Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0863290 | XP_003630286.1 | 92.911 | 395 | 18 | 4 | 1 | 390 | 1 | 390 | 0.0 | 694 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0863290 | sp|P52424|PUR5_VIGUN | 77.468 | 395 | 75 | 4 | 1 | 389 | 1 | 387 | 0.0 | 610 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0863290 | B7FJ14 | 92.911 | 395 | 18 | 4 | 1 | 390 | 1 | 390 | 0.0 | 694 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0610380 | Msa0863290 | 0.810161 | 1.322810e-50 | -8.615850e-47 |
| Msa0650910 | Msa0863290 | 0.802977 | 4.342765e-49 | -8.615850e-47 |
| Msa0743140 | Msa0863290 | 0.819802 | 9.591923e-53 | -8.615850e-47 |
| Msa0759660 | Msa0863290 | 0.817375 | 3.407140e-52 | -8.615850e-47 |
| Msa0780180 | Msa0863290 | 0.826446 | 2.701523e-54 | -8.615850e-47 |
| Msa0578010 | Msa0863290 | 0.822225 | 2.654287e-53 | -8.615850e-47 |
| Msa0863290 | Msa0930360 | 0.831573 | 1.546400e-55 | -8.615850e-47 |
| Msa0863290 | Msa1363930 | 0.801151 | 1.030999e-48 | -8.615850e-47 |
| Msa0863290 | Msa1465890 | 0.806599 | 7.606803e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0863290 | MtrunA17_Chr8g0384411 | 92.911 | 395 | 18 | 4 | 1 | 390 | 1 | 390 | 0.0 | 694 |
| Msa0863290 | MtrunA17_Chr5g0444911 | 91.228 | 114 | 10 | 0 | 277 | 390 | 40 | 153 | 1.62e-70 | 218 |
| Msa0863290 | MtrunA17_Chr5g0444901 | 74.242 | 66 | 9 | 2 | 43 | 108 | 1 | 58 | 5.20e-22 | 88.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0863290 | AT3G55010.2 | 71.129 | 381 | 95 | 4 | 10 | 389 | 22 | 388 | 0.0 | 518 |
| Msa0863290 | AT3G55010.1 | 71.129 | 381 | 95 | 4 | 10 | 389 | 22 | 388 | 0.0 | 518 |
Find 115 sgRNAs with CRISPR-Local
Find 249 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACAGTTGCAGAAGCTTTAA+TGG | 0.186823 | 5_4:+63072935 | Msa0863290:CDS |
| TCTCTTCTTCAGGTTATAAA+AGG | 0.219818 | 5_4:+63071838 | Msa0863290:intron |
| TGAAACCGCCACCAGTAATA+TGG | 0.229484 | 5_4:-63073116 | None:intergenic |
| ATGCATTATATTCATATCTT+TGG | 0.241957 | 5_4:+63073679 | Msa0863290:three_prime_UTR |
| GAGAGAAGCGTAGGCTAGTT+AGG | 0.243837 | 5_4:-63070406 | None:intergenic |
| GTTGCTGTTAAAGCTGAATT+AGG | 0.262432 | 5_4:+63070640 | Msa0863290:CDS |
| GTGATTGTAGCGGTGCCTTT+AGG | 0.290401 | 5_4:-63070526 | None:intergenic |
| CTGGCATTCATGACACTATT+GGG | 0.307297 | 5_4:+63071547 | Msa0863290:CDS |
| GTCAATGACATTGTTACTTC+GGG | 0.311408 | 5_4:+63071673 | Msa0863290:CDS |
| ATAGAAGCACCAAAACCTTC+TGG | 0.347224 | 5_4:-63073162 | None:intergenic |
| ACTGGCATTCATGACACTAT+TGG | 0.351495 | 5_4:+63071546 | Msa0863290:CDS |
| TGTTTAACATAGATCTTAGT+TGG | 0.359529 | 5_4:-63072960 | None:intergenic |
| GTGATGCTTGCCTTTGAAAC+TGG | 0.364727 | 5_4:+63071528 | Msa0863290:CDS |
| AAGGGAATTGCCCATATTAC+TGG | 0.366271 | 5_4:+63073105 | Msa0863290:CDS |
| ACCAATCCCGGGAGCCATCT+TGG | 0.375081 | 5_4:-63070731 | None:intergenic |
| GTTATAAAAGGAATTGTTGA+TGG | 0.376433 | 5_4:+63071850 | Msa0863290:CDS |
| AACTAAGATCTATGTTAAAC+AGG | 0.388871 | 5_4:+63072962 | Msa0863290:CDS |
| GTTTAGCTTGTTTATAACTT+TGG | 0.389752 | 5_4:+63073518 | Msa0863290:exon |
| TCAAGTGGAGTTCACTCTAA+TGG | 0.393600 | 5_4:+63072764 | Msa0863290:CDS |
| TTAGAGTGAACTCCACTTGA+TGG | 0.400231 | 5_4:-63072761 | None:intergenic |
| TTCAACAAAGCAATGAGTTT+CGG | 0.405513 | 5_4:+63070457 | Msa0863290:exon |
| GCTGCGCGTGCGTGCGTGTT+CGG | 0.410852 | 5_4:-63070307 | None:intergenic |
| GCTCCCGGGATTGGTGGCTT+CGG | 0.417133 | 5_4:+63070739 | Msa0863290:CDS |
| ACCGCGGGCGACATTCTTAT+CGG | 0.417757 | 5_4:+63072734 | Msa0863290:CDS |
| GGTGATTCATATCTCGTTGC+TGG | 0.425062 | 5_4:+63071483 | Msa0863290:intron |
| CAATCTGATTGTGCTCTTCT+CGG | 0.426140 | 5_4:+63071880 | Msa0863290:CDS |
| ATCTTAGTGGTTGTGCGGTT+GGG | 0.428572 | 5_4:+63072672 | Msa0863290:CDS |
| TGATGTGGATGTTGCTGAAC+AGG | 0.430758 | 5_4:+63071741 | Msa0863290:CDS |
| TTCCTAGATTACTTTGCTAC+TGG | 0.434841 | 5_4:+63071712 | Msa0863290:CDS |
| CCCGGGATTGGTGGCTTCGG+TGG | 0.435733 | 5_4:+63070742 | Msa0863290:CDS |
| AGTATTCTATTAGCTGCCTC+TGG | 0.440480 | 5_4:-63073420 | None:intergenic |
| ACCACCGAAGCCACCAATCC+CGG | 0.448332 | 5_4:-63070743 | None:intergenic |
| GCCAAGATGGCTCCCGGGAT+TGG | 0.453678 | 5_4:+63070730 | Msa0863290:CDS |
| GATCTTAGTGGTTGTGCGGT+TGG | 0.461826 | 5_4:+63072671 | Msa0863290:CDS |
| GACCAGTAGCAAAGTAATCT+AGG | 0.464226 | 5_4:-63071714 | None:intergenic |
| GCAACTGTAGTGCTAGCGCC+AGG | 0.466715 | 5_4:-63072921 | None:intergenic |
