Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0743140 | XP_003630286.1 | 93.418 | 395 | 16 | 5 | 1 | 390 | 1 | 390 | 0.0 | 696 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0743140 | sp|P52424|PUR5_VIGUN | 78.626 | 393 | 74 | 4 | 1 | 389 | 1 | 387 | 0.0 | 613 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0743140 | B7FJ14 | 93.418 | 395 | 16 | 5 | 1 | 390 | 1 | 390 | 0.0 | 696 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0743140 | Msa0863290 | 0.819802 | 9.591923e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0743140 | MtrunA17_Chr8g0384411 | 93.418 | 395 | 16 | 5 | 1 | 390 | 1 | 390 | 0.0 | 696 |
| Msa0743140 | MtrunA17_Chr5g0444911 | 91.228 | 114 | 10 | 0 | 277 | 390 | 40 | 153 | 2.59e-70 | 218 |
| Msa0743140 | MtrunA17_Chr5g0444901 | 76.923 | 65 | 8 | 2 | 44 | 108 | 1 | 58 | 1.42e-22 | 90.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0743140 | AT3G55010.2 | 71.129 | 381 | 95 | 5 | 10 | 389 | 22 | 388 | 0.0 | 513 |
| Msa0743140 | AT3G55010.1 | 71.129 | 381 | 95 | 5 | 10 | 389 | 22 | 388 | 0.0 | 513 |
Find 119 sgRNAs with CRISPR-Local
Find 248 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACAGTTGCAGAAGCTTTAA+TGG | 0.186823 | 5_1:+63261368 | Msa0743140:CDS |
| TCTCTTCTTCAGGTTATAAA+AGG | 0.219818 | 5_1:+63260272 | Msa0743140:intron |
| TGAAACCGCCACCAGTAATA+TGG | 0.229484 | 5_1:-63261549 | None:intergenic |
| ATGCATTATATTCATATCTT+TGG | 0.241957 | 5_1:+63262137 | Msa0743140:three_prime_UTR |
| GAGAGAAGCGTAGGTTAGTT+AGG | 0.271177 | 5_1:-63258840 | None:intergenic |
| CTGGCATTCATGACACTATT+GGG | 0.307297 | 5_1:+63259981 | Msa0743140:CDS |
| GTCAATGACATTGTTACTTC+GGG | 0.311408 | 5_1:+63260107 | Msa0743140:CDS |
| GTTGCTGTTAGAGCTGAATT+AGG | 0.320323 | 5_1:+63259074 | Msa0743140:CDS |
| ATCTTAGCGGTTGTGCGGTT+GGG | 0.343417 | 5_1:+63261105 | Msa0743140:CDS |
| ATAGAAGCACCAAAACCTTC+TGG | 0.347224 | 5_1:-63261595 | None:intergenic |
| ACTGGCATTCATGACACTAT+TGG | 0.351495 | 5_1:+63259980 | Msa0743140:CDS |
| TGTTTAACATAGATCTTAGT+TGG | 0.359529 | 5_1:-63261393 | None:intergenic |
| GTGATTGTAGCAGTGCATTT+AGG | 0.364093 | 5_1:-63258960 | None:intergenic |
| GTGATGCTTGCCTTTGAAAC+TGG | 0.364727 | 5_1:+63259962 | Msa0743140:CDS |
| AAGGGAATTGCCCATATTAC+TGG | 0.366271 | 5_1:+63261538 | Msa0743140:CDS |
| ACCAATCCCGGGAGCCATCT+TGG | 0.375081 | 5_1:-63259165 | None:intergenic |
| GTTATAAAAGGAATTGTTGA+TGG | 0.376433 | 5_1:+63260284 | Msa0743140:CDS |
| TTTAACAAAGCAATGAGTTT+CGG | 0.377479 | 5_1:+63258891 | Msa0743140:exon |
| AACTAAGATCTATGTTAAAC+AGG | 0.388871 | 5_1:+63261395 | Msa0743140:CDS |
| GTTTAGCTTGTTTATAACTT+TGG | 0.389752 | 5_1:+63261976 | Msa0743140:exon |
| TCAAGTGGAGTTCACTCTAA+TGG | 0.393600 | 5_1:+63261197 | Msa0743140:CDS |
| TTAGAGTGAACTCCACTTGA+TGG | 0.400231 | 5_1:-63261194 | None:intergenic |
| GCTGCGCGTGCGTGCGTGTT+CGG | 0.410852 | 5_1:-63258741 | None:intergenic |
| TGATGTGGGTGTTGCTGAAC+AGG | 0.415280 | 5_1:+63260175 | Msa0743140:CDS |
| GCTCCCGGGATTGGTGGCTT+CGG | 0.417133 | 5_1:+63259173 | Msa0743140:CDS |
| ACCGCGGGCGACATTCTTAT+CGG | 0.417757 | 5_1:+63261167 | Msa0743140:CDS |
| GGTGATTCATATCTCGTTGC+TGG | 0.425062 | 5_1:+63259917 | Msa0743140:intron |
| CAATCTGATTGTGCTCTTCT+CGG | 0.426140 | 5_1:+63260314 | Msa0743140:CDS |
| TTCCTAGATTACTTTGCTAC+TGG | 0.434841 | 5_1:+63260146 | Msa0743140:CDS |
| CCCGGGATTGGTGGCTTCGG+TGG | 0.435733 | 5_1:+63259176 | Msa0743140:CDS |
| AGTATTCTATTAGCTGCCTC+TGG | 0.440480 | 5_1:-63261878 | None:intergenic |
| TCATACTTTAGAAATCTAGA+AGG | 0.441252 | 5_1:-63262066 | None:intergenic |
| GATCTTAGCGGTTGTGCGGT+TGG | 0.444233 | 5_1:+63261104 | Msa0743140:CDS |
| ACCACCGAAGCCACCAATCC+CGG | 0.448332 | 5_1:-63259177 | None:intergenic |
| GCCAAGATGGCTCCCGGGAT+TGG | 0.453678 | 5_1:+63259164 | Msa0743140:CDS |
| TGCTACTGGTCACCTTGATG+TGG | 0.461882 | 5_1:+63260160 | Msa0743140:CDS |
| GACCAGTAGCAAAGTAATCT+AGG | 0.464226 | 5_1:-63260148 | None:intergenic |
| GCAACTGTAGTGCTAGCGCC+AGG | 0.466715 | 5_1:-63261354 | None:intergenic |
| CGTCAATGACATTGTTACTT+CGG | 0.471639 | 5_1:+63260106 | Msa0743140:CDS |
| GTCAGCAAAGGAGGGGTAAA+GGG | 0.471923 | 5_1:+63261520 | Msa0743140:CDS |
| AAGAAAGATTCCGTTATCAA+TGG | 0.474326 | 5_1:+63261134 | Msa0743140:CDS |
| AGTCAGCAAAGGAGGGGTAA+AGG | 0.475808 | 5_1:+63261519 | Msa0743140:CDS |
| TGACACTATTGGGATTGATC+TGG | 0.476022 | 5_1:+63259991 | Msa0743140:CDS |
| TTTCAGACTGCAGAGATGCC+TGG | 0.478402 | 5_1:+63261059 | Msa0743140:intron |
