Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0743090 | RHN57948.1 | 59.777 | 358 | 75 | 6 | 1 | 300 | 1 | 347 | 1.47e-113 | 348 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0743090 | A0A396HZM9 | 59.777 | 358 | 75 | 6 | 1 | 300 | 1 | 347 | 7.03e-114 | 348 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0743090 | Msa0863240 | 0.881601 | 2.096589e-70 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0743090 | MtrunA17_Chr5g0445861 | 59.777 | 358 | 75 | 6 | 1 | 300 | 1 | 347 | 1.35e-117 | 348 |
| Msa0743090 | MtrunA17_Chr5g0445961 | 39.076 | 563 | 161 | 15 | 1 | 385 | 1 | 559 | 4.58e-78 | 251 |
| Msa0743090 | MtrunA17_Chr5g0445771 | 41.642 | 341 | 138 | 7 | 3 | 319 | 1 | 304 | 9.60e-57 | 193 |
| Msa0743090 | MtrunA17_Chr5g0445881 | 42.675 | 314 | 125 | 12 | 1 | 300 | 1 | 273 | 1.30e-44 | 160 |
| Msa0743090 | MtrunA17_Chr5g0445831 | 35.411 | 401 | 107 | 9 | 1 | 300 | 1 | 350 | 1.51e-41 | 151 |
| Msa0743090 | MtrunA17_Chr5g0446171 | 39.076 | 238 | 80 | 5 | 1 | 212 | 1 | 199 | 1.14e-36 | 133 |
| Msa0743090 | MtrunA17_Chr5g0445811 | 34.160 | 363 | 121 | 12 | 1 | 330 | 1 | 278 | 8.99e-31 | 119 |
| Msa0743090 | MtrunA17_Chr5g0446231 | 46.795 | 156 | 53 | 3 | 35 | 187 | 1 | 129 | 2.88e-29 | 119 |
| Msa0743090 | MtrunA17_Chr5g0446181 | 38.486 | 317 | 95 | 12 | 1 | 300 | 1 | 234 | 1.97e-28 | 114 |
| Msa0743090 | MtrunA17_Chr5g0446191 | 46.154 | 156 | 54 | 3 | 35 | 187 | 16 | 144 | 6.62e-27 | 112 |
| Msa0743090 | MtrunA17_Chr5g0413371 | 37.288 | 177 | 76 | 3 | 31 | 207 | 2 | 143 | 3.54e-21 | 95.5 |
| Msa0743090 | MtrunA17_Chr5g0434161 | 60.811 | 74 | 28 | 1 | 176 | 249 | 19 | 91 | 1.00e-16 | 75.1 |
| Msa0743090 | MtrunA17_Chr1g0185261 | 31.274 | 259 | 87 | 7 | 86 | 333 | 26 | 204 | 3.80e-14 | 71.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 47 sgRNAs with CRISPR-Local
Find 124 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGATGACCCATGTTCGATTT+TGG | 0.133002 | 5_1:-63212059 | None:intergenic |
| CTCAAAACCATTACATGTTA+AGG | 0.367230 | 5_1:+63213105 | Msa0743090:CDS |
| TGAGTTAGATAATGAAGTTT+TGG | 0.377487 | 5_1:+63212615 | Msa0743090:CDS |
| GTCATTTCTTCTAAGTTATG+AGG | 0.381921 | 5_1:-63212130 | None:intergenic |
| CTTACAACACAACGTTGAAA+TGG | 0.390778 | 5_1:+63212264 | Msa0743090:CDS |
| TTGACATCCTTAACATGTAA+TGG | 0.392334 | 5_1:-63213112 | None:intergenic |
| GGGCTGCTTGCATCTTTGCC+TGG | 0.393057 | 5_1:-63213196 | None:intergenic |
| GAGAGGAACTTTGTCAGAAA+GGG | 0.410933 | 5_1:+63212329 | Msa0743090:CDS |
