Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0863240 | RHN57948.1 | 57.103 | 359 | 73 | 8 | 1 | 290 | 1 | 347 | 1.43e-102 | 320 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0863240 | A0A396HZM9 | 57.103 | 359 | 73 | 8 | 1 | 290 | 1 | 347 | 6.83e-103 | 320 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0004360 | Msa0863240 | 0.803233 | 3.844761e-49 | -8.615850e-47 |
| Msa0005050 | Msa0863240 | 0.822281 | 2.575784e-53 | -8.615850e-47 |
| Msa0016670 | Msa0863240 | 0.821819 | 3.296448e-53 | -8.615850e-47 |
| Msa0032840 | Msa0863240 | -0.827018 | 1.971839e-54 | -8.615850e-47 |
| Msa0036430 | Msa0863240 | 0.808521 | 2.973059e-50 | -8.615850e-47 |
| Msa0044020 | Msa0863240 | 0.800879 | 1.171802e-48 | -8.615850e-47 |
| Msa0046750 | Msa0863240 | 0.801727 | 7.853767e-49 | -8.615850e-47 |
| Msa0053110 | Msa0863240 | 0.833012 | 6.808781e-56 | -8.615850e-47 |
| Msa0072810 | Msa0863240 | 0.831528 | 1.586408e-55 | -8.615850e-47 |
| Msa0073670 | Msa0863240 | 0.813724 | 2.214574e-51 | -8.615850e-47 |
| Msa0090590 | Msa0863240 | 0.804510 | 2.086754e-49 | -8.615850e-47 |
| Msa0096670 | Msa0863240 | 0.806493 | 8.009058e-50 | -8.615850e-47 |
| Msa0098440 | Msa0863240 | 0.828951 | 6.755828e-55 | -8.615850e-47 |
| Msa0103000 | Msa0863240 | 0.832364 | 9.861404e-56 | -8.615850e-47 |
| Msa0105420 | Msa0863240 | 0.803209 | 3.887987e-49 | -8.615850e-47 |
| Msa0110970 | Msa0863240 | 0.828915 | 6.895235e-55 | -8.615850e-47 |
| Msa0114540 | Msa0863240 | -0.811323 | 7.416577e-51 | -8.615850e-47 |
| Msa0120330 | Msa0863240 | 0.808891 | 2.477945e-50 | -8.615850e-47 |
| Msa0609450 | Msa0863240 | 0.803246 | 3.820185e-49 | -8.615850e-47 |
| Msa0642650 | Msa0863240 | 0.800576 | 1.350602e-48 | -8.615850e-47 |
| Msa0647380 | Msa0863240 | 0.811819 | 5.786461e-51 | -8.615850e-47 |
| Msa0680240 | Msa0863240 | 0.805258 | 1.456249e-49 | -8.615850e-47 |
| Msa0684500 | Msa0863240 | 0.803789 | 2.948086e-49 | -8.615850e-47 |
| Msa0692080 | Msa0863240 | 0.808020 | 3.801578e-50 | -8.615850e-47 |
| Msa0703230 | Msa0863240 | 0.817428 | 3.314974e-52 | -8.615850e-47 |
| Msa0743090 | Msa0863240 | 0.881601 | 2.096589e-70 | -8.615850e-47 |
| Msa0747780 | Msa0863240 | 0.834245 | 3.350442e-56 | -8.615850e-47 |
| Msa0799210 | Msa0863240 | 0.807668 | 4.517405e-50 | -8.615850e-47 |
| Msa0822990 | Msa0863240 | 0.801478 | 8.836216e-49 | -8.615850e-47 |
| Msa0130570 | Msa0863240 | 0.807028 | 6.174522e-50 | -8.615850e-47 |
| Msa0134130 | Msa0863240 | 0.800549 | 1.368306e-48 | -8.615850e-47 |
| Msa0143430 | Msa0863240 | 0.800513 | 1.391128e-48 | -8.615850e-47 |
| Msa0147560 | Msa0863240 | 0.806758 | 7.040392e-50 | -8.615850e-47 |
| Msa0172350 | Msa0863240 | 0.806339 | 8.630331e-50 | -8.615850e-47 |
| Msa0172960 | Msa0863240 | -0.817034 | 4.066124e-52 | -8.615850e-47 |