| AGAGAAGCGTAGGTTAGTTA+GGG | 0.484370 | 5_1:-63258839 | None:intergenic |
| ATTGCTTTGTTAAAGAGTGA+TGG | 0.489650 | 5_1:-63258882 | None:intergenic |
| AAGATGGCTCCCGGGATTGG+TGG | 0.498402 | 5_1:+63259167 | Msa0743140:CDS |
| GGTTTAACTGATGCAGCTGC+GGG | 0.504562 | 5_1:-63258939 | None:intergenic |
| GAAACCGCCACCAGTAATAT+GGG | 0.506817 | 5_1:-63261548 | None:intergenic |
| GGTGAAGTTATTAGCGGAAA+GGG | 0.508573 | 5_1:+63261938 | Msa0743140:CDS |
| AGAATTGCCAAGATGGCTCC+CGG | 0.510784 | 5_1:+63259158 | Msa0743140:CDS |
| CCACCGAAGCCACCAATCCC+GGG | 0.518062 | 5_1:-63259176 | None:intergenic |
| TTGCTGGTACTGATGGTGTT+GGG | 0.519574 | 5_1:+63259933 | Msa0743140:CDS |
| CTGCCTCTGGAGTGACTACA+AGG | 0.520084 | 5_1:-63261865 | None:intergenic |
| AGGTCAAGGTCTTACTTACA+AGG | 0.523785 | 5_1:+63259094 | Msa0743140:CDS |
| TGTTCGAAGAATTGCCAAGA+TGG | 0.524535 | 5_1:+63259151 | Msa0743140:CDS |
| GGTCGGTGACGGTGGCGGAA+AGG | 0.529061 | 5_1:-63258768 | None:intergenic |
| GTCATGAATGCCAGTTTCAA+AGG | 0.530046 | 5_1:-63259972 | None:intergenic |
| ACCGTCGTCTCTTCTCTCTC+AGG | 0.530168 | 5_1:+63258788 | Msa0743140:five_prime_UTR |
| ACGACGGTCGGTGACGGTGG+CGG | 0.530805 | 5_1:-63258773 | None:intergenic |
| TGAAGCCATTTGAAAACTGC+AGG | 0.535533 | 5_1:-63261640 | None:intergenic |
| TATCTCGTTGCTGGTACTGA+TGG | 0.539782 | 5_1:+63259926 | Msa0743140:CDS |
| GCTACTGGTCACCTTGATGT+GGG | 0.542056 | 5_1:+63260161 | Msa0743140:CDS |
| TCATTGAAAGATAAACTCCC+TGG | 0.543700 | 5_1:+63261336 | Msa0743140:CDS |
| GTGCGTGTTCGGAAAGAAGA+AGG | 0.545066 | 5_1:-63258730 | None:intergenic |
| GTTGCTGGTACTGATGGTGT+TGG | 0.546250 | 5_1:+63259932 | Msa0743140:CDS |
| ATTGCCCATATTACTGGTGG+CGG | 0.548526 | 5_1:+63261544 | Msa0743140:CDS |
| GGAGGGTAGGTCTGCTACAT+CGG | 0.552709 | 5_1:-63262202 | None:intergenic |
| CGCATAGGTGAAGTTATTAG+CGG | 0.554142 | 5_1:+63261932 | Msa0743140:CDS |
| AGGTTTAACTGATGCAGCTG+CGG | 0.556996 | 5_1:-63258940 | None:intergenic |
| TCGGATGGAATGCCTTCAGT+TGG | 0.558835 | 5_1:-63262183 | None:intergenic |
| GGTAGGTCTGCTACATCGGA+TGG | 0.562809 | 5_1:-63262198 | None:intergenic |
| TTTGTTAAAGAGTGATGGAA+TGG | 0.578407 | 5_1:-63258877 | None:intergenic |
| AGAAGAAGGAAACGCGATGG+TGG | 0.581291 | 5_1:-63258716 | None:intergenic |
| TTCTATATACAAAGACTCGT+GGG | 0.583148 | 5_1:+63261612 | Msa0743140:CDS |
| AGGTGAAGTTATTAGCGGAA+AGG | 0.587730 | 5_1:+63261937 | Msa0743140:CDS |
| ATGCCTGGTCTATACAAAGA+AGG | 0.589062 | 5_1:+63261074 | Msa0743140:CDS |
| GAATTGCCAAGATGGCTCCC+GGG | 0.589431 | 5_1:+63259159 | Msa0743140:CDS |
| CGCTAATAACTTCACCTATG+CGG | 0.589870 | 5_1:-63261931 | None:intergenic |
| GAAGGTGAGTATGATCTTAG+CGG | 0.592236 | 5_1:+63261092 | Msa0743140:CDS |
| GAAGAGACGACGGTCGGTGA+CGG | 0.597091 | 5_1:-63258779 | None:intergenic |
| CTTATCGGTTTACCATCAAG+TGG | 0.597195 | 5_1:+63261182 | Msa0743140:CDS |
| CTTCTATATACAAAGACTCG+TGG | 0.598028 | 5_1:+63261611 | Msa0743140:CDS |
| GTTCAGCAACACCCACATCA+AGG | 0.598674 | 5_1:-63260172 | None:intergenic |
| GAAGAAGGAAACGCGATGGT+GGG | 0.598740 | 5_1:-63258715 | None:intergenic |
| CAATGACATTGTTACTTCGG+GGG | 0.601621 | 5_1:+63260109 | Msa0743140:CDS |
| GAGACGACGGTCGGTGACGG+TGG | 0.601988 | 5_1:-63258776 | None:intergenic |
| AGTTTGCGCATTGCAATCAT+CGG | 0.603157 | 5_1:+63258987 | Msa0743140:CDS |
| ACAGAGAAAGCCTACCGCAT+AGG | 0.605304 | 5_1:+63261917 | Msa0743140:CDS |
| TCACCTTCTTTGTATAGACC+AGG | 0.605966 | 5_1:-63261077 | None:intergenic |
| ATATATGAAGAGAGAAGCGT+AGG | 0.607185 | 5_1:-63258849 | None:intergenic |
| ACCAGCGTCAATGTCAACTC+CGG | 0.611044 | 5_1:-63259120 | None:intergenic |
| GTATAGAAAGATCCAACTGA+AGG | 0.614636 | 5_1:+63262171 | Msa0743140:three_prime_UTR |
| TCCGGAGTTGACATTGACGC+TGG | 0.615130 | 5_1:+63259119 | Msa0743140:CDS |
| AATAACTTCACCTATGCGGT+AGG | 0.617101 | 5_1:-63261927 | None:intergenic |
| GATTGCAATGCGCAAACTGT+GGG | 0.617632 | 5_1:-63258982 | None:intergenic |
| CAACTGTAGTGCTAGCGCCA+GGG | 0.619110 | 5_1:-63261353 | None:intergenic |
| GTTAGAGCTGAATTAGGTCA+AGG | 0.619293 | 5_1:+63259080 | Msa0743140:CDS |
| TTGACATAGTCAGCAAAGGA+GGG | 0.619945 | 5_1:+63261512 | Msa0743140:CDS |
| CTTGACATAGTCAGCAAAGG+AGG | 0.620172 | 5_1:+63261511 | Msa0743140:CDS |
| TTGTGCTCTTCTCGGAGGAG+AGG | 0.621414 | 5_1:+63260322 | Msa0743140:CDS |
| TCAATGACATTGTTACTTCG+GGG | 0.633382 | 5_1:+63260108 | Msa0743140:CDS |
| GGTAGAGTACTTGAGAAAAG+CGG | 0.636828 | 5_1:+63261309 | Msa0743140:intron |
