e-117 344
Msa0741180 AT4G13800.6 60.142 281 94 2 3 283 4 266 3.95e-105 310
Msa0741180 AT4G13800.2 60.142 281 94 2 3 283 4 266 3.95e-105 310
Msa0741180 AT3G23870.5 55.085 236 104 1 105 340 8 241 1.85e-88 267
Msa0741180 AT4G13800.9 56.693 254 92 2 3 256 4 239 4.74e-85 258
Msa0741180 AT4G13800.7 56.693 254 92 2 3 256 4 239 4.74e-85 258
Msa0741180 AT4G13800.4 56.693 254 92 2 3 256 4 239 4.74e-85 258
Msa0741180 AT4G13800.3 56.693 254 92 2 3 256 4 239 4.74e-85 258

Find 110 sgRNAs with CRISPR-Local

Find 591 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATCATTTGTATGATATTTA+AGG 0.097719 5_1:-60696978 None:intergenic
ATTAGTACTGGTCTTCTTTA+TGG 0.100334 5_1:+60691614 Msa0741180:CDS
ACATAGTAAAGGTCTTAATT+AGG 0.230023 5_1:+60696737 Msa0741180:three_prime_UTR
GTTTACAACACTTACAATAT+TGG 0.253214 5_1:+60696217 Msa0741180:CDS
CAGCTTCTACTTATGGTGTT+AGG 0.261659 5_1:+60689378 Msa0741180:CDS
AAGTAACGAGTCCCCATTTC+CGG 0.270372 5_1:-60696638 None:intergenic
CGAAGAGCAGCTTCTACTTA+TGG 0.293461 5_1:+60689371 Msa0741180:CDS
CTACACAAGCTTGGGATATT+AGG 0.300602 5_1:+60691385 Msa0741180:CDS
AAGACAAGATTTATGTTAGA+TGG 0.308492 5_1:+60696705 Msa0741180:exon
CATAGTAAAGGTCTTAATTA+GGG 0.322411 5_1:+60696738 Msa0741180:three_prime_UTR
GGAAACCTCCCATCATTCTA+TGG 0.322905 5_1:-60696840 None:intergenic
GGCTGTGTGATGTGCATTGC+TGG 0.328079 5_1:+60691406 Msa0741180:CDS
GCAAATGAATTATCTTAATA+AGG 0.345795 5_1:+60693321 Msa0741180:CDS
GGATCCTATCACATCTGTTC+TGG 0.346198 5_1:+60691462 Msa0741180:CDS
GTAGCCTCTCTTTCAGAATA+AGG 0.347068 5_1:-60691366 None:intergenic
TCACATCTGTTCTGGAGATA+TGG 0.347426 5_1:+60691470 Msa0741180:CDS
TACAGGCATTTGTTCGTTGA+TGG 0.351251 5_1:+60691683 Msa0741180:CDS
TTTCCGAAGCTATTCTTTCA+TGG 0.353351 5_1:+60696858 Msa0741180:three_prime_UTR
TGTTCTGGAGATATGGAATA+TGG 0.361007 5_1:+60691477 Msa0741180:CDS
GTCCGGCTTTATACCGGAAA+TGG 0.364120 5_1:+60696625 Msa0741180:CDS
GGGGAAGTTGAACCTTTCTC+TGG 0.368697 5_1:+60696758 Msa0741180:three_prime_UTR
ATTATCTATTGGAACCACTA+TGG 0.374691 5_1:+60689531 Msa0741180:CDS
TGGTGGTTATTATTATCTAT+TGG 0.385041 5_1:+60689520 Msa0741180:CDS
CTTGTGTTAGATAAGGTCAT+TGG 0.390659 5_1:+60697153 Msa0741180:three_prime_UTR
AGCTTCTACTTATGGTGTTA+GGG 0.400202 5_1:+60689379 Msa0741180:CDS
GTCCACATGTTGGTGCAAAA+TGG 0.400233 5_1:-60691641 None:intergenic
CTTAAATATCATACAAATGA+TGG 0.404549 5_1:+60696979 Msa0741180:three_prime_UTR
GGCTTTATTGTTGTACTCTC+TGG 0.408321 5_1:+60696411 Msa0741180:CDS
TTGGCTTCAAGTTTGTTCAT+TGG 0.409503 5_1:+60689317 Msa0741180:CDS
GTCTCTTGTTCAGTGATTGT+AGG 0.414325 5_1:+60691141 Msa0741180:CDS
CTGTCGAATGAGAATGTAAC+AGG 0.424243 5_1:+60689281 Msa0741180:CDS
GTGTAAAATGTTTACATTGA+CGG 0.424794 5_1:+60697019 Msa0741180:three_prime_UTR
TACCTGCAGCTGCATGGTAT+TGG 0.427904 5_1:-60696808 None:intergenic
TCCGGCTTTATACCGGAAAT+GGG 0.432544 5_1:+60696626 Msa0741180:CDS
TCATTCAGTTTCCCAGAGAA+AGG 0.435445 5_1:-60696770 None:intergenic
TTGTTAGAACAGTATACATA+TGG 0.436128 5_1:+60697280 Msa0741180:three_prime_UTR
CTTCGCCTACATTATCTGTC+CGG 0.448386 5_1:+60696608 Msa0741180:CDS
CATTTGCATGACGACGCATA+TGG 0.451964 5_1:-60693305 None:intergenic
GTAAACATGACATAGTATAT+AGG 0.454607 5_1:-60696200 None:intergenic
TGACTATACCTCTAAAAGAA+TGG 0.455862 5_1:-60696473 None:intergenic
TACAAATGATGGTTTGTGAT+TGG 0.457526 5_1:+60696990 Msa0741180:three_prime_UTR
AAATGGGGACTCGTTACTTA+AGG 0.466808 5_1:+60696642 Msa0741180:CDS
TGTTATTCACGCTCCTAAAG+AGG 0.469561 5_1:+60691441 Msa0741180:CDS
ACAGGCATTTGTTCGTTGAT+GGG 0.472317 5_1:+60691684 Msa0741180:CDS
AAAGAGAGGCTACACAAGCT+TGG 0.474294 5_1:+60691376 Msa0741180:CDS
TCTACTTATGGTGTTAGGGC+TGG 0.477637 5_1:+60689383 Msa0741180:CDS
TGTTGGGTCTGTATTAGTAC+TGG 0.480988 5_1:+60691602 Msa0741180:CDS
GATGTGATAGGATCCTCTTT+AGG 0.489032 5_1:-60691454 None:intergenic
AAGAGAGGCTACACAAGCTT+GGG 0.489256 5_1:+60691377 Msa0741180:CDS
TTGTTCAGTGATTGTAGGAG+AGG 0.490221 5_1:+60691146 Msa0741180:CDS
AATCCATGAAAGAATAGCTT+CGG 0.490859 5_1:-60696861 None:intergenic
ACCAATGTCCTAGTTTATAC+AGG 0.491498 5_1:+60691666 Msa0741180:CDS
TTATCTGTCCGGCTTTATAC+CGG 0.492952 5_1:+60696619 Msa0741180:CDS
GGCCAGTGTAATAATGTTCA+AGG 0.493910 5_1:+60696238 Msa0741180:CDS
TCAGTTGCTTGTGTTAGATA+AGG 0.494218 5_1:+60697146 Msa0741180:three_prime_UTR
ACAGATAATGTAGGCGAAGA+AGG 0.506215 5_1:-60696604 None:intergenic
AGACACGATTGCCGTGTTGA+AGG 0.510435 5_1:-60696177 None:intergenic
ATCTCCAGAACAGATGTGAT+AGG 0.510534 5_1:-60691466 None:intergenic
GTAATGTAACCATAGAATGA+TGG 0.511764 5_1:+60696831 Msa0741180:three_prime_UTR
ATGGCTTCTCTCGAAGTCCT+TGG 0.513416 5_1:-60696454 None:intergenic
CTTCTTGAGCACATATCCTC+AGG 0.515556 5_1:-60696685 None:intergenic
CAGCATTCCTAGCATATGTT+GGG 0.518958 5_1:+60691586 Msa0741180:intron
GTGATGAGCGTCAAAGCACT+TGG 0.521136 5_1:+60693205 Msa0741180:CDS
TGGAATATGGCTACTCAACC+AGG 0.522439 5_1:+60691490 Msa0741180:CDS
GCCTGTATAAACTAGGACAT+TGG 0.522841 5_1:-60691667 None:intergenic
TGTCAATCAATCATAACCAT+TGG 0.523291 5_1:+60696922 Msa0741180:three_prime_UTR
GCAGCATTCCTAGCATATGT+TGG 0.523980 5_1:+60691585 Msa0741180:intron
TACCAATACCATGCAGCTGC+AGG 0.525833 5_1:+60696806 Msa0741180:three_prime_UTR
ACTATTATGTCAGAAATATG+TGG 0.525899 5_1:+60696390 Msa0741180:CDS
TGCATGGTATTGGTATATGA+TGG 0.529108 5_1:-60696798 None:intergenic
TGGAACCACTATGGTGGGTA+GGG 0.529900 5_1:+60689540 Msa0741180:CDS
TAGCATACAAGATTCATTTG+TGG 0.531026 5_1:+60697350 Msa0741180:three_prime_UTR
GCTGTTCTAGTTACCCCTCT+CGG 0.535516 5_1:+60691201 Msa0741180:CDS
AACAGGTCTCATTCTAGCGT+TGG 0.535939 5_1:+60689298 Msa0741180:CDS
GAGGAACCTTGTTTGTCTGT+CGG 0.538970 5_1:+60689194 Msa0741180:five_prime_UTR
TTACATTAATGAAGAAAGGG+TGG 0.540570 5_1:+60697245 Msa0741180:three_prime_UTR
CCCCATTTCCGGTATAAAGC+CGG 0.543216 5_1:-60696627 None:intergenic
TAATGTAACCATAGAATGAT+GGG 0.546490 5_1:+60696832 Msa0741180:three_prime_UTR
ATCATCCCTACCCACCATAG+TGG 0.550009 5_1:-60689545 None:intergenic
TGACATCAAACCTAGGAAGA+AGG 0.551656 5_1:-60689583 None:intergenic
TACCTTGAACATTATTACAC+TGG 0.553788 5_1:-60696240 None:intergenic
GGGAAGTTGAACCTTTCTCT+GGG 0.555737 5_1:+60696759 Msa0741180:three_prime_UTR
ATCTATTGGAACCACTATGG+TGG 0.559041 5_1:+60689534 Msa0741180:CDS
AGAGGGGTAACTAGAACAGC+AGG 0.563929 5_1:-60691198 None:intergenic
TTGGAACCACTATGGTGGGT+AGG 0.568714 5_1:+60689539 Msa0741180:CDS
ACTTAATTTACTTACAGAGA+GGG 0.571556 5_1:-60691709 None:intergenic
CTGACCTTATTCTGAAAGAG+AGG 0.576221 5_1:+60691362 Msa0741180:CDS
ATACAGACCCAACATATGCT+AGG 0.592024 5_1:-60691593 None:intergenic
TTATGCTTGCAGGATTGGGA+TGG 0.592514 5_1:+60696354 Msa0741180:intron
CATTACTACCTGCAGCTGCA+TGG 0.597952 5_1:-60696814 None:intergenic
AACAAATGCCTGTATAAACT+AGG 0.598157 5_1:-60691674 None:intergenic
TAATACTTAATGCACCGAGA+GGG 0.601192 5_1:-60691215 None:intergenic
GGCACTTGACACCTTCAACA+CGG 0.609093 5_1:+60696166 Msa0741180:intron
AGTTAGTTTATCCACAGACA+TGG 0.613016 5_1:+60693263 Msa0741180:CDS
AATACTTAATGCACCGAGAG+GGG 0.613447 5_1:-60691214 None:intergenic
AGTTTCATTATCAAGAAACA+AGG 0.615355 5_1:+60689344 Msa0741180:CDS
TCTATTGGAACCACTATGGT+GGG 0.617869 5_1:+60689535 Msa0741180:CDS
TAAAGCCGGACAGATAATGT+AGG 0.620082 5_1:-60696613 None:intergenic
GTGCATTAAGTATTATTGTG+AGG 0.632621 5_1:+60691223 Msa0741180:CDS
GCATGGTATTGGTATATGAT+GGG 0.632702 5_1:-60696797 None:intergenic