| Msa0183830 | Msa0863240 | 0.807577 | 4.723408e-50 | -8.615850e-47 |
| Msa0186890 | Msa0863240 | 0.816597 | 5.093440e-52 | -8.615850e-47 |
| Msa0199710 | Msa0863240 | 0.802362 | 5.817160e-49 | -8.615850e-47 |
| Msa0203160 | Msa0863240 | 0.817554 | 3.105308e-52 | -8.615850e-47 |
| Msa0219190 | Msa0863240 | 0.822204 | 2.684991e-53 | -8.615850e-47 |
| Msa0230550 | Msa0863240 | -0.821733 | 3.451678e-53 | -8.615850e-47 |
| Msa0402330 | Msa0863240 | 0.807859 | 4.113201e-50 | -8.615850e-47 |
| Msa0413930 | Msa0863240 | 0.804918 | 1.714841e-49 | -8.615850e-47 |
| Msa0436460 | Msa0863240 | 0.847266 | 1.288984e-59 | -8.615850e-47 |
| Msa0436500 | Msa0863240 | 0.810531 | 1.100606e-50 | -8.615850e-47 |
| Msa0264350 | Msa0863240 | 0.807760 | 4.319131e-50 | -8.615850e-47 |
| Msa0267760 | Msa0863240 | 0.810202 | 1.296346e-50 | -8.615850e-47 |
| Msa0280900 | Msa0863240 | 0.813363 | 2.659218e-51 | -8.615850e-47 |
| Msa0355270 | Msa0863240 | 0.809060 | 2.280461e-50 | -8.615850e-47 |
| Msa0484690 | Msa0863240 | 0.814029 | 1.896823e-51 | -8.615850e-47 |
| Msa0521880 | Msa0863240 | 0.802805 | 4.712123e-49 | -8.615850e-47 |
| Msa0526710 | Msa0863240 | 0.804042 | 2.611542e-49 | -8.615850e-47 |
| Msa0541860 | Msa0863240 | 0.812394 | 4.333891e-51 | -8.615850e-47 |
| Msa0555910 | Msa0863240 | 0.807175 | 5.747974e-50 | -8.615850e-47 |
| Msa0862100 | Msa0863240 | 0.816371 | 5.724469e-52 | -8.615850e-47 |
| Msa0863240 | Msa0872310 | 0.826900 | 2.104009e-54 | -8.615850e-47 |
| Msa0863240 | Msa0905550 | 0.828812 | 7.299022e-55 | -8.615850e-47 |
| Msa0863240 | Msa0930780 | 0.800858 | 1.183263e-48 | -8.615850e-47 |
| Msa0863240 | Msa0937550 | 0.822221 | 2.659675e-53 | -8.615850e-47 |
| Msa0863240 | Msa0996080 | 0.801883 | 7.295889e-49 | -8.615850e-47 |
| Msa0863240 | Msa1007350 | 0.821744 | 3.430570e-53 | -8.615850e-47 |
| Msa0863240 | Msa1012700 | 0.808980 | 2.372421e-50 | -8.615850e-47 |
| Msa0863240 | Msa1012810 | 0.802287 | 6.026861e-49 | -8.615850e-47 |
| Msa0863240 | Msa1014270 | 0.813359 | 2.663582e-51 | -8.615850e-47 |
| Msa0863240 | Msa1018790 | 0.820760 | 5.784864e-53 | -8.615850e-47 |
| Msa0863240 | Msa1041530 | 0.822747 | 2.007329e-53 | -8.615850e-47 |
| Msa0863240 | Msa1055260 | 0.800582 | 1.347312e-48 | -8.615850e-47 |
| Msa0863240 | Msa1081570 | 0.806896 | 6.584167e-50 | -8.615850e-47 |
| Msa0863240 | Msa1082700 | 0.815442 | 9.225310e-52 | -8.615850e-47 |
| Msa0863240 | Msa1094420 | 0.805330 | 1.406359e-49 | -8.615850e-47 |
| Msa0863240 | Msa1100700 | 0.812895 | 3.368226e-51 | -8.615850e-47 |
| Msa0863240 | Msa1107440 | 0.808696 | 2.728270e-50 | -8.615850e-47 |
| Msa0863240 | Msa1123880 | 0.811262 | 7.645875e-51 | -8.615850e-47 |
| Msa0863240 | Msa1127140 | 0.817149 | 3.829464e-52 | -8.615850e-47 |
| Msa0863240 | Msa1134110 | 0.806146 | 9.476182e-50 | -8.615850e-47 |