| TGACATAGTCAGCAAAGGAG+GGG | 0.637780 | 5_1:+63261513 | Msa0743140:CDS |
| AATGGAAAAGACATTACCGC+GGG | 0.638544 | 5_1:+63261152 | Msa0743140:CDS |
| GTGCTTGACATAGTCAGCAA+AGG | 0.639899 | 5_1:+63261508 | Msa0743140:CDS |
| GGTCTTACTTACAAGGACTC+CGG | 0.645432 | 5_1:+63259101 | Msa0743140:CDS |
| TACTGATGGTGTTGGGACGA+AGG | 0.646206 | 5_1:+63259940 | Msa0743140:CDS |
| TGATTGCAATGCGCAAACTG+TGG | 0.663822 | 5_1:-63258983 | None:intergenic |
| GGAATTGCCCATATTACTGG+TGG | 0.664696 | 5_1:+63261541 | Msa0743140:CDS |
| TCTGATTGTGCTCTTCTCGG+AGG | 0.665825 | 5_1:+63260317 | Msa0743140:CDS |
| TTGCGCATTGCAATCATCGG+CGG | 0.667832 | 5_1:+63258990 | Msa0743140:CDS |
| GTATGATCTTAGCGGTTGTG+CGG | 0.677156 | 5_1:+63261100 | Msa0743140:CDS |
| GAAAGAAGAAGGAAACGCGA+TGG | 0.679295 | 5_1:-63258719 | None:intergenic |
| ACCGATAAGAATGTCGCCCG+CGG | 0.680506 | 5_1:-63261168 | None:intergenic |
| GAGAGAGAAGAGACGACGGT+CGG | 0.682133 | 5_1:-63258785 | None:intergenic |
| GGTCCTTGTAGTCACTCCAG+AGG | 0.685578 | 5_1:+63261862 | Msa0743140:CDS |
| ACCTGAGAGAGAAGAGACGA+CGG | 0.692035 | 5_1:-63258789 | None:intergenic |
| CAATGGAAAAGACATTACCG+CGG | 0.734778 | 5_1:+63261151 | Msa0743140:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTATATTTTATAAAATTAT+TGG | + | chr5_1:63261260-63261279 | Msa0743140:intron | 0.0% |
| !!! | TGAAATATATCAATATATTT+TGG | + | chr5_1:63261288-63261307 | Msa0743140:intron | 10.0% |
| !! | AAAAGAATCTTTAAATTACA+AGG | - | chr5_1:63259619-63259638 | None:intergenic | 15.0% |
| !! | ATATATTGATATATTTCAGT+AGG | - | chr5_1:63261286-63261305 | None:intergenic | 15.0% |
| !!! | ATAATGCATTAAAATTTTGA+GGG | - | chr5_1:63262126-63262145 | None:intergenic | 15.0% |
| !!! | TATAATGCATTAAAATTTTG+AGG | - | chr5_1:63262127-63262146 | None:intergenic | 15.0% |
| !! | ACATCAAATTTCAGAATTAA+AGG | + | chr5_1:63259655-63259674 | Msa0743140:intron | 20.0% |
| !! | CAAAGAATCTTTAAATTACA+AGG | + | chr5_1:63259763-63259782 | Msa0743140:intron | 20.0% |
| !!! | TTTGTTTAGTTCCTTTTTAT+TGG | + | chr5_1:63259869-63259888 | Msa0743140:intron | 20.0% |
| !! | CAAATCAATATCCAATAAAA+AGG | - | chr5_1:63259883-63259902 | None:intergenic | 20.0% |
| !! | AAGTAATCTAGGAAAAATAA+AGG | - | chr5_1:63260140-63260159 | None:intergenic | 20.0% |
| !!! | TAAATGGTTTTATTGGAATT+TGG | + | chr5_1:63260689-63260708 | Msa0743140:intron | 20.0% |
| !! | AAGTGTATAAAACTAATTAG+AGG | - | chr5_1:63261040-63261059 | None:intergenic | 20.0% |
| !!! | AATTTGATCTTCAAATCTTT+TGG | + | chr5_1:63261745-63261764 | Msa0743140:intron | 20.0% |
| !! | ATGCATTATATTCATATCTT+TGG | + | chr5_1:63262137-63262156 | Msa0743140:three_prime_UTR | 20.0% |
| ! | TTTAACAAAGCAATGAGTTT+CGG | + | chr5_1:63258891-63258910 | Msa0743140:exon | 25.0% |
| ! | AAAGAAAAATGAGTTACCAA+GGG | - | chr5_1:63259210-63259229 | None:intergenic | 25.0% |
| ! | AAAAGAAAAATGAGTTACCA+AGG | - | chr5_1:63259211-63259230 | None:intergenic | 25.0% |
| ! | AATCAATTCTACATGCAAAA+TGG | - | chr5_1:63259249-63259268 | None:intergenic | 25.0% |
| !! | TAGAATTGATTCTAACGTAA+CGG | + | chr5_1:63259258-63259277 | Msa0743140:intron | 25.0% |
| !! | GCAAAAAACATTTTTACAGT+GGG | - | chr5_1:63259588-63259607 | None:intergenic | 25.0% |
| !! | TGCAAAAAACATTTTTACAG+TGG | - | chr5_1:63259589-63259608 | None:intergenic | 25.0% |
| ! | GAATCTTTAAATTACAAGGT+TGG | - | chr5_1:63259767-63259786 | None:intergenic | 25.0% |
| !!! | TAATTCTGAAATTTGATGTC+AGG | - | chr5_1:63259654-63259673 | None:intergenic | 25.0% |
| !!! | TTCAGAATTAAAGGTACTTT+TGG | + | chr5_1:63259664-63259683 | Msa0743140:intron | 25.0% |
| ! | ACAAAATAAATGATGTGGTA+GGG | - | chr5_1:63259715-63259734 | None:intergenic | 25.0% |
| ! | TACAAAATAAATGATGTGGT+AGG | - | chr5_1:63259716-63259735 | None:intergenic | 25.0% |
| ! | ACTGTACAAAATAAATGATG+TGG | - | chr5_1:63259720-63259739 | None:intergenic | 25.0% |
| ! | GAATCTTTAAATTACAAGGT+TGG | + | chr5_1:63259767-63259786 | Msa0743140:intron | 25.0% |
| ! | AAAAGGAACTAAACAAACAA+GGG | - | chr5_1:63259866-63259885 | None:intergenic | 25.0% |
| ! | AAAAAGGAACTAAACAAACA+AGG | - | chr5_1:63259867-63259886 | None:intergenic | 25.0% |
| !!! | TTTTGATTGTTTTTCTCTCT+AGG | + | chr5_1:63260073-63260092 | Msa0743140:intron | 25.0% |
| ! | GTTATAAAAGGAATTGTTGA+TGG | + | chr5_1:63260284-63260303 | Msa0743140:CDS | 25.0% |
| !!! | AGAGGTATTGAAATATTTTG+TGG | + | chr5_1:63260340-63260359 | Msa0743140:intron | 25.0% |