TTATCTAACACAAGCAACTG+AGG 0.641563 5_1:-60697144 None:intergenic
ATAGTAAAGGTCTTAATTAG+GGG 0.647173 5_1:+60696739 Msa0741180:three_prime_UTR
CCGGCTTTATACCGGAAATG+GGG 0.664480 5_1:+60696627 Msa0741180:CDS
TGAAGAGAACGAATCTCCTG+AGG 0.670385 5_1:+60696669 Msa0741180:CDS
AATAATGTTACATCTGACCA+AGG 0.680906 5_1:+60696437 Msa0741180:CDS
TGAGCTCCGACAGACAAACA+AGG 0.681936 5_1:-60689200 None:intergenic
ATGATGACGATGATGATCTG+AGG 0.701667 5_1:+60689175 Msa0741180:five_prime_UTR
ACATTGGTATGTCCACATGT+TGG 0.713281 5_1:-60691651 None:intergenic
TGTAACCATAGAATGATGGG+AGG 0.716967 5_1:+60696835 Msa0741180:three_prime_UTR
ATAATACTTAATGCACCGAG+AGG 0.741263 5_1:-60691216 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGTCAATTATTTTTTTATTT+CGG + chr5_1:60689601-60689620 Msa0741180:intron 10.0%
!!! TTTTTAATTTTTAACGATAA+AGG + chr5_1:60690960-60690979 Msa0741180:intron 10.0%
!! ATTAGATAATAAATAGTTAA+TGG - chr5_1:60692098-60692117 None:intergenic 10.0%
!! ATTAAATAGAACAAAAAATT+TGG - chr5_1:60692929-60692948 None:intergenic 10.0%
!! ATATACTAACAAATAATAAT+TGG - chr5_1:60693377-60693396 None:intergenic 10.0%
!!! TTTTTTTTTAAAATTCTTCA+AGG + chr5_1:60693909-60693928 Msa0741180:intron 10.0%
!!! GTCAATTATTTTTTTATTTC+GGG + chr5_1:60689602-60689621 Msa0741180:intron 15.0%
!! AATTAATTTCATACATTCAT+GGG - chr5_1:60689668-60689687 None:intergenic 15.0%
!! TAAATTAAGTTAAAGACTAA+AGG - chr5_1:60690380-60690399 None:intergenic 15.0%
!! CTTAATTTAATGTATCAAAA+AGG + chr5_1:60690391-60690410 Msa0741180:intron 15.0%
!!! CTTTATTTGAATTTTCAAAT+AGG - chr5_1:60691014-60691033 None:intergenic 15.0%
!! AGTATAGATCAATTATTAAA+GGG - chr5_1:60691931-60691950 None:intergenic 15.0%
!! AAGTATAGATCAATTATTAA+AGG - chr5_1:60691932-60691951 None:intergenic 15.0%
!! ATTTGGTTGTTATAATAATA+AGG - chr5_1:60692829-60692848 None:intergenic 15.0%
!! AATTCAAAGAAAAACTAATT+TGG - chr5_1:60692846-60692865 None:intergenic 15.0%
!! AAAAGACAAAAAGATTATTA+AGG + chr5_1:60694730-60694749 Msa0741180:intron 15.0%
!!! TATTTCTAATTGCATATTTA+CGG + chr5_1:60695383-60695402 Msa0741180:intron 15.0%
!! GTATTAATGTGAAAAATATT+GGG - chr5_1:60695426-60695445 None:intergenic 15.0%
!! TAACATGATTATAATATTTC+AGG + chr5_1:60695977-60695996 Msa0741180:intron 15.0%
!! TAACATGATTATAATATTTC+AGG + chr5_1:60695977-60695996 Msa0741180:intron 15.0%
!! TAACATGATTATAATATTTC+AGG + chr5_1:60695977-60695996 Msa0741180:intron 15.0%
!! TAGTCAAATTTAATCATATA+CGG + chr5_1:60696490-60696509 Msa0741180:intron 15.0%
!!! ATTTTTACATTAATGAAGAA+AGG + chr5_1:60697241-60697260 Msa0741180:three_prime_UTR 15.0%
!!! TTTTTACATTAATGAAGAAA+GGG + chr5_1:60697242-60697261 Msa0741180:three_prime_UTR 15.0%
!!! TTTGGCTTTTATAATATTTA+TGG + chr5_1:60697312-60697331 Msa0741180:three_prime_UTR 15.0%
!!! TTGTTGATTATTATTATGCA+TGG + chr5_1:60689465-60689484 Msa0741180:intron 20.0%
!!! ATTTATTATTTTGTAGGTGT+TGG + chr5_1:60689500-60689519 Msa0741180:intron 20.0%
!! CAATTAATTTCATACATTCA+TGG - chr5_1:60689669-60689688 None:intergenic 20.0%
!! CATGAATGTATGAAATTAAT+TGG + chr5_1:60689667-60689686 Msa0741180:intron 20.0%
!!! TAAGTTGATAACAGAAATTT+AGG - chr5_1:60689883-60689902 None:intergenic 20.0%
!! ATATCTAAATTACGTCATAA+TGG + chr5_1:60690585-60690604 Msa0741180:intron 20.0%
!! GAAAATTCAAATAAAGTCAA+AGG + chr5_1:60691018-60691037 Msa0741180:intron 20.0%
!!! TTTTTTCAATGATGTTTTCA+TGG + chr5_1:60691318-60691337 Msa0741180:intron 20.0%
!!! TTTTCAAATGCCATATATTA+TGG + chr5_1:60691535-60691554 Msa0741180:intron 20.0%
!! TATCAAAGAACCATAATATA+TGG - chr5_1:60691548-60691567 None:intergenic 20.0%
!! ATATTATGGTTCTTTGATAA+CGG + chr5_1:60691549-60691568 Msa0741180:intron 20.0%
!! AAGGAATAATTGCTAAATTT+GGG - chr5_1:60691800-60691819 None:intergenic 20.0%
!!! TTTTAAACTAAATAACTCTG+AGG - chr5_1:60691968-60691987 None:intergenic 20.0%
!! TTGATATGTACAAATAATCT+TGG - chr5_1:60692022-60692041 None:intergenic 20.0%
!! TCTCTGTAATAAATAGTTAA+TGG + chr5_1:60692132-60692151 Msa0741180:intron 20.0%
!! TTTACAACTAATAGAGAATT+AGG + chr5_1:60692482-60692501 Msa0741180:intron 20.0%
!! TTACAACTAATAGAGAATTA+GGG + chr5_1:60692483-60692502 Msa0741180:intron 20.0%
!! TTCTTAAAATTCCAACAATT+AGG - chr5_1:60692526-60692545 None:intergenic 20.0%
!!! TGAATCATAAACTATCATTT+TGG + chr5_1:60692762-60692781 Msa0741180:intron 20.0%
!! GCAAATGAATTATCTTAATA+AGG + chr5_1:60693321-60693340 Msa0741180:CDS 20.0%
!! ACTAACAAATAATAATTGGA+AGG - chr5_1:60693373-60693392 None:intergenic 20.0%
!! TCACAAAAACAAAACAAAAA+AGG - chr5_1:60693802-60693821 None:intergenic 20.0%
!! TTTAATCTTTCCTATTGTTT+AGG + chr5_1:60694474-60694493 Msa0741180:intron 20.0%
!!! ATAACAAATGAGTTTTACTT+TGG + chr5_1:60694757-60694776 Msa0741180:intron 20.0%
!!! TAACAAATGAGTTTTACTTT+GGG + chr5_1:60694758-60694777 Msa0741180:intron 20.0%
!! GGTATTAATGTGAAAAATAT+TGG - chr5_1:60695427-60695446 None:intergenic 20.0%
!! GAAATTATGATTACTTGTAA+GGG - chr5_1:60695583-60695602 None:intergenic 20.0%
!! AGAAATTATGATTACTTGTA+AGG - chr5_1:60695584-60695603 None:intergenic 20.0%
!! TTCAATGGAAAAATAAAACA+AGG + chr5_1:60695888-60695907 Msa0741180:intron 20.0%
!! TTAGTAAAGCATAATTGATT+TGG - chr5_1:60695960-60695979 None:intergenic 20.0%
!!! CATAATTGATTTGGATATAT+AGG - chr5_1:60696035-60696054 None:intergenic 20.0%
!! TTAGTAAAGCATAATTGATT+TGG - chr5_1:60695960-60695979 None:intergenic 20.0%
!!! CATAATTGATTTGGATATAT+AGG - chr5_1:60696035-60696054 None:intergenic 20.0%
!! TTAGTAAAGCATAATTGATT+TGG - chr5_1:60695960-60695979 None:intergenic 20.0%
!! ACATAATAGTTGAAAAACTT+TGG - chr5_1:60696380-60696399 None:intergenic 20.0%
!! ATATGAAAGAATGTAAAGTA+TGG - chr5_1:60696551-60696570 None:intergenic 20.0%
!! GTAAAAAATATTTACACTCT+TGG - chr5_1:60696900-60696919 None:intergenic 20.0%
!!! CAATATTTTTATTGATCCAA+TGG - chr5_1:60696941-60696960 None:intergenic 20.0%
!! CATCATTTGTATGATATTTA+AGG - chr5_1:60696981-60697000 None:intergenic 20.0%
!! CTTAAATATCATACAAATGA+TGG + chr5_1:60696979-60696998 Msa0741180:three_prime_UTR 20.0%
!!! TTCTTTTATTATCAGCATAT+CGG + chr5_1:60697061-60697080 Msa0741180:three_prime_UTR 20.0%
!!! ATATTTATGGTTTTGCAATT+TGG + chr5_1:60697325-60697344 Msa0741180:three_prime_UTR 20.0%
!!! AAGTAACGATTTTTTCGAAA+TGG + chr5_1:60689256-60689275 Msa0741180:exon 25.0%
!!! AGTAACGATTTTTTCGAAAT+GGG + chr5_1:60689257-60689276 Msa0741180:exon 25.0%
! AGTTTCATTATCAAGAAACA+AGG + chr5_1:60689344-60689363 Msa0741180:CDS 25.0%
!!! TTTTTTCAGAATTCAGAAGA+AGG - chr5_1:60689431-60689450 None:intergenic 25.0%
! TGGTGGTTATTATTATCTAT+TGG + chr5_1:60689520-60689539 Msa0741180:CDS 25.0%
! AAATAATTGACATCAAACCT+AGG - chr5_1:60689593-60689612 None:intergenic 25.0%
!! CTCTTTCAAAACTAACTTTT+AGG - chr5_1:60689727-60689746 None:intergenic 25.0%
!!! AAAAGTTAGTTTTGAAAGAG+AGG + chr5_1:60689727-60689746 Msa0741180:intron 25.0%
!!! AAAGTTAGTTTTGAAAGAGA+GGG + chr5_1:60689728-60689747 Msa0741180:intron 25.0%
! TCTGTTATCAACTTAAAGTT+AGG + chr5_1:60689888-60689907 Msa0741180:intron 25.0%
! TTAAAGTTAGGTTTGAATCT+AGG + chr5_1:60689900-60689919 Msa0741180:intron 25.0%
! GAGAATGTATAAAAAAACAG+AGG + chr5_1:60690029-60690048 Msa0741180:intron 25.0%
!!! GGTTTTTTTGTTTGTTACAT+TGG - chr5_1:60690115-60690134 None:intergenic 25.0%
!!! GTTCTCTGTTTTTTATCATA+TGG - chr5_1:60690136-60690155 None:intergenic 25.0%