| TGAGCTAGAAGCTAAAGTTT+TGG | 0.417553 | 5_1:+63212702 | Msa0743090:CDS |
| CCAATCTTCGGGTCACTCTC+TGG | 0.419534 | 5_1:-63213266 | None:intergenic |
| TTAGCTGATAGAGACACTAT+TGG | 0.444090 | 5_1:+63212487 | Msa0743090:CDS |
| AAGAAAGAAGAACATTGAGT+TGG | 0.447176 | 5_1:+63212516 | Msa0743090:CDS |
| GGAGGATGTTGAAGCAAGTC+AGG | 0.455376 | 5_1:+63212939 | Msa0743090:CDS |
| CGAGCTTCGAAGTAAATTGA+AGG | 0.461338 | 5_1:+63212774 | Msa0743090:CDS |
| GACACATGAGGTGTTGCAAC+CGG | 0.466770 | 5_1:-63212982 | None:intergenic |
| AGAGAGGAACTTTGTCAGAA+AGG | 0.484616 | 5_1:+63212328 | Msa0743090:CDS |
| GAACGAAAACATAAAATTAG+TGG | 0.485865 | 5_1:+63212837 | Msa0743090:CDS |
| ATGTCAAGAAAGCCAAAGTC+AGG | 0.490710 | 5_1:+63213128 | Msa0743090:CDS |
| GAAGATGGTGATGAGGTTGA+TGG | 0.497731 | 5_1:+63213229 | Msa0743090:CDS |
| TCTAACACTAGACCTGACTT+TGG | 0.506997 | 5_1:-63213140 | None:intergenic |
| AGCAAGAATCACGTAGTTGG+TGG | 0.527719 | 5_1:-63212083 | None:intergenic |
| AACAAGATGATTGATGGTCC+AGG | 0.535173 | 5_1:+63213178 | Msa0743090:CDS |
| GAGGTTGATGGTATTGATGA+TGG | 0.540674 | 5_1:+63213241 | Msa0743090:CDS |
| CTTATTCGAGTCTTTGAACA+CGG | 0.544179 | 5_1:+63212882 | Msa0743090:CDS |
| TTCAGCAAGAATCACGTAGT+TGG | 0.558811 | 5_1:-63212086 | None:intergenic |
| GCATGAAAGAAATGCAAGGT+TGG | 0.577609 | 5_1:+63212918 | Msa0743090:CDS |
| TGAAGTTGTAACAGATATGA+TGG | 0.587982 | 5_1:+63212105 | Msa0743090:CDS |
| TCACCATCTTCAATCACAAG+TGG | 0.589505 | 5_1:-63213217 | None:intergenic |
| ATTAGTGGATGAGAAGCGTA+AGG | 0.593200 | 5_1:+63212852 | Msa0743090:CDS |
| GAACATTGAGTTGGAGTGTG+AGG | 0.595179 | 5_1:+63212525 | Msa0743090:CDS |
| AGCCCACTTGTGATTGAAGA+TGG | 0.597478 | 5_1:+63213214 | Msa0743090:CDS |
| GAAAGAGTTTCAGAAAAGAG+AGG | 0.598100 | 5_1:+63212312 | Msa0743090:CDS |
| ATTGAACCCAAAATCGAACA+TGG | 0.604289 | 5_1:+63212052 | Msa0743090:CDS |
| TGAGTTGAGGAAACTGTTTG+AGG | 0.619955 | 5_1:+63212447 | Msa0743090:CDS |
| TGATCATGTTGCAAATGCAC+CGG | 0.620646 | 5_1:+63212963 | Msa0743090:CDS |
| GCAACACCTCATGTGTCTGA+TGG | 0.630963 | 5_1:+63212988 | Msa0743090:CDS |
| GAGAGAGGAACATTGAGTTG+AGG | 0.631931 | 5_1:+63212434 | Msa0743090:CDS |
| TGAAAGAAATGCAAGGTTGG+AGG | 0.632876 | 5_1:+63212921 | Msa0743090:CDS |
| TCTTTGAACACGGAGTTCAG+AGG | 0.634013 | 5_1:+63212892 | Msa0743090:CDS |
| TTGAAATGGAGAAACTTGCA+AGG | 0.634595 | 5_1:+63212278 | Msa0743090:CDS |
| CACCATCTTCAATCACAAGT+GGG | 0.636322 | 5_1:-63213216 | None:intergenic |