| ! | TGCCAACTCATAATAAATTT+AGG | + | chr5_1:63260402-63260421 | Msa0743140:intron | 25.0% |
| ! | GCCAACTCATAATAAATTTA+GGG | + | chr5_1:63260403-63260422 | Msa0743140:intron | 25.0% |
| ! | ACCCTAAATTTATTATGAGT+TGG | - | chr5_1:63260407-63260426 | None:intergenic | 25.0% |
| !! | CAATAAAACCATTTAGAATG+AGG | - | chr5_1:63260684-63260703 | None:intergenic | 25.0% |
| !!! | CTCATTCTAAATGGTTTTAT+TGG | + | chr5_1:63260682-63260701 | Msa0743140:intron | 25.0% |
| ! | AAGTCGTAATTCTTCTTATT+AGG | + | chr5_1:63260735-63260754 | Msa0743140:intron | 25.0% |
| !! | GACATTTTCAATTGCTTATT+TGG | + | chr5_1:63260762-63260781 | Msa0743140:intron | 25.0% |
| ! | TTTCAATTGCTTATTTGGAT+AGG | + | chr5_1:63260767-63260786 | Msa0743140:intron | 25.0% |
| ! | GGTTTGAATAAAATGTCAAT+AGG | - | chr5_1:63260859-63260878 | None:intergenic | 25.0% |
| ! | TAAGATTGCAATAAGCTAAT+GGG | - | chr5_1:63260881-63260900 | None:intergenic | 25.0% |
| ! | ATAAGATTGCAATAAGCTAA+TGG | - | chr5_1:63260882-63260901 | None:intergenic | 25.0% |
| !! | AATGTCTTTTCCATTGATAA+CGG | - | chr5_1:63261147-63261166 | None:intergenic | 25.0% |
| ! | TGTTTAACATAGATCTTAGT+TGG | - | chr5_1:63261396-63261415 | None:intergenic | 25.0% |
| ! | AACTAAGATCTATGTTAAAC+AGG | + | chr5_1:63261395-63261414 | Msa0743140:CDS | 25.0% |
| !!! | GTTTAGCTTGTTTATAACTT+TGG | + | chr5_1:63261976-63261995 | Msa0743140:exon | 25.0% |
| !! | TCATACTTTAGAAATCTAGA+AGG | - | chr5_1:63262069-63262088 | None:intergenic | 25.0% |
| !!! | GAGAAATGAGTTTTAAATGA+TGG | + | chr5_1:63262087-63262106 | Msa0743140:three_prime_UTR | 25.0% |
| ! | TTTGTTAAAGAGTGATGGAA+TGG | - | chr5_1:63258880-63258899 | None:intergenic | 30.0% |
| ! | ATTGCTTTGTTAAAGAGTGA+TGG | - | chr5_1:63258885-63258904 | None:intergenic | 30.0% |
| AAGAAAAATGAGTTACCAAG+GGG | - | chr5_1:63259209-63259228 | None:intergenic | 30.0% | |
| ATTCTACATGCAAAATGGAA+TGG | - | chr5_1:63259244-63259263 | None:intergenic | 30.0% | |
| TTAAGCGCTTATAGCATAAA+CGG | - | chr5_1:63259445-63259464 | None:intergenic | 30.0% | |
| TCAAACAAGGAAATTACAGA+CGG | + | chr5_1:63259794-63259813 | Msa0743140:intron | 30.0% | |
| ! | GATTGATCTGGTAAACATTT+TGG | + | chr5_1:63260003-63260022 | Msa0743140:intron | 30.0% |
| ! | TTTGAGTGTTTCTGTTACTT+AGG | + | chr5_1:63260043-63260062 | Msa0743140:intron | 30.0% |
| ! | TTGAGTGTTTCTGTTACTTA+GGG | + | chr5_1:63260044-63260063 | Msa0743140:intron | 30.0% |
| GAGAAAATCAAATGAGGAAT+AGG | - | chr5_1:63260256-63260275 | None:intergenic | 30.0% | |
| GAAGAAGAGAAAATCAAATG+AGG | - | chr5_1:63260262-63260281 | None:intergenic | 30.0% | |
| !! | CATTTGATTTTCTCTTCTTC+AGG | + | chr5_1:63260262-63260281 | Msa0743140:intron | 30.0% |
| ! | TCTCTTCTTCAGGTTATAAA+AGG | + | chr5_1:63260272-63260291 | Msa0743140:intron | 30.0% |
| TGTGGTTTATTCTTTCCAAT+TGG | + | chr5_1:63260358-63260377 | Msa0743140:intron | 30.0% | |
| ATTGCTAGTATCTGATATTG+AGG | + | chr5_1:63260487-63260506 | Msa0743140:intron | 30.0% | |
| TTGCTAGTATCTGATATTGA+GGG | + | chr5_1:63260488-63260507 | Msa0743140:intron | 30.0% | |
| AGAAAACCACAATAGAACAA+AGG | + | chr5_1:63260578-63260597 | Msa0743140:intron | 30.0% | |
| ATAGAAGACCTCATTCTAAA+TGG | + | chr5_1:63260673-63260692 | Msa0743140:intron | 30.0% | |
| AAGATTGCAATAAGCTAATG+GGG | - | chr5_1:63260880-63260899 | None:intergenic | 30.0% | |
| AAGAAAGATTCCGTTATCAA+TGG | + | chr5_1:63261134-63261153 | Msa0743140:CDS | 30.0% | |
| !! | ATGGTTTTTCACTTGTTAGA+AGG | + | chr5_1:63261216-63261235 | Msa0743140:CDS | 30.0% |
| !! | TTTTTCACTTGTTAGAAGGT+TGG | + | chr5_1:63261220-63261239 | Msa0743140:intron | 30.0% |
| !!! | GTCTCTTGTCTTTTTGAAAT+AGG | + | chr5_1:63261486-63261505 | Msa0743140:intron | 30.0% |
| TTCTATATACAAAGACTCGT+GGG | + | chr5_1:63261612-63261631 | Msa0743140:CDS | 30.0% | |
| TACTAATTACCTCTCACATT+AGG | + | chr5_1:63261784-63261803 | Msa0743140:intron | 30.0% | |
| ! | ATGATGCGCACTTTTAATAT+GGG | + | chr5_1:63261830-63261849 | Msa0743140:CDS | 30.0% |
| AGTACTATTCCTAGCAATAT+AGG | - | chr5_1:63262039-63262058 | None:intergenic | 30.0% | |
| ! | ATATATGAAGAGAGAAGCGT+AGG | - | chr5_1:63258852-63258871 | None:intergenic | 35.0% |
| AGAAAAATGAGTTACCAAGG+GGG | - | chr5_1:63259208-63259227 | None:intergenic | 35.0% | |
| ! | CTCATTTTCATGAGTTCACT+AGG | + | chr5_1:63259320-63259339 | Msa0743140:intron | 35.0% |
| ! | TCTGAAATTTGATGTCAGGA+AGG | - | chr5_1:63259650-63259669 | None:intergenic | 35.0% |