| Msa0863240 | Msa1139810 | 0.828991 | 6.605772e-55 | -8.615850e-47 |
| Msa0863240 | Msa1166400 | 0.815395 | 9.448950e-52 | -8.615850e-47 |
| Msa0863240 | Msa1236100 | 0.802529 | 5.373825e-49 | -8.615850e-47 |
| Msa0863240 | Msa1237030 | 0.803372 | 3.596650e-49 | -8.615850e-47 |
| Msa0863240 | Msa1249870 | 0.821059 | 4.938302e-53 | -8.615850e-47 |
| Msa0863240 | Msa1307950 | 0.800453 | 1.430952e-48 | -8.615850e-47 |
| Msa0863240 | Msa1358550 | 0.811396 | 7.149389e-51 | -8.615850e-47 |
| Msa0863240 | Msa1365200 | 0.809078 | 2.260237e-50 | -8.615850e-47 |
| Msa0863240 | Msa1374440 | 0.810914 | 9.093869e-51 | -8.615850e-47 |
| Msa0863240 | Msa1379990 | 0.852246 | 5.235576e-61 | -8.615850e-47 |
| Msa0863240 | Msa1390310 | 0.809228 | 2.098902e-50 | -8.615850e-47 |
| Msa0863240 | Msa1420060 | 0.840242 | 9.786512e-58 | -8.615850e-47 |
| Msa0863240 | Msa1422270 | 0.812300 | 4.543143e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0863240 | MtrunA17_Chr5g0445861 | 57.103 | 359 | 73 | 8 | 1 | 290 | 1 | 347 | 1.32e-106 | 320 |
| Msa0863240 | MtrunA17_Chr5g0445961 | 36.945 | 563 | 160 | 17 | 1 | 372 | 1 | 559 | 1.05e-64 | 215 |
| Msa0863240 | MtrunA17_Chr5g0445771 | 40.058 | 342 | 132 | 9 | 3 | 309 | 1 | 304 | 1.76e-49 | 174 |
| Msa0863240 | MtrunA17_Chr5g0445831 | 34.596 | 396 | 107 | 9 | 1 | 290 | 1 | 350 | 4.58e-39 | 144 |
| Msa0863240 | MtrunA17_Chr5g0445881 | 40.705 | 312 | 124 | 13 | 1 | 290 | 1 | 273 | 1.18e-36 | 138 |
| Msa0863240 | MtrunA17_Chr5g0446171 | 37.395 | 238 | 85 | 5 | 1 | 213 | 1 | 199 | 2.08e-31 | 119 |
| Msa0863240 | MtrunA17_Chr5g0445811 | 34.731 | 334 | 104 | 11 | 1 | 301 | 1 | 253 | 8.96e-29 | 113 |
| Msa0863240 | MtrunA17_Chr5g0446231 | 45.806 | 155 | 52 | 3 | 35 | 185 | 1 | 127 | 6.74e-27 | 112 |
| Msa0863240 | MtrunA17_Chr5g0446191 | 46.053 | 152 | 50 | 3 | 38 | 185 | 19 | 142 | 1.37e-24 | 105 |
| Msa0863240 | MtrunA17_Chr5g0446181 | 41.667 | 216 | 79 | 7 | 1 | 202 | 1 | 183 | 1.50e-22 | 97.8 |
| Msa0863240 | MtrunA17_Chr5g0413371 | 34.259 | 216 | 93 | 7 | 31 | 232 | 2 | 182 | 1.80e-19 | 90.1 |
| Msa0863240 | MtrunA17_Chr5g0434161 | 58.904 | 73 | 29 | 1 | 178 | 250 | 20 | 91 | 1.34e-15 | 72.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 45 sgRNAs with CRISPR-Local
Find 118 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGATGACCCATGTTCGATTT+TGG | 0.133002 | 5_4:-63018179 | None:intergenic |
| CTCAAAACCATTACATGTTA+AGG | 0.367230 | 5_4:+63019194 | Msa0863240:CDS |
| TGAGTTAGATAATGAAGTTT+TGG | 0.377487 | 5_4:+63018738 | Msa0863240:CDS |
| GTCATTTCTTCTAAGTTATG+AGG | 0.381921 | 5_4:-63018250 | None:intergenic |
| CTTACAACACAACGTTGAAA+TGG | 0.390778 | 5_4:+63018384 | Msa0863240:CDS |
| TTGACATCCTTAACATGTAA+TGG | 0.392334 | 5_4:-63019201 | None:intergenic |
| GGGCTGCTTGCATCTTTGCC+TGG | 0.393057 | 5_4:-63019285 | None:intergenic |