! AGAACATGTAATGAATGAAA+GGG + chr5_1:60690151-60690170 Msa0741180:intron 25.0%
!! TTTAGACGGTTCAAATTTTA+AGG + chr5_1:60690201-60690220 Msa0741180:intron 25.0%
!! TTAGACGGTTCAAATTTTAA+GGG + chr5_1:60690202-60690221 Msa0741180:intron 25.0%
!!! GAATCTGCAAATTTTAGTTT+AGG + chr5_1:60690336-60690355 Msa0741180:intron 25.0%
! CCTATATGAAAAATGAAGTT+TGG - chr5_1:60690500-60690519 None:intergenic 25.0%
!!! CCAAACTTCATTTTTCATAT+AGG + chr5_1:60690497-60690516 Msa0741180:intron 25.0%
! CTTAGATAAAAGCTAAAAAG+AGG - chr5_1:60690646-60690665 None:intergenic 25.0%
!! TGGTCAATATTTGATAACAT+TGG - chr5_1:60690759-60690778 None:intergenic 25.0%
! ATGTTATCAAATATTGACCA+TGG + chr5_1:60690759-60690778 Msa0741180:intron 25.0%
! ACACAAATTTGCAACATTAA+TGG + chr5_1:60690902-60690921 Msa0741180:intron 25.0%
! ACTTGACACGAAAAAATTTA+AGG + chr5_1:60690987-60691006 Msa0741180:intron 25.0%
! GAAATCAGAAACACAAAAAT+GGG - chr5_1:60691099-60691118 None:intergenic 25.0%
! AGAAATCAGAAACACAAAAA+TGG - chr5_1:60691100-60691119 None:intergenic 25.0%
! TCAATTGAGAAAGAAAACTA+AGG - chr5_1:60691258-60691277 None:intergenic 25.0%
! TATGGCATTTGAAAAAGAAA+AGG - chr5_1:60691530-60691549 None:intergenic 25.0%
!! TATTATGGTTCTTTGATAAC+GGG + chr5_1:60691550-60691569 Msa0741180:intron 25.0%
! ACTTAATTTACTTACAGAGA+GGG - chr5_1:60691712-60691731 None:intergenic 25.0%
! TACTTAATTTACTTACAGAG+AGG - chr5_1:60691713-60691732 None:intergenic 25.0%
! GAAGGAATAATTGCTAAATT+TGG - chr5_1:60691801-60691820 None:intergenic 25.0%
!!! TGTAATAGTTGACTTTTTGA+AGG - chr5_1:60691819-60691838 None:intergenic 25.0%
! AAGTTGTGTATTTAATGCAT+TGG - chr5_1:60691846-60691865 None:intergenic 25.0%
! TAAAATTATCTCGCAAAATC+TGG + chr5_1:60692318-60692337 Msa0741180:intron 25.0%
! CTTTATTCATGTGAATTTGT+TGG + chr5_1:60692452-60692471 Msa0741180:intron 25.0%
! CTCTATTAGTTGTAAATAAG+TGG - chr5_1:60692478-60692497 None:intergenic 25.0%
! TAATCCAATATCAATTACCA+CGG + chr5_1:60692623-60692642 Msa0741180:intron 25.0%
! AAGAGAACATTAACTACTAT+AGG + chr5_1:60692688-60692707 Msa0741180:intron 25.0%
! TAATTGGTACTCAAAAATCA+CGG + chr5_1:60692963-60692982 Msa0741180:intron 25.0%
!!! TCTTTGAAGTTAACTTTTGA+AGG + chr5_1:60693232-60693251 Msa0741180:CDS 25.0%
!!! CTTTGAAGTTAACTTTTGAA+GGG + chr5_1:60693233-60693252 Msa0741180:CDS 25.0%
! AAATAATAATTGGAAGGATG+GGG - chr5_1:60693367-60693386 None:intergenic 25.0%
! CAAATAATAATTGGAAGGAT+GGG - chr5_1:60693368-60693387 None:intergenic 25.0%
! ACAAATAATAATTGGAAGGA+TGG - chr5_1:60693369-60693388 None:intergenic 25.0%
! AAGAACAAAGAGAAAAAACT+AGG + chr5_1:60693501-60693520 Msa0741180:intron 25.0%
! ACTAATGTGTATTTCTCAAA+GGG - chr5_1:60693875-60693894 None:intergenic 25.0%
! AACTAATGTGTATTTCTCAA+AGG - chr5_1:60693876-60693895 None:intergenic 25.0%
! TTAAAATTCTTCAAGGTACA+TGG + chr5_1:60693916-60693935 Msa0741180:intron 25.0%
! AACAAGATTGAAGATAGTTT+AGG + chr5_1:60693947-60693966 Msa0741180:intron 25.0%
!!! AGATATGATTTATTTTGTCC+TGG + chr5_1:60694068-60694087 Msa0741180:intron 25.0%
! AAATCCACTAAATAATCCAT+TGG - chr5_1:60694129-60694148 None:intergenic 25.0%
!!! GTTCTAAAATATTAAGACAG+AGG + chr5_1:60694334-60694353 Msa0741180:intron 25.0%
!! AAACTTTCCTTTGTATTGAT+GGG - chr5_1:60694572-60694591 None:intergenic 25.0%
! AAAACTTTCCTTTGTATTGA+TGG - chr5_1:60694573-60694592 None:intergenic 25.0%
!!! ATACAAAGGAAAGTTTTAAC+AGG + chr5_1:60694576-60694595 Msa0741180:intron 25.0%
!! AACAAATGAGTTTTACTTTG+GGG + chr5_1:60694759-60694778 Msa0741180:intron 25.0%
! AGTAACTATAAAGGAGAATA+TGG + chr5_1:60694801-60694820 Msa0741180:intron 25.0%
! ATGAGAATAATAAACGACTA+AGG + chr5_1:60694948-60694967 Msa0741180:intron 25.0%
! AATAATAAACGACTAAGGTT+TGG + chr5_1:60694953-60694972 Msa0741180:intron 25.0%
!! AATTTTTGCTAGGTATCAAA+TGG - chr5_1:60695078-60695097 None:intergenic 25.0%
!! TCATATGTACAATTTTTGCT+AGG - chr5_1:60695088-60695107 None:intergenic 25.0%
! AGAAGAATCATTGATATACA+GGG - chr5_1:60695214-60695233 None:intergenic 25.0%
! AAGAAGAATCATTGATATAC+AGG - chr5_1:60695215-60695234 None:intergenic 25.0%
!!! ATGGTTTTGCAAAATATATG+TGG + chr5_1:60695487-60695506 Msa0741180:intron 25.0%
! TTCATTTATGAGAGATACTA+GGG + chr5_1:60695547-60695566 Msa0741180:intron 25.0%
! AGTATGAGAAAACAACTAAA+AGG - chr5_1:60695668-60695687 None:intergenic 25.0%
! ATCAATCAAAGAACACTAAA+GGG - chr5_1:60695697-60695716 None:intergenic 25.0%
! AATCAATCAAAGAACACTAA+AGG - chr5_1:60695698-60695717 None:intergenic 25.0%
! CATTAATGTTGCTAGATTAA+TGG + chr5_1:60695777-60695796 Msa0741180:intron 25.0%
!! TTTTCCATTGAATACAATTG+AGG - chr5_1:60695880-60695899 None:intergenic 25.0%
! GTAAACATGACATAGTATAT+AGG - chr5_1:60696203-60696222 None:intergenic 25.0%
! GTTTACAACACTTACAATAT+TGG + chr5_1:60696217-60696236 Msa0741180:CDS 25.0%
!!! AAATTGCAAAAACTTGTTGA+CGG - chr5_1:60696266-60696285 None:intergenic 25.0%
!! CAAGTTTTTGCAATTTATGT+CGG + chr5_1:60696270-60696289 Msa0741180:intron 25.0%
! ACTATTATGTCAGAAATATG+TGG + chr5_1:60696390-60696409 Msa0741180:CDS 25.0%
! TACATATATGTTGAAATTGC+AGG + chr5_1:60696571-60696590 Msa0741180:intron 25.0%
! AAGACAAGATTTATGTTAGA+TGG + chr5_1:60696705-60696724 Msa0741180:exon 25.0%
!!! GGTTTTATATGACATAGTAA+AGG + chr5_1:60696726-60696745 Msa0741180:three_prime_UTR 25.0%
! ACATAGTAAAGGTCTTAATT+AGG + chr5_1:60696737-60696756 Msa0741180:three_prime_UTR 25.0%
! CATAGTAAAGGTCTTAATTA+GGG + chr5_1:60696738-60696757 Msa0741180:three_prime_UTR 25.0%
! ATAGTAAAGGTCTTAATTAG+GGG + chr5_1:60696739-60696758 Msa0741180:three_prime_UTR 25.0%
! TAATGTAACCATAGAATGAT+GGG + chr5_1:60696832-60696851 Msa0741180:three_prime_UTR 25.0%
! GTGTAAAATGTTTACATTGA+CGG + chr5_1:60697019-60697038 Msa0741180:three_prime_UTR 25.0%
!! TCTTTTATTATCAGCATATC+GGG + chr5_1:60697062-60697081 Msa0741180:three_prime_UTR 25.0%
! AATGTAAAAATAGCCTCAAA+AGG - chr5_1:60697232-60697251 None:intergenic 25.0%
! TTGTTAGAACAGTATACATA+TGG + chr5_1:60697280-60697299 Msa0741180:three_prime_UTR 25.0%
!!! TACATATGGTGATTTTGTTT+TGG + chr5_1:60697294-60697313 Msa0741180:three_prime_UTR 25.0%
!!! TATTATTTTGTAGGTGTTGG+TGG + chr5_1:60689503-60689522 Msa0741180:intron 30.0%
ATTATCTATTGGAACCACTA+TGG + chr5_1:60689531-60689550 Msa0741180:CDS 30.0%
ATAACAGAAATTTAGGCCAA+GGG - chr5_1:60689876-60689895 None:intergenic 30.0%
GATTGTATAAGTAAGAACAG+AGG + chr5_1:60690005-60690024 Msa0741180:intron 30.0%
GAGAACATGTAATGAATGAA+AGG + chr5_1:60690150-60690169 Msa0741180:intron 30.0%
TGTAATGAATGAAAGGGTTT+AGG + chr5_1:60690157-60690176 Msa0741180:intron 30.0%
GTAATGAATGAAAGGGTTTA+GGG + chr5_1:60690158-60690177 Msa0741180:intron 30.0%
! GGGTAAAATCATGATTTTCT+TGG + chr5_1:60690222-60690241 Msa0741180:intron 30.0%
! AAATCATGATTTTCTTGGAG+CGG + chr5_1:60690227-60690246 Msa0741180:intron 30.0%
AAGCATTAAATTGAGATTCG+CGG - chr5_1:60690278-60690297 None:intergenic 30.0%
GACTAATTTGACGTGAAAAA+AGG - chr5_1:60690446-60690465 None:intergenic 30.0%
!!! AGAGGTCACGTTATTTTTTA+TGG - chr5_1:60690628-60690647 None:intergenic 30.0%
! TATTTGATAACATTGGCACA+CGG - chr5_1:60690752-60690771 None:intergenic 30.0%
!! GGCTTTATATGACAGATTTT+TGG + chr5_1:60690840-60690859 Msa0741180:intron 30.0%
AAATAAAGTCAAAGGATCTC+TGG + chr5_1:60691026-60691045 Msa0741180:intron 30.0%
! TTGCAGAATCTTTTTCTGTA+TGG + chr5_1:60691119-60691138 Msa0741180:intron 30.0%