| TCATACATTAGAAATCTAGA+AGG | 0.469537 | 5_4:-63073608 | None:intergenic |
| CGTCAATGACATTGTTACTT+CGG | 0.471639 | 5_4:+63071672 | Msa0863290:CDS |
| GTCAGCAAAGGAGGGGTAAA+GGG | 0.471923 | 5_4:+63073087 | Msa0863290:CDS |
| AAGAAAGATTCCGTTATCAA+TGG | 0.474326 | 5_4:+63072701 | Msa0863290:CDS |
| AGTCAGCAAAGGAGGGGTAA+AGG | 0.475808 | 5_4:+63073086 | Msa0863290:CDS |
| TGACACTATTGGGATTGATC+TGG | 0.476022 | 5_4:+63071557 | Msa0863290:CDS |
| GGCCGGTGACGGTGGTGGCA+AGG | 0.476945 | 5_4:-63070334 | None:intergenic |
| TTTCAGACTGCAGAGATGCC+TGG | 0.478402 | 5_4:+63072626 | Msa0863290:intron |
| AAGATGGCTCCCGGGATTGG+TGG | 0.498402 | 5_4:+63070733 | Msa0863290:CDS |
| GAAACCGCCACCAGTAATAT+GGG | 0.506817 | 5_4:-63073115 | None:intergenic |
| GGTGAAGTTATTAGCGGAAA+GGG | 0.508573 | 5_4:+63073480 | Msa0863290:CDS |
| AGAATTGCCAAGATGGCTCC+CGG | 0.510784 | 5_4:+63070724 | Msa0863290:CDS |
| CCACCGAAGCCACCAATCCC+GGG | 0.518062 | 5_4:-63070742 | None:intergenic |
| TTGCTGGTACTGATGGTGTT+GGG | 0.519574 | 5_4:+63071499 | Msa0863290:CDS |
| CTGCCTCTGGAGTGACTACA+AGG | 0.520084 | 5_4:-63073407 | None:intergenic |
| GAAGGTGAGTATGATCTTAG+TGG | 0.521805 | 5_4:+63072659 | Msa0863290:CDS |
| AGGTCAAGGTCTTACTTACA+AGG | 0.523785 | 5_4:+63070660 | Msa0863290:CDS |
| ACGACGGCCGGTGACGGTGG+TGG | 0.523878 | 5_4:-63070339 | None:intergenic |
| TGTTCGAAGAATTGCCAAGA+TGG | 0.524535 | 5_4:+63070717 | Msa0863290:CDS |
| AGAGAAGCGTAGGCTAGTTA+GGG | 0.524744 | 5_4:-63070405 | None:intergenic |
| GTCATGAATGCCAGTTTCAA+AGG | 0.530046 | 5_4:-63071538 | None:intergenic |
| TGCTACTGGTCACCTTGATG+TGG | 0.532410 | 5_4:+63071726 | Msa0863290:CDS |
| TGAAGCCATTTGAAAACTGC+AGG | 0.535533 | 5_4:-63073207 | None:intergenic |
| GGCTAGTTAGGGTGGAATAG+AGG | 0.538256 | 5_4:-63070394 | None:intergenic |
| TATCTCGTTGCTGGTACTGA+TGG | 0.539782 | 5_4:+63071492 | Msa0863290:CDS |
| TCATTGAAAGATAAACTCCC+TGG | 0.543700 | 5_4:+63072903 | Msa0863290:CDS |
| CTCATTGCTTTGTTGAAGAG+TGG | 0.544241 | 5_4:-63070451 | None:intergenic |
| GTGCGTGTTCGGAAAGAAGA+AGG | 0.545066 | 5_4:-63070296 | None:intergenic |
| GTTGCTGGTACTGATGGTGT+TGG | 0.546250 | 5_4:+63071498 | Msa0863290:CDS |
| GTTGCATCAGTTAAACCTAA+AGG | 0.547245 | 5_4:+63070511 | Msa0863290:CDS |
| ATTGCCCATATTACTGGTGG+CGG | 0.548526 | 5_4:+63073111 | Msa0863290:CDS |
| GGAGGGTAGGTCTGCTACAT+CGG | 0.552709 | 5_4:-63073744 | None:intergenic |
| CGCATAGGTGAAGTTATTAG+CGG | 0.554142 | 5_4:+63073474 | Msa0863290:CDS |
| TCGGATGGAATGCCTTCAGT+TGG | 0.558835 | 5_4:-63073725 | None:intergenic |
| GGTAGGTCTGCTACATCGGA+TGG | 0.562809 | 5_4:-63073740 | None:intergenic |
| GTTAAAGCTGAATTAGGTCA+AGG | 0.574891 | 5_4:+63070646 | Msa0863290:CDS |
| AGAAGAAGGAAACGCGATGG+TGG | 0.581291 | 5_4:-63070282 | None:intergenic |
| CGATTGCAATGCGCAAAATG+TGG | 0.583088 | 5_4:-63070549 | None:intergenic |
| TTCTATATACAAAGACTCGT+GGG | 0.583148 | 5_4:+63073179 | Msa0863290:CDS |
| AGGTGAAGTTATTAGCGGAA+AGG | 0.587730 | 5_4:+63073479 | Msa0863290:CDS |
| ATGCCTGGTCTATACAAAGA+AGG | 0.589062 | 5_4:+63072641 | Msa0863290:CDS |
| GAATTGCCAAGATGGCTCCC+GGG | 0.589431 | 5_4:+63070725 | Msa0863290:CDS |
| CGCTAATAACTTCACCTATG+CGG | 0.589870 | 5_4:-63073473 | None:intergenic |
| ATTGCTTTGTTGAAGAGTGG+TGG | 0.591635 | 5_4:-63070448 | None:intergenic |
| GTTCAGCAACATCCACATCA+AGG | 0.596378 | 5_4:-63071738 | None:intergenic |
| CTTATCGGTTTACCATCAAG+TGG | 0.597195 | 5_4:+63072749 | Msa0863290:CDS |
| CTTCTATATACAAAGACTCG+TGG | 0.598028 | 5_4:+63073178 | Msa0863290:CDS |
| GAAGAAGGAAACGCGATGGT+GGG | 0.598740 | 5_4:-63070281 | None:intergenic |
| CAATGACATTGTTACTTCGG+GGG | 0.601621 | 5_4:+63071675 | Msa0863290:CDS |
| ATATATGAAGAGAGAAGCGT+AGG | 0.601887 | 5_4:-63070415 | None:intergenic |
| GAAGCGTAGGCTAGTTAGGG+TGG | 0.602343 | 5_4:-63070402 | None:intergenic |
| ACAGAGAAAGCCTACCGCAT+AGG | 0.605304 | 5_4:+63073459 | Msa0863290:CDS |
| TCACCTTCTTTGTATAGACC+AGG | 0.605966 | 5_4:-63072644 | None:intergenic |
| ACCAGCGTCAATGTCAACTC+CGG | 0.611044 | 5_4:-63070686 | None:intergenic |
| TTTGTTGAAGAGTGGTGGAA+TGG | 0.613070 | 5_4:-63070443 | None:intergenic |
| GTATAGAAAGATCCAACTGA+AGG | 0.614636 | 5_4:+63073713 | Msa0863290:three_prime_UTR |
| TCCGGAGTTGACATTGACGC+TGG | 0.615130 | 5_4:+63070685 | Msa0863290:CDS |
| AATAACTTCACCTATGCGGT+AGG | 0.617101 | 5_4:-63073469 | None:intergenic |
| CAACTGTAGTGCTAGCGCCA+GGG | 0.619110 | 5_4:-63072920 | None:intergenic |
| TTGACATAGTCAGCAAAGGA+GGG | 0.619945 | 5_4:+63073079 | Msa0863290:CDS |