| GAGAGGAACTTTGTCAGAAA+GGG | 0.410933 | 5_4:+63018449 | Msa0863240:CDS |
| TTAGCTGATAGAGTCACTAT+TGG | 0.415973 | 5_4:+63018607 | Msa0863240:CDS |
| TGAGCTAGAAGCTAAAGTTT+TGG | 0.417553 | 5_4:+63018825 | Msa0863240:CDS |
| CCAATCTTCGGGTCACTCTC+TGG | 0.419534 | 5_4:-63019355 | None:intergenic |
| AAGAAAGAAGTACGTTGAGT+TGG | 0.438659 | 5_4:+63018636 | Msa0863240:CDS |
| GGAGGATGTTGAAGCAAGTC+AGG | 0.455376 | 5_4:+63019029 | Msa0863240:CDS |
| CGAGCTTCGAAGTAAATTGA+AGG | 0.461338 | 5_4:+63018897 | Msa0863240:CDS |
| GACACATGAGGTGTTGCAAC+CGG | 0.466770 | 5_4:-63019072 | None:intergenic |
| AGAGAGGAACTTTGTCAGAA+AGG | 0.484616 | 5_4:+63018448 | Msa0863240:CDS |
| ATGTCAAGAAAGCCAAAGTC+AGG | 0.490710 | 5_4:+63019217 | Msa0863240:CDS |
| GAAGATGGTGATGAGGTTGA+TGG | 0.497731 | 5_4:+63019318 | Msa0863240:CDS |
| TCTAACACTAGACCTGACTT+TGG | 0.506997 | 5_4:-63019229 | None:intergenic |
| AGCAAGAATCACGTAGTTGG+TGG | 0.527719 | 5_4:-63018203 | None:intergenic |
| AACAAGATGATTGATGGTCC+AGG | 0.535173 | 5_4:+63019267 | Msa0863240:CDS |
| GAGGTTGATGGTATTGATGA+TGG | 0.540674 | 5_4:+63019330 | Msa0863240:CDS |
| CTTATTCGAGTCTTTGAACA+CGG | 0.544179 | 5_4:+63018972 | Msa0863240:CDS |
| TTCAGCAAGAATCACGTAGT+TGG | 0.558811 | 5_4:-63018206 | None:intergenic |
| GCATGAAAGAAATGCAAGGT+TGG | 0.577609 | 5_4:+63019008 | Msa0863240:CDS |
| TGAGTTGAGGAAACTGTTTG+AGG | 0.587379 | 5_4:+63018567 | Msa0863240:CDS |
| TGAAGTTGTAACAGATATGA+TGG | 0.587982 | 5_4:+63018225 | Msa0863240:CDS |
| TCACCATCTTCAATCACAAG+TGG | 0.589505 | 5_4:-63019306 | None:intergenic |
| AGCCCACTTGTGATTGAAGA+TGG | 0.597478 | 5_4:+63019303 | Msa0863240:CDS |
| GAAAGAGTTTCAGAAAAGAG+AGG | 0.598100 | 5_4:+63018432 | Msa0863240:CDS |
| TACTATAAATGAGAAGCGTA+AGG | 0.599833 | 5_4:+63018942 | Msa0863240:CDS |
| ATTGAACCCAAAATCGAACA+TGG | 0.604289 | 5_4:+63018172 | Msa0863240:CDS |
| GTACGTTGAGTTGGAGTGTG+AGG | 0.619740 | 5_4:+63018645 | Msa0863240:CDS |
| TGATCATGTTGCTAATGCAC+CGG | 0.622532 | 5_4:+63019053 | Msa0863240:CDS |
| GCAACACCTCATGTGTCTGA+TGG | 0.630963 | 5_4:+63019078 | Msa0863240:CDS |
| GAGAGAGGAACATTGAGTTG+AGG | 0.631931 | 5_4:+63018554 | Msa0863240:CDS |
| TGAAAGAAATGCAAGGTTGG+AGG | 0.632876 | 5_4:+63019011 | Msa0863240:CDS |
| TCTTTGAACACGGAGTTCAG+AGG | 0.634013 | 5_4:+63018982 | Msa0863240:CDS |
| TTGAAATGGAGAAACTTGCA+AGG | 0.634595 | 5_4:+63018398 | Msa0863240:CDS |
| CACCATCTTCAATCACAAGT+GGG | 0.636322 | 5_4:-63019305 | None:intergenic |
| CTGTTGTAGTACTAAGAGAG+AGG | 0.656292 | 5_4:+63018539 | Msa0863240:CDS |
| TGTGATTGAAGATGGTGATG+AGG | 0.677350 | 5_4:+63019311 | Msa0863240:CDS |
| GATTGCATGAAAGAAATGCA+AGG | 0.680697 | 5_4:+63019004 | Msa0863240:CDS |
| TTGAACCCAAAATCGAACAT+GGG | 0.683973 | 5_4:+63018173 | Msa0863240:CDS |