| TTGCTACTATAAATGAGCTG+AGG | 0.640940 | 5_1:+63212815 | Msa0743090:CDS |
| CTGTTGTAGTACTAAGAGAG+AGG | 0.656292 | 5_1:+63212419 | Msa0743090:CDS |
| TGTGATTGAAGATGGTGATG+AGG | 0.677350 | 5_1:+63213222 | Msa0743090:CDS |
| GATTGCATGAAAGAAATGCA+AGG | 0.680697 | 5_1:+63212914 | Msa0743090:CDS |
| TTGAACCCAAAATCGAACAT+GGG | 0.683973 | 5_1:+63212053 | Msa0743090:CDS |
| TTTGTACCATCAGACACATG+AGG | 0.707522 | 5_1:-63212994 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTGTTTAAGTTATATTTTAC+AGG | + | chr5_1:63213068-63213087 | Msa0743090:intron | 15.0% |
| !!! | TTGTTTAAGTTATATTTTAC+AGG | + | chr5_1:63213068-63213087 | Msa0743090:intron | 15.0% |
| ! | TGAAGAAGTTGAAAGAAAAA+TGG | + | chr5_1:63212548-63212567 | Msa0743090:CDS | 25.0% |
| ! | GAAGAAGTTGAAAGAAAAAT+GGG | + | chr5_1:63212549-63212568 | Msa0743090:CDS | 25.0% |
| ! | GATGTACTAAGAAAAAAGAA+TGG | + | chr5_1:63212592-63212611 | Msa0743090:CDS | 25.0% |
| !! | TGAGTTAGATAATGAAGTTT+TGG | + | chr5_1:63212615-63212634 | Msa0743090:CDS | 25.0% |
| ! | GAACGAAAACATAAAATTAG+TGG | + | chr5_1:63212837-63212856 | Msa0743090:CDS | 25.0% |
| ! | TTGAAAAACAAGATGATTGA+TGG | + | chr5_1:63213172-63213191 | Msa0743090:CDS | 25.0% |
| ! | TGAAGAAGTTGAAAGAAAAA+TGG | + | chr5_1:63212548-63212567 | Msa0743090:CDS | 25.0% |
| ! | GAAGAAGTTGAAAGAAAAAT+GGG | + | chr5_1:63212549-63212568 | Msa0743090:CDS | 25.0% |
| ! | GATGTACTAAGAAAAAAGAA+TGG | + | chr5_1:63212592-63212611 | Msa0743090:CDS | 25.0% |
| !! | TGAGTTAGATAATGAAGTTT+TGG | + | chr5_1:63212615-63212634 | Msa0743090:CDS | 25.0% |
| ! | GAACGAAAACATAAAATTAG+TGG | + | chr5_1:63212837-63212856 | Msa0743090:CDS | 25.0% |
| ! | TTGAAAAACAAGATGATTGA+TGG | + | chr5_1:63213172-63213191 | Msa0743090:CDS | 25.0% |
| TGAAGTTGTAACAGATATGA+TGG | + | chr5_1:63212105-63212124 | Msa0743090:CDS | 30.0% | |
| GTCATTTCTTCTAAGTTATG+AGG | - | chr5_1:63212133-63212152 | None:intergenic | 30.0% | |
| AAGAAAGAAGAACATTGAGT+TGG | + | chr5_1:63212516-63212535 | Msa0743090:CDS | 30.0% | |
| !!! | TTTTGGAGTTGAAGCAAAAA+AGG | + | chr5_1:63212632-63212651 | Msa0743090:CDS | 30.0% |
| ! | TTTGGAGTTGAAGCAAAAAA+GGG | + | chr5_1:63212633-63212652 | Msa0743090:CDS | 30.0% |
| ! | TGGAGATTTTGAATGAGAAA+TGG | + | chr5_1:63212728-63212747 | Msa0743090:CDS | 30.0% |
| CTCAAAACCATTACATGTTA+AGG | + | chr5_1:63213105-63213124 | Msa0743090:CDS | 30.0% | |
| TTGACATCCTTAACATGTAA+TGG | - | chr5_1:63213115-63213134 | None:intergenic | 30.0% | |