| CTTGACATAGTCAGCAAAGG+AGG | 0.620172 | 5_4:+63073078 | Msa0863290:CDS |
| TTGTGCTCTTCTCGGAGGAG+AGG | 0.621414 | 5_4:+63071888 | Msa0863290:CDS |
| GATTGCAATGCGCAAAATGT+GGG | 0.626408 | 5_4:-63070548 | None:intergenic |
| TCAATGACATTGTTACTTCG+GGG | 0.633382 | 5_4:+63071674 | Msa0863290:CDS |
| GGTAGAGTACTTGAGAAAAG+CGG | 0.636828 | 5_4:+63072876 | Msa0863290:intron |
| TGACATAGTCAGCAAAGGAG+GGG | 0.637780 | 5_4:+63073080 | Msa0863290:CDS |
| AATGGAAAAGACATTACCGC+GGG | 0.638544 | 5_4:+63072719 | Msa0863290:CDS |
| GTGCTTGACATAGTCAGCAA+AGG | 0.639899 | 5_4:+63073075 | Msa0863290:CDS |
| GGTCTTACTTACAAGGACTC+CGG | 0.645432 | 5_4:+63070667 | Msa0863290:CDS |
| TACTGATGGTGTTGGGACGA+AGG | 0.646206 | 5_4:+63071506 | Msa0863290:CDS |
| CAAAATGTGGGTGATTGTAG+CGG | 0.661076 | 5_4:-63070536 | None:intergenic |
| GGAATTGCCCATATTACTGG+TGG | 0.664696 | 5_4:+63073108 | Msa0863290:CDS |
| TCTGATTGTGCTCTTCTCGG+AGG | 0.665825 | 5_4:+63071883 | Msa0863290:CDS |
| TAGTTAGGGTGGAATAGAGG+CGG | 0.672414 | 5_4:-63070391 | None:intergenic |
| GAAAGAAGAAGGAAACGCGA+TGG | 0.679295 | 5_4:-63070285 | None:intergenic |
| ACCGATAAGAATGTCGCCCG+CGG | 0.680506 | 5_4:-63072735 | None:intergenic |
| GGTCCTTGTAGTCACTCCAG+AGG | 0.685578 | 5_4:+63073404 | Msa0863290:CDS |
| GTATGATCTTAGTGGTTGTG+CGG | 0.694362 | 5_4:+63072667 | Msa0863290:CDS |
| CAATGGAAAAGACATTACCG+CGG | 0.734778 | 5_4:+63072718 | Msa0863290:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTATATTTTATAAAATTAT+TGG | + | chr5_4:63072827-63072846 | Msa0863290:intron | 0.0% |
| !!! | TGAAATATATCAATATATTT+TGG | + | chr5_4:63072855-63072874 | Msa0863290:intron | 10.0% |
| !! | AAAAGAATCTTTAAATTACA+AGG | - | chr5_4:63071185-63071204 | None:intergenic | 15.0% |
| !!! | ATAATGCATTAAAATTTTGA+GGG | - | chr5_4:63073668-63073687 | None:intergenic | 15.0% |
| !!! | TATAATGCATTAAAATTTTG+AGG | - | chr5_4:63073669-63073688 | None:intergenic | 15.0% |
| !! | ACATCAAATTTCAGAATTAA+AGG | + | chr5_4:63071221-63071240 | Msa0863290:intron | 20.0% |
| !! | CAAAGAATCTTTAAATTACA+AGG | + | chr5_4:63071329-63071348 | Msa0863290:intron | 20.0% |
| !!! | TTTGTTTAGTTCCTTTTTAT+TGG | + | chr5_4:63071435-63071454 | Msa0863290:intron | 20.0% |
| !! | CAAATCAATATCCAATAAAA+AGG | - | chr5_4:63071449-63071468 | None:intergenic | 20.0% |
| !! | AAGTAATCTAGGAAAAATAA+AGG | - | chr5_4:63071706-63071725 | None:intergenic | 20.0% |
| !!! | TAAATGGTTTTATTGGAATT+TGG | + | chr5_4:63072256-63072275 | Msa0863290:intron | 20.0% |
| !! | TGTTTGAATAAAATGTCAAT+AGG | - | chr5_4:63072426-63072445 | None:intergenic | 20.0% |
| !! | AAGTGTATAAAACTAATTAG+AGG | - | chr5_4:63072607-63072626 | None:intergenic | 20.0% |
| !!! | AATTTGATCTTCAAATCTTT+TGG | + | chr5_4:63073287-63073306 | Msa0863290:intron | 20.0% |
| !! | ATGCATTATATTCATATCTT+TGG | + | chr5_4:63073679-63073698 | Msa0863290:three_prime_UTR | 20.0% |
| ! | AAAGAAAAATGAGTTACCAA+GGG | - | chr5_4:63070776-63070795 | None:intergenic | 25.0% |
| ! | AAAAGAAAAATGAGTTACCA+AGG | - | chr5_4:63070777-63070796 | None:intergenic | 25.0% |
| ! | AATCAATTCTACATGCAAAA+TGG | - | chr5_4:63070815-63070834 | None:intergenic | 25.0% |
| !! | TAGAATTGATTCTAACGTAA+CGG | + | chr5_4:63070824-63070843 | Msa0863290:intron | 25.0% |
| !! | GCAAAAAACATTTTTACAGT+GGG | - | chr5_4:63071154-63071173 | None:intergenic | 25.0% |
| !! | TGCAAAAAACATTTTTACAG+TGG | - | chr5_4:63071155-63071174 | None:intergenic | 25.0% |
| ! | GAATCTTTAAATTACAAGGT+TGG | - | chr5_4:63071333-63071352 | None:intergenic | 25.0% |
| !!! | TAATTCTGAAATTTGATGTC+AGG | - | chr5_4:63071220-63071239 | None:intergenic | 25.0% |
| !!! | TTCAGAATTAAAGGTACTTT+TGG | + | chr5_4:63071230-63071249 | Msa0863290:intron | 25.0% |
| ! | ACAAAATAAATGATGTGGTA+GGG | - | chr5_4:63071281-63071300 | None:intergenic | 25.0% |
| ! | TACAAAATAAATGATGTGGT+AGG | - | chr5_4:63071282-63071301 | None:intergenic | 25.0% |
| ! | ACTGTACAAAATAAATGATG+TGG | - | chr5_4:63071286-63071305 | None:intergenic | 25.0% |
| ! | GAATCTTTAAATTACAAGGT+TGG | + | chr5_4:63071333-63071352 | Msa0863290:intron | 25.0% |
| ! | AAAAGGAACTAAACAAACAA+GGG | - | chr5_4:63071432-63071451 | None:intergenic | 25.0% |
| ! | AAAAAGGAACTAAACAAACA+AGG | - | chr5_4:63071433-63071452 | None:intergenic | 25.0% |
| !!! | TTTTGATTGTTTTTCTCTCT+AGG | + | chr5_4:63071639-63071658 | Msa0863290:intron | 25.0% |
| ! | GTTATAAAAGGAATTGTTGA+TGG | + | chr5_4:63071850-63071869 | Msa0863290:CDS | 25.0% |