GTGCATTAAGTATTATTGTG+AGG + chr5_1:60691223-60691242 Msa0741180:CDS 30.0%
!! ATTAGTACTGGTCTTCTTTA+TGG + chr5_1:60691614-60691633 Msa0741180:CDS 30.0%
AACAAATGCCTGTATAAACT+AGG - chr5_1:60691677-60691696 None:intergenic 30.0%
AGAAAAATGAGCATAAAGGA+CGG - chr5_1:60691736-60691755 None:intergenic 30.0%
!! TCCTTTATGCTCATTTTTCT+GGG + chr5_1:60691736-60691755 Msa0741180:intron 30.0%
AAATTACTTAAAGAATGCCC+CGG + chr5_1:60691887-60691906 Msa0741180:intron 30.0%
ACAACTAAAAAGGAAAGAAG+GGG - chr5_1:60691996-60692015 None:intergenic 30.0%
GACAACTAAAAAGGAAAGAA+GGG - chr5_1:60691997-60692016 None:intergenic 30.0%
AGACAACTAAAAAGGAAAGA+AGG - chr5_1:60691998-60692017 None:intergenic 30.0%
ATCTTGGAAGACAACTAAAA+AGG - chr5_1:60692006-60692025 None:intergenic 30.0%
CTACTAAAGTGACAATGAAA+AGG + chr5_1:60692228-60692247 Msa0741180:intron 30.0%
!!! ATGTTTTAAGTTCTTTCACC+AGG + chr5_1:60692429-60692448 Msa0741180:intron 30.0%
AAATTCACATGAATAAAGCC+TGG - chr5_1:60692450-60692469 None:intergenic 30.0%
GAGATTTGAATCACACAATT+AGG + chr5_1:60692554-60692573 Msa0741180:intron 30.0%
TTGAATCACACAATTAGGTT+TGG + chr5_1:60692559-60692578 Msa0741180:intron 30.0%
TAGGGTTCAACATTAGTAAA+AGG + chr5_1:60692728-60692747 Msa0741180:intron 30.0%
AGGGTTCAACATTAGTAAAA+GGG + chr5_1:60692729-60692748 Msa0741180:intron 30.0%
TCACAAAAGTAACGAATCAA+TGG - chr5_1:60692885-60692904 None:intergenic 30.0%
! GATTTCTCATATCCAGTTTT+TGG + chr5_1:60693036-60693055 Msa0741180:intron 30.0%
ACATAGTTATCCATACAACT+GGG - chr5_1:60693080-60693099 None:intergenic 30.0%
TAACTAACAATGCACTAACA+TGG + chr5_1:60693150-60693169 Msa0741180:intron 30.0%
! ATGGGTATGAATTTTTCTGT+TGG + chr5_1:60693179-60693198 Msa0741180:intron 30.0%
! ATGGTTTTTCATGTTAGTTG+TGG + chr5_1:60693282-60693301 Msa0741180:CDS 30.0%
! TCTATAGGATCTCCAATTTT+TGG + chr5_1:60693457-60693476 Msa0741180:intron 30.0%
! CTATAGGATCTCCAATTTTT+GGG + chr5_1:60693458-60693477 Msa0741180:intron 30.0%
! TATAGGATCTCCAATTTTTG+GGG + chr5_1:60693459-60693478 Msa0741180:intron 30.0%
! TTTCTTTTACCCCCAAAAAT+TGG - chr5_1:60693472-60693491 None:intergenic 30.0%
!! AATTTTTGGGGGTAAAAGAA+AGG + chr5_1:60693471-60693490 Msa0741180:intron 30.0%
AACAAAGAGAAAAAACTAGG+AGG + chr5_1:60693504-60693523 Msa0741180:intron 30.0%
ACAAAGAGAAAAAACTAGGA+GGG + chr5_1:60693505-60693524 Msa0741180:intron 30.0%
AAATGCAAATGTAACAAAGC+TGG + chr5_1:60693556-60693575 Msa0741180:intron 30.0%
!! ATAGCGGAATTTTAACAAAC+CGG + chr5_1:60693609-60693628 Msa0741180:intron 30.0%
TGATTGACAATATTGAAGCA+TGG + chr5_1:60693819-60693838 Msa0741180:intron 30.0%
TGTATTTCTCAAAGGGTTAA+GGG - chr5_1:60693868-60693887 None:intergenic 30.0%
! CTTTTATTCATGCTTGAGAT+CGG + chr5_1:60694244-60694263 Msa0741180:intron 30.0%
GATCGGATATATAAAGTTTG+AGG + chr5_1:60694261-60694280 Msa0741180:intron 30.0%
TTAGAACTCCTACATTCTAA+AGG - chr5_1:60694321-60694340 None:intergenic 30.0%
TGTGTTACATCCTAAACAAT+AGG - chr5_1:60694487-60694506 None:intergenic 30.0%
! ATTGTTTAGGATGTAACACA+AGG + chr5_1:60694487-60694506 Msa0741180:intron 30.0%
TTAACAGGCAACAATAAAAC+CGG + chr5_1:60694591-60694610 Msa0741180:intron 30.0%
CATAAATATGTATCCACCTT+AGG - chr5_1:60694696-60694715 None:intergenic 30.0%
ATATTTATGCAGCAGTATAC+AGG + chr5_1:60694707-60694726 Msa0741180:intron 30.0%
! ACAAATGAGTTTTACTTTGG+GGG + chr5_1:60694760-60694779 Msa0741180:intron 30.0%
AACTATAAAGGAGAATATGG+TGG + chr5_1:60694804-60694823 Msa0741180:intron 30.0%
!!! TAAAATCAGTGGGCTATTTT+GGG - chr5_1:60695044-60695063 None:intergenic 30.0%
!!! ATAAAATCAGTGGGCTATTT+TGG - chr5_1:60695045-60695064 None:intergenic 30.0%
!!! AAAATAGCCCACTGATTTTA+TGG + chr5_1:60695044-60695063 Msa0741180:intron 30.0%
! CTCTCAGTTTATTTAGTCTT+AGG + chr5_1:60695111-60695130 Msa0741180:intron 30.0%
TTAACTTCAGTGATAGAACT+TGG + chr5_1:60695327-60695346 Msa0741180:intron 30.0%
CTTCATTTATGAGAGATACT+AGG + chr5_1:60695546-60695565 Msa0741180:intron 30.0%
! TGAACTTGTTCATGTTCTAT+TGG - chr5_1:60695614-60695633 None:intergenic 30.0%
GAAAAAGTTACTATCTAGTC+AGG - chr5_1:60695646-60695665 None:intergenic 30.0%
ACAATAAATCACTCAGTCAA+GGG - chr5_1:60695818-60695837 None:intergenic 30.0%
TACAATAAATCACTCAGTCA+AGG - chr5_1:60695819-60695838 None:intergenic 30.0%
TACCTTGAACATTATTACAC+TGG - chr5_1:60696243-60696262 None:intergenic 30.0%
ATGCATATGTTAGTTGTTAC+TGG + chr5_1:60696293-60696312 Msa0741180:intron 30.0%
ACATTTCAAATTATGCTTGC+AGG + chr5_1:60696344-60696363 Msa0741180:intron 30.0%
AATAATGTTACATCTGACCA+AGG + chr5_1:60696437-60696456 Msa0741180:CDS 30.0%
! TGACTATACCTCTAAAAGAA+TGG - chr5_1:60696476-60696495 None:intergenic 30.0%
GAAAGAATGTAAAGTATGGT+TGG - chr5_1:60696547-60696566 None:intergenic 30.0%
ATATATGTTGAAATTGCAGG+TGG + chr5_1:60696574-60696593 Msa0741180:intron 30.0%
GTAATGTAACCATAGAATGA+TGG + chr5_1:60696831-60696850 Msa0741180:three_prime_UTR 30.0%
AATCCATGAAAGAATAGCTT+CGG - chr5_1:60696864-60696883 None:intergenic 30.0%
TGTCAATCAATCATAACCAT+TGG + chr5_1:60696922-60696941 Msa0741180:three_prime_UTR 30.0%
! TACAAATGATGGTTTGTGAT+TGG + chr5_1:60696990-60697009 Msa0741180:three_prime_UTR 30.0%
AAAGCTCAGACTAAAAATTC+AGG - chr5_1:60697099-60697118 None:intergenic 30.0%
TTACATTAATGAAGAAAGGG+TGG + chr5_1:60697245-60697264 Msa0741180:three_prime_UTR 30.0%
TAGCATACAAGATTCATTTG+TGG + chr5_1:60697350-60697369 Msa0741180:three_prime_UTR 30.0%
! TTGGCTTCAAGTTTGTTCAT+TGG + chr5_1:60689317-60689336 Msa0741180:CDS 35.0%
! AGCTTCTACTTATGGTGTTA+GGG + chr5_1:60689379-60689398 Msa0741180:CDS 35.0%
TAACAGAAATTTAGGCCAAG+GGG - chr5_1:60689875-60689894 None:intergenic 35.0%
GATAACAGAAATTTAGGCCA+AGG - chr5_1:60689877-60689896 None:intergenic 35.0%
! AAAGGGTTTAGGGTTGAAAA+CGG + chr5_1:60690168-60690187 Msa0741180:intron 35.0%
! AATCATGATTTTCTTGGAGC+GGG + chr5_1:60690228-60690247 Msa0741180:intron 35.0%
AGTTTAGGCAAAATTACACC+AGG + chr5_1:60690351-60690370 Msa0741180:intron 35.0%
TTTATAAACGCCAGCAATGT+TGG + chr5_1:60690473-60690492 Msa0741180:intron 35.0%
TCTTACGTGAGCATTCATAA+AGG + chr5_1:60690534-60690553 Msa0741180:intron 35.0%
TGTGCACAAGGGTTTAATTA+TGG + chr5_1:60690682-60690701 Msa0741180:intron 35.0%
! GGTTTAATTATGGTGTTGAG+CGG + chr5_1:60690692-60690711 Msa0741180:intron 35.0%
CATTCTTCACAAATTGGCTA+GGG - chr5_1:60690797-60690816 None:intergenic 35.0%
AAAGCCACCATAAAATGTCA+TGG - chr5_1:60690826-60690845 None:intergenic 35.0%
GAGAATGAAAGTCTGTTCAA+TGG + chr5_1:60690928-60690947 Msa0741180:intron 35.0%
TCAGAAACACAAAAATGGGA+AGG - chr5_1:60691095-60691114 None:intergenic 35.0%
TAATACTTAATGCACCGAGA+GGG - chr5_1:60691218-60691237 None:intergenic 35.0%
ATAATACTTAATGCACCGAG+AGG - chr5_1:60691219-60691238 None:intergenic 35.0%
!! TGTTCTGGAGATATGGAATA+TGG + chr5_1:60691477-60691496 Msa0741180:CDS 35.0%
ACCAATGTCCTAGTTTATAC+AGG + chr5_1:60691666-60691685 Msa0741180:CDS 35.0%
!! GTCCTTTATGCTCATTTTTC+TGG + chr5_1:60691735-60691754 Msa0741180:intron 35.0%
ACCCAGAAAAATGAGCATAA+AGG - chr5_1:60691740-60691759 None:intergenic 35.0%
AATTACTTAAAGAATGCCCC+GGG + chr5_1:60691888-60691907 Msa0741180:intron 35.0%
CAACTAAAAAGGAAAGAAGG+GGG - chr5_1:60691995-60692014 None:intergenic 35.0%
ATTACAGAGAGAGAAATACG+TGG - chr5_1:60692122-60692141 None:intergenic 35.0%
AGAATTAGGGAAGAACTGAA+AGG + chr5_1:60692496-60692515 Msa0741180:intron 35.0%