| TGAAGTTGTAACAGATATGA+TGG | + | chr5_1:63212105-63212124 | Msa0743090:CDS | 30.0% | |
| GTCATTTCTTCTAAGTTATG+AGG | - | chr5_1:63212133-63212152 | None:intergenic | 30.0% | |
| AAGAAAGAAGAACATTGAGT+TGG | + | chr5_1:63212516-63212535 | Msa0743090:CDS | 30.0% | |
| !!! | TTTTGGAGTTGAAGCAAAAA+AGG | + | chr5_1:63212632-63212651 | Msa0743090:CDS | 30.0% |
| ! | TTTGGAGTTGAAGCAAAAAA+GGG | + | chr5_1:63212633-63212652 | Msa0743090:CDS | 30.0% |
| ! | TGGAGATTTTGAATGAGAAA+TGG | + | chr5_1:63212728-63212747 | Msa0743090:CDS | 30.0% |
| CTCAAAACCATTACATGTTA+AGG | + | chr5_1:63213105-63213124 | Msa0743090:CDS | 30.0% | |
| TTGACATCCTTAACATGTAA+TGG | - | chr5_1:63213115-63213134 | None:intergenic | 30.0% | |
| ATTGAACCCAAAATCGAACA+TGG | + | chr5_1:63212052-63212071 | Msa0743090:CDS | 35.0% | |
| TTGAACCCAAAATCGAACAT+GGG | + | chr5_1:63212053-63212072 | Msa0743090:CDS | 35.0% | |
| CTTACAACACAACGTTGAAA+TGG | + | chr5_1:63212264-63212283 | Msa0743090:CDS | 35.0% | |
| TTGAAATGGAGAAACTTGCA+AGG | + | chr5_1:63212278-63212297 | Msa0743090:CDS | 35.0% | |
| GAAAGAGTTTCAGAAAAGAG+AGG | + | chr5_1:63212312-63212331 | Msa0743090:CDS | 35.0% | |
| TTAGCTGATAGAGACACTAT+TGG | + | chr5_1:63212487-63212506 | Msa0743090:CDS | 35.0% | |
| GAAGTTGAAAGAAAAATGGG+TGG | + | chr5_1:63212552-63212571 | Msa0743090:CDS | 35.0% | |
| ! | TGAGCTAGAAGCTAAAGTTT+TGG | + | chr5_1:63212702-63212721 | Msa0743090:CDS | 35.0% |
| !!! | AGAAGCTAAAGTTTTGGAGT+TGG | + | chr5_1:63212708-63212727 | Msa0743090:CDS | 35.0% |
| TTGCTACTATAAATGAGCTG+AGG | + | chr5_1:63212815-63212834 | Msa0743090:CDS | 35.0% | |
| CTTATTCGAGTCTTTGAACA+CGG | + | chr5_1:63212882-63212901 | Msa0743090:CDS | 35.0% | |
| GATTGCATGAAAGAAATGCA+AGG | + | chr5_1:63212914-63212933 | Msa0743090:CDS | 35.0% | |
| ATTGAACCCAAAATCGAACA+TGG | + | chr5_1:63212052-63212071 | Msa0743090:CDS | 35.0% | |
| TTGAACCCAAAATCGAACAT+GGG | + | chr5_1:63212053-63212072 | Msa0743090:CDS | 35.0% | |
| CTTACAACACAACGTTGAAA+TGG | + | chr5_1:63212264-63212283 | Msa0743090:CDS | 35.0% | |
| TTGAAATGGAGAAACTTGCA+AGG | + | chr5_1:63212278-63212297 | Msa0743090:CDS | 35.0% | |
| GAAAGAGTTTCAGAAAAGAG+AGG | + | chr5_1:63212312-63212331 | Msa0743090:CDS | 35.0% | |
| TTAGCTGATAGAGACACTAT+TGG | + | chr5_1:63212487-63212506 | Msa0743090:CDS | 35.0% | |
| GAAGTTGAAAGAAAAATGGG+TGG | + | chr5_1:63212552-63212571 | Msa0743090:CDS | 35.0% | |
| ! | TGAGCTAGAAGCTAAAGTTT+TGG | + | chr5_1:63212702-63212721 | Msa0743090:CDS | 35.0% |