| !!! | AGAGGTATTGAAATATTTTG+TGG | + | chr5_4:63071906-63071925 | Msa0863290:intron | 25.0% |
| ! | TGCCAACTCATAATAAATTT+AGG | + | chr5_4:63071968-63071987 | Msa0863290:intron | 25.0% |
| ! | GCCAACTCATAATAAATTTA+GGG | + | chr5_4:63071969-63071988 | Msa0863290:intron | 25.0% |
| ! | ACCCTAAATTTATTATGAGT+TGG | - | chr5_4:63071973-63071992 | None:intergenic | 25.0% |
| !! | CAATAAAACCATTTAGAATG+AGG | - | chr5_4:63072251-63072270 | None:intergenic | 25.0% |
| !!! | CTCATTCTAAATGGTTTTAT+TGG | + | chr5_4:63072249-63072268 | Msa0863290:intron | 25.0% |
| ! | AAGTCGTAATTCTTCTTATT+AGG | + | chr5_4:63072302-63072321 | Msa0863290:intron | 25.0% |
| ! | ATAAGATTGCAATAAGCTAA+TGG | - | chr5_4:63072449-63072468 | None:intergenic | 25.0% |
| !! | AATGTCTTTTCCATTGATAA+CGG | - | chr5_4:63072714-63072733 | None:intergenic | 25.0% |
| ! | TGTTTAACATAGATCTTAGT+TGG | - | chr5_4:63072963-63072982 | None:intergenic | 25.0% |
| ! | AACTAAGATCTATGTTAAAC+AGG | + | chr5_4:63072962-63072981 | Msa0863290:CDS | 25.0% |
| !!! | GTTTAGCTTGTTTATAACTT+TGG | + | chr5_4:63073518-63073537 | Msa0863290:exon | 25.0% |
| ! | TCATACATTAGAAATCTAGA+AGG | - | chr5_4:63073611-63073630 | None:intergenic | 25.0% |
| !!! | GAGAAATGAGTTTTAAATGA+TGG | + | chr5_4:63073629-63073648 | Msa0863290:three_prime_UTR | 25.0% |
| TTCAACAAAGCAATGAGTTT+CGG | + | chr5_4:63070457-63070476 | Msa0863290:exon | 30.0% | |
| AAGAAAAATGAGTTACCAAG+GGG | - | chr5_4:63070775-63070794 | None:intergenic | 30.0% | |
| ATTCTACATGCAAAATGGAA+TGG | - | chr5_4:63070810-63070829 | None:intergenic | 30.0% | |
| TTAAGCGCTTATAGCATAAA+CGG | - | chr5_4:63071011-63071030 | None:intergenic | 30.0% | |
| TCAAACAAGGAAATTACAGA+CGG | + | chr5_4:63071360-63071379 | Msa0863290:intron | 30.0% | |
| ! | GATTGATCTGGTAAACATTT+TGG | + | chr5_4:63071569-63071588 | Msa0863290:intron | 30.0% |
| ! | TTTGAGTGTTTCTGTTACTT+AGG | + | chr5_4:63071609-63071628 | Msa0863290:intron | 30.0% |
| ! | TTGAGTGTTTCTGTTACTTA+GGG | + | chr5_4:63071610-63071629 | Msa0863290:intron | 30.0% |
| GAGAAAATCAAATGAGGAAT+AGG | - | chr5_4:63071822-63071841 | None:intergenic | 30.0% | |
| GAAGAAGAGAAAATCAAATG+AGG | - | chr5_4:63071828-63071847 | None:intergenic | 30.0% | |
| !! | CATTTGATTTTCTCTTCTTC+AGG | + | chr5_4:63071828-63071847 | Msa0863290:intron | 30.0% |
| ! | TCTCTTCTTCAGGTTATAAA+AGG | + | chr5_4:63071838-63071857 | Msa0863290:intron | 30.0% |
| TGTGGTTTATTCTTTCCAAT+TGG | + | chr5_4:63071924-63071943 | Msa0863290:intron | 30.0% | |
| ATTGCTAGTATCTGATATTG+AGG | + | chr5_4:63072053-63072072 | Msa0863290:intron | 30.0% | |
| TTGCTAGTATCTGATATTGA+GGG | + | chr5_4:63072054-63072073 | Msa0863290:intron | 30.0% | |
| AGAAAACCACAATAGAACAA+AGG | + | chr5_4:63072144-63072163 | Msa0863290:intron | 30.0% | |
| ATAGAAGACCTCATTCTAAA+TGG | + | chr5_4:63072240-63072259 | Msa0863290:intron | 30.0% | |
| GACATGTTCAATTGCTTATT+TGG | + | chr5_4:63072329-63072348 | Msa0863290:intron | 30.0% | |
| GTTCAATTGCTTATTTGGAT+AGG | + | chr5_4:63072334-63072353 | Msa0863290:intron | 30.0% | |
| AAGAAAGATTCCGTTATCAA+TGG | + | chr5_4:63072701-63072720 | Msa0863290:CDS | 30.0% | |
| !! | ATGGTTTTTCACTTGTTAGA+AGG | + | chr5_4:63072783-63072802 | Msa0863290:CDS | 30.0% |
| !! | TTTTTCACTTGTTAGAAGGT+TGG | + | chr5_4:63072787-63072806 | Msa0863290:intron | 30.0% |
| AGACAACTTCAAGATCAAAA+GGG | - | chr5_4:63073037-63073056 | None:intergenic | 30.0% | |
| !!! | GTCTCTTGTCTTTTTGAAAT+AGG | + | chr5_4:63073053-63073072 | Msa0863290:intron | 30.0% |
| TTCTATATACAAAGACTCGT+GGG | + | chr5_4:63073179-63073198 | Msa0863290:CDS | 30.0% | |
| TACTAATTACCTCTCACATT+AGG | + | chr5_4:63073326-63073345 | Msa0863290:intron | 30.0% | |
| ! | ATGATGCGCACTTTTAATAT+GGG | + | chr5_4:63073372-63073391 | Msa0863290:CDS | 30.0% |
| AGTACTATTCCTAGCAATAT+AGG | - | chr5_4:63073581-63073600 | None:intergenic | 30.0% | |
| ! | ATATATGAAGAGAGAAGCGT+AGG | - | chr5_4:63070418-63070437 | None:intergenic | 35.0% |
| GTTGCATCAGTTAAACCTAA+AGG | + | chr5_4:63070511-63070530 | Msa0863290:CDS | 35.0% | |
| ! | GTTGCTGTTAAAGCTGAATT+AGG | + | chr5_4:63070640-63070659 | Msa0863290:CDS | 35.0% |
| GTTAAAGCTGAATTAGGTCA+AGG | + | chr5_4:63070646-63070665 | Msa0863290:CDS | 35.0% | |
| AGAAAAATGAGTTACCAAGG+GGG | - | chr5_4:63070774-63070793 | None:intergenic | 35.0% | |
| ! | CTCATTTTCATGAGTTCACT+AGG | + | chr5_4:63070886-63070905 | Msa0863290:intron | 35.0% |
| ! | TCTGAAATTTGATGTCAGGA+AGG | - | chr5_4:63071216-63071235 | None:intergenic | 35.0% |
