AlfalfaGEDB | Msa0741910

M. sativa cultivar zhongmu-4 / Msa0741910

KEGG: -
GO: GO:0000165 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004707 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0010468 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019222 GO:0019538 GO:0023014 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0071704 GO:0140096 GO:1901564
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0741910	XP_013454379.1	92.754	483	15	1	1	463	1	483	0.0	920

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0741910	sp\|Q5ZCI1\|MPK10_ORYSJ	72.277	505	105	7	2	473	5	507	0.0	720

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0741910	A0A072URC1	92.754	483	15	1	1	463	1	483	0.0	920

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0741910	Msa0786260	0.827595	1.434099e-54	-8.615850e-47
Msa0741910	Msa0799370	0.835410	1.705179e-56	-8.615850e-47
Msa0741910	Msa0862110	0.832030	1.192666e-55	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0741910	MtrunA17_Chr5g0443351	92.754	483	15	1	1	463	1	483	0.0	920
Msa0741910	MtrunA17_Chr3g0096631	79.472	492	70	4	3	464	6	496	0.0	768
Msa0741910	MtrunA17_Chr8g0359091	66.191	491	133	6	1	459	5	494	0.0	646
Msa0741910	MtrunA17_Chr2g0314321	64.567	508	128	5	2	459	5	510	0.0	636
Msa0741910	MtrunA17_Chr2g0287271	63.116	507	148	7	2	470	5	510	0.0	636
Msa0741910	MtrunA17_Chr4g0065851	65.227	463	136	2	2	439	5	467	0.0	632
Msa0741910	MtrunA17_Chr8g0392811	63.043	460	143	4	9	441	104	563	0.0	610
Msa0741910	MtrunA17_Chr6g0482681	69.343	411	101	2	5	390	72	482	0.0	587
Msa0741910	MtrunA17_Chr8g0387401	47.401	327	153	4	28	338	58	381	4.00e-104	316
Msa0741910	MtrunA17_Chr4g0045841	46.789	327	156	4	28	339	61	384	8.51e-104	315

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0741910	AT2G42880.1	70.363	496	115	5	2	468	5	497	696
Msa0741910	AT2G42880.2	74.944	447	84	3	2	420	5	451	676
Msa0741910	AT3G14720.1	65.476	504	140	6	2	472	5	507	640
Msa0741910	AT1G53510.1	64.837	492	135	4	2	456	5	495	632
Msa0741910	AT5G19010.1	62.295	488	140	7	3	448	6	491	617
Msa0741910	AT3G14720.2	73.594	409	84	2	2	386	5	413	610
Msa0741910	AT3G14720.3	73.594	409	84	2	2	386	5	413	610
Msa0741910	AT1G73670.1	67.308	416	111	2	11	401	79	494	593
Msa0741910	AT3G18040.4	59.880	501	148	7	5	458	115	609	585
Msa0741910	AT3G18040.3	67.299	422	109	3	5	401	115	532	585

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Find 180 sgRNAs with CRISPR-Local

Find 455 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAAAGGCTATTTGCAG+TGG	0.587486	5_1:+61692466	Msa0741910:three_prime_UTR
AAAAGAAATGCAGAAAGGAA+AGG	0.604422	5_1:+61685828	Msa0741910:exon
AAACAAAAGTTTATTGTTTA+TGG	0.091509	5_1:+61692775	Msa0741910:three_prime_UTR
AAACAAACCTCTTCAGCAGT+AGG	0.592998	5_1:-61689172	None:intergenic
AAACACCTGGTAAAGTTGTT+AGG	0.432286	5_1:+61691407	Msa0741910:CDS
AAACCTCTTCAGCAGTAGGC+CGG	0.571344	5_1:-61689168	None:intergenic
AAACTGGTGAAATACTGAGA+TGG	0.699431	5_1:+61691715	Msa0741910:three_prime_UTR
AAACTTAAAATCTGTGATTT+TGG	0.087017	5_1:+61688066	Msa0741910:CDS
AAAGCAGTTCGCTCATCTCG+AGG	0.625498	5_1:+61690108	Msa0741910:CDS
AACAAACTTGATGCAGTCTA+AGG	0.326477	5_1:+61692318	Msa0741910:three_prime_UTR

