Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0743600 | XP_003617696.1 | 97.778 | 270 | 6 | 0 | 1 | 270 | 1 | 270 | 0.0 | 547 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0743600 | G7K4D9 | 97.778 | 270 | 6 | 0 | 1 | 270 | 1 | 270 | 0.0 | 547 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0743600 | Msa0863690 | 0.810447 | 1.147565e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0743600 | MtrunA17_Chr5g0445321 | 98.370 | 184 | 3 | 0 | 87 | 270 | 1 | 184 | 3.62e-134 | 376 |
| Msa0743600 | MtrunA17_Chr3g0114991 | 33.493 | 209 | 124 | 5 | 74 | 269 | 243 | 449 | 4.03e-33 | 125 |
| Msa0743600 | MtrunA17_Chr1g0156521 | 34.466 | 206 | 118 | 7 | 74 | 269 | 201 | 399 | 1.22e-29 | 115 |
| Msa0743600 | MtrunA17_Chr4g0042091 | 34.300 | 207 | 122 | 5 | 74 | 268 | 230 | 434 | 5.96e-28 | 111 |
| Msa0743600 | MtrunA17_Chr3g0104431 | 30.603 | 232 | 136 | 9 | 61 | 270 | 160 | 388 | 7.78e-24 | 99.4 |
| Msa0743600 | MtrunA17_Chr8g0376191 | 32.544 | 169 | 96 | 7 | 113 | 269 | 2 | 164 | 1.64e-18 | 80.5 |
| Msa0743600 | MtrunA17_Chr2g0280501 | 28.019 | 207 | 125 | 6 | 80 | 269 | 176 | 375 | 5.88e-17 | 79.7 |
| Msa0743600 | MtrunA17_Chr2g0280521 | 33.929 | 112 | 68 | 2 | 79 | 186 | 11 | 120 | 1.73e-13 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0743600 | AT5G54630.1 | 35.349 | 215 | 116 | 8 | 74 | 268 | 258 | 469 | 6.66e-26 | 106 |
| Msa0743600 | AT4G27240.1 | 33.333 | 216 | 125 | 7 | 68 | 268 | 217 | 428 | 1.35e-24 | 102 |
| Msa0743600 | AT1G75710.1 | 31.169 | 231 | 120 | 8 | 74 | 269 | 231 | 457 | 6.03e-24 | 100 |
| Msa0743600 | AT4G27240.2 | 33.898 | 177 | 103 | 5 | 68 | 234 | 217 | 389 | 5.15e-21 | 92.0 |
| Msa0743600 | AT2G29660.1 | 30.045 | 223 | 125 | 8 | 74 | 269 | 153 | 371 | 4.16e-20 | 89.0 |
| Msa0743600 | AT1G11490.2 | 27.602 | 221 | 139 | 8 | 65 | 269 | 148 | 363 | 9.55e-16 | 76.6 |
| Msa0743600 | AT1G11490.1 | 27.602 | 221 | 139 | 8 | 65 | 269 | 148 | 363 | 9.55e-16 | 76.6 |
Find 47 sgRNAs with CRISPR-Local
Find 156 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTACTCCCTTTGCCAAATTT+TGG | 0.172903 | 5_1:-64019369 | None:intergenic |
| TTTCCATCTACTGTGCTTCT+TGG | 0.204797 | 5_1:-64020231 | None:intergenic |
| ATAAGGCAGCCACCAAAATT+TGG | 0.275929 | 5_1:+64019357 | Msa0743600:CDS |
| CCTCTTAATTTGTGTGTGTT+TGG | 0.288766 | 5_1:-64019266 | None:intergenic |
| ACAAACTCACTGATGTAATA+AGG | 0.337481 | 5_1:+64019340 | Msa0743600:CDS |
| GGAAGGTTAGAACAGTTCTA+AGG | 0.351359 | 5_1:+64020133 | Msa0743600:CDS |
| AGATCATGAACTTTCTTCAT+AGG | 0.351902 | 5_1:-64020303 | None:intergenic |
| AGCCTAGCCTGTGTGTTGTT+TGG | 0.357957 | 5_1:-64019486 | None:intergenic |
| AGCCTGTGTGTTGTTTGGCT+TGG | 0.359414 | 5_1:-64019481 | None:intergenic |