| TTTGTACCATCAGACACATG+AGG | 0.707522 | 5_4:-63019084 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTGTTTAAGTTATATTTTAC+AGG | + | chr5_4:63019158-63019177 | Msa0863240:intron | 15.0% |
| !!! | TTGTTTAAGTTATATTTTAC+AGG | + | chr5_4:63019158-63019177 | Msa0863240:intron | 15.0% |
| !! | GAAGTACTAAGAAAAAAGAA+TGG | + | chr5_4:63018715-63018734 | Msa0863240:CDS | 25.0% |
| !! | TGAGTTAGATAATGAAGTTT+TGG | + | chr5_4:63018738-63018757 | Msa0863240:CDS | 25.0% |
| ! | TTGAAAAACAAGATGATTGA+TGG | + | chr5_4:63019261-63019280 | Msa0863240:CDS | 25.0% |
| !! | GAAGTACTAAGAAAAAAGAA+TGG | + | chr5_4:63018715-63018734 | Msa0863240:CDS | 25.0% |
| !! | TGAGTTAGATAATGAAGTTT+TGG | + | chr5_4:63018738-63018757 | Msa0863240:CDS | 25.0% |
| ! | TTGAAAAACAAGATGATTGA+TGG | + | chr5_4:63019261-63019280 | Msa0863240:CDS | 25.0% |
| TGAAGTTGTAACAGATATGA+TGG | + | chr5_4:63018225-63018244 | Msa0863240:CDS | 30.0% | |
| GTCATTTCTTCTAAGTTATG+AGG | - | chr5_4:63018253-63018272 | None:intergenic | 30.0% | |
| GAAGTTGAAAGAAAAATGTG+TGG | + | chr5_4:63018672-63018691 | Msa0863240:CDS | 30.0% | |
| !!! | TTTTGGAGTTGAAGCAAAAA+AGG | + | chr5_4:63018755-63018774 | Msa0863240:CDS | 30.0% |
| ! | TTTGGAGTTGAAGCAAAAAA+GGG | + | chr5_4:63018756-63018775 | Msa0863240:CDS | 30.0% |
| ! | TGGAGATTTTGAATGAGAAA+TGG | + | chr5_4:63018851-63018870 | Msa0863240:CDS | 30.0% |
| ! | TACTATAAATGAGAAGCGTA+AGG | + | chr5_4:63018942-63018961 | Msa0863240:CDS | 30.0% |
| CTCAAAACCATTACATGTTA+AGG | + | chr5_4:63019194-63019213 | Msa0863240:CDS | 30.0% | |
| TTGACATCCTTAACATGTAA+TGG | - | chr5_4:63019204-63019223 | None:intergenic | 30.0% | |
| TGAAGTTGTAACAGATATGA+TGG | + | chr5_4:63018225-63018244 | Msa0863240:CDS | 30.0% | |
| GTCATTTCTTCTAAGTTATG+AGG | - | chr5_4:63018253-63018272 | None:intergenic | 30.0% | |
| GAAGTTGAAAGAAAAATGTG+TGG | + | chr5_4:63018672-63018691 | Msa0863240:CDS | 30.0% | |
| !!! | TTTTGGAGTTGAAGCAAAAA+AGG | + | chr5_4:63018755-63018774 | Msa0863240:CDS | 30.0% |
| ! | TTTGGAGTTGAAGCAAAAAA+GGG | + | chr5_4:63018756-63018775 | Msa0863240:CDS | 30.0% |
| ! | TGGAGATTTTGAATGAGAAA+TGG | + | chr5_4:63018851-63018870 | Msa0863240:CDS | 30.0% |
| ! | TACTATAAATGAGAAGCGTA+AGG | + | chr5_4:63018942-63018961 | Msa0863240:CDS | 30.0% |
| CTCAAAACCATTACATGTTA+AGG | + | chr5_4:63019194-63019213 | Msa0863240:CDS | 30.0% | |
| TTGACATCCTTAACATGTAA+TGG | - | chr5_4:63019204-63019223 | None:intergenic | 30.0% | |
| ATTGAACCCAAAATCGAACA+TGG | + | chr5_4:63018172-63018191 | Msa0863240:CDS | 35.0% | |
| TTGAACCCAAAATCGAACAT+GGG | + | chr5_4:63018173-63018192 | Msa0863240:CDS | 35.0% | |
| CTTACAACACAACGTTGAAA+TGG | + | chr5_4:63018384-63018403 | Msa0863240:CDS | 35.0% | |
| TTGAAATGGAGAAACTTGCA+AGG | + | chr5_4:63018398-63018417 | Msa0863240:CDS | 35.0% | |
| GAAAGAGTTTCAGAAAAGAG+AGG | + | chr5_4:63018432-63018451 | Msa0863240:CDS | 35.0% | |