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CTTTGTCCATTCAAAATTGT+GGG	+	chr5_1:61685593-61685612	Msa0741910:five_prime_UTR	30.0%
TTACCAAAATTAACCCTTCA+AGG	-	chr5_1:61685702-61685721	None:intergenic	30.0%
AAAAGAAATGCAGAAAGGAA+AGG	+	chr5_1:61685828-61685847	Msa0741910:exon	30.0%
AGTGAATTATGAAAGTTGCA+AGG	+	chr5_1:61685959-61685978	Msa0741910:intron	30.0%
AGTGAATTATGAAAGTTGCA+AGG	+	chr5_1:61685959-61685978	Msa0741910:intron	30.0%
TAAGTTAGGTATATCCTACA+TGG	+	chr5_1:61686437-61686456	Msa0741910:intron	30.0%
AATTAGAAGGAACTGTGAAT+TGG	+	chr5_1:61686489-61686508	Msa0741910:intron	30.0%
AAACATGTATATGTACACTG+TGG	-	chr5_1:61686675-61686694	None:intergenic	30.0%
AGATATCAGACTCACTAATA+AGG	-	chr5_1:61686722-61686741	None:intergenic	30.0%
ATACAAAAGAAAAGCTGAAC+TGG	-	chr5_1:61687921-61687940	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_1	gene	61685383	61692813	61685383	ID=Msa0741910;Name=Msa0741910
chr5_1	mRNA	61685383	61692813	61685383	ID=Msa0741910-mRNA-1;Parent=Msa0741910;Name=Msa0741910-mRNA-1;_AED=0.12;_eAED=0.12;_QI=452\|0.87\|1\|1\|1\|0.88\|9\|1267\|479
chr5_1	exon	61685383	61685849	61685383	ID=Msa0741910-mRNA-1:exon:17959;Parent=Msa0741910-mRNA-1
chr5_1	exon	61687115	61687523	61687115	ID=Msa0741910-mRNA-1:exon:17960;Parent=Msa0741910-mRNA-1
chr5_1	exon	61688010	61688137	61688010	ID=Msa0741910-mRNA-1:exon:17961;Parent=Msa0741910-mRNA-1
chr5_1	exon	61688796	61688945	61688796	ID=Msa0741910-mRNA-1:exon:17962;Parent=Msa0741910-mRNA-1
chr5_1	exon	61689031	61689186	61689031	ID=Msa0741910-mRNA-1:exon:17963;Parent=Msa0741910-mRNA-1
chr5_1	exon	61689789	61689985	61689789	ID=Msa0741910-mRNA-1:exon:17964;Parent=Msa0741910-mRNA-1
chr5_1	exon	61690090	61690191	61690090	ID=Msa0741910-mRNA-1:exon:17965;Parent=Msa0741910-mRNA-1
chr5_1	exon	61691181	61691323	61691181	ID=Msa0741910-mRNA-1:exon:17966;Parent=Msa0741910-mRNA-1
chr5_1	exon	61691407	61692813	61691407	ID=Msa0741910-mRNA-1:exon:17967;Parent=Msa0741910-mRNA-1
chr5_1	five_prime_UTR	61685383	61685834	61685383	ID=Msa0741910-mRNA-1:five_prime_utr;Parent=Msa0741910-mRNA-1
chr5_1	CDS	61685835	61685849	61685835	ID=Msa0741910-mRNA-1:cds;Parent=Msa0741910-mRNA-1
chr5_1	CDS	61687115	61687523	61687115	ID=Msa0741910-mRNA-1:cds;Parent=Msa0741910-mRNA-1
chr5_1	CDS	61688010	61688137	61688010	ID=Msa0741910-mRNA-1:cds;Parent=Msa0741910-mRNA-1
chr5_1	CDS	61688796	61688945	61688796	ID=Msa0741910-mRNA-1:cds;Parent=Msa0741910-mRNA-1
chr5_1	CDS	61689031	61689186	61689031	ID=Msa0741910-mRNA-1:cds;Parent=Msa0741910-mRNA-1
chr5_1	CDS	61689789	61689985	61689789	ID=Msa0741910-mRNA-1:cds;Parent=Msa0741910-mRNA-1
chr5_1	CDS	61690090	61690191	61690090	ID=Msa0741910-mRNA-1:cds;Parent=Msa0741910-mRNA-1
chr5_1	CDS	61691181	61691323	61691181	ID=Msa0741910-mRNA-1:cds;Parent=Msa0741910-mRNA-1
chr5_1	CDS	61691407	61691546	61691407	ID=Msa0741910-mRNA-1:cds;Parent=Msa0741910-mRNA-1
chr5_1	three_prime_UTR	61691547	61692813	61691547	ID=Msa0741910-mRNA-1:three_prime_utr;Parent=Msa0741910-mRNA-1