| AAATAAATGATGTGGTAGGG+AGG | - | chr5_1:63259712-63259731 | None:intergenic | 35.0% | |
| CAAACAAGGAAATTACAGAC+GGG | + | chr5_1:63259795-63259814 | Msa0743140:intron | 35.0% | |
| TGGATTTCGATCAAATGTCA+GGG | + | chr5_1:63259823-63259842 | Msa0743140:intron | 35.0% | |
| !!! | TGATTTGACTTGTTTTGCGT+AGG | + | chr5_1:63259896-63259915 | Msa0743140:intron | 35.0% |
| ! | CGTCAATGACATTGTTACTT+CGG | + | chr5_1:63260106-63260125 | Msa0743140:CDS | 35.0% |
| ! | GTCAATGACATTGTTACTTC+GGG | + | chr5_1:63260107-63260126 | Msa0743140:CDS | 35.0% |
| ! | TCAATGACATTGTTACTTCG+GGG | + | chr5_1:63260108-63260127 | Msa0743140:CDS | 35.0% |
| TTCCTAGATTACTTTGCTAC+TGG | + | chr5_1:63260146-63260165 | Msa0743140:CDS | 35.0% | |
| TGCTAGTATCTGATATTGAG+GGG | + | chr5_1:63260489-63260508 | Msa0743140:intron | 35.0% | |
| GGCATAGCATGAAATATATG+CGG | + | chr5_1:63260511-63260530 | Msa0743140:intron | 35.0% | |
| GCATAGCATGAAATATATGC+GGG | + | chr5_1:63260512-63260531 | Msa0743140:intron | 35.0% | |
| GAAATATATGCGGGAAAAGT+TGG | + | chr5_1:63260521-63260540 | Msa0743140:intron | 35.0% | |
| ! | AGTTGGAGGTATACTTATTG+AGG | + | chr5_1:63260538-63260557 | Msa0743140:intron | 35.0% |
| GCATTTAGATAAGCTTGAGT+CGG | + | chr5_1:63260603-63260622 | Msa0743140:intron | 35.0% | |
| CATTTAGATAAGCTTGAGTC+GGG | + | chr5_1:63260604-63260623 | Msa0743140:intron | 35.0% | |
| GACTTGAATAGATCATTGCA+TGG | - | chr5_1:63260720-63260739 | None:intergenic | 35.0% | |
| TCATTGAAAGATAAACTCCC+TGG | + | chr5_1:63261336-63261355 | Msa0743140:CDS | 35.0% | |
| ! | TACAGTTGCAGAAGCTTTAA+TGG | + | chr5_1:63261368-63261387 | Msa0743140:CDS | 35.0% |
| AGACAACTTCAAGATCGAAA+GGG | - | chr5_1:63261470-63261489 | None:intergenic | 35.0% | |
| CTTCTATATACAAAGACTCG+TGG | + | chr5_1:63261611-63261630 | Msa0743140:CDS | 35.0% | |
| ! | AAATGCCTGCAGTTTTCAAA+TGG | + | chr5_1:63261635-63261654 | Msa0743140:CDS | 35.0% |
| ! | GATGATGCGCACTTTTAATA+TGG | + | chr5_1:63261829-63261848 | Msa0743140:CDS | 35.0% |
| ! | GCACTTTTAATATGGGCATT+GGG | + | chr5_1:63261837-63261856 | Msa0743140:CDS | 35.0% |
| !!! | TTTTAATATGGGCATTGGGA+TGG | + | chr5_1:63261841-63261860 | Msa0743140:CDS | 35.0% |
| TGTTCACTACCTATATTGCT+AGG | + | chr5_1:63262027-63262046 | Msa0743140:intron | 35.0% | |
| GTATAGAAAGATCCAACTGA+AGG | + | chr5_1:63262171-63262190 | Msa0743140:three_prime_UTR | 35.0% | |
| TAGTTAGGGTGGAATAGAAG+CGG | - | chr5_1:63258828-63258847 | None:intergenic | 40.0% | |
| ! | AGAGAAGCGTAGGTTAGTTA+GGG | - | chr5_1:63258842-63258861 | None:intergenic | 40.0% |
| GTGATTGTAGCAGTGCATTT+AGG | - | chr5_1:63258963-63258982 | None:intergenic | 40.0% | |
| AGTTTGCGCATTGCAATCAT+CGG | + | chr5_1:63258987-63259006 | Msa0743140:CDS | 40.0% | |
| ! | GTTGCTGTTAGAGCTGAATT+AGG | + | chr5_1:63259074-63259093 | Msa0743140:CDS | 40.0% |
| GTTAGAGCTGAATTAGGTCA+AGG | + | chr5_1:63259080-63259099 | Msa0743140:CDS | 40.0% | |
| AGGTCAAGGTCTTACTTACA+AGG | + | chr5_1:63259094-63259113 | Msa0743140:CDS | 40.0% | |
| TGTTCGAAGAATTGCCAAGA+TGG | + | chr5_1:63259151-63259170 | Msa0743140:CDS | 40.0% | |
| AAGCTATGAATCTCAGCTTG+AGG | - | chr5_1:63259491-63259510 | None:intergenic | 40.0% | |
| ! | TATTTTCCAACATACCCCAG+TGG | + | chr5_1:63259562-63259581 | Msa0743140:intron | 40.0% |
| ! | GTGATTTTCCCAAATGACAG+GGG | - | chr5_1:63259690-63259709 | None:intergenic | 40.0% |
| ! | GGTGATTTTCCCAAATGACA+GGG | - | chr5_1:63259691-63259710 | None:intergenic | 40.0% |
| ! | AGGTGATTTTCCCAAATGAC+AGG | - | chr5_1:63259692-63259711 | None:intergenic | 40.0% |
| CAAGGTTGGAATCTCAAACA+AGG | + | chr5_1:63259781-63259800 | Msa0743140:intron | 40.0% | |
| CTGGATTTCGATCAAATGTC+AGG | + | chr5_1:63259822-63259841 | Msa0743140:intron | 40.0% | |
| GGATTTCGATCAAATGTCAG+GGG | + | chr5_1:63259824-63259843 | Msa0743140:intron | 40.0% | |
| GATTTCGATCAAATGTCAGG+GGG | + | chr5_1:63259825-63259844 | Msa0743140:intron | 40.0% | |
| GTCATGAATGCCAGTTTCAA+AGG | - | chr5_1:63259975-63259994 | None:intergenic | 40.0% | |
| ACTGGCATTCATGACACTAT+TGG | + | chr5_1:63259980-63259999 | Msa0743140:CDS | 40.0% | |
| CTGGCATTCATGACACTATT+GGG | + | chr5_1:63259981-63260000 | Msa0743140:CDS | 40.0% | |
| TGACACTATTGGGATTGATC+TGG | + | chr5_1:63259991-63260010 | Msa0743140:CDS | 40.0% | |
| ! | CAATGACATTGTTACTTCGG+GGG | + | chr5_1:63260109-63260128 | Msa0743140:CDS | 40.0% |
| GACCAGTAGCAAAGTAATCT+AGG | - | chr5_1:63260151-63260170 | None:intergenic | 40.0% | |