| ATAGTTTGCAGGATAATTGC+TGG | 0.375937 | 5_1:+64020474 | Msa0743600:CDS |
| AACCTTCCTCAGCGGCTTTG+CGG | 0.378137 | 5_1:-64020118 | None:intergenic |
| AAACATTTAAAGCAGACAAA+AGG | 0.418695 | 5_1:-64019219 | None:intergenic |
| CATCCAAGAAGCACAGTAGA+TGG | 0.426284 | 5_1:+64020228 | Msa0743600:CDS |
| AGGAAGAAATGCAAGCCTTA+TGG | 0.429141 | 5_1:+64019286 | Msa0743600:exon |
| ACTGTGCTTCTTGGATGCCT+TGG | 0.430435 | 5_1:-64020222 | None:intergenic |
| CTTTCTTCATAGGTTTCCCT+TGG | 0.432529 | 5_1:-64020293 | None:intergenic |
| CCAAACACACACAAATTAAG+AGG | 0.448194 | 5_1:+64019266 | Msa0743600:five_prime_UTR |
| GAGTAGCTATGTTCTACAAA+AGG | 0.501056 | 5_1:+64019386 | Msa0743600:CDS |
| GTCTTTCAAAGACAACCATA+AGG | 0.501827 | 5_1:-64019301 | None:intergenic |
| AACATTTAAAGCAGACAAAA+GGG | 0.510124 | 5_1:-64019218 | None:intergenic |
| AGCCACCAAAATTTGGCAAA+GGG | 0.512723 | 5_1:+64019364 | Msa0743600:CDS |
| AGATGATATTTCAGAAAGCA+TGG | 0.538196 | 5_1:+64020088 | Msa0743600:CDS |
| GTTCCGAGTGTGACTCAACT+AGG | 0.547370 | 5_1:+64020535 | Msa0743600:CDS |
| CAGCCACCAAAATTTGGCAA+AGG | 0.555527 | 5_1:+64019363 | Msa0743600:CDS |
| TTGAAAGACAATGTCAAATG+TGG | 0.555657 | 5_1:+64019315 | Msa0743600:CDS |
| GAAGGTTAGAACAGTTCTAA+GGG | 0.574783 | 5_1:+64020134 | Msa0743600:CDS |
| TACCGCAAAGCCGCTGAGGA+AGG | 0.575197 | 5_1:+64020116 | Msa0743600:CDS |
| GAGTGTGACTCAACTAGGCT+AGG | 0.578659 | 5_1:+64020540 | Msa0743600:CDS |
| AAGTGAAGGAACAGTATCCA+AGG | 0.582851 | 5_1:+64020205 | Msa0743600:CDS |
| TTGAAAATTATGACAAAACA+AGG | 0.601697 | 5_1:-64020618 | None:intergenic |
| ACTGCAGTGAATGAAGTTGA+TGG | 0.605466 | 5_1:+64020498 | Msa0743600:CDS |
| TAGCTGGAATTTCCATGAGG+GGG | 0.606181 | 5_1:-64019446 | None:intergenic |
| ACTACAATGAGATGTTTCCA+AGG | 0.610196 | 5_1:+64020276 | Msa0743600:CDS |
| AAACAAGGAAGAATAGAACT+AGG | 0.612460 | 5_1:-64020603 | None:intergenic |
| TGGATGTGTATGTGCTCATG+TGG | 0.613644 | 5_1:-64019246 | None:intergenic |
| TCTAGCTGGAATTTCCATGA+GGG | 0.619119 | 5_1:-64019448 | None:intergenic |
| TTCCAAGCCAAACAACACAC+AGG | 0.629228 | 5_1:+64019479 | Msa0743600:CDS |
| AGCCAAACAACACACAGGCT+AGG | 0.637349 | 5_1:+64019484 | Msa0743600:CDS |
| AGCTGGAATTTCCATGAGGG+GGG | 0.644140 | 5_1:-64019445 | None:intergenic |
| TGAATACCGCAAAGCCGCTG+AGG | 0.650532 | 5_1:+64020112 | Msa0743600:CDS |
| CTAGCTGGAATTTCCATGAG+GGG | 0.652167 | 5_1:-64019447 | None:intergenic |
| TAGCCTAGTTGAGTCACACT+CGG | 0.652926 | 5_1:-64020538 | None:intergenic |
| ACTTGACAAAATCGACACGA+TGG | 0.658301 | 5_1:-64020336 | None:intergenic |
| CTACAATGAGATGTTTCCAA+GGG | 0.668592 | 5_1:+64020277 | Msa0743600:CDS |
| GTCTAGCTGGAATTTCCATG+AGG | 0.668741 | 5_1:-64019449 | None:intergenic |
| TGTGACTCAACTAGGCTAGG+AGG | 0.676101 | 5_1:+64020543 | Msa0743600:CDS |