| !!! | AGAAGCTAAAGTTTTGGAGT+TGG | + | chr5_1:63212708-63212727 | Msa0743090:CDS | 35.0% |
| TTGCTACTATAAATGAGCTG+AGG | + | chr5_1:63212815-63212834 | Msa0743090:CDS | 35.0% | |
| CTTATTCGAGTCTTTGAACA+CGG | + | chr5_1:63212882-63212901 | Msa0743090:CDS | 35.0% | |
| GATTGCATGAAAGAAATGCA+AGG | + | chr5_1:63212914-63212933 | Msa0743090:CDS | 35.0% | |
| ! | GATGACCCATGTTCGATTTT+GGG | - | chr5_1:63212061-63212080 | None:intergenic | 40.0% |
| ! | AGATGACCCATGTTCGATTT+TGG | - | chr5_1:63212062-63212081 | None:intergenic | 40.0% |
| TTCAGCAAGAATCACGTAGT+TGG | - | chr5_1:63212089-63212108 | None:intergenic | 40.0% | |
| AGAGAGGAACTTTGTCAGAA+AGG | + | chr5_1:63212328-63212347 | Msa0743090:CDS | 40.0% | |
| GAGAGGAACTTTGTCAGAAA+GGG | + | chr5_1:63212329-63212348 | Msa0743090:CDS | 40.0% | |
| CTGTTGTAGTACTAAGAGAG+AGG | + | chr5_1:63212419-63212438 | Msa0743090:CDS | 40.0% | |
| ! | TGAGTTGAGGAAACTGTTTG+AGG | + | chr5_1:63212447-63212466 | Msa0743090:CDS | 40.0% |
| AAGAAAAATGGGTGGATGAC+AGG | + | chr5_1:63212560-63212579 | Msa0743090:CDS | 40.0% | |
| CGAGCTTCGAAGTAAATTGA+AGG | + | chr5_1:63212774-63212793 | Msa0743090:CDS | 40.0% | |
| ! | ATTAGTGGATGAGAAGCGTA+AGG | + | chr5_1:63212852-63212871 | Msa0743090:CDS | 40.0% |
| GCATGAAAGAAATGCAAGGT+TGG | + | chr5_1:63212918-63212937 | Msa0743090:CDS | 40.0% | |
| TGAAAGAAATGCAAGGTTGG+AGG | + | chr5_1:63212921-63212940 | Msa0743090:CDS | 40.0% | |
| TGATCATGTTGCAAATGCAC+CGG | + | chr5_1:63212963-63212982 | Msa0743090:CDS | 40.0% | |
| TTTGTACCATCAGACACATG+AGG | - | chr5_1:63212997-63213016 | None:intergenic | 40.0% | |
| ATGTCAAGAAAGCCAAAGTC+AGG | + | chr5_1:63213128-63213147 | Msa0743090:CDS | 40.0% | |
| TCTAACACTAGACCTGACTT+TGG | - | chr5_1:63213143-63213162 | None:intergenic | 40.0% | |
| ! | AACAAGATGATTGATGGTCC+AGG | + | chr5_1:63213178-63213197 | Msa0743090:CDS | 40.0% |
| CACCATCTTCAATCACAAGT+GGG | - | chr5_1:63213219-63213238 | None:intergenic | 40.0% | |
| TCACCATCTTCAATCACAAG+TGG | - | chr5_1:63213220-63213239 | None:intergenic | 40.0% | |
| ! | TGTGATTGAAGATGGTGATG+AGG | + | chr5_1:63213222-63213241 | Msa0743090:CDS | 40.0% |
| !! | GAGGTTGATGGTATTGATGA+TGG | + | chr5_1:63213241-63213260 | Msa0743090:CDS | 40.0% |
| ! | GATGACCCATGTTCGATTTT+GGG | - | chr5_1:63212061-63212080 | None:intergenic | 40.0% |
| ! | AGATGACCCATGTTCGATTT+TGG | - | chr5_1:63212062-63212081 | None:intergenic | 40.0% |
