AlfalfaGEDB | Msa0862110

M. sativa cultivar zhongmu-4 / Msa0862110

KEGG: -
GO: GO:0000165 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004707 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0010468 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019222 GO:0019538 GO:0023014 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0071704 GO:0140096 GO:1901564
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0862110	XP_013454379.1	92.961	483	14	1	1	463	1	483	0.0	922

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0862110	sp\|Q5ZCI1\|MPK10_ORYSJ	72.475	505	104	7	2	473	5	507	0.0	722

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0862110	G7K3C9	92.577	485	16	1	5	469	3	487	0.0	922

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0003300	Msa0862110	0.806390	8.419851e-50	-8.615850e-47
Msa0003890	Msa0862110	0.800937	1.140314e-48	-8.615850e-47
Msa0006070	Msa0862110	0.828827	7.239009e-55	-8.615850e-47
Msa0006110	Msa0862110	0.814649	1.383231e-51	-8.615850e-47
Msa0007080	Msa0862110	0.801719	7.885029e-49	-8.615850e-47
Msa0007440	Msa0862110	0.808709	2.711194e-50	-8.615850e-47
Msa0011170	Msa0862110	0.825580	4.338665e-54	-8.615850e-47
Msa0014710	Msa0862110	0.802815	4.691275e-49	-8.615850e-47
Msa0020930	Msa0862110	0.837022	6.639424e-57	-8.615850e-47
Msa0032110	Msa0862110	0.800139	1.658063e-48	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0862110	MtrunA17_Chr5g0443351	92.961	483	14	1	1	463	1	483	0.0	922
Msa0862110	MtrunA17_Chr3g0096631	79.675	492	69	4	3	464	6	496	0.0	770
Msa0862110	MtrunA17_Chr8g0359091	66.599	491	131	6	1	459	5	494	0.0	648
Msa0862110	MtrunA17_Chr2g0314321	64.567	508	128	5	2	459	5	510	0.0	637
Msa0862110	MtrunA17_Chr2g0287271	63.314	507	147	7	2	470	5	510	0.0	636
Msa0862110	MtrunA17_Chr4g0065851	65.443	463	135	2	2	439	5	467	0.0	632
Msa0862110	MtrunA17_Chr8g0392811	62.826	460	144	4	9	441	104	563	0.0	609
Msa0862110	MtrunA17_Chr6g0482681	69.343	411	101	2	5	390	72	482	0.0	588
Msa0862110	MtrunA17_Chr8g0387401	47.401	327	153	4	28	338	58	381	1.65e-105	319
Msa0862110	MtrunA17_Chr4g0045841	47.095	327	155	4	28	339	61	384	2.20e-105	319

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0862110	AT2G42880.1	70.363	496	115	5	2	468	5	497	696
Msa0862110	AT2G42880.2	74.944	447	84	3	2	420	5	451	677
Msa0862110	AT3G14720.1	65.408	503	142	5	2	472	5	507	645
Msa0862110	AT1G53510.1	65.041	492	134	4	2	456	5	495	633
Msa0862110	AT5G19010.1	62.372	489	140	7	2	448	5	491	618
Msa0862110	AT3G14720.2	74.083	409	82	2	2	386	5	413	614
Msa0862110	AT3G14720.3	74.083	409	82	2	2	386	5	413	614
Msa0862110	AT1G73670.1	67.308	416	111	2	11	401	79	494	593
Msa0862110	AT3G18040.4	67.536	422	108	3	5	401	115	532	586
Msa0862110	AT3G18040.3	67.536	422	108	3	5	401	115	532	585

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Find 180 sgRNAs with CRISPR-Local