| AAATAAATGATGTGGTAGGG+AGG | - | chr5_4:63071278-63071297 | None:intergenic | 35.0% | |
| CAAACAAGGAAATTACAGAC+GGG | + | chr5_4:63071361-63071380 | Msa0863290:intron | 35.0% | |
| TGGATTTCGATCAAATGTCA+GGG | + | chr5_4:63071389-63071408 | Msa0863290:intron | 35.0% | |
| !!! | TGATTTGACTTGTTTTGCGT+AGG | + | chr5_4:63071462-63071481 | Msa0863290:intron | 35.0% |
| ! | CGTCAATGACATTGTTACTT+CGG | + | chr5_4:63071672-63071691 | Msa0863290:CDS | 35.0% |
| ! | GTCAATGACATTGTTACTTC+GGG | + | chr5_4:63071673-63071692 | Msa0863290:CDS | 35.0% |
| ! | TCAATGACATTGTTACTTCG+GGG | + | chr5_4:63071674-63071693 | Msa0863290:CDS | 35.0% |
| TTCCTAGATTACTTTGCTAC+TGG | + | chr5_4:63071712-63071731 | Msa0863290:CDS | 35.0% | |
| TGCTAGTATCTGATATTGAG+GGG | + | chr5_4:63072055-63072074 | Msa0863290:intron | 35.0% | |
| GGCATAGCATGAAATATATG+CGG | + | chr5_4:63072077-63072096 | Msa0863290:intron | 35.0% | |
| GCATAGCATGAAATATATGC+GGG | + | chr5_4:63072078-63072097 | Msa0863290:intron | 35.0% | |
| GAAATATATGCGGGAAAAGT+TGG | + | chr5_4:63072087-63072106 | Msa0863290:intron | 35.0% | |
| ! | AGTTGGAGGTATACTTATTG+AGG | + | chr5_4:63072104-63072123 | Msa0863290:intron | 35.0% |
| GCATTTAGATAAGCTTGAGT+CGG | + | chr5_4:63072169-63072188 | Msa0863290:intron | 35.0% | |
| CATTTAGATAAGCTTGAGTC+GGG | + | chr5_4:63072170-63072189 | Msa0863290:intron | 35.0% | |
| GACTTGAATAGATCATTGCA+TGG | - | chr5_4:63072287-63072306 | None:intergenic | 35.0% | |
| TCATTGAAAGATAAACTCCC+TGG | + | chr5_4:63072903-63072922 | Msa0863290:CDS | 35.0% | |
| ! | TACAGTTGCAGAAGCTTTAA+TGG | + | chr5_4:63072935-63072954 | Msa0863290:CDS | 35.0% |
| GACAACTTCAAGATCAAAAG+GGG | - | chr5_4:63073036-63073055 | None:intergenic | 35.0% | |
| GAGACAACTTCAAGATCAAA+AGG | - | chr5_4:63073038-63073057 | None:intergenic | 35.0% | |
| CTTCTATATACAAAGACTCG+TGG | + | chr5_4:63073178-63073197 | Msa0863290:CDS | 35.0% | |
| ! | AAATGCCTGCAGTTTTCAAA+TGG | + | chr5_4:63073202-63073221 | Msa0863290:CDS | 35.0% |
| ! | GATGATGCGCACTTTTAATA+TGG | + | chr5_4:63073371-63073390 | Msa0863290:CDS | 35.0% |
| ! | GCACTTTTAATATGGGCATT+GGG | + | chr5_4:63073379-63073398 | Msa0863290:CDS | 35.0% |
| !!! | TTTTAATATGGGCATTGGGA+TGG | + | chr5_4:63073383-63073402 | Msa0863290:CDS | 35.0% |
| TGTTCACTACCTATATTGCT+AGG | + | chr5_4:63073569-63073588 | Msa0863290:intron | 35.0% | |
| GTATAGAAAGATCCAACTGA+AGG | + | chr5_4:63073713-63073732 | Msa0863290:three_prime_UTR | 35.0% | |
| ! | TTTGTTGAAGAGTGGTGGAA+TGG | - | chr5_4:63070446-63070465 | None:intergenic | 40.0% |
| ! | ATTGCTTTGTTGAAGAGTGG+TGG | - | chr5_4:63070451-63070470 | None:intergenic | 40.0% |
| ! | CTCATTGCTTTGTTGAAGAG+TGG | - | chr5_4:63070454-63070473 | None:intergenic | 40.0% |
| CAAAATGTGGGTGATTGTAG+CGG | - | chr5_4:63070539-63070558 | None:intergenic | 40.0% | |
| GATTGCAATGCGCAAAATGT+GGG | - | chr5_4:63070551-63070570 | None:intergenic | 40.0% | |
| ! | CACATTTTGCGCATTGCAAT+CGG | + | chr5_4:63070550-63070569 | Msa0863290:CDS | 40.0% |
| AGGTCAAGGTCTTACTTACA+AGG | + | chr5_4:63070660-63070679 | Msa0863290:CDS | 40.0% | |
| TGTTCGAAGAATTGCCAAGA+TGG | + | chr5_4:63070717-63070736 | Msa0863290:CDS | 40.0% | |
| AAGCTATGAATCTCAGCTTG+AGG | - | chr5_4:63071057-63071076 | None:intergenic | 40.0% | |
| ! | TATTTTCCAACATACCCCAG+TGG | + | chr5_4:63071128-63071147 | Msa0863290:intron | 40.0% |
| ! | GTGATTTTCCCAAATGACAG+GGG | - | chr5_4:63071256-63071275 | None:intergenic | 40.0% |
| ! | GGTGATTTTCCCAAATGACA+GGG | - | chr5_4:63071257-63071276 | None:intergenic | 40.0% |
| ! | AGGTGATTTTCCCAAATGAC+AGG | - | chr5_4:63071258-63071277 | None:intergenic | 40.0% |
| CAAGGTTGGAATCTCAAACA+AGG | + | chr5_4:63071347-63071366 | Msa0863290:intron | 40.0% | |
| CTGGATTTCGATCAAATGTC+AGG | + | chr5_4:63071388-63071407 | Msa0863290:intron | 40.0% | |
| GGATTTCGATCAAATGTCAG+GGG | + | chr5_4:63071390-63071409 | Msa0863290:intron | 40.0% | |
| GATTTCGATCAAATGTCAGG+GGG | + | chr5_4:63071391-63071410 | Msa0863290:intron | 40.0% | |
| GTCATGAATGCCAGTTTCAA+AGG | - | chr5_4:63071541-63071560 | None:intergenic | 40.0% | |
| ACTGGCATTCATGACACTAT+TGG | + | chr5_4:63071546-63071565 | Msa0863290:CDS | 40.0% | |
| CTGGCATTCATGACACTATT+GGG | + | chr5_4:63071547-63071566 | Msa0863290:CDS | 40.0% | |
| TGACACTATTGGGATTGATC+TGG | + | chr5_4:63071557-63071576 | Msa0863290:CDS | 40.0% | |
| ! | CAATGACATTGTTACTTCGG+GGG | + | chr5_4:63071675-63071694 | Msa0863290:CDS | 40.0% |