| ACTGTTCTAACCTTCCTCAG+CGG | 0.727216 | 5_1:-64020126 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATAAATGTTATTTAAAAG+AGG | - | chr5_1:64019532-64019551 | None:intergenic | 10.0% |
| !!! | TATTTACTATTTATTTTATG+TGG | + | chr5_1:64019982-64020001 | Msa0743600:intron | 10.0% |
| !!! | ATTTACTATTTATTTTATGT+GGG | + | chr5_1:64019983-64020002 | Msa0743600:intron | 10.0% |
| !!! | TTATAAATGTTATTTAAAAG+AGG | - | chr5_1:64019532-64019551 | None:intergenic | 10.0% |
| !!! | TATTTACTATTTATTTTATG+TGG | + | chr5_1:64019982-64020001 | Msa0743600:intron | 10.0% |
| !!! | ATTTACTATTTATTTTATGT+GGG | + | chr5_1:64019983-64020002 | Msa0743600:intron | 10.0% |
| !! | ACAAAGTACAATTTAATAAT+AGG | - | chr5_1:64019928-64019947 | None:intergenic | 15.0% |
| !! | ACAAAGTACAATTTAATAAT+AGG | - | chr5_1:64019928-64019947 | None:intergenic | 15.0% |
| !! | TTGAAATGTAAAAAGAGTTA+TGG | + | chr5_1:64019666-64019685 | Msa0743600:intron | 20.0% |
| !!! | AAAGTGCTTATAAATAATGA+CGG | - | chr5_1:64019865-64019884 | None:intergenic | 20.0% |
| !! | TTGAAAATTATGACAAAACA+AGG | - | chr5_1:64020621-64020640 | None:intergenic | 20.0% |
| !! | TTGAAATGTAAAAAGAGTTA+TGG | + | chr5_1:64019666-64019685 | Msa0743600:intron | 20.0% |
| !!! | AAAGTGCTTATAAATAATGA+CGG | - | chr5_1:64019865-64019884 | None:intergenic | 20.0% |
| !! | TTGAAAATTATGACAAAACA+AGG | - | chr5_1:64020621-64020640 | None:intergenic | 20.0% |
| !! | AACATTTAAAGCAGACAAAA+GGG | - | chr5_1:64019221-64019240 | None:intergenic | 25.0% |
| !! | AAACATTTAAAGCAGACAAA+AGG | - | chr5_1:64019222-64019241 | None:intergenic | 25.0% |
| !!! | AAATAGTTTGCTACATTATG+TGG | - | chr5_1:64019704-64019723 | None:intergenic | 25.0% |
| !! | TCTCAACAATTTTTCTTGAA+GGG | - | chr5_1:64020071-64020090 | None:intergenic | 25.0% |
| !! | ATCTCAACAATTTTTCTTGA+AGG | - | chr5_1:64020072-64020091 | None:intergenic | 25.0% |
| ! | GAAATATAGAGAAAAAGTGA+AGG | + | chr5_1:64020191-64020210 | Msa0743600:CDS | 25.0% |
| !!! | AATTCAATTCAATTTTGACG+CGG | + | chr5_1:64020359-64020378 | Msa0743600:CDS | 25.0% |
| !!! | AAAGAGTTTTAATAGTTTGC+AGG | + | chr5_1:64020463-64020482 | Msa0743600:CDS | 25.0% |
| !! | AACATTTAAAGCAGACAAAA+GGG | - | chr5_1:64019221-64019240 | None:intergenic | 25.0% |
| !! | AAACATTTAAAGCAGACAAA+AGG | - | chr5_1:64019222-64019241 | None:intergenic | 25.0% |
| !!! | AAATAGTTTGCTACATTATG+TGG | - | chr5_1:64019704-64019723 | None:intergenic | 25.0% |
| !! | TCTCAACAATTTTTCTTGAA+GGG | - | chr5_1:64020071-64020090 | None:intergenic | 25.0% |
| !! | ATCTCAACAATTTTTCTTGA+AGG | - | chr5_1:64020072-64020091 | None:intergenic | 25.0% |
| ! | GAAATATAGAGAAAAAGTGA+AGG | + | chr5_1:64020191-64020210 | Msa0743600:CDS | 25.0% |