| TTAGCTGATAGAGTCACTAT+TGG | + | chr5_4:63018607-63018626 | Msa0863240:CDS | 35.0% | |
| ! | AAGAAAGAAGTACGTTGAGT+TGG | + | chr5_4:63018636-63018655 | Msa0863240:CDS | 35.0% |
| GTTGAAAGAAAAATGTGTGG+AGG | + | chr5_4:63018675-63018694 | Msa0863240:CDS | 35.0% | |
| AAAAATGTGTGGAGGATGAT+AGG | + | chr5_4:63018683-63018702 | Msa0863240:CDS | 35.0% | |
| ! | TGAGCTAGAAGCTAAAGTTT+TGG | + | chr5_4:63018825-63018844 | Msa0863240:CDS | 35.0% |
| !!! | AGAAGCTAAAGTTTTGGAGT+TGG | + | chr5_4:63018831-63018850 | Msa0863240:CDS | 35.0% |
| CTTATTCGAGTCTTTGAACA+CGG | + | chr5_4:63018972-63018991 | Msa0863240:CDS | 35.0% | |
| GATTGCATGAAAGAAATGCA+AGG | + | chr5_4:63019004-63019023 | Msa0863240:CDS | 35.0% | |
| ATTGAACCCAAAATCGAACA+TGG | + | chr5_4:63018172-63018191 | Msa0863240:CDS | 35.0% | |
| TTGAACCCAAAATCGAACAT+GGG | + | chr5_4:63018173-63018192 | Msa0863240:CDS | 35.0% | |
| CTTACAACACAACGTTGAAA+TGG | + | chr5_4:63018384-63018403 | Msa0863240:CDS | 35.0% | |
| TTGAAATGGAGAAACTTGCA+AGG | + | chr5_4:63018398-63018417 | Msa0863240:CDS | 35.0% | |
| GAAAGAGTTTCAGAAAAGAG+AGG | + | chr5_4:63018432-63018451 | Msa0863240:CDS | 35.0% | |
| TTAGCTGATAGAGTCACTAT+TGG | + | chr5_4:63018607-63018626 | Msa0863240:CDS | 35.0% | |
| ! | AAGAAAGAAGTACGTTGAGT+TGG | + | chr5_4:63018636-63018655 | Msa0863240:CDS | 35.0% |
| GTTGAAAGAAAAATGTGTGG+AGG | + | chr5_4:63018675-63018694 | Msa0863240:CDS | 35.0% | |
| AAAAATGTGTGGAGGATGAT+AGG | + | chr5_4:63018683-63018702 | Msa0863240:CDS | 35.0% | |
| ! | TGAGCTAGAAGCTAAAGTTT+TGG | + | chr5_4:63018825-63018844 | Msa0863240:CDS | 35.0% |
| !!! | AGAAGCTAAAGTTTTGGAGT+TGG | + | chr5_4:63018831-63018850 | Msa0863240:CDS | 35.0% |
| CTTATTCGAGTCTTTGAACA+CGG | + | chr5_4:63018972-63018991 | Msa0863240:CDS | 35.0% | |
| GATTGCATGAAAGAAATGCA+AGG | + | chr5_4:63019004-63019023 | Msa0863240:CDS | 35.0% | |
| ! | GATGACCCATGTTCGATTTT+GGG | - | chr5_4:63018181-63018200 | None:intergenic | 40.0% |
| ! | AGATGACCCATGTTCGATTT+TGG | - | chr5_4:63018182-63018201 | None:intergenic | 40.0% |
| TTCAGCAAGAATCACGTAGT+TGG | - | chr5_4:63018209-63018228 | None:intergenic | 40.0% | |
| AGAGAGGAACTTTGTCAGAA+AGG | + | chr5_4:63018448-63018467 | Msa0863240:CDS | 40.0% | |
| GAGAGGAACTTTGTCAGAAA+GGG | + | chr5_4:63018449-63018468 | Msa0863240:CDS | 40.0% | |
| CTGTTGTAGTACTAAGAGAG+AGG | + | chr5_4:63018539-63018558 | Msa0863240:CDS | 40.0% | |
| ! | TGAGTTGAGGAAACTGTTTG+AGG | + | chr5_4:63018567-63018586 | Msa0863240:CDS | 40.0% |
| CGAGCTTCGAAGTAAATTGA+AGG | + | chr5_4:63018897-63018916 | Msa0863240:CDS | 40.0% | |
| GCATGAAAGAAATGCAAGGT+TGG | + | chr5_4:63019008-63019027 | Msa0863240:CDS | 40.0% | |
| TGAAAGAAATGCAAGGTTGG+AGG | + | chr5_4:63019011-63019030 | Msa0863240:CDS | 40.0% | |
| TGATCATGTTGCTAATGCAC+CGG | + | chr5_4:63019053-63019072 | Msa0863240:CDS | 40.0% | |