| GACCAGTAGCAAAGTAATCT+AGG | - | chr5_4:63071717-63071736 | None:intergenic | 40.0% | |
| CAATCTGATTGTGCTCTTCT+CGG | + | chr5_4:63071880-63071899 | Msa0863290:CDS | 40.0% | |
| GCTAGTATCTGATATTGAGG+GGG | + | chr5_4:63072056-63072075 | Msa0863290:intron | 40.0% | |
| ATATATGCGGGAAAAGTTGG+AGG | + | chr5_4:63072090-63072109 | Msa0863290:intron | 40.0% | |
| ATGCAGCCTTTGTTCTATTG+TGG | - | chr5_4:63072153-63072172 | None:intergenic | 40.0% | |
| ATGCCTGGTCTATACAAAGA+AGG | + | chr5_4:63072641-63072660 | Msa0863290:CDS | 40.0% | |
| TCACCTTCTTTGTATAGACC+AGG | - | chr5_4:63072647-63072666 | None:intergenic | 40.0% | |
| GAAGGTGAGTATGATCTTAG+TGG | + | chr5_4:63072659-63072678 | Msa0863290:CDS | 40.0% | |
| GTATGATCTTAGTGGTTGTG+CGG | + | chr5_4:63072667-63072686 | Msa0863290:CDS | 40.0% | |
| CAATGGAAAAGACATTACCG+CGG | + | chr5_4:63072718-63072737 | Msa0863290:CDS | 40.0% | |
| AATGGAAAAGACATTACCGC+GGG | + | chr5_4:63072719-63072738 | Msa0863290:CDS | 40.0% | |
| !! | CTTATCGGTTTACCATCAAG+TGG | + | chr5_4:63072749-63072768 | Msa0863290:CDS | 40.0% |
| TTAGAGTGAACTCCACTTGA+TGG | - | chr5_4:63072764-63072783 | None:intergenic | 40.0% | |
| TCAAGTGGAGTTCACTCTAA+TGG | + | chr5_4:63072764-63072783 | Msa0863290:CDS | 40.0% | |
| ! | GGTAGAGTACTTGAGAAAAG+CGG | + | chr5_4:63072876-63072895 | Msa0863290:intron | 40.0% |
| TTGACATAGTCAGCAAAGGA+GGG | + | chr5_4:63073079-63073098 | Msa0863290:CDS | 40.0% | |
| AAGGGAATTGCCCATATTAC+TGG | + | chr5_4:63073105-63073124 | Msa0863290:CDS | 40.0% | |
| ! | ATTCCTCGAGTTTTTCCAGA+AGG | + | chr5_4:63073147-63073166 | Msa0863290:CDS | 40.0% |
| ! | AAACCTTCTGGAAAAACTCG+AGG | - | chr5_4:63073153-63073172 | None:intergenic | 40.0% |
| ! | CGAGTTTTTCCAGAAGGTTT+TGG | + | chr5_4:63073153-63073172 | Msa0863290:CDS | 40.0% |
| !! | ATAGAAGCACCAAAACCTTC+TGG | - | chr5_4:63073165-63073184 | None:intergenic | 40.0% |
| TGAAGCCATTTGAAAACTGC+AGG | - | chr5_4:63073210-63073229 | None:intergenic | 40.0% | |
| ! | AGTTTTCAAATGGCTTCAGC+AGG | + | chr5_4:63073212-63073231 | Msa0863290:CDS | 40.0% |
| AATTACCTCTCACATTAGGC+TGG | + | chr5_4:63073330-63073349 | Msa0863290:intron | 40.0% | |
| ATTACCTCTCACATTAGGCT+GGG | + | chr5_4:63073331-63073350 | Msa0863290:intron | 40.0% | |
| ! | CGCACTTTTAATATGGGCAT+TGG | + | chr5_4:63073378-63073397 | Msa0863290:CDS | 40.0% |
| AGTATTCTATTAGCTGCCTC+TGG | - | chr5_4:63073423-63073442 | None:intergenic | 40.0% | |
| AATAACTTCACCTATGCGGT+AGG | - | chr5_4:63073472-63073491 | None:intergenic | 40.0% | |
| CGCTAATAACTTCACCTATG+CGG | - | chr5_4:63073476-63073495 | None:intergenic | 40.0% | |
| CGCATAGGTGAAGTTATTAG+CGG | + | chr5_4:63073474-63073493 | Msa0863290:CDS | 40.0% | |
| AGGTGAAGTTATTAGCGGAA+AGG | + | chr5_4:63073479-63073498 | Msa0863290:CDS | 40.0% | |
| GGTGAAGTTATTAGCGGAAA+GGG | + | chr5_4:63073480-63073499 | Msa0863290:CDS | 40.0% | |
| GAAAGAAGAAGGAAACGCGA+TGG | - | chr5_4:63070288-63070307 | None:intergenic | 45.0% | |
| TAGTTAGGGTGGAATAGAGG+CGG | - | chr5_4:63070394-63070413 | None:intergenic | 45.0% | |
| ! | AGAGAAGCGTAGGCTAGTTA+GGG | - | chr5_4:63070408-63070427 | None:intergenic | 45.0% |
| CGATTGCAATGCGCAAAATG+TGG | - | chr5_4:63070552-63070571 | None:intergenic | 45.0% | |
| ! | ATTTTGCGCATTGCAATCGG+CGG | + | chr5_4:63070553-63070572 | Msa0863290:CDS | 45.0% |
| GGTCTTACTTACAAGGACTC+CGG | + | chr5_4:63070667-63070686 | Msa0863290:CDS | 45.0% | |
| TCTCAGCTTGAGGTCTTGAT+AGG | - | chr5_4:63071047-63071066 | None:intergenic | 45.0% | |
| ! | ATTTTTACAGTGGGCCACTG+GGG | - | chr5_4:63071145-63071164 | None:intergenic | 45.0% |
| ! | CATTTTTACAGTGGGCCACT+GGG | - | chr5_4:63071146-63071165 | None:intergenic | 45.0% |
| ! | ACATTTTTACAGTGGGCCAC+TGG | - | chr5_4:63071147-63071166 | None:intergenic | 45.0% |
| ! | TACTTTTGGCCCCTGTCATT+TGG | + | chr5_4:63071244-63071263 | Msa0863290:intron | 45.0% |
| !! | ACTTTTGGCCCCTGTCATTT+GGG | + | chr5_4:63071245-63071264 | Msa0863290:intron | 45.0% |
| GAAATTACAGACGGGCAAAC+TGG | + | chr5_4:63071369-63071388 | Msa0863290:intron | 45.0% | |
| GGTGATTCATATCTCGTTGC+TGG | + | chr5_4:63071483-63071502 | Msa0863290:intron | 45.0% | |
| ! | TATCTCGTTGCTGGTACTGA+TGG | + | chr5_4:63071492-63071511 | Msa0863290:CDS | 45.0% |
| !! | TTGCTGGTACTGATGGTGTT+GGG | + | chr5_4:63071499-63071518 | Msa0863290:CDS | 45.0% |
| !! | GTGATGCTTGCCTTTGAAAC+TGG | + | chr5_4:63071528-63071547 | Msa0863290:CDS | 45.0% |
| GTTCAGCAACATCCACATCA+AGG | - | chr5_4:63071741-63071760 | None:intergenic | 45.0% | |