TGAAAGGTGAACCTAATTGT+TGG + chr5_1:60692512-60692531 Msa0741180:intron 35.0%
! CAGTAGGATTTGGGTTAATT+GGG + chr5_1:60692646-60692665 Msa0741180:intron 35.0%
GATTAATTCGCCTTCAACTA+GGG + chr5_1:60692710-60692729 Msa0741180:intron 35.0%
TAATGTTGAACCCTAGTTGA+AGG - chr5_1:60692723-60692742 None:intergenic 35.0%
!! ATTTTGGTAAACCCCAATCT+TGG + chr5_1:60692778-60692797 Msa0741180:intron 35.0%
ATAAGGAAGCTTCCAAGATT+GGG - chr5_1:60692812-60692831 None:intergenic 35.0%
AATAAGGAAGCTTCCAAGAT+TGG - chr5_1:60692813-60692832 None:intergenic 35.0%
!! AGTAAAGTATCGAATCCACA+GGG - chr5_1:60692990-60693009 None:intergenic 35.0%
!! TAGTAAAGTATCGAATCCAC+AGG - chr5_1:60692991-60693010 None:intergenic 35.0%
ATGAGAAATCCACAAGTGTA+CGG - chr5_1:60693026-60693045 None:intergenic 35.0%
ATAGTTATCCATACAACTGG+GGG - chr5_1:60693078-60693097 None:intergenic 35.0%
CATAGTTATCCATACAACTG+GGG - chr5_1:60693079-60693098 None:intergenic 35.0%
GACATAGTTATCCATACAAC+TGG - chr5_1:60693081-60693100 None:intergenic 35.0%
! GTATGAATTTTTCTGTTGGC+AGG + chr5_1:60693183-60693202 Msa0741180:intron 35.0%
! AGTTAGTTTATCCACAGACA+TGG + chr5_1:60693263-60693282 Msa0741180:CDS 35.0%
AACATGAAAAACCATGTCTG+TGG - chr5_1:60693277-60693296 None:intergenic 35.0%
TCACGATCCATTCATTCTAT+AGG + chr5_1:60693442-60693461 Msa0741180:intron 35.0%
TGGAGATCCTATAGAATGAA+TGG - chr5_1:60693452-60693471 None:intergenic 35.0%
!! ATAGGATCTCCAATTTTTGG+GGG + chr5_1:60693460-60693479 Msa0741180:intron 35.0%
TAAAATTCCGCTATGCTGTA+GGG - chr5_1:60693603-60693622 None:intergenic 35.0%
TTAAAATTCCGCTATGCTGT+AGG - chr5_1:60693604-60693623 None:intergenic 35.0%
!! TAGCGGAATTTTAACAAACC+GGG + chr5_1:60693610-60693629 Msa0741180:intron 35.0%
TGTGATCTGTGATTGACAAA+TGG + chr5_1:60693725-60693744 Msa0741180:intron 35.0%
ATCTGTGATTGACAAATGGT+GGG + chr5_1:60693729-60693748 Msa0741180:intron 35.0%
ACAAAACAAAAAAGGCAGCT+CGG - chr5_1:60693794-60693813 None:intergenic 35.0%
GTGTATTTCTCAAAGGGTTA+AGG - chr5_1:60693869-60693888 None:intergenic 35.0%
TCCATTGGTCACGTATTAAA+GGG - chr5_1:60694114-60694133 None:intergenic 35.0%
ATCCATTGGTCACGTATTAA+AGG - chr5_1:60694115-60694134 None:intergenic 35.0%
!! GTGACCAATGGATTATTTAG+TGG + chr5_1:60694122-60694141 Msa0741180:intron 35.0%
! TCATGTCATAAAGTACTCGA+TGG + chr5_1:60694181-60694200 Msa0741180:intron 35.0%
GGAGTTTCACACTATCTATA+TGG + chr5_1:60694202-60694221 Msa0741180:intron 35.0%
! CGATTTTCACCTAGAAATAG+CGG - chr5_1:60694393-60694412 None:intergenic 35.0%
!! CGCTATTTCTAGGTGAAAAT+CGG + chr5_1:60694391-60694410 Msa0741180:intron 35.0%
!! GCTATTTCTAGGTGAAAATC+GGG + chr5_1:60694392-60694411 Msa0741180:intron 35.0%
!! CTATTTCTAGGTGAAAATCG+GGG + chr5_1:60694393-60694412 Msa0741180:intron 35.0%
AAAACCGGTGATATCTTTAC+TGG + chr5_1:60694606-60694625 Msa0741180:intron 35.0%
TATCTTTACTGGTGAGTGTT+AGG + chr5_1:60694617-60694636 Msa0741180:intron 35.0%
CTACTATAGTTCGCATTTCA+CGG - chr5_1:60694643-60694662 None:intergenic 35.0%
GTGAAATGCGAACTATAGTA+GGG + chr5_1:60694642-60694661 Msa0741180:intron 35.0%
TGTTGGAGCAGTAACTATAA+AGG + chr5_1:60694792-60694811 Msa0741180:intron 35.0%
TTGTAGTATATAGTGCACTG+AGG + chr5_1:60694908-60694927 Msa0741180:intron 35.0%
GTCGTTTATTATTCTCATCC+TGG - chr5_1:60694946-60694965 None:intergenic 35.0%
!! GATTGTCTGGCTTTATCTTT+GGG - chr5_1:60694979-60694998 None:intergenic 35.0%
!! AGATTGTCTGGCTTTATCTT+TGG - chr5_1:60694980-60694999 None:intergenic 35.0%
!!! AAAATCAGTGGGCTATTTTG+GGG - chr5_1:60695043-60695062 None:intergenic 35.0%
ACTAGACACTAGTGCATTTA+GGG - chr5_1:60695172-60695191 None:intergenic 35.0%
TACTAGACACTAGTGCATTT+AGG - chr5_1:60695173-60695192 None:intergenic 35.0%
AATGCACTAGTGTCTAGTAT+TGG + chr5_1:60695174-60695193 Msa0741180:intron 35.0%
CAGTGAAACATATCTCACAA+AGG - chr5_1:60695253-60695272 None:intergenic 35.0%
CAGACAATGGTTATGGTTAT+TGG - chr5_1:60695448-60695467 None:intergenic 35.0%
TACCTGGTATCATGAATAGA+TGG + chr5_1:60695468-60695487 Msa0741180:intron 35.0%
AACCATCTATTCATGATACC+AGG - chr5_1:60695473-60695492 None:intergenic 35.0%
ATGATTACTTGTAAGGGCTA+AGG - chr5_1:60695577-60695596 None:intergenic 35.0%
TGTTGCTAGATTAATGGTAC+TGG + chr5_1:60695783-60695802 Msa0741180:intron 35.0%
AATAAATCACTCAGTCAAGG+GGG - chr5_1:60695816-60695835 None:intergenic 35.0%
CAATAAATCACTCAGTCAAG+GGG - chr5_1:60695817-60695836 None:intergenic 35.0%
! TTGAGGCGTCAATTTGAAAA+GGG - chr5_1:60695863-60695882 None:intergenic 35.0%
! ATTGAGGCGTCAATTTGAAA+AGG - chr5_1:60695864-60695883 None:intergenic 35.0%
TCAAATTATGCTTGCAGGAT+TGG + chr5_1:60696349-60696368 Msa0741180:intron 35.0%
CAAATTATGCTTGCAGGATT+GGG + chr5_1:60696350-60696369 Msa0741180:intron 35.0%
!! GCATGGTATTGGTATATGAT+GGG - chr5_1:60696800-60696819 None:intergenic 35.0%
!! TGCATGGTATTGGTATATGA+TGG - chr5_1:60696801-60696820 None:intergenic 35.0%
TTTCCGAAGCTATTCTTTCA+TGG + chr5_1:60696858-60696877 Msa0741180:three_prime_UTR 35.0%
!! TTTTTAGTCTGAGCTTTGCA+AGG + chr5_1:60697102-60697121 Msa0741180:three_prime_UTR 35.0%
TTATCTAACACAAGCAACTG+AGG - chr5_1:60697147-60697166 None:intergenic 35.0%
TCAGTTGCTTGTGTTAGATA+AGG + chr5_1:60697146-60697165 Msa0741180:three_prime_UTR 35.0%
CTTGTGTTAGATAAGGTCAT+TGG + chr5_1:60697153-60697172 Msa0741180:three_prime_UTR 35.0%
! ATGATGACGATGATGATCTG+AGG + chr5_1:60689175-60689194 Msa0741180:five_prime_UTR 40.0%
CTGTCGAATGAGAATGTAAC+AGG + chr5_1:60689281-60689300 Msa0741180:CDS 40.0%
CAGCTTCTACTTATGGTGTT+AGG + chr5_1:60689378-60689397 Msa0741180:CDS 40.0%
ATCTATTGGAACCACTATGG+TGG + chr5_1:60689534-60689553 Msa0741180:CDS 40.0%
TCTATTGGAACCACTATGGT+GGG + chr5_1:60689535-60689554 Msa0741180:CDS 40.0%
! GTAAGCTTTTCCTTCTTCCT+AGG + chr5_1:60689573-60689592 Msa0741180:CDS 40.0%
TGACATCAAACCTAGGAAGA+AGG - chr5_1:60689586-60689605 None:intergenic 40.0%
ACGGCAAATTGCTCTTTAGA+CGG + chr5_1:60690187-60690206 Msa0741180:intron 40.0%
ATTAAATTGAGATTCGCGGC+TGG - chr5_1:60690274-60690293 None:intergenic 40.0%
GTTAAAGACTAAAGGACTCC+TGG - chr5_1:60690372-60690391 None:intergenic 40.0%
! GAATGCTCACGTAAGACTTT+TGG - chr5_1:60690530-60690549 None:intergenic 40.0%
ATATTGACCATGGCAGATTG+CGG + chr5_1:60690769-60690788 Msa0741180:intron 40.0%
CCATTCTTCACAAATTGGCT+AGG - chr5_1:60690798-60690817 None:intergenic 40.0%
CCTAGCCAATTTGTGAAGAA+TGG + chr5_1:60690795-60690814 Msa0741180:intron 40.0%
CACTGCCATTCTTCACAAAT+TGG - chr5_1:60690803-60690822 None:intergenic 40.0%
! AGTGCCATGACATTTTATGG+TGG + chr5_1:60690819-60690838 Msa0741180:intron 40.0%
TACAGTCACGACAGTGTTAT+CGG - chr5_1:60690883-60690902 None:intergenic 40.0%
GTCTCTTGTTCAGTGATTGT+AGG + chr5_1:60691141-60691160 Msa0741180:CDS 40.0%
TTGTTCAGTGATTGTAGGAG+AGG + chr5_1:60691146-60691165 Msa0741180:CDS 40.0%
AATACTTAATGCACCGAGAG+GGG - chr5_1:60691217-60691236 None:intergenic 40.0%
! CTGACCTTATTCTGAAAGAG+AGG + chr5_1:60691362-60691381 Msa0741180:CDS 40.0%
GTAGCCTCTCTTTCAGAATA+AGG - chr5_1:60691369-60691388 None:intergenic 40.0%
CTACACAAGCTTGGGATATT+AGG + chr5_1:60691385-60691404 Msa0741180:CDS 40.0%
TGTTATTCACGCTCCTAAAG+AGG + chr5_1:60691441-60691460 Msa0741180:CDS 40.0%
GATGTGATAGGATCCTCTTT+AGG - chr5_1:60691457-60691476 None:intergenic 40.0%
ATCTCCAGAACAGATGTGAT+AGG - chr5_1:60691469-60691488 None:intergenic 40.0%