| TTCAGCAAGAATCACGTAGT+TGG | - | chr5_1:63212089-63212108 | None:intergenic | 40.0% | |
| AGAGAGGAACTTTGTCAGAA+AGG | + | chr5_1:63212328-63212347 | Msa0743090:CDS | 40.0% | |
| GAGAGGAACTTTGTCAGAAA+GGG | + | chr5_1:63212329-63212348 | Msa0743090:CDS | 40.0% | |
| CTGTTGTAGTACTAAGAGAG+AGG | + | chr5_1:63212419-63212438 | Msa0743090:CDS | 40.0% | |
| ! | TGAGTTGAGGAAACTGTTTG+AGG | + | chr5_1:63212447-63212466 | Msa0743090:CDS | 40.0% |
| AAGAAAAATGGGTGGATGAC+AGG | + | chr5_1:63212560-63212579 | Msa0743090:CDS | 40.0% | |
| CGAGCTTCGAAGTAAATTGA+AGG | + | chr5_1:63212774-63212793 | Msa0743090:CDS | 40.0% | |
| ! | ATTAGTGGATGAGAAGCGTA+AGG | + | chr5_1:63212852-63212871 | Msa0743090:CDS | 40.0% |
| GCATGAAAGAAATGCAAGGT+TGG | + | chr5_1:63212918-63212937 | Msa0743090:CDS | 40.0% | |
| TGAAAGAAATGCAAGGTTGG+AGG | + | chr5_1:63212921-63212940 | Msa0743090:CDS | 40.0% | |
| TGATCATGTTGCAAATGCAC+CGG | + | chr5_1:63212963-63212982 | Msa0743090:CDS | 40.0% | |
| TTTGTACCATCAGACACATG+AGG | - | chr5_1:63212997-63213016 | None:intergenic | 40.0% | |
| ATGTCAAGAAAGCCAAAGTC+AGG | + | chr5_1:63213128-63213147 | Msa0743090:CDS | 40.0% | |
| TCTAACACTAGACCTGACTT+TGG | - | chr5_1:63213143-63213162 | None:intergenic | 40.0% | |
| ! | AACAAGATGATTGATGGTCC+AGG | + | chr5_1:63213178-63213197 | Msa0743090:CDS | 40.0% |
| CACCATCTTCAATCACAAGT+GGG | - | chr5_1:63213219-63213238 | None:intergenic | 40.0% | |
| TCACCATCTTCAATCACAAG+TGG | - | chr5_1:63213220-63213239 | None:intergenic | 40.0% | |
| ! | TGTGATTGAAGATGGTGATG+AGG | + | chr5_1:63213222-63213241 | Msa0743090:CDS | 40.0% |
| !! | GAGGTTGATGGTATTGATGA+TGG | + | chr5_1:63213241-63213260 | Msa0743090:CDS | 40.0% |
| AGCAAGAATCACGTAGTTGG+TGG | - | chr5_1:63212086-63212105 | None:intergenic | 45.0% | |
| ! | GAGAGAGGAACATTGAGTTG+AGG | + | chr5_1:63212434-63212453 | Msa0743090:CDS | 45.0% |
| !! | GAACATTGAGTTGGAGTGTG+AGG | + | chr5_1:63212525-63212544 | Msa0743090:CDS | 45.0% |
| GGAGTTGAAGCAAAAAAGGG+TGG | + | chr5_1:63212636-63212655 | Msa0743090:CDS | 45.0% | |
| GTTGAAGCAAAAAAGGGTGG+AGG | + | chr5_1:63212639-63212658 | Msa0743090:CDS | 45.0% | |
| AAGCAAAAAAGGGTGGAGGA+TGG | + | chr5_1:63212643-63212662 | Msa0743090:CDS | 45.0% | |
| AGCAAAAAAGGGTGGAGGAT+GGG | + | chr5_1:63212644-63212663 | Msa0743090:CDS | 45.0% | |
| TCTTTGAACACGGAGTTCAG+AGG | + | chr5_1:63212892-63212911 | Msa0743090:CDS | 45.0% | |
| AGCCCACTTGTGATTGAAGA+TGG | + | chr5_1:63213214-63213233 | Msa0743090:CDS | 45.0% | |