Gene Sequence

>Msa0741910

ATGCAGAAAGGAAAGAAATCAATGGAGATGGAATTTTTCTCGGAATATGGTGATGCCAACCGGTATAAAATTCAAGAAGTAGTCGGGAAAGGTAGTTACGGTACTGTTTGTTCGGCTGTCGACACTCATACTGGTGAAAAGGTTGCAATAAAAAAGGTGCATGGTATCTTTGAGCATATATCCGACGCTGCACGTATTCTTCGTGAGATAAAGTTGCTCAGACTTCTTCGACATCCTGATATTGTTGAAATTAAGCACATTATGTTGCCTCCTTCTATCAAGGACTTCAAAGATATTTATGTTGTTTTTGAGCTCTTGGAGTCTGATCTGCATCAAGTCATTAAAGCCAATACCGACTTAACAAAAGAACACTATCAGTTTTTTCTTTACCAGTTACTTCGAGCATTGAAGTATATTCACACCGCAAATGTCTATCATCGAGACTTGAAGCCAAAGAATATACTGGCCAATGCAAACTGTAAACTTAAAATCTGTGATTTTGGGTTAGCTAGAGTTGCTTTCAGCGACACTCCGACTACTGTATTTTGGACGTATACTCCGGCAATTGATATTTGGAGTATAGGTTGCATCTTTGCCGAAATATTAATTGGGAGACCACTTTTTCCAGGAAAAAGTGTTGTCCATCAGTTGGATCTGATCACAGATCTGCTTGGAACCCCCTCAATGGATAGTATATCTCGGGTACGCAATGATAAAGCAAGAAGATACCTAACTAGCATGAGGAAAAAGCAACCTGTACCATTTGCACAAAAATTTCCTAATGCAGATCATTTATCACTACGACTACTGGAAAGGTTGCTCGCCTTTGATCCAAAAGACCGGCCTACTGCTGAAGAGGCATTAGCTCATCCTTACTTCAAGGGACTTGCAAAAATTGAAAGGGAACCATCCTGCCAGCCCATTACACAAATGGAGTTTGAATTTGAAAAGAAAAGAGTAACAAAGGGAGAAATTCGAGATTTAATCTTCAATGAGATTCTGGAGTATCATCCTCAACTAAATGGAACTGAGAGAACTAATTTTCTTTATCCAAGTGCTGTTGATCAATTCGGAAAGCAGTTCGCTCATCTCGAGGAAACTGGTGATAAAAGTGATCCAGTTGTGCCACTTGATCGAAAACATGCATCACTTCCCAGATCAACAATTGTACATTCAAATATGACACCCCAAAAAGAGCAGTCATATATTGCTTCAAGCAAAAACCGGCAAACAACTGATGAGTATAATACTAATTATGCGGAATCCAGTGGCCTTCGGGGACTGCAAGTAATTCCACAGGAAACACCTGGTAAAGTTGTTAGGCCAGTTGTTAAATATGAGCATGGGAGTATTGTCAGTGATTCATATGATTCCAGGACATCTATGAGAGGTTATCTTCTTCCTTCTCAATCTATCCCCCTACATATTAATGTCAAATAA

Protein sequence

>Msa0741910

MQKGKKSMEMEFFSEYGDANRYKIQEVVGKGSYGTVCSAVDTHTGEKVAIKKVHGIFEHISDAARILREIKLLRLLRHPDIVEIKHIMLPPSIKDFKDIYVVFELLESDLHQVIKANTDLTKEHYQFFLYQLLRALKYIHTANVYHRDLKPKNILANANCKLKICDFGLARVAFSDTPTTVFWTYTPAIDIWSIGCIFAEILIGRPLFPGKSVVHQLDLITDLLGTPSMDSISRVRNDKARRYLTSMRKKQPVPFAQKFPNADHLSLRLLERLLAFDPKDRPTAEEALAHPYFKGLAKIEREPSCQPITQMEFEFEKKRVTKGEIRDLIFNEILEYHPQLNGTERTNFLYPSAVDQFGKQFAHLEETGDKSDPVVPLDRKHASLPRSTIVHSNMTPQKEQSYIASSKNRQTTDEYNTNYAESSGLRGLQVIPQETPGKVVRPVVKYEHGSIVSDSYDSRTSMRGYLLPSQSIPLHINVK*