| TGATGTGGATGTTGCTGAAC+AGG | + | chr5_4:63071741-63071760 | Msa0863290:CDS | 45.0% | |
| GGATGTTGCTGAACAGGTAA+TGG | + | chr5_4:63071747-63071766 | Msa0863290:intron | 45.0% | |
| !! | GTAATGGATGTGCTTCTAGC+TGG | + | chr5_4:63071763-63071782 | Msa0863290:intron | 45.0% |
| GTTGGCAAGAATAGACGAGA+CGG | - | chr5_4:63071955-63071974 | None:intergenic | 45.0% | |
| AGTTGTGCGTGTGTGAGAAA+AGG | - | chr5_4:63072537-63072556 | None:intergenic | 45.0% | |
| ATCTTAGTGGTTGTGCGGTT+GGG | + | chr5_4:63072672-63072691 | Msa0863290:CDS | 45.0% | |
| GTGCTTGACATAGTCAGCAA+AGG | + | chr5_4:63073075-63073094 | Msa0863290:CDS | 45.0% | |
| CTTGACATAGTCAGCAAAGG+AGG | + | chr5_4:63073078-63073097 | Msa0863290:CDS | 45.0% | |
| TGACATAGTCAGCAAAGGAG+GGG | + | chr5_4:63073080-63073099 | Msa0863290:CDS | 45.0% | |
| GGAATTGCCCATATTACTGG+TGG | + | chr5_4:63073108-63073127 | Msa0863290:CDS | 45.0% | |
| ATTGCCCATATTACTGGTGG+CGG | + | chr5_4:63073111-63073130 | Msa0863290:CDS | 45.0% | |
| GAAACCGCCACCAGTAATAT+GGG | - | chr5_4:63073118-63073137 | None:intergenic | 45.0% | |
| TGAAACCGCCACCAGTAATA+TGG | - | chr5_4:63073119-63073138 | None:intergenic | 45.0% | |
| GAAGAAGGAAACGCGATGGT+GGG | - | chr5_4:63070284-63070303 | None:intergenic | 50.0% | |
| AGAAGAAGGAAACGCGATGG+TGG | - | chr5_4:63070285-63070304 | None:intergenic | 50.0% | |
| GTGCGTGTTCGGAAAGAAGA+AGG | - | chr5_4:63070299-63070318 | None:intergenic | 50.0% | |
| ! | GGCTAGTTAGGGTGGAATAG+AGG | - | chr5_4:63070397-63070416 | None:intergenic | 50.0% |
| ! | GAGAGAAGCGTAGGCTAGTT+AGG | - | chr5_4:63070409-63070428 | None:intergenic | 50.0% |
| GTGATTGTAGCGGTGCCTTT+AGG | - | chr5_4:63070529-63070548 | None:intergenic | 50.0% | |
| ACCAGCGTCAATGTCAACTC+CGG | - | chr5_4:63070689-63070708 | None:intergenic | 50.0% | |
| AGAATTGCCAAGATGGCTCC+CGG | + | chr5_4:63070724-63070743 | Msa0863290:CDS | 50.0% | |
| TTCGGTGGTTTATTCCCCCT+TGG | + | chr5_4:63070757-63070776 | Msa0863290:CDS | 50.0% | |
| !! | GTTGCTGGTACTGATGGTGT+TGG | + | chr5_4:63071498-63071517 | Msa0863290:CDS | 50.0% |
| ! | TACTGATGGTGTTGGGACGA+AGG | + | chr5_4:63071506-63071525 | Msa0863290:CDS | 50.0% |
| TGCTACTGGTCACCTTGATG+TGG | + | chr5_4:63071726-63071745 | Msa0863290:CDS | 50.0% | |
| ! | GGATGTGCTTCTAGCTGGTT+TGG | + | chr5_4:63071768-63071787 | Msa0863290:intron | 50.0% |
| TCTGATTGTGCTCTTCTCGG+AGG | + | chr5_4:63071883-63071902 | Msa0863290:CDS | 50.0% | |
| GACGAGACGGCAAATCCAAT+TGG | - | chr5_4:63071942-63071961 | None:intergenic | 50.0% | |
| GATAAGCTTGAGTCGGGTAG+AGG | + | chr5_4:63072176-63072195 | Msa0863290:intron | 50.0% | |
| TTTCAGACTGCAGAGATGCC+TGG | + | chr5_4:63072626-63072645 | Msa0863290:intron | 50.0% | |
| GATCTTAGTGGTTGTGCGGT+TGG | + | chr5_4:63072671-63072690 | Msa0863290:CDS | 50.0% | |
| AGTCAGCAAAGGAGGGGTAA+AGG | + | chr5_4:63073086-63073105 | Msa0863290:CDS | 50.0% | |
| GTCAGCAAAGGAGGGGTAAA+GGG | + | chr5_4:63073087-63073106 | Msa0863290:CDS | 50.0% | |
| TCTTCCCAGCCTAATGTGAG+AGG | - | chr5_4:63073338-63073357 | None:intergenic | 50.0% | |
| ACAGAGAAAGCCTACCGCAT+AGG | + | chr5_4:63073459-63073478 | Msa0863290:CDS | 50.0% | |
| TCGGATGGAATGCCTTCAGT+TGG | - | chr5_4:63073728-63073747 | None:intergenic | 50.0% | |
| ! | GAAGCGTAGGCTAGTTAGGG+TGG | - | chr5_4:63070405-63070424 | None:intergenic | 55.0% |
| TCCGGAGTTGACATTGACGC+TGG | + | chr5_4:63070685-63070704 | Msa0863290:CDS | 55.0% | |
| GAATTGCCAAGATGGCTCCC+GGG | + | chr5_4:63070725-63070744 | Msa0863290:CDS | 55.0% | |
| TTGTGCTCTTCTCGGAGGAG+AGG | + | chr5_4:63071888-63071907 | Msa0863290:CDS | 55.0% | |
| ACCGCGGGCGACATTCTTAT+CGG | + | chr5_4:63072734-63072753 | Msa0863290:CDS | 55.0% | |
| ACCGATAAGAATGTCGCCCG+CGG | - | chr5_4:63072738-63072757 | None:intergenic | 55.0% | |
| CAACTGTAGTGCTAGCGCCA+GGG | - | chr5_4:63072923-63072942 | None:intergenic | 55.0% | |
| GGTCCTTGTAGTCACTCCAG+AGG | + | chr5_4:63073404-63073423 | Msa0863290:CDS | 55.0% | |
| !! | CTGCCTCTGGAGTGACTACA+AGG | - | chr5_4:63073410-63073429 | None:intergenic | 55.0% |
| GGTAGGTCTGCTACATCGGA+TGG | - | chr5_4:63073743-63073762 | None:intergenic | 55.0% | |
| AACCTTGCCACCACCGTCAC+CGG | + | chr5_4:63070332-63070351 | Msa0863290:intron | 60.0% | |
| GCCTGAGAGAGGAGAGACGA+CGG | - | chr5_4:63070358-63070377 | None:intergenic | 60.0% | |
| GTGGAATAGAGGCGGCTACG+GGG | - | chr5_4:63070386-63070405 | None:intergenic | 60.0% | |
| GGTGGAATAGAGGCGGCTAC+GGG | - | chr5_4:63070387-63070406 | None:intergenic | 60.0% | |