| CAATCTGATTGTGCTCTTCT+CGG | + | chr5_1:63260314-63260333 | Msa0743140:CDS | 40.0% | |
| GCTAGTATCTGATATTGAGG+GGG | + | chr5_1:63260490-63260509 | Msa0743140:intron | 40.0% | |
| ATATATGCGGGAAAAGTTGG+AGG | + | chr5_1:63260524-63260543 | Msa0743140:intron | 40.0% | |
| ATGCAGCCTTTGTTCTATTG+TGG | - | chr5_1:63260587-63260606 | None:intergenic | 40.0% | |
| ATGCCTGGTCTATACAAAGA+AGG | + | chr5_1:63261074-63261093 | Msa0743140:CDS | 40.0% | |
| TCACCTTCTTTGTATAGACC+AGG | - | chr5_1:63261080-63261099 | None:intergenic | 40.0% | |
| GAAGGTGAGTATGATCTTAG+CGG | + | chr5_1:63261092-63261111 | Msa0743140:CDS | 40.0% | |
| CAATGGAAAAGACATTACCG+CGG | + | chr5_1:63261151-63261170 | Msa0743140:CDS | 40.0% | |
| AATGGAAAAGACATTACCGC+GGG | + | chr5_1:63261152-63261171 | Msa0743140:CDS | 40.0% | |
| !! | CTTATCGGTTTACCATCAAG+TGG | + | chr5_1:63261182-63261201 | Msa0743140:CDS | 40.0% |
| TTAGAGTGAACTCCACTTGA+TGG | - | chr5_1:63261197-63261216 | None:intergenic | 40.0% | |
| TCAAGTGGAGTTCACTCTAA+TGG | + | chr5_1:63261197-63261216 | Msa0743140:CDS | 40.0% | |
| ! | GGTAGAGTACTTGAGAAAAG+CGG | + | chr5_1:63261309-63261328 | Msa0743140:intron | 40.0% |
| GACAACTTCAAGATCGAAAG+GGG | - | chr5_1:63261469-63261488 | None:intergenic | 40.0% | |
| GAGACAACTTCAAGATCGAA+AGG | - | chr5_1:63261471-63261490 | None:intergenic | 40.0% | |
| TTGACATAGTCAGCAAAGGA+GGG | + | chr5_1:63261512-63261531 | Msa0743140:CDS | 40.0% | |
| AAGGGAATTGCCCATATTAC+TGG | + | chr5_1:63261538-63261557 | Msa0743140:CDS | 40.0% | |
| ! | ATTCCTCGAGTTTTTCCAGA+AGG | + | chr5_1:63261580-63261599 | Msa0743140:CDS | 40.0% |
| ! | AAACCTTCTGGAAAAACTCG+AGG | - | chr5_1:63261586-63261605 | None:intergenic | 40.0% |
| ! | CGAGTTTTTCCAGAAGGTTT+TGG | + | chr5_1:63261586-63261605 | Msa0743140:CDS | 40.0% |
| !! | ATAGAAGCACCAAAACCTTC+TGG | - | chr5_1:63261598-63261617 | None:intergenic | 40.0% |
| TGAAGCCATTTGAAAACTGC+AGG | - | chr5_1:63261643-63261662 | None:intergenic | 40.0% | |
| ! | AGTTTTCAAATGGCTTCAGC+AGG | + | chr5_1:63261645-63261664 | Msa0743140:CDS | 40.0% |
| AATTACCTCTCACATTAGGC+TGG | + | chr5_1:63261788-63261807 | Msa0743140:intron | 40.0% | |
| ATTACCTCTCACATTAGGCT+GGG | + | chr5_1:63261789-63261808 | Msa0743140:intron | 40.0% | |
| ! | CGCACTTTTAATATGGGCAT+TGG | + | chr5_1:63261836-63261855 | Msa0743140:CDS | 40.0% |
| AGTATTCTATTAGCTGCCTC+TGG | - | chr5_1:63261881-63261900 | None:intergenic | 40.0% | |
| AATAACTTCACCTATGCGGT+AGG | - | chr5_1:63261930-63261949 | None:intergenic | 40.0% | |
| CGCTAATAACTTCACCTATG+CGG | - | chr5_1:63261934-63261953 | None:intergenic | 40.0% | |
| CGCATAGGTGAAGTTATTAG+CGG | + | chr5_1:63261932-63261951 | Msa0743140:CDS | 40.0% | |
| AGGTGAAGTTATTAGCGGAA+AGG | + | chr5_1:63261937-63261956 | Msa0743140:CDS | 40.0% | |
| GGTGAAGTTATTAGCGGAAA+GGG | + | chr5_1:63261938-63261957 | Msa0743140:CDS | 40.0% | |
| GAAAGAAGAAGGAAACGCGA+TGG | - | chr5_1:63258722-63258741 | None:intergenic | 45.0% | |
| ! | GAGAGAAGCGTAGGTTAGTT+AGG | - | chr5_1:63258843-63258862 | None:intergenic | 45.0% |
| AGGTTTAACTGATGCAGCTG+CGG | - | chr5_1:63258943-63258962 | None:intergenic | 45.0% | |
| GATTGCAATGCGCAAACTGT+GGG | - | chr5_1:63258985-63259004 | None:intergenic | 45.0% | |
| TGATTGCAATGCGCAAACTG+TGG | - | chr5_1:63258986-63259005 | None:intergenic | 45.0% | |
| GGTCTTACTTACAAGGACTC+CGG | + | chr5_1:63259101-63259120 | Msa0743140:CDS | 45.0% | |
| TCTCAGCTTGAGGTCTTGAT+AGG | - | chr5_1:63259481-63259500 | None:intergenic | 45.0% | |
| ! | ATTTTTACAGTGGGCCACTG+GGG | - | chr5_1:63259579-63259598 | None:intergenic | 45.0% |
| ! | CATTTTTACAGTGGGCCACT+GGG | - | chr5_1:63259580-63259599 | None:intergenic | 45.0% |
| ! | ACATTTTTACAGTGGGCCAC+TGG | - | chr5_1:63259581-63259600 | None:intergenic | 45.0% |
| ! | TACTTTTGGCCCCTGTCATT+TGG | + | chr5_1:63259678-63259697 | Msa0743140:intron | 45.0% |
| !! | ACTTTTGGCCCCTGTCATTT+GGG | + | chr5_1:63259679-63259698 | Msa0743140:intron | 45.0% |
| GAAATTACAGACGGGCAAAC+TGG | + | chr5_1:63259803-63259822 | Msa0743140:intron | 45.0% | |
| GGTGATTCATATCTCGTTGC+TGG | + | chr5_1:63259917-63259936 | Msa0743140:intron | 45.0% | |
| ! | TATCTCGTTGCTGGTACTGA+TGG | + | chr5_1:63259926-63259945 | Msa0743140:CDS | 45.0% |
| !! | TTGCTGGTACTGATGGTGTT+GGG | + | chr5_1:63259933-63259952 | Msa0743140:CDS | 45.0% |
| !! | GTGATGCTTGCCTTTGAAAC+TGG | + | chr5_1:63259962-63259981 | Msa0743140:CDS | 45.0% |