| TTTGTACCATCAGACACATG+AGG | - | chr5_4:63019087-63019106 | None:intergenic | 40.0% | |
| ATGTCAAGAAAGCCAAAGTC+AGG | + | chr5_4:63019217-63019236 | Msa0863240:CDS | 40.0% | |
| TCTAACACTAGACCTGACTT+TGG | - | chr5_4:63019232-63019251 | None:intergenic | 40.0% | |
| ! | AACAAGATGATTGATGGTCC+AGG | + | chr5_4:63019267-63019286 | Msa0863240:CDS | 40.0% |
| CACCATCTTCAATCACAAGT+GGG | - | chr5_4:63019308-63019327 | None:intergenic | 40.0% | |
| TCACCATCTTCAATCACAAG+TGG | - | chr5_4:63019309-63019328 | None:intergenic | 40.0% | |
| ! | TGTGATTGAAGATGGTGATG+AGG | + | chr5_4:63019311-63019330 | Msa0863240:CDS | 40.0% |
| !! | GAGGTTGATGGTATTGATGA+TGG | + | chr5_4:63019330-63019349 | Msa0863240:CDS | 40.0% |
| ! | GATGACCCATGTTCGATTTT+GGG | - | chr5_4:63018181-63018200 | None:intergenic | 40.0% |
| ! | AGATGACCCATGTTCGATTT+TGG | - | chr5_4:63018182-63018201 | None:intergenic | 40.0% |
| TTCAGCAAGAATCACGTAGT+TGG | - | chr5_4:63018209-63018228 | None:intergenic | 40.0% | |
| AGAGAGGAACTTTGTCAGAA+AGG | + | chr5_4:63018448-63018467 | Msa0863240:CDS | 40.0% | |
| GAGAGGAACTTTGTCAGAAA+GGG | + | chr5_4:63018449-63018468 | Msa0863240:CDS | 40.0% | |
| CTGTTGTAGTACTAAGAGAG+AGG | + | chr5_4:63018539-63018558 | Msa0863240:CDS | 40.0% | |
| ! | TGAGTTGAGGAAACTGTTTG+AGG | + | chr5_4:63018567-63018586 | Msa0863240:CDS | 40.0% |
| CGAGCTTCGAAGTAAATTGA+AGG | + | chr5_4:63018897-63018916 | Msa0863240:CDS | 40.0% | |
| GCATGAAAGAAATGCAAGGT+TGG | + | chr5_4:63019008-63019027 | Msa0863240:CDS | 40.0% | |
| TGAAAGAAATGCAAGGTTGG+AGG | + | chr5_4:63019011-63019030 | Msa0863240:CDS | 40.0% | |
| TGATCATGTTGCTAATGCAC+CGG | + | chr5_4:63019053-63019072 | Msa0863240:CDS | 40.0% | |
| TTTGTACCATCAGACACATG+AGG | - | chr5_4:63019087-63019106 | None:intergenic | 40.0% | |
| ATGTCAAGAAAGCCAAAGTC+AGG | + | chr5_4:63019217-63019236 | Msa0863240:CDS | 40.0% | |
| TCTAACACTAGACCTGACTT+TGG | - | chr5_4:63019232-63019251 | None:intergenic | 40.0% | |
| ! | AACAAGATGATTGATGGTCC+AGG | + | chr5_4:63019267-63019286 | Msa0863240:CDS | 40.0% |
| CACCATCTTCAATCACAAGT+GGG | - | chr5_4:63019308-63019327 | None:intergenic | 40.0% | |
| TCACCATCTTCAATCACAAG+TGG | - | chr5_4:63019309-63019328 | None:intergenic | 40.0% | |
| ! | TGTGATTGAAGATGGTGATG+AGG | + | chr5_4:63019311-63019330 | Msa0863240:CDS | 40.0% |
| !! | GAGGTTGATGGTATTGATGA+TGG | + | chr5_4:63019330-63019349 | Msa0863240:CDS | 40.0% |
| AGCAAGAATCACGTAGTTGG+TGG | - | chr5_4:63018206-63018225 | None:intergenic | 45.0% | |
| ! | GAGAGAGGAACATTGAGTTG+AGG | + | chr5_4:63018554-63018573 | Msa0863240:CDS | 45.0% |
| GGAGTTGAAGCAAAAAAGGG+TGG | + | chr5_4:63018759-63018778 | Msa0863240:CDS | 45.0% | |
| GTTGAAGCAAAAAAGGGTGG+AGG | + | chr5_4:63018762-63018781 | Msa0863240:CDS | 45.0% | |