| ! | GAAGATGGTGATGAGGTTGA+TGG | + | chr5_1:63213229-63213248 | Msa0743090:CDS | 45.0% |
| AGCAAGAATCACGTAGTTGG+TGG | - | chr5_1:63212086-63212105 | None:intergenic | 45.0% | |
| ! | GAGAGAGGAACATTGAGTTG+AGG | + | chr5_1:63212434-63212453 | Msa0743090:CDS | 45.0% |
| !! | GAACATTGAGTTGGAGTGTG+AGG | + | chr5_1:63212525-63212544 | Msa0743090:CDS | 45.0% |
| GGAGTTGAAGCAAAAAAGGG+TGG | + | chr5_1:63212636-63212655 | Msa0743090:CDS | 45.0% | |
| GTTGAAGCAAAAAAGGGTGG+AGG | + | chr5_1:63212639-63212658 | Msa0743090:CDS | 45.0% | |
| AAGCAAAAAAGGGTGGAGGA+TGG | + | chr5_1:63212643-63212662 | Msa0743090:CDS | 45.0% | |
| AGCAAAAAAGGGTGGAGGAT+GGG | + | chr5_1:63212644-63212663 | Msa0743090:CDS | 45.0% | |
| TCTTTGAACACGGAGTTCAG+AGG | + | chr5_1:63212892-63212911 | Msa0743090:CDS | 45.0% | |
| AGCCCACTTGTGATTGAAGA+TGG | + | chr5_1:63213214-63213233 | Msa0743090:CDS | 45.0% | |
| ! | GAAGATGGTGATGAGGTTGA+TGG | + | chr5_1:63213229-63213248 | Msa0743090:CDS | 45.0% |
| GGAGGATGTTGAAGCAAGTC+AGG | + | chr5_1:63212939-63212958 | Msa0743090:CDS | 50.0% | |
| !! | GACACATGAGGTGTTGCAAC+CGG | - | chr5_1:63212985-63213004 | None:intergenic | 50.0% |
| GCAACACCTCATGTGTCTGA+TGG | + | chr5_1:63212988-63213007 | Msa0743090:CDS | 50.0% | |
| GGAGGATGTTGAAGCAAGTC+AGG | + | chr5_1:63212939-63212958 | Msa0743090:CDS | 50.0% | |
| !! | GACACATGAGGTGTTGCAAC+CGG | - | chr5_1:63212985-63213004 | None:intergenic | 50.0% |
| GCAACACCTCATGTGTCTGA+TGG | + | chr5_1:63212988-63213007 | Msa0743090:CDS | 50.0% | |
| GGGCTGCTTGCATCTTTGCC+TGG | - | chr5_1:63213199-63213218 | None:intergenic | 60.0% | |
| GGGCTGCTTGCATCTTTGCC+TGG | - | chr5_1:63213199-63213218 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 63212046 | 63213276 | 63212046 | ID=Msa0743090;Name=Msa0743090 |
| chr5_1 | mRNA | 63212046 | 63213276 | 63212046 | ID=Msa0743090-mRNA-1;Parent=Msa0743090;Name=Msa0743090-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|0|0|1|1|1|2|0|388 |
| chr5_1 | exon | 63212046 | 63213025 | 63212046 | ID=Msa0743090-mRNA-1:exon:18603;Parent=Msa0743090-mRNA-1 |
| chr5_1 | exon | 63213090 | 63213276 | 63213090 | ID=Msa0743090-mRNA-1:exon:18604;Parent=Msa0743090-mRNA-1 |
| chr5_1 | CDS | 63212046 | 63213025 | 63212046 | ID=Msa0743090-mRNA-1:cds;Parent=Msa0743090-mRNA-1 |
| chr5_1 | CDS | 63213090 | 63213276 | 63213090 | ID=Msa0743090-mRNA-1:cds;Parent=Msa0743090-mRNA-1 |
| Gene Sequence |
| Protein sequence |