| !! | GTAATGGATGTGCTTCTAGC+TGG | + | chr5_1:63260197-63260216 | Msa0743140:intron | 45.0% |
| GTTGGCAAGAATAGACGAGA+CGG | - | chr5_1:63260389-63260408 | None:intergenic | 45.0% | |
| AGTTGTGCGTGTGTGAGAAA+AGG | - | chr5_1:63260970-63260989 | None:intergenic | 45.0% | |
| GTATGATCTTAGCGGTTGTG+CGG | + | chr5_1:63261100-63261119 | Msa0743140:CDS | 45.0% | |
| GTGCTTGACATAGTCAGCAA+AGG | + | chr5_1:63261508-63261527 | Msa0743140:CDS | 45.0% | |
| CTTGACATAGTCAGCAAAGG+AGG | + | chr5_1:63261511-63261530 | Msa0743140:CDS | 45.0% | |
| TGACATAGTCAGCAAAGGAG+GGG | + | chr5_1:63261513-63261532 | Msa0743140:CDS | 45.0% | |
| GGAATTGCCCATATTACTGG+TGG | + | chr5_1:63261541-63261560 | Msa0743140:CDS | 45.0% | |
| ATTGCCCATATTACTGGTGG+CGG | + | chr5_1:63261544-63261563 | Msa0743140:CDS | 45.0% | |
| GAAACCGCCACCAGTAATAT+GGG | - | chr5_1:63261551-63261570 | None:intergenic | 45.0% | |
| TGAAACCGCCACCAGTAATA+TGG | - | chr5_1:63261552-63261571 | None:intergenic | 45.0% | |
| GAAGAAGGAAACGCGATGGT+GGG | - | chr5_1:63258718-63258737 | None:intergenic | 50.0% | |
| AGAAGAAGGAAACGCGATGG+TGG | - | chr5_1:63258719-63258738 | None:intergenic | 50.0% | |
| GTGCGTGTTCGGAAAGAAGA+AGG | - | chr5_1:63258733-63258752 | None:intergenic | 50.0% | |
| ACCTGAGAGAGAAGAGACGA+CGG | - | chr5_1:63258792-63258811 | None:intergenic | 50.0% | |
| ! | GAAGCGTAGGTTAGTTAGGG+TGG | - | chr5_1:63258839-63258858 | None:intergenic | 50.0% |
| GGTTTAACTGATGCAGCTGC+GGG | - | chr5_1:63258942-63258961 | None:intergenic | 50.0% | |
| TTGCGCATTGCAATCATCGG+CGG | + | chr5_1:63258990-63259009 | Msa0743140:CDS | 50.0% | |
| ACCAGCGTCAATGTCAACTC+CGG | - | chr5_1:63259123-63259142 | None:intergenic | 50.0% | |
| AGAATTGCCAAGATGGCTCC+CGG | + | chr5_1:63259158-63259177 | Msa0743140:CDS | 50.0% | |
| TTCGGTGGTTTATTCCCCCT+TGG | + | chr5_1:63259191-63259210 | Msa0743140:CDS | 50.0% | |
| !! | GTTGCTGGTACTGATGGTGT+TGG | + | chr5_1:63259932-63259951 | Msa0743140:CDS | 50.0% |
| ! | TACTGATGGTGTTGGGACGA+AGG | + | chr5_1:63259940-63259959 | Msa0743140:CDS | 50.0% |
| TGCTACTGGTCACCTTGATG+TGG | + | chr5_1:63260160-63260179 | Msa0743140:CDS | 50.0% | |
| GCTACTGGTCACCTTGATGT+GGG | + | chr5_1:63260161-63260180 | Msa0743140:CDS | 50.0% | |
| GTTCAGCAACACCCACATCA+AGG | - | chr5_1:63260175-63260194 | None:intergenic | 50.0% | |
| !! | TGATGTGGGTGTTGCTGAAC+AGG | + | chr5_1:63260175-63260194 | Msa0743140:CDS | 50.0% |
| !! | GGGTGTTGCTGAACAGGTAA+TGG | + | chr5_1:63260181-63260200 | Msa0743140:intron | 50.0% |
| ! | GGATGTGCTTCTAGCTGGTT+TGG | + | chr5_1:63260202-63260221 | Msa0743140:intron | 50.0% |
| TCTGATTGTGCTCTTCTCGG+AGG | + | chr5_1:63260317-63260336 | Msa0743140:CDS | 50.0% | |
| GACGAGACGGCAAATCCAAT+TGG | - | chr5_1:63260376-63260395 | None:intergenic | 50.0% | |
| GATAAGCTTGAGTCGGGTAG+AGG | + | chr5_1:63260610-63260629 | Msa0743140:intron | 50.0% | |
| TTTCAGACTGCAGAGATGCC+TGG | + | chr5_1:63261059-63261078 | Msa0743140:intron | 50.0% | |
| ATCTTAGCGGTTGTGCGGTT+GGG | + | chr5_1:63261105-63261124 | Msa0743140:CDS | 50.0% | |
| AGTCAGCAAAGGAGGGGTAA+AGG | + | chr5_1:63261519-63261538 | Msa0743140:CDS | 50.0% | |
| GTCAGCAAAGGAGGGGTAAA+GGG | + | chr5_1:63261520-63261539 | Msa0743140:CDS | 50.0% | |
| TCTTCCCAGCCTAATGTGAG+AGG | - | chr5_1:63261796-63261815 | None:intergenic | 50.0% | |
| ACAGAGAAAGCCTACCGCAT+AGG | + | chr5_1:63261917-63261936 | Msa0743140:CDS | 50.0% | |
| TCGGATGGAATGCCTTCAGT+TGG | - | chr5_1:63262186-63262205 | None:intergenic | 50.0% | |
| GAGAGAGAAGAGACGACGGT+CGG | - | chr5_1:63258788-63258807 | None:intergenic | 55.0% | |
| ACCGTCGTCTCTTCTCTCTC+AGG | + | chr5_1:63258788-63258807 | Msa0743140:five_prime_UTR | 55.0% | |
| GTGGAATAGAAGCGGCAACG+GGG | - | chr5_1:63258820-63258839 | None:intergenic | 55.0% | |
| GGTGGAATAGAAGCGGCAAC+GGG | - | chr5_1:63258821-63258840 | None:intergenic | 55.0% | |
| GGGTGGAATAGAAGCGGCAA+CGG | - | chr5_1:63258822-63258841 | None:intergenic | 55.0% | |
| TCCGGAGTTGACATTGACGC+TGG | + | chr5_1:63259119-63259138 | Msa0743140:CDS | 55.0% | |
| GAATTGCCAAGATGGCTCCC+GGG | + | chr5_1:63259159-63259178 | Msa0743140:CDS | 55.0% | |
| TTGTGCTCTTCTCGGAGGAG+AGG | + | chr5_1:63260322-63260341 | Msa0743140:CDS | 55.0% | |
| GATCTTAGCGGTTGTGCGGT+TGG | + | chr5_1:63261104-63261123 | Msa0743140:CDS | 55.0% | |
| ACCGCGGGCGACATTCTTAT+CGG | + | chr5_1:63261167-63261186 | Msa0743140:CDS | 55.0% | |
| ACCGATAAGAATGTCGCCCG+CGG | - | chr5_1:63261171-63261190 | None:intergenic | 55.0% | |