!! TCACATCTGTTCTGGAGATA+TGG + chr5_1:60691470-60691489 Msa0741180:CDS 40.0%
CAGCATTCCTAGCATATGTT+GGG + chr5_1:60691586-60691605 Msa0741180:intron 40.0%
ATACAGACCCAACATATGCT+AGG - chr5_1:60691596-60691615 None:intergenic 40.0%
TGTTGGGTCTGTATTAGTAC+TGG + chr5_1:60691602-60691621 Msa0741180:CDS 40.0%
! TTCCATTTTGCACCAACATG+TGG + chr5_1:60691639-60691658 Msa0741180:CDS 40.0%
ACATTGGTATGTCCACATGT+TGG - chr5_1:60691654-60691673 None:intergenic 40.0%
GCCTGTATAAACTAGGACAT+TGG - chr5_1:60691670-60691689 None:intergenic 40.0%
TACAGGCATTTGTTCGTTGA+TGG + chr5_1:60691683-60691702 Msa0741180:CDS 40.0%
ACAGGCATTTGTTCGTTGAT+GGG + chr5_1:60691684-60691703 Msa0741180:CDS 40.0%
ATTACTTAAAGAATGCCCCG+GGG + chr5_1:60691889-60691908 Msa0741180:intron 40.0%
TGACAATGAAAAGGAGCTGA+GGG + chr5_1:60692237-60692256 Msa0741180:intron 40.0%
! CAATTAGGTTTGGTTTCTCG+AGG + chr5_1:60692569-60692588 Msa0741180:intron 40.0%
ACTGCCGTGGTAATTGATAT+TGG - chr5_1:60692630-60692649 None:intergenic 40.0%
ATATCAATTACCACGGCAGT+AGG + chr5_1:60692630-60692649 Msa0741180:intron 40.0%
! GCAGTAGGATTTGGGTTAAT+TGG + chr5_1:60692645-60692664 Msa0741180:intron 40.0%
GGATTAATTCGCCTTCAACT+AGG + chr5_1:60692709-60692728 Msa0741180:intron 40.0%
TGGGGTTAACTTCCAAGATT+GGG - chr5_1:60692793-60692812 None:intergenic 40.0%
TTGGGGTTAACTTCCAAGAT+TGG - chr5_1:60692794-60692813 None:intergenic 40.0%
TTGGAAGTTAACCCCAATCT+TGG + chr5_1:60692797-60692816 Msa0741180:intron 40.0%
TAAGGAAGCTTCCAAGATTG+GGG - chr5_1:60692811-60692830 None:intergenic 40.0%
GACAAAAAACCGTACACTTG+TGG + chr5_1:60693014-60693033 Msa0741180:intron 40.0%
! AGGTCTGTTACTTAGCATAC+TGG + chr5_1:60693341-60693360 Msa0741180:intron 40.0%
AAGAGAAAAAACTAGGAGGG+AGG + chr5_1:60693508-60693527 Msa0741180:intron 40.0%
AGAGAAAAAACTAGGAGGGA+GGG + chr5_1:60693509-60693528 Msa0741180:intron 40.0%
TGAGTATCACAGAACAATCC+CGG - chr5_1:60693631-60693650 None:intergenic 40.0%
CACAGATCACAGAAAATAGC+AGG - chr5_1:60693716-60693735 None:intergenic 40.0%
GATCTGTGATTGACAAATGG+TGG + chr5_1:60693728-60693747 Msa0741180:intron 40.0%
GTATGTCATTAATGAGGACC+AGG - chr5_1:60694089-60694108 None:intergenic 40.0%
AGGGTGGTATGTCATTAATG+AGG - chr5_1:60694095-60694114 None:intergenic 40.0%
ATTGGTCACGTATTAAAGGG+TGG - chr5_1:60694111-60694130 None:intergenic 40.0%
ACCCTTTAATACGTGACCAA+TGG + chr5_1:60694110-60694129 Msa0741180:intron 40.0%
TGAGGAAAATGCTCAGCAAA+TGG + chr5_1:60694279-60694298 Msa0741180:intron 40.0%
!! GGAGAGAACCTTTAGAATGT+AGG + chr5_1:60694310-60694329 Msa0741180:intron 40.0%
!! AGATACCCAAGTTCTGAAAC+CGG - chr5_1:60694446-60694465 None:intergenic 40.0%
TGTAACACAAGGCTCGAATT+CGG + chr5_1:60694498-60694517 Msa0741180:intron 40.0%
AATGCTTGAGCTGTGATTTG+TGG + chr5_1:60694536-60694555 Msa0741180:intron 40.0%
CTGATTGCCCATCAATACAA+AGG + chr5_1:60694562-60694581 Msa0741180:intron 40.0%
CTCACCAGTAAAGATATCAC+CGG - chr5_1:60694613-60694632 None:intergenic 40.0%
CGTGAAATGCGAACTATAGT+AGG + chr5_1:60694641-60694660 Msa0741180:intron 40.0%
TGCGAACTATAGTAGGGAAA+AGG + chr5_1:60694648-60694667 Msa0741180:intron 40.0%
! ATAGTAGGGAAAAGGTGTAG+TGG + chr5_1:60694656-60694675 Msa0741180:intron 40.0%
TTTGGGGGAAGTTGAATTGT+TGG + chr5_1:60694775-60694794 Msa0741180:intron 40.0%
!! TCCAAGTTGGTCTATACTTG+TGG + chr5_1:60694834-60694853 Msa0741180:intron 40.0%
ACCACAAGTATAGACCAACT+TGG - chr5_1:60694838-60694857 None:intergenic 40.0%
TATACTTGTGGTTCCTGTTC+TGG + chr5_1:60694846-60694865 Msa0741180:intron 40.0%
CTGAGGAAAATAGAAACACC+AGG + chr5_1:60694925-60694944 Msa0741180:intron 40.0%
GCTTAAAGTGAGAGATTGTC+TGG - chr5_1:60694992-60695011 None:intergenic 40.0%
!!! AAATCAGTGGGCTATTTTGG+GGG - chr5_1:60695042-60695061 None:intergenic 40.0%
GTTGAGGCCATAAAATCAGT+GGG - chr5_1:60695054-60695073 None:intergenic 40.0%
AGTTGAGGCCATAAAATCAG+TGG - chr5_1:60695055-60695074 None:intergenic 40.0%
CTAGGTATCAAATGGAGTTG+AGG - chr5_1:60695070-60695089 None:intergenic 40.0%
! CACTAGTGTCTAGTATTGGA+TGG + chr5_1:60695178-60695197 Msa0741180:intron 40.0%
ATGATACCAGGTACAGACAA+TGG - chr5_1:60695461-60695480 None:intergenic 40.0%
TTACTTGTAAGGGCTAAGGA+AGG - chr5_1:60695573-60695592 None:intergenic 40.0%
GACGCCTCAATTGTATTCAA+TGG + chr5_1:60695873-60695892 Msa0741180:intron 40.0%
GGCCAGTGTAATAATGTTCA+AGG + chr5_1:60696238-60696257 Msa0741180:CDS 40.0%
!! GGCTTTATTGTTGTACTCTC+TGG + chr5_1:60696411-60696430 Msa0741180:CDS 40.0%
! GAGAGAAGCCATTCTTTTAG+AGG + chr5_1:60696465-60696484 Msa0741180:CDS 40.0%
TATGTTGAAATTGCAGGTGG+CGG + chr5_1:60696577-60696596 Msa0741180:intron 40.0%
ACAGATAATGTAGGCGAAGA+AGG - chr5_1:60696607-60696626 None:intergenic 40.0%
TAAAGCCGGACAGATAATGT+AGG - chr5_1:60696616-60696635 None:intergenic 40.0%
! TTATCTGTCCGGCTTTATAC+CGG + chr5_1:60696619-60696638 Msa0741180:CDS 40.0%
AAATGGGGACTCGTTACTTA+AGG + chr5_1:60696642-60696661 Msa0741180:CDS 40.0%
TCATTCAGTTTCCCAGAGAA+AGG - chr5_1:60696773-60696792 None:intergenic 40.0%
! TGTAACCATAGAATGATGGG+AGG + chr5_1:60696835-60696854 Msa0741180:three_prime_UTR 40.0%
!! CGAGATTAGTTCTCCTTTTG+AGG + chr5_1:60697216-60697235 Msa0741180:three_prime_UTR 40.0%
! GAGGAACCTTGTTTGTCTGT+CGG + chr5_1:60689194-60689213 Msa0741180:five_prime_UTR 45.0%
AACAGGTCTCATTCTAGCGT+TGG + chr5_1:60689298-60689317 Msa0741180:CDS 45.0%
CGAAGAGCAGCTTCTACTTA+TGG + chr5_1:60689371-60689390 Msa0741180:CDS 45.0%
! TCTACTTATGGTGTTAGGGC+TGG + chr5_1:60689383-60689402 Msa0741180:CDS 45.0%
TAAGTGCTCTTTGAGCCCTA+AGG + chr5_1:60689821-60689840 Msa0741180:intron 45.0%
TGAATCTAGGTAGTCGATCC+CGG + chr5_1:60689913-60689932 Msa0741180:intron 45.0%
!!! TGCTATCCCACTTTTGGAGT+CGG - chr5_1:60689956-60689975 None:intergenic 45.0%
AAAAGTGGGATAGCAGGATC+CGG + chr5_1:60689961-60689980 Msa0741180:intron 45.0%
GAAGTTTGGTCCAACATTGC+TGG - chr5_1:60690486-60690505 None:intergenic 45.0%
TGACCTTGATGTTGTGCACA+AGG + chr5_1:60690670-60690689 Msa0741180:intron 45.0%
GACCTTGATGTTGTGCACAA+GGG + chr5_1:60690671-60690690 Msa0741180:intron 45.0%
AACCCTTGTGCACAACATCA+AGG - chr5_1:60690676-60690695 None:intergenic 45.0%
! GGCAGTGCCATGACATTTTA+TGG + chr5_1:60690816-60690835 Msa0741180:intron 45.0%
GTCAGCTAAAACAGCACTAG+AGG - chr5_1:60691347-60691366 None:intergenic 45.0%
AAAGAGAGGCTACACAAGCT+TGG + chr5_1:60691376-60691395 Msa0741180:CDS 45.0%
AAGAGAGGCTACACAAGCTT+GGG + chr5_1:60691377-60691396 Msa0741180:CDS 45.0%
GGATCCTATCACATCTGTTC+TGG + chr5_1:60691462-60691481 Msa0741180:CDS 45.0%
TGGAATATGGCTACTCAACC+AGG + chr5_1:60691490-60691509 Msa0741180:CDS 45.0%
TATGGCTACTCAACCAGGTT+AGG + chr5_1:60691495-60691514 Msa0741180:intron 45.0%
ATGGCTACTCAACCAGGTTA+GGG + chr5_1:60691496-60691515 Msa0741180:intron 45.0%
AAGGTGATGAATCCCTAACC+TGG - chr5_1:60691511-60691530 None:intergenic 45.0%
GCAGCATTCCTAGCATATGT+TGG + chr5_1:60691585-60691604 Msa0741180:intron 45.0%
GTCCACATGTTGGTGCAAAA+TGG - chr5_1:60691644-60691663 None:intergenic 45.0%
TTACTTAAAGAATGCCCCGG+GGG + chr5_1:60691890-60691909 Msa0741180:intron 45.0%
GTGACAATGAAAAGGAGCTG+AGG + chr5_1:60692236-60692255 Msa0741180:intron 45.0%
ATTACCACGGCAGTAGGATT+TGG + chr5_1:60692636-60692655 Msa0741180:intron 45.0%
TTACCACGGCAGTAGGATTT+GGG + chr5_1:60692637-60692656 Msa0741180:intron 45.0%
! GGATTTGGGTTAATTGGGCA+CGG + chr5_1:60692651-60692670 Msa0741180:intron 45.0%