| AAGCAAAAAAGGGTGGAGGA+TGG | + | chr5_4:63018766-63018785 | Msa0863240:CDS | 45.0% | |
| AGCAAAAAAGGGTGGAGGAT+GGG | + | chr5_4:63018767-63018786 | Msa0863240:CDS | 45.0% | |
| TCTTTGAACACGGAGTTCAG+AGG | + | chr5_4:63018982-63019001 | Msa0863240:CDS | 45.0% | |
| AGCCCACTTGTGATTGAAGA+TGG | + | chr5_4:63019303-63019322 | Msa0863240:CDS | 45.0% | |
| ! | GAAGATGGTGATGAGGTTGA+TGG | + | chr5_4:63019318-63019337 | Msa0863240:CDS | 45.0% |
| AGCAAGAATCACGTAGTTGG+TGG | - | chr5_4:63018206-63018225 | None:intergenic | 45.0% | |
| ! | GAGAGAGGAACATTGAGTTG+AGG | + | chr5_4:63018554-63018573 | Msa0863240:CDS | 45.0% |
| GGAGTTGAAGCAAAAAAGGG+TGG | + | chr5_4:63018759-63018778 | Msa0863240:CDS | 45.0% | |
| GTTGAAGCAAAAAAGGGTGG+AGG | + | chr5_4:63018762-63018781 | Msa0863240:CDS | 45.0% | |
| AAGCAAAAAAGGGTGGAGGA+TGG | + | chr5_4:63018766-63018785 | Msa0863240:CDS | 45.0% | |
| AGCAAAAAAGGGTGGAGGAT+GGG | + | chr5_4:63018767-63018786 | Msa0863240:CDS | 45.0% | |
| TCTTTGAACACGGAGTTCAG+AGG | + | chr5_4:63018982-63019001 | Msa0863240:CDS | 45.0% | |
| AGCCCACTTGTGATTGAAGA+TGG | + | chr5_4:63019303-63019322 | Msa0863240:CDS | 45.0% | |
| ! | GAAGATGGTGATGAGGTTGA+TGG | + | chr5_4:63019318-63019337 | Msa0863240:CDS | 45.0% |
| !! | GTACGTTGAGTTGGAGTGTG+AGG | + | chr5_4:63018645-63018664 | Msa0863240:CDS | 50.0% |
| GGAGGATGTTGAAGCAAGTC+AGG | + | chr5_4:63019029-63019048 | Msa0863240:CDS | 50.0% | |
| !! | GACACATGAGGTGTTGCAAC+CGG | - | chr5_4:63019075-63019094 | None:intergenic | 50.0% |
| GCAACACCTCATGTGTCTGA+TGG | + | chr5_4:63019078-63019097 | Msa0863240:CDS | 50.0% | |
| !! | GTACGTTGAGTTGGAGTGTG+AGG | + | chr5_4:63018645-63018664 | Msa0863240:CDS | 50.0% |
| GGAGGATGTTGAAGCAAGTC+AGG | + | chr5_4:63019029-63019048 | Msa0863240:CDS | 50.0% | |
| !! | GACACATGAGGTGTTGCAAC+CGG | - | chr5_4:63019075-63019094 | None:intergenic | 50.0% |
| GCAACACCTCATGTGTCTGA+TGG | + | chr5_4:63019078-63019097 | Msa0863240:CDS | 50.0% | |
| GGGCTGCTTGCATCTTTGCC+TGG | - | chr5_4:63019288-63019307 | None:intergenic | 60.0% | |
| GGGCTGCTTGCATCTTTGCC+TGG | - | chr5_4:63019288-63019307 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 63018166 | 63019365 | 63018166 | ID=Msa0863240;Name=Msa0863240 |
| chr5_4 | mRNA | 63018166 | 63019365 | 63018166 | ID=Msa0863240-mRNA-1;Parent=Msa0863240;Name=Msa0863240-mRNA-1;_AED=0.00;_eAED=0.01;_QI=0|1|0|1|1|1|2|0|375 |
| chr5_4 | exon | 63018166 | 63019107 | 63018166 | ID=Msa0863240-mRNA-1:exon:19758;Parent=Msa0863240-mRNA-1 |
| chr5_4 | exon | 63019180 | 63019365 | 63019180 | ID=Msa0863240-mRNA-1:exon:19759;Parent=Msa0863240-mRNA-1 |
| chr5_4 | CDS | 63018166 | 63019107 | 63018166 | ID=Msa0863240-mRNA-1:cds;Parent=Msa0863240-mRNA-1 |
| chr5_4 | CDS | 63019180 | 63019365 | 63019180 | ID=Msa0863240-mRNA-1:cds;Parent=Msa0863240-mRNA-1 |
| Gene Sequence |
| Protein sequence |