| !!! | AATTCAATTCAATTTTGACG+CGG | + | chr5_1:64020359-64020378 | Msa0743600:CDS | 25.0% |
| !!! | AAAGAGTTTTAATAGTTTGC+AGG | + | chr5_1:64020463-64020482 | Msa0743600:CDS | 25.0% |
| TTGAAAGACAATGTCAAATG+TGG | + | chr5_1:64019315-64019334 | Msa0743600:CDS | 30.0% | |
| ACAAACTCACTGATGTAATA+AGG | + | chr5_1:64019340-64019359 | Msa0743600:CDS | 30.0% | |
| TATGTTGTGTTCATGCAAAT+AGG | - | chr5_1:64019623-64019642 | None:intergenic | 30.0% | |
| CATCAAAAACTTGACATCTA+CGG | - | chr5_1:64019800-64019819 | None:intergenic | 30.0% | |
| ! | TCCTCCACATTGTTAAATTT+TGG | + | chr5_1:64020026-64020045 | Msa0743600:intron | 30.0% |
| TCTGCCAAAATTTAACAATG+TGG | - | chr5_1:64020033-64020052 | None:intergenic | 30.0% | |
| AGATGATATTTCAGAAAGCA+TGG | + | chr5_1:64020088-64020107 | Msa0743600:CDS | 30.0% | |
| AGATCATGAACTTTCTTCAT+AGG | - | chr5_1:64020306-64020325 | None:intergenic | 30.0% | |
| AAACAAGGAAGAATAGAACT+AGG | - | chr5_1:64020606-64020625 | None:intergenic | 30.0% | |
| TTGAAAGACAATGTCAAATG+TGG | + | chr5_1:64019315-64019334 | Msa0743600:CDS | 30.0% | |
| ACAAACTCACTGATGTAATA+AGG | + | chr5_1:64019340-64019359 | Msa0743600:CDS | 30.0% | |
| TATGTTGTGTTCATGCAAAT+AGG | - | chr5_1:64019623-64019642 | None:intergenic | 30.0% | |
| CATCAAAAACTTGACATCTA+CGG | - | chr5_1:64019800-64019819 | None:intergenic | 30.0% | |
| ! | TCCTCCACATTGTTAAATTT+TGG | + | chr5_1:64020026-64020045 | Msa0743600:intron | 30.0% |
| TCTGCCAAAATTTAACAATG+TGG | - | chr5_1:64020033-64020052 | None:intergenic | 30.0% | |
| AGATGATATTTCAGAAAGCA+TGG | + | chr5_1:64020088-64020107 | Msa0743600:CDS | 30.0% | |
| AGATCATGAACTTTCTTCAT+AGG | - | chr5_1:64020306-64020325 | None:intergenic | 30.0% | |
| AAACAAGGAAGAATAGAACT+AGG | - | chr5_1:64020606-64020625 | None:intergenic | 30.0% | |
| !! | CCTCTTAATTTGTGTGTGTT+TGG | - | chr5_1:64019269-64019288 | None:intergenic | 35.0% |
| CCAAACACACACAAATTAAG+AGG | + | chr5_1:64019266-64019285 | Msa0743600:five_prime_UTR | 35.0% | |
| GTCTTTCAAAGACAACCATA+AGG | - | chr5_1:64019304-64019323 | None:intergenic | 35.0% | |
| GAGTAGCTATGTTCTACAAA+AGG | + | chr5_1:64019386-64019405 | Msa0743600:CDS | 35.0% | |
| ! | TTGGAAAAAACTAGTCTAGC+TGG | - | chr5_1:64019465-64019484 | None:intergenic | 35.0% |
| TTCTTACTACTGAACTCCTT+TGG | + | chr5_1:64019582-64019601 | Msa0743600:intron | 35.0% | |
| GAACAACAAACTCTTTCCAA+AGG | - | chr5_1:64019601-64019620 | None:intergenic | 35.0% | |
| ! | CAGTATCAAACTTGTTTCCA+TGG | + | chr5_1:64019754-64019773 | Msa0743600:intron | 35.0% |
| CAGACACTTTGTTAAATCCA+TGG | - | chr5_1:64019774-64019793 | None:intergenic | 35.0% | |
| AATAGCCGTCTAATTCAATG+TGG | - | chr5_1:64019832-64019851 | None:intergenic | 35.0% | |
| GTGCTTATAAATAATGACGG+AGG | - | chr5_1:64019862-64019881 | None:intergenic | 35.0% | |