GGGGTTAACTTCCAAGATTG+GGG - chr5_1:60692792-60692811 None:intergenic 45.0%
GGTGAAAGAACGCCAAAAAC+TGG - chr5_1:60693051-60693070 None:intergenic 45.0%
TGCACTAACATGGTGTCTGA+TGG + chr5_1:60693160-60693179 Msa0741180:intron 45.0%
GCACTAACATGGTGTCTGAT+GGG + chr5_1:60693161-60693180 Msa0741180:intron 45.0%
CATTTGCATGACGACGCATA+TGG - chr5_1:60693308-60693327 None:intergenic 45.0%
! AGGGTATCAGTGAGCATAAG+AGG + chr5_1:60693528-60693547 Msa0741180:intron 45.0%
GCTCAGCAAATGGTAAGTTG+TGG + chr5_1:60694289-60694308 Msa0741180:intron 45.0%
! GAAAAGGTGTAGTGGAGATG+AGG + chr5_1:60694664-60694683 Msa0741180:intron 45.0%
TGGTGGAAACTTGTCCAAGT+TGG + chr5_1:60694821-60694840 Msa0741180:intron 45.0%
CACAATGAGGCCTAAAGCTA+GGG - chr5_1:60695139-60695158 None:intergenic 45.0%
! CATTGATATACAGGGAGTGC+AGG - chr5_1:60695206-60695225 None:intergenic 45.0%
CCAGGTACAGACAATGGTTA+TGG - chr5_1:60695455-60695474 None:intergenic 45.0%
CCATAACCATTGTCTGTACC+TGG + chr5_1:60695452-60695471 Msa0741180:intron 45.0%
TTATGCTTGCAGGATTGGGA+TGG + chr5_1:60696354-60696373 Msa0741180:intron 45.0%
GTAAAGTATGGTTGGCGAGT+CGG - chr5_1:60696539-60696558 None:intergenic 45.0%
CTTCGCCTACATTATCTGTC+CGG + chr5_1:60696608-60696627 Msa0741180:CDS 45.0%
! TCCGGCTTTATACCGGAAAT+GGG + chr5_1:60696626-60696645 Msa0741180:CDS 45.0%
AAGTAACGAGTCCCCATTTC+CGG - chr5_1:60696641-60696660 None:intergenic 45.0%
TGAAGAGAACGAATCTCCTG+AGG + chr5_1:60696669-60696688 Msa0741180:CDS 45.0%
CTTCTTGAGCACATATCCTC+AGG - chr5_1:60696688-60696707 None:intergenic 45.0%
GGGAAGTTGAACCTTTCTCT+GGG + chr5_1:60696759-60696778 Msa0741180:three_prime_UTR 45.0%
GGAAACCTCCCATCATTCTA+TGG - chr5_1:60696843-60696862 None:intergenic 45.0%
!!! ATTTTTATTTATTATTTTGT+AGG + chr5_1:60689494-60689513 Msa0741180:intron 5.0%
!! ATTAGTTAAATTATAATAAT+TGG + chr5_1:60692947-60692966 Msa0741180:intron 5.0%
TGAGCTCCGACAGACAAACA+AGG - chr5_1:60689203-60689222 None:intergenic 50.0%
!! TTGGAACCACTATGGTGGGT+AGG + chr5_1:60689539-60689558 Msa0741180:CDS 50.0%
!! TGGAACCACTATGGTGGGTA+GGG + chr5_1:60689540-60689559 Msa0741180:CDS 50.0%
ATCATCCCTACCCACCATAG+TGG - chr5_1:60689548-60689567 None:intergenic 50.0%
!! TTCCTCCAAGAGCACTAGCA+GGG - chr5_1:60689782-60689801 None:intergenic 50.0%
!! GGGCTCAAAGAGCACTTACA+AGG - chr5_1:60689819-60689838 None:intergenic 50.0%
! GAGTAGCCGACTCCAAAAGT+GGG + chr5_1:60689947-60689966 Msa0741180:intron 50.0%
GACTCCAAAAGTGGGATAGC+AGG + chr5_1:60689955-60689974 Msa0741180:intron 50.0%
! GGATCCTGCTATCCCACTTT+TGG - chr5_1:60689962-60689981 None:intergenic 50.0%
AAAGTGGGATAGCAGGATCC+GGG + chr5_1:60689962-60689981 Msa0741180:intron 50.0%
! ATTTTCTTGGAGCGGGAACC+TGG + chr5_1:60690235-60690254 Msa0741180:intron 50.0%
! TTTTCTTGGAGCGGGAACCT+GGG + chr5_1:60690236-60690255 Msa0741180:intron 50.0%
AGTCACGACAGTGTTATCGG+CGG - chr5_1:60690880-60690899 None:intergenic 50.0%
AGAGGGGTAACTAGAACAGC+AGG - chr5_1:60691201-60691220 None:intergenic 50.0%
! GCTGTTCTAGTTACCCCTCT+CGG + chr5_1:60691201-60691220 Msa0741180:CDS 50.0%
!! GTCTTGTTAAAGAGTGCCCC+CGG + chr5_1:60691758-60691777 Msa0741180:intron 50.0%
!! TCTTGTTAAAGAGTGCCCCC+GGG + chr5_1:60691759-60691778 Msa0741180:intron 50.0%
AAATGTTAACGAGTGCCCCC+GGG - chr5_1:60691908-60691927 None:intergenic 50.0%
GAAATGTTAACGAGTGCCCC+CGG - chr5_1:60691909-60691928 None:intergenic 50.0%
! GAGCTGAGGGAGTATATGAC+AGG + chr5_1:60692250-60692269 Msa0741180:intron 50.0%
TAACCCAAATCCTACTGCCG+TGG - chr5_1:60692643-60692662 None:intergenic 50.0%
CTCAAAAATCACGGTCCCTG+TGG + chr5_1:60692972-60692991 Msa0741180:intron 50.0%
ATCCATACAACTGGGGGAGA+GGG - chr5_1:60693072-60693091 None:intergenic 50.0%
TATCCATACAACTGGGGGAG+AGG - chr5_1:60693073-60693092 None:intergenic 50.0%
! GTGATGAGCGTCAAAGCACT+TGG + chr5_1:60693205-60693224 Msa0741180:CDS 50.0%
GAAGAGTCCCTACAGCATAG+CGG + chr5_1:60693593-60693612 Msa0741180:intron 50.0%
ACAAAGCTCCCGAATACGCA+GGG - chr5_1:60693768-60693787 None:intergenic 50.0%
!! TGCGAGTCACCGCTATTTCT+AGG + chr5_1:60694381-60694400 Msa0741180:intron 50.0%
!! ATACCGCCGGTTTCAGAACT+TGG + chr5_1:60694437-60694456 Msa0741180:intron 50.0%
!! TACCGCCGGTTTCAGAACTT+GGG + chr5_1:60694438-60694457 Msa0741180:intron 50.0%
!! TACCCAAGTTCTGAAACCGG+CGG - chr5_1:60694443-60694462 None:intergenic 50.0%
AACACAAGGCTCGAATTCGG+TGG + chr5_1:60694501-60694520 Msa0741180:intron 50.0%
GGAGATGAGGAAGCAACCTA+AGG + chr5_1:60694677-60694696 Msa0741180:intron 50.0%
GATGAGGAAGCAACCTAAGG+TGG + chr5_1:60694680-60694699 Msa0741180:intron 50.0%
CATACGAGTCGTACCAGAAC+AGG - chr5_1:60694862-60694881 None:intergenic 50.0%
TCTGGTACGACTCGTATGCA+AGG + chr5_1:60694864-60694883 Msa0741180:intron 50.0%
!! TTTTGGGGGTTGAGTGGAGT+GGG - chr5_1:60695028-60695047 None:intergenic 50.0%
!! ATTTTGGGGGTTGAGTGGAG+TGG - chr5_1:60695029-60695048 None:intergenic 50.0%
! GTCTTAGGCTCCCTAGCTTT+AGG + chr5_1:60695126-60695145 Msa0741180:intron 50.0%
GCACAATGAGGCCTAAAGCT+AGG - chr5_1:60695140-60695159 None:intergenic 50.0%
! GACACTAGTGCATTTAGGGC+CGG - chr5_1:60695168-60695187 None:intergenic 50.0%
GGCACTTGACACCTTCAACA+CGG + chr5_1:60695998-60696017 Msa0741180:intron 50.0%
AGACACGATTGCCGTGTTGA+AGG - chr5_1:60696012-60696031 None:intergenic 50.0%
GGCACTTGACACCTTCAACA+CGG + chr5_1:60695998-60696017 Msa0741180:intron 50.0%
AGACACGATTGCCGTGTTGA+AGG - chr5_1:60696012-60696031 None:intergenic 50.0%
GGCACTTGACACCTTCAACA+CGG + chr5_1:60695998-60696017 Msa0741180:intron 50.0%
AGACACGATTGCCGTGTTGA+AGG - chr5_1:60696012-60696031 None:intergenic 50.0%
ATGGCTTCTCTCGAAGTCCT+TGG - chr5_1:60696457-60696476 None:intergenic 50.0%
! GTCCGGCTTTATACCGGAAA+TGG + chr5_1:60696625-60696644 Msa0741180:CDS 50.0%
CCCCATTTCCGGTATAAAGC+CGG - chr5_1:60696630-60696649 None:intergenic 50.0%
! CCGGCTTTATACCGGAAATG+GGG + chr5_1:60696627-60696646 Msa0741180:CDS 50.0%
GGGGAAGTTGAACCTTTCTC+TGG + chr5_1:60696758-60696777 Msa0741180:three_prime_UTR 50.0%
TACCAATACCATGCAGCTGC+AGG + chr5_1:60696806-60696825 Msa0741180:three_prime_UTR 50.0%
TACCTGCAGCTGCATGGTAT+TGG - chr5_1:60696811-60696830 None:intergenic 50.0%
CATTACTACCTGCAGCTGCA+TGG - chr5_1:60696817-60696836 None:intergenic 50.0%
!! CTTCCTCCAAGAGCACTAGC+AGG - chr5_1:60689783-60689802 None:intergenic 55.0%
CTGCTAGTGCTCTTGGAGGA+AGG + chr5_1:60689781-60689800 Msa0741180:intron 55.0%
CGAAGGCAGGGAAGACCTTA+GGG - chr5_1:60689839-60689858 None:intergenic 55.0%
TCGAAGGCAGGGAAGACCTT+AGG - chr5_1:60689840-60689859 None:intergenic 55.0%
AAGGTCTTCCCTGCCTTCGA+CGG + chr5_1:60689840-60689859 Msa0741180:intron 55.0%
! GGAGTAGCCGACTCCAAAAG+TGG + chr5_1:60689946-60689965 Msa0741180:intron 55.0%
GGCTGTGTGATGTGCATTGC+TGG + chr5_1:60691406-60691425 Msa0741180:CDS 55.0%
!! CTTGTTAAAGAGTGCCCCCG+GGG + chr5_1:60691760-60691779 Msa0741180:intron 55.0%
!! ATCCTTAAAGAGTGCCCCGG+GGG - chr5_1:60691777-60691796 None:intergenic 55.0%
!! GATCCTTAAAGAGTGCCCCG+GGG - chr5_1:60691778-60691797 None:intergenic 55.0%
!! GGATCCTTAAAGAGTGCCCC+GGG - chr5_1:60691779-60691798 None:intergenic 55.0%
!! GGGATCCTTAAAGAGTGCCC+CGG - chr5_1:60691780-60691799 None:intergenic 55.0%
AATGTTAACGAGTGCCCCCG+GGG - chr5_1:60691907-60691926 None:intergenic 55.0%
! CAAATGGTGGGACCCTTTCC+CGG + chr5_1:60693741-60693760 Msa0741180:intron 55.0%