| CAACTGTAGTGCTAGCGCCA+GGG | - | chr5_1:63261356-63261375 | None:intergenic | 55.0% | |
| GGTCCTTGTAGTCACTCCAG+AGG | + | chr5_1:63261862-63261881 | Msa0743140:CDS | 55.0% | |
| !! | CTGCCTCTGGAGTGACTACA+AGG | - | chr5_1:63261868-63261887 | None:intergenic | 55.0% |
| GGTAGGTCTGCTACATCGGA+TGG | - | chr5_1:63262201-63262220 | None:intergenic | 55.0% | |
| GAAGAGACGACGGTCGGTGA+CGG | - | chr5_1:63258782-63258801 | None:intergenic | 60.0% | |
| ACCAATCCCGGGAGCCATCT+TGG | - | chr5_1:63259168-63259187 | None:intergenic | 60.0% | |
| AAGATGGCTCCCGGGATTGG+TGG | + | chr5_1:63259167-63259186 | Msa0743140:CDS | 60.0% | |
| ACCACCGAAGCCACCAATCC+CGG | - | chr5_1:63259180-63259199 | None:intergenic | 60.0% | |
| AGTGGGCCACTGGGGTATGT+TGG | - | chr5_1:63259571-63259590 | None:intergenic | 60.0% | |
| GCAACTGTAGTGCTAGCGCC+AGG | - | chr5_1:63261357-63261376 | None:intergenic | 60.0% | |
| GCCAAGATGGCTCCCGGGAT+TGG | + | chr5_1:63259164-63259183 | Msa0743140:CDS | 65.0% | |
| ! | GCTCCCGGGATTGGTGGCTT+CGG | + | chr5_1:63259173-63259192 | Msa0743140:CDS | 65.0% |
| CCACCGAAGCCACCAATCCC+GGG | - | chr5_1:63259179-63259198 | None:intergenic | 65.0% | |
| GCTGCGCGTGCGTGCGTGTT+CGG | - | chr5_1:63258744-63258763 | None:intergenic | 70.0% | |
| !! | GGTCGGTGACGGTGGCGGAA+AGG | - | chr5_1:63258771-63258790 | None:intergenic | 70.0% |
| ! | ACGACGGTCGGTGACGGTGG+CGG | - | chr5_1:63258776-63258795 | None:intergenic | 70.0% |
| ! | GAGACGACGGTCGGTGACGG+TGG | - | chr5_1:63258779-63258798 | None:intergenic | 70.0% |
| ! | CCCGGGATTGGTGGCTTCGG+TGG | + | chr5_1:63259176-63259195 | Msa0743140:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 63258707 | 63262221 | 63258707 | ID=Msa0743140;Name=Msa0743140 |
| chr5_1 | mRNA | 63258707 | 63262221 | 63258707 | ID=Msa0743140-mRNA-1;Parent=Msa0743140;Name=Msa0743140-mRNA-1;_AED=0.10;_eAED=0.10;_QI=166|1|1|1|0.77|0.6|10|219|390 |
| chr5_1 | exon | 63258707 | 63258809 | 63258707 | ID=Msa0743140-mRNA-1:exon:18625;Parent=Msa0743140-mRNA-1 |
| chr5_1 | exon | 63258840 | 63259212 | 63258840 | ID=Msa0743140-mRNA-1:exon:18626;Parent=Msa0743140-mRNA-1 |
| chr5_1 | exon | 63259918 | 63260012 | 63259918 | ID=Msa0743140-mRNA-1:exon:18627;Parent=Msa0743140-mRNA-1 |
| chr5_1 | exon | 63260095 | 63260196 | 63260095 | ID=Msa0743140-mRNA-1:exon:18628;Parent=Msa0743140-mRNA-1 |
| chr5_1 | exon | 63260284 | 63260343 | 63260284 | ID=Msa0743140-mRNA-1:exon:18629;Parent=Msa0743140-mRNA-1 |
| chr5_1 | exon | 63261065 | 63261237 | 63261065 | ID=Msa0743140-mRNA-1:exon:18630;Parent=Msa0743140-mRNA-1 |
| chr5_1 | exon | 63261314 | 63261416 | 63261314 | ID=Msa0743140-mRNA-1:exon:18631;Parent=Msa0743140-mRNA-1 |
| chr5_1 | exon | 63261508 | 63261666 | 63261508 | ID=Msa0743140-mRNA-1:exon:18632;Parent=Msa0743140-mRNA-1 |
| chr5_1 | exon | 63261806 | 63262028 | 63261806 | ID=Msa0743140-mRNA-1:exon:18633;Parent=Msa0743140-mRNA-1 |
| chr5_1 | exon | 63262055 | 63262221 | 63262055 | ID=Msa0743140-mRNA-1:exon:18634;Parent=Msa0743140-mRNA-1 |
| chr5_1 | five_prime_UTR | 63258707 | 63258809 | 63258707 | ID=Msa0743140-mRNA-1:five_prime_utr;Parent=Msa0743140-mRNA-1 |
| chr5_1 | five_prime_UTR | 63258840 | 63258902 | 63258840 | ID=Msa0743140-mRNA-1:five_prime_utr;Parent=Msa0743140-mRNA-1 |
| chr5_1 | CDS | 63258903 | 63259212 | 63258903 | ID=Msa0743140-mRNA-1:cds;Parent=Msa0743140-mRNA-1 |
| chr5_1 | CDS | 63259918 | 63260012 | 63259918 | ID=Msa0743140-mRNA-1:cds;Parent=Msa0743140-mRNA-1 |
| chr5_1 | CDS | 63260095 | 63260196 | 63260095 | ID=Msa0743140-mRNA-1:cds;Parent=Msa0743140-mRNA-1 |
| chr5_1 | CDS | 63260284 | 63260343 | 63260284 | ID=Msa0743140-mRNA-1:cds;Parent=Msa0743140-mRNA-1 |
| chr5_1 | CDS | 63261065 | 63261237 | 63261065 | ID=Msa0743140-mRNA-1:cds;Parent=Msa0743140-mRNA-1 |
| chr5_1 | CDS | 63261314 | 63261416 | 63261314 | ID=Msa0743140-mRNA-1:cds;Parent=Msa0743140-mRNA-1 |
| chr5_1 | CDS | 63261508 | 63261666 | 63261508 | ID=Msa0743140-mRNA-1:cds;Parent=Msa0743140-mRNA-1 |
| chr5_1 | CDS | 63261806 | 63261976 | 63261806 | ID=Msa0743140-mRNA-1:cds;Parent=Msa0743140-mRNA-1 |
| chr5_1 | three_prime_UTR | 63261977 | 63262028 | 63261977 | ID=Msa0743140-mRNA-1:three_prime_utr;Parent=Msa0743140-mRNA-1 |
| chr5_1 | three_prime_UTR | 63262055 | 63262221 | 63262055 | ID=Msa0743140-mRNA-1:three_prime_utr;Parent=Msa0743140-mRNA-1 |
| Gene Sequence |
| Protein sequence |