Find 442 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAAAGGCTCTTTGCAG+TGG	0.578157	5_4:+61699098	Msa0862110:three_prime_UTR
AAAAGAAATGCAGAAAGGAA+AGG	0.604422	5_4:+61692655	Msa0862110:exon
AAACAAAAGTTTATTGTTTA+TGG	0.091509	5_4:+61699407	Msa0862110:three_prime_UTR
AAACAAACCTCTTCAGCAGT+AGG	0.592998	5_4:-61695811	None:intergenic
AAACACCTGGTAAAGTTGTT+AGG	0.432286	5_4:+61698039	Msa0862110:CDS
AAACCTCTTCAGCAGTAGGC+CGG	0.571344	5_4:-61695807	None:intergenic
AAACTGGTGAAATACTGAGA+TGG	0.699431	5_4:+61698347	Msa0862110:three_prime_UTR
AAACTTAAAATCTGTGATTT+TGG	0.087017	5_4:+61694706	Msa0862110:CDS
AAAGCAGTTCGCTCATCTCG+AGG	0.625498	5_4:+61696740	Msa0862110:CDS
AAATAATCCCTAAACTCTTA+CGG	0.473343	5_4:-61698503	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CTTTGTCCATTCAAAATTGT+GGG	+	chr5_4:61692421-61692440	Msa0862110:five_prime_UTR	30.0%
TTACCAAAATTAACCCTTCA+AGG	-	chr5_4:61692530-61692549	None:intergenic	30.0%
AAAAGAAATGCAGAAAGGAA+AGG	+	chr5_4:61692655-61692674	Msa0862110:exon	30.0%
AGTGAATTATGAAAGTTGCA+AGG	+	chr5_4:61692786-61692805	Msa0862110:intron	30.0%
AGTGAATTATGAAAGTTGCA+AGG	+	chr5_4:61692786-61692805	Msa0862110:intron	30.0%
TAAGTTAGGTATATCCTACA+TGG	+	chr5_4:61693262-61693281	Msa0862110:intron	30.0%
AATTAGAAGGAACTGTGAAT+TGG	+	chr5_4:61693314-61693333	Msa0862110:intron	30.0%
ATATCACAGACTCACTAATA+AGG	-	chr5_4:61693547-61693566	None:intergenic	30.0%
ATACAAAAGAAAAGCTGAAC+TGG	-	chr5_4:61694561-61694580	None:intergenic	30.0%
TATAGGATTATGTTGCTACA+AGG	+	chr5_4:61694890-61694909	Msa0862110:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_4	gene	61692211	61699445	61692211	ID=Msa0862110;Name=Msa0862110
chr5_4	mRNA	61692211	61699445	61692211	ID=Msa0862110-mRNA-1;Parent=Msa0862110;Name=Msa0862110-mRNA-1;_AED=0.12;_eAED=0.12;_QI=451\|0.87\|1\|1\|1\|1\|9\|1267\|479
chr5_4	exon	61692211	61692676	61692211	ID=Msa0862110-mRNA-1:exon:19173;Parent=Msa0862110-mRNA-1
chr5_4	exon	61693758	61694166	61693758	ID=Msa0862110-mRNA-1:exon:19174;Parent=Msa0862110-mRNA-1
chr5_4	exon	61694650	61694777	61694650	ID=Msa0862110-mRNA-1:exon:19175;Parent=Msa0862110-mRNA-1
chr5_4	exon	61695435	61695584	61695435	ID=Msa0862110-mRNA-1:exon:19176;Parent=Msa0862110-mRNA-1
chr5_4	exon	61695670	61695825	61695670	ID=Msa0862110-mRNA-1:exon:19177;Parent=Msa0862110-mRNA-1
chr5_4	exon	61696417	61696613	61696417	ID=Msa0862110-mRNA-1:exon:19178;Parent=Msa0862110-mRNA-1
chr5_4	exon	61696722	61696823	61696722	ID=Msa0862110-mRNA-1:exon:19179;Parent=Msa0862110-mRNA-1
chr5_4	exon	61697813	61697955	61697813	ID=Msa0862110-mRNA-1:exon:19180;Parent=Msa0862110-mRNA-1
chr5_4	exon	61698039	61699445	61698039	ID=Msa0862110-mRNA-1:exon:19181;Parent=Msa0862110-mRNA-1
chr5_4	five_prime_UTR	61692211	61692661	61692211	ID=Msa0862110-mRNA-1:five_prime_utr;Parent=Msa0862110-mRNA-1
chr5_4	CDS	61692662	61692676	61692662	ID=Msa0862110-mRNA-1:cds;Parent=Msa0862110-mRNA-1
chr5_4	CDS	61693758	61694166	61693758	ID=Msa0862110-mRNA-1:cds;Parent=Msa0862110-mRNA-1
chr5_4	CDS	61694650	61694777	61694650	ID=Msa0862110-mRNA-1:cds;Parent=Msa0862110-mRNA-1
chr5_4	CDS	61695435	61695584	61695435	ID=Msa0862110-mRNA-1:cds;Parent=Msa0862110-mRNA-1
chr5_4	CDS	61695670	61695825	61695670	ID=Msa0862110-mRNA-1:cds;Parent=Msa0862110-mRNA-1
chr5_4	CDS	61696417	61696613	61696417	ID=Msa0862110-mRNA-1:cds;Parent=Msa0862110-mRNA-1
chr5_4	CDS	61696722	61696823	61696722	ID=Msa0862110-mRNA-1:cds;Parent=Msa0862110-mRNA-1
chr5_4	CDS	61697813	61697955	61697813	ID=Msa0862110-mRNA-1:cds;Parent=Msa0862110-mRNA-1
chr5_4	CDS	61698039	61698178	61698039	ID=Msa0862110-mRNA-1:cds;Parent=Msa0862110-mRNA-1
chr5_4	three_prime_UTR	61698179	61699445	61698179	ID=Msa0862110-mRNA-1:three_prime_utr;Parent=Msa0862110-mRNA-1