AATACGCAGGGTCCGGGAAA+GGG - chr5_1:60693756-60693775 None:intergenic 55.0%
TTTCCCGGACCCTGCGTATT+CGG + chr5_1:60693756-60693775 Msa0741180:intron 55.0%
CACAAAGCTCCCGAATACGC+AGG - chr5_1:60693769-60693788 None:intergenic 55.0%
ATCCTCTCACGTCATACCGC+CGG + chr5_1:60694424-60694443 Msa0741180:intron 55.0%
!! GGGCTATTTTGGGGGTTGAG+TGG - chr5_1:60695034-60695053 None:intergenic 55.0%
AGGCCTCATTGTGCCTTGAC+CGG + chr5_1:60695146-60695165 Msa0741180:intron 55.0%
! AGTGCATTTAGGGCCGGTCA+AGG - chr5_1:60695162-60695181 None:intergenic 55.0%
AGAGAGGGCTTGAGTCCGAG+AGG + chr5_1:60689743-60689762 Msa0741180:intron 60.0%
GCTTGAGTCCGAGAGGTCCT+CGG + chr5_1:60689750-60689769 Msa0741180:intron 60.0%
TCGAGCCCTGCTAGTGCTCT+TGG + chr5_1:60689774-60689793 Msa0741180:intron 60.0%
AGCCCTGCTAGTGCTCTTGG+AGG + chr5_1:60689777-60689796 Msa0741180:intron 60.0%
AGGTCTTCCCTGCCTTCGAC+GGG + chr5_1:60689841-60689860 Msa0741180:intron 60.0%
GGATAGCAGGATCCGGGTAG+CGG + chr5_1:60689968-60689987 Msa0741180:intron 60.0%
GATAGCAGGATCCGGGTAGC+GGG + chr5_1:60689969-60689988 Msa0741180:intron 60.0%
ATAGCAGGATCCGGGTAGCG+GGG + chr5_1:60689970-60689989 Msa0741180:intron 60.0%
TCCTTTGTGACCCCGCTACC+CGG - chr5_1:60689983-60690002 None:intergenic 60.0%
ACAGTGTTATCGGCGGCGGA+TGG - chr5_1:60690873-60690892 None:intergenic 60.0%
CACGACAGTGTTATCGGCGG+CGG - chr5_1:60690877-60690896 None:intergenic 60.0%
CACCCTCTCCCCCAGTTGTA+TGG + chr5_1:60693067-60693086 Msa0741180:intron 60.0%
GAATACGCAGGGTCCGGGAA+AGG - chr5_1:60693757-60693776 None:intergenic 60.0%
TTCCCGGACCCTGCGTATTC+GGG + chr5_1:60693757-60693776 Msa0741180:intron 60.0%
AACCGGCGGTATGACGTGAG+AGG - chr5_1:60694429-60694448 None:intergenic 60.0%
GGCTCGAACCGAGGACCTCT+CGG - chr5_1:60689761-60689780 None:intergenic 65.0%
CACTAGCAGGGCTCGAACCG+AGG - chr5_1:60689770-60689789 None:intergenic 65.0%
GGTCTTCCCTGCCTTCGACG+GGG + chr5_1:60689842-60689861 Msa0741180:intron 65.0%
GTCTTCCCTGCCTTCGACGG+GGG + chr5_1:60689843-60689862 Msa0741180:intron 65.0%
TGATGCCCCCGTCGAAGGCA+GGG - chr5_1:60689851-60689870 None:intergenic 65.0%
ATGATGCCCCCGTCGAAGGC+AGG - chr5_1:60689852-60689871 None:intergenic 65.0%
GTCGATCCCGGATAGCAGCG+CGG + chr5_1:60689925-60689944 Msa0741180:intron 65.0%
GCTACTCCGCGCTGCTATCC+GGG - chr5_1:60689934-60689953 None:intergenic 65.0%
GGCTACTCCGCGCTGCTATC+CGG - chr5_1:60689935-60689954 None:intergenic 65.0%
!! TCCGGGTAGCGGGGTCACAA+AGG + chr5_1:60689979-60689998 Msa0741180:intron 65.0%
TGGAGCGGGAACCTGGGAAC+TGG + chr5_1:60690242-60690261 Msa0741180:intron 65.0%
GCTGGCATGCTCCAGTTCCC+AGG - chr5_1:60690256-60690275 None:intergenic 65.0%
!! TAGGGCGCCGCAATCTGCCA+TGG - chr5_1:60690779-60690798 None:intergenic 65.0%
GTGTTATCGGCGGCGGATGG+CGG - chr5_1:60690870-60690889 None:intergenic 65.0%
! TGCCCCCGGGGCACTCTTTA+AGG + chr5_1:60691772-60691791 Msa0741180:intron 65.0%
CTCCCGAATACGCAGGGTCC+GGG - chr5_1:60693762-60693781 None:intergenic 65.0%
GCTCCCGAATACGCAGGGTC+CGG - chr5_1:60693763-60693782 None:intergenic 65.0%
!! GGTTGAGTGGAGTGGGCTGG+GGG - chr5_1:60695021-60695040 None:intergenic 65.0%
!! GGGTTGAGTGGAGTGGGCTG+GGG - chr5_1:60695022-60695041 None:intergenic 65.0%
! GGGGTTGAGTGGAGTGGGCT+GGG - chr5_1:60695023-60695042 None:intergenic 65.0%
GGGCCGGTCAAGGCACAATG+AGG - chr5_1:60695152-60695171 None:intergenic 65.0%
GGGGATGATGCCCCCGTCGA+AGG - chr5_1:60689856-60689875 None:intergenic 70.0%
!! CGACGGGGGCATCATCCCCT+TGG + chr5_1:60689857-60689876 Msa0741180:intron 70.0%
GGGGGTTGAGTGGAGTGGGC+TGG - chr5_1:60695024-60695043 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 60689159 60697419 60689159 ID=Msa0741180;Name=Msa0741180
chr5_1 mRNA 60689159 60697419 60689159 ID=Msa0741180-mRNA-1;Parent=Msa0741180;Name=Msa0741180-mRNA-1;_AED=0.15;_eAED=0.15;_QI=116|0.87|0.77|1|1|1|9|696|366
chr5_1 exon 60689159 60689404 60689159 ID=Msa0741180-mRNA-1:exon:17550;Parent=Msa0741180-mRNA-1
chr5_1 exon 60689516 60689594 60689516 ID=Msa0741180-mRNA-1:exon:17551;Parent=Msa0741180-mRNA-1
chr5_1 exon 60691125 60691244 60691125 ID=Msa0741180-mRNA-1:exon:17552;Parent=Msa0741180-mRNA-1
chr5_1 exon 60691351 60691511 60691351 ID=Msa0741180-mRNA-1:exon:17553;Parent=Msa0741180-mRNA-1
chr5_1 exon 60691589 60691716 60691589 ID=Msa0741180-mRNA-1:exon:17554;Parent=Msa0741180-mRNA-1
chr5_1 exon 60693205 60693342 60693205 ID=Msa0741180-mRNA-1:exon:17555;Parent=Msa0741180-mRNA-1
chr5_1 exon 60696167 60696259 60696167 ID=Msa0741180-mRNA-1:exon:17556;Parent=Msa0741180-mRNA-1
chr5_1 exon 60696366 60696486 60696366 ID=Msa0741180-mRNA-1:exon:17557;Parent=Msa0741180-mRNA-1
chr5_1 exon 60696593 60697419 60696593 ID=Msa0741180-mRNA-1:exon:17558;Parent=Msa0741180-mRNA-1
chr5_1 five_prime_UTR 60689159 60689274 60689159 ID=Msa0741180-mRNA-1:five_prime_utr;Parent=Msa0741180-mRNA-1
chr5_1 CDS 60689275 60689404 60689275 ID=Msa0741180-mRNA-1:cds;Parent=Msa0741180-mRNA-1
chr5_1 CDS 60689516 60689594 60689516 ID=Msa0741180-mRNA-1:cds;Parent=Msa0741180-mRNA-1
chr5_1 CDS 60691125 60691244 60691125 ID=Msa0741180-mRNA-1:cds;Parent=Msa0741180-mRNA-1
chr5_1 CDS 60691351 60691511 60691351 ID=Msa0741180-mRNA-1:cds;Parent=Msa0741180-mRNA-1
chr5_1 CDS 60691589 60691716 60691589 ID=Msa0741180-mRNA-1:cds;Parent=Msa0741180-mRNA-1
chr5_1 CDS 60693205 60693342 60693205 ID=Msa0741180-mRNA-1:cds;Parent=Msa0741180-mRNA-1
chr5_1 CDS 60696167 60696259 60696167 ID=Msa0741180-mRNA-1:cds;Parent=Msa0741180-mRNA-1
chr5_1 CDS 60696366 60696486 60696366 ID=Msa0741180-mRNA-1:cds;Parent=Msa0741180-mRNA-1
chr5_1 CDS 60696593 60696723 60696593 ID=Msa0741180-mRNA-1:cds;Parent=Msa0741180-mRNA-1
chr5_1 three_prime_UTR 60696724 60697419 60696724 ID=Msa0741180-mRNA-1:three_prime_utr;Parent=Msa0741180-mRNA-1
Gene Sequence

>Msa0741180

ATGGGTCTGTCGAATGAGAATGTAACAGGTCTCATTCTAGCGTTGGCTTCAAGTTTGTTCATTGGTTCAAGTTTCATTATCAAGAAACAAGGTCTTCGAAGAGCAGCTTCTACTTATGGTGTTAGGGCTGGTGTTGGTGGTTATTATTATCTATTGGAACCACTATGGTGGGTAGGGATGATCACAAGTAAGCTTTTCCTTCTTCCTAGAATCTTTTTCTGTATGGTCTCTTGTTCAGTGATTGTAGGAGAGGTTGCAAATTTTGTTGCATATGCTTTTGCTCCTGCTGTTCTAGTTACCCCTCTCGGTGCATTAAGTATTATTGTGAGTGCTGTTTTAGCTGACCTTATTCTGAAAGAGAGGCTACACAAGCTTGGGATATTAGGCTGTGTGATGTGCATTGCTGGTTCTATCATTATTGTTATTCACGCTCCTAAAGAGGATCCTATCACATCTGTTCTGGAGATATGGAATATGGCTACTCAACCAGCATTCCTAGCATATGTTGGGTCTGTATTAGTACTGGTCTTCTTTATGGTTTTCCATTTTGCACCAACATGTGGACATACCAATGTCCTAGTTTATACAGGCATTTGTTCGTTGATGGGTTCCCTCTCTGTGATGAGCGTCAAAGCACTTGGAACTTCTTTGAAGTTAACTTTTGAAGGGAACAATCAGTTAGTTTATCCACAGACATGGTTTTTCATGTTAGTTGTGGCCATATGCGTCGTCATGCAAATGAATTATCTTAATAAGGCACTTGACACCTTCAACACGGCAATCGTGTCTCCTATATACTATGTCATGTTTACAACACTTACAATATTGGCCAGTGTAATAATGTTCAAGGATTGGGATGGCCAAAGTTTTTCAACTATTATGTCAGAAATATGTGGCTTTATTGTTGTACTCTCTGGCACAATAATGTTACATCTGACCAAGGACTTCGAGAGAAGCCATTCTTTTAGAGGTGGCGGCTTGCCTTCTTCGCCTACATTATCTGTCCGGCTTTATACCGGAAATGGGGACTCGTTACTTAAGGAAGATGAAGAGAACGAATCTCCTGAGGATATGTGCTCAAGAAGACAAGATTTATGTTAG
Protein sequence

>Msa0741180

MGLSNENVTGLILALASSLFIGSSFIIKKQGLRRAASTYGVRAGVGGYYYLLEPLWWVGMITSKLFLLPRIFFCMVSCSVIVGEVANFVAYAFAPAVLVTPLGALSIIVSAVLADLILKERLHKLGILGCVMCIAGSIIIVIHAPKEDPITSVLEIWNMATQPAFLAYVGSVLVLVFFMVFHFAPTCGHTNVLVYTGICSLMGSLSVMSVKALGTSLKLTFEGNNQLVYPQTWFFMLVVAICVVMQMNYLNKALDTFNTAIVSPIYYVMFTTLTILASVIMFKDWDGQSFSTIMSEICGFIVVLSGTIMLHLTKDFERSHSFRGGGLPSSPTLSVRLYTGNGDSLLKEDEENESPEDMCSRRQDLC*