| GGGTGGAATAGAGGCGGCTA+CGG | - | chr5_4:63070388-63070407 | None:intergenic | 60.0% | |
| ACCAATCCCGGGAGCCATCT+TGG | - | chr5_4:63070734-63070753 | None:intergenic | 60.0% | |
| AAGATGGCTCCCGGGATTGG+TGG | + | chr5_4:63070733-63070752 | Msa0863290:CDS | 60.0% | |
| ACCACCGAAGCCACCAATCC+CGG | - | chr5_4:63070746-63070765 | None:intergenic | 60.0% | |
| AGTGGGCCACTGGGGTATGT+TGG | - | chr5_4:63071137-63071156 | None:intergenic | 60.0% | |
| GCAACTGTAGTGCTAGCGCC+AGG | - | chr5_4:63072924-63072943 | None:intergenic | 60.0% | |
| GAGAGAGGAGAGACGACGGC+CGG | - | chr5_4:63070354-63070373 | None:intergenic | 65.0% | |
| GCCGTCGTCTCTCCTCTCTC+AGG | + | chr5_4:63070354-63070373 | Msa0863290:intron | 65.0% | |
| GCCAAGATGGCTCCCGGGAT+TGG | + | chr5_4:63070730-63070749 | Msa0863290:CDS | 65.0% | |
| ! | GCTCCCGGGATTGGTGGCTT+CGG | + | chr5_4:63070739-63070758 | Msa0863290:CDS | 65.0% |
| CCACCGAAGCCACCAATCCC+GGG | - | chr5_4:63070745-63070764 | None:intergenic | 65.0% | |
| GCTGCGCGTGCGTGCGTGTT+CGG | - | chr5_4:63070310-63070329 | None:intergenic | 70.0% | |
| GGAGAGACGACGGCCGGTGA+CGG | - | chr5_4:63070348-63070367 | None:intergenic | 70.0% | |
| !! | ACGGGGTGCTGGCCTGAGAG+AGG | - | chr5_4:63070369-63070388 | None:intergenic | 70.0% |
| TAGAGGCGGCTACGGGGTGC+TGG | - | chr5_4:63070380-63070399 | None:intergenic | 70.0% | |
| ! | CCCGGGATTGGTGGCTTCGG+TGG | + | chr5_4:63070742-63070761 | Msa0863290:CDS | 70.0% |
| ! | GGCCGGTGACGGTGGTGGCA+AGG | - | chr5_4:63070337-63070356 | None:intergenic | 75.0% |
| ! | ACGACGGCCGGTGACGGTGG+TGG | - | chr5_4:63070342-63070361 | None:intergenic | 75.0% |
| ! | GAGACGACGGCCGGTGACGG+TGG | - | chr5_4:63070345-63070364 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 63070273 | 63073763 | 63070273 | ID=Msa0863290;Name=Msa0863290 |
| chr5_4 | mRNA | 63070273 | 63073763 | 63070273 | ID=Msa0863290-mRNA-1;Parent=Msa0863290;Name=Msa0863290-mRNA-1;_AED=0.12;_eAED=0.12;_QI=153|1|1|1|0.77|0.6|10|219|390 |
| chr5_4 | exon | 63070273 | 63070347 | 63070273 | ID=Msa0863290-mRNA-1:exon:19798;Parent=Msa0863290-mRNA-1 |
| chr5_4 | exon | 63070391 | 63070778 | 63070391 | ID=Msa0863290-mRNA-1:exon:19799;Parent=Msa0863290-mRNA-1 |
| chr5_4 | exon | 63071484 | 63071578 | 63071484 | ID=Msa0863290-mRNA-1:exon:19800;Parent=Msa0863290-mRNA-1 |
| chr5_4 | exon | 63071661 | 63071762 | 63071661 | ID=Msa0863290-mRNA-1:exon:19801;Parent=Msa0863290-mRNA-1 |
| chr5_4 | exon | 63071850 | 63071909 | 63071850 | ID=Msa0863290-mRNA-1:exon:19802;Parent=Msa0863290-mRNA-1 |
| chr5_4 | exon | 63072632 | 63072804 | 63072632 | ID=Msa0863290-mRNA-1:exon:19803;Parent=Msa0863290-mRNA-1 |
| chr5_4 | exon | 63072881 | 63072983 | 63072881 | ID=Msa0863290-mRNA-1:exon:19804;Parent=Msa0863290-mRNA-1 |
| chr5_4 | exon | 63073075 | 63073233 | 63073075 | ID=Msa0863290-mRNA-1:exon:19805;Parent=Msa0863290-mRNA-1 |
| chr5_4 | exon | 63073348 | 63073570 | 63073348 | ID=Msa0863290-mRNA-1:exon:19806;Parent=Msa0863290-mRNA-1 |
| chr5_4 | exon | 63073597 | 63073763 | 63073597 | ID=Msa0863290-mRNA-1:exon:19807;Parent=Msa0863290-mRNA-1 |
| chr5_4 | five_prime_UTR | 63070273 | 63070347 | 63070273 | ID=Msa0863290-mRNA-1:five_prime_utr;Parent=Msa0863290-mRNA-1 |
| chr5_4 | five_prime_UTR | 63070391 | 63070468 | 63070391 | ID=Msa0863290-mRNA-1:five_prime_utr;Parent=Msa0863290-mRNA-1 |
| chr5_4 | CDS | 63070469 | 63070778 | 63070469 | ID=Msa0863290-mRNA-1:cds;Parent=Msa0863290-mRNA-1 |
| chr5_4 | CDS | 63071484 | 63071578 | 63071484 | ID=Msa0863290-mRNA-1:cds;Parent=Msa0863290-mRNA-1 |
| chr5_4 | CDS | 63071661 | 63071762 | 63071661 | ID=Msa0863290-mRNA-1:cds;Parent=Msa0863290-mRNA-1 |
| chr5_4 | CDS | 63071850 | 63071909 | 63071850 | ID=Msa0863290-mRNA-1:cds;Parent=Msa0863290-mRNA-1 |
| chr5_4 | CDS | 63072632 | 63072804 | 63072632 | ID=Msa0863290-mRNA-1:cds;Parent=Msa0863290-mRNA-1 |
| chr5_4 | CDS | 63072881 | 63072983 | 63072881 | ID=Msa0863290-mRNA-1:cds;Parent=Msa0863290-mRNA-1 |
| chr5_4 | CDS | 63073075 | 63073233 | 63073075 | ID=Msa0863290-mRNA-1:cds;Parent=Msa0863290-mRNA-1 |
| chr5_4 | CDS | 63073348 | 63073518 | 63073348 | ID=Msa0863290-mRNA-1:cds;Parent=Msa0863290-mRNA-1 |
| chr5_4 | three_prime_UTR | 63073519 | 63073570 | 63073519 | ID=Msa0863290-mRNA-1:three_prime_utr;Parent=Msa0863290-mRNA-1 |
| chr5_4 | three_prime_UTR | 63073597 | 63073763 | 63073597 | ID=Msa0863290-mRNA-1:three_prime_utr;Parent=Msa0863290-mRNA-1 |
| Gene Sequence |
| Protein sequence |