Gene Sequence

>Msa0862110

ATGCAGAAAGGAAAGAAATCAATGGAGATGGAATTTTTCTCGGAATATGGTGATGCCAACCGGTATAAAATTCAAGAAGTAGTCGGGAAAGGTAGTTACGGTACTGTTTGTTCGGCTGTCGACACTCATACTGGTGAAAAGGTTGCAATAAAAAAGGTGCATGGTATCTTTGAGCATATATCCGACGCTGCACGTATTCTTCGTGAGATAAAGTTGCTCAGACTTCTTCGACATCCTGATATTGTTGAAATTAAGCACATTATGTTGCCTCCTTCTATCAAGGACTTCAAAGATATTTATGTTGTTTTTGAGCTCTTGGAGTCTGATCTGCATCAAGTCATTAAAGCCAATACCGACTTAACAAAAGAACACTATCAGTTTTTTCTTTACCAGTTACTTCGAGCATTGAAGTATATTCACACCGCAAATGTCTATCATCGAGACTTGAAGCCAAAGAATATACTGGCCAATGCAAACTGTAAACTTAAAATCTGTGATTTTGGGTTAGCTAGAGTTGCTTTCAGCGACACTCCGACTACTGTATTTTGGACGTATACTCCGGCAATTGATATTTGGAGTATAGGTTGCATCTTTGCCGAAGTATTAATTGGGAGACCACTTTTTCCAGGAAAAAGTGTTGTCCATCAGTTGGATCTGATCACAGATCTGCTTGGAACCCCCTCAATGGATAGTATATCTCGGGTACGCAATGATAAAGCAAGAAGATACCTAACTAGCATGAGGAAAAAGCAACCTGTACCATTTGCACAAAAATTTCCTAATGCAGATCCTTTATCACTACGACTACTGGAAAGGTTGCTCGCCTTTGATCCAAAAGACCGGCCTACTGCTGAAGAGGCATTAGCTCATCCTTACTTCAAGGGACTTGCAAAAATTGAAAGGGAACCATCCTGCCAGCCCATTACACAAATGGAGTTTGAATTTGAAAAGAAAAGAATAACAAAGGGAGAAATTCGAGATTTAATCTTCAATGAGATTCTGGAGTATCATCCTCAACTAAATAGAACTGAGAGAACTAATTTTCTTTATCCAAGTGCTGTTGATCAATTCGGAAAGCAGTTCGCTCATCTCGAGGAAACTGGTGATAAAAGTGATCCAGTTGTGCCACTTGATCGAAAACATGCATCACTTCCCAGATCAACAATTGTACATTCAAATATGACACCCCAAAAAGAGCAGTCATATATTGCTTCCAGCAAAAACCGGCAAACAACTGAGGAGTATAATACTAATTATGCGGAATCCAGTGGCCTTCGGGGACTGCAAGTAATTCCACAGGAAACACCTGGTAAAGTTGTTAGGCCAGTTGTTAAATATGAGCATGGGAGTATTGTCAGTGATTCATATGATTCCAGGACATCTATGAGAGGTTATCTTCTTCCTTCTCAATCTATCCCCCTACATATTAATGTCAAATAA

Protein sequence

>Msa0862110

MQKGKKSMEMEFFSEYGDANRYKIQEVVGKGSYGTVCSAVDTHTGEKVAIKKVHGIFEHISDAARILREIKLLRLLRHPDIVEIKHIMLPPSIKDFKDIYVVFELLESDLHQVIKANTDLTKEHYQFFLYQLLRALKYIHTANVYHRDLKPKNILANANCKLKICDFGLARVAFSDTPTTVFWTYTPAIDIWSIGCIFAEVLIGRPLFPGKSVVHQLDLITDLLGTPSMDSISRVRNDKARRYLTSMRKKQPVPFAQKFPNADPLSLRLLERLLAFDPKDRPTAEEALAHPYFKGLAKIEREPSCQPITQMEFEFEKKRITKGEIRDLIFNEILEYHPQLNRTERTNFLYPSAVDQFGKQFAHLEETGDKSDPVVPLDRKHASLPRSTIVHSNMTPQKEQSYIASSKNRQTTEEYNTNYAESSGLRGLQVIPQETPGKVVRPVVKYEHGSIVSDSYDSRTSMRGYLLPSQSIPLHINVK*