| GCCAAAATTTAACAATGTGG+AGG | - | chr5_1:64020030-64020049 | None:intergenic | 35.0% | |
| !! | TGTTAAATTTTGGCAGAGCT+TGG | + | chr5_1:64020036-64020055 | Msa0743600:intron | 35.0% |
| ! | GAAGGTTAGAACAGTTCTAA+GGG | + | chr5_1:64020134-64020153 | Msa0743600:CDS | 35.0% |
| ACTACAATGAGATGTTTCCA+AGG | + | chr5_1:64020276-64020295 | Msa0743600:CDS | 35.0% | |
| CTACAATGAGATGTTTCCAA+GGG | + | chr5_1:64020277-64020296 | Msa0743600:CDS | 35.0% | |
| ! | ATAGTTTGCAGGATAATTGC+TGG | + | chr5_1:64020474-64020493 | Msa0743600:CDS | 35.0% |
| !! | CCTCTTAATTTGTGTGTGTT+TGG | - | chr5_1:64019269-64019288 | None:intergenic | 35.0% |
| CCAAACACACACAAATTAAG+AGG | + | chr5_1:64019266-64019285 | Msa0743600:five_prime_UTR | 35.0% | |
| GTCTTTCAAAGACAACCATA+AGG | - | chr5_1:64019304-64019323 | None:intergenic | 35.0% | |
| GAGTAGCTATGTTCTACAAA+AGG | + | chr5_1:64019386-64019405 | Msa0743600:CDS | 35.0% | |
| ! | TTGGAAAAAACTAGTCTAGC+TGG | - | chr5_1:64019465-64019484 | None:intergenic | 35.0% |
| TTCTTACTACTGAACTCCTT+TGG | + | chr5_1:64019582-64019601 | Msa0743600:intron | 35.0% | |
| GAACAACAAACTCTTTCCAA+AGG | - | chr5_1:64019601-64019620 | None:intergenic | 35.0% | |
| ! | CAGTATCAAACTTGTTTCCA+TGG | + | chr5_1:64019754-64019773 | Msa0743600:intron | 35.0% |
| CAGACACTTTGTTAAATCCA+TGG | - | chr5_1:64019774-64019793 | None:intergenic | 35.0% | |
| AATAGCCGTCTAATTCAATG+TGG | - | chr5_1:64019832-64019851 | None:intergenic | 35.0% | |
| GTGCTTATAAATAATGACGG+AGG | - | chr5_1:64019862-64019881 | None:intergenic | 35.0% | |
| GCCAAAATTTAACAATGTGG+AGG | - | chr5_1:64020030-64020049 | None:intergenic | 35.0% | |
| !! | TGTTAAATTTTGGCAGAGCT+TGG | + | chr5_1:64020036-64020055 | Msa0743600:intron | 35.0% |
| ! | GAAGGTTAGAACAGTTCTAA+GGG | + | chr5_1:64020134-64020153 | Msa0743600:CDS | 35.0% |
| ACTACAATGAGATGTTTCCA+AGG | + | chr5_1:64020276-64020295 | Msa0743600:CDS | 35.0% | |
| CTACAATGAGATGTTTCCAA+GGG | + | chr5_1:64020277-64020296 | Msa0743600:CDS | 35.0% | |
| ! | ATAGTTTGCAGGATAATTGC+TGG | + | chr5_1:64020474-64020493 | Msa0743600:CDS | 35.0% |
| AGGAAGAAATGCAAGCCTTA+TGG | + | chr5_1:64019286-64019305 | Msa0743600:exon | 40.0% | |
| ATAAGGCAGCCACCAAAATT+TGG | + | chr5_1:64019357-64019376 | Msa0743600:CDS | 40.0% | |
| AGCCACCAAAATTTGGCAAA+GGG | + | chr5_1:64019364-64019383 | Msa0743600:CDS | 40.0% | |
| ! | CTACTCCCTTTGCCAAATTT+TGG | - | chr5_1:64019372-64019391 | None:intergenic | 40.0% |
| TCTAGCTGGAATTTCCATGA+GGG | - | chr5_1:64019451-64019470 | None:intergenic | 40.0% | |
| TGCAGCCACATTGAATTAGA+CGG | + | chr5_1:64019824-64019843 | Msa0743600:intron | 40.0% | |
| !! | ATTTTGGCAGAGCTTGGTAT+TGG | + | chr5_1:64020042-64020061 | Msa0743600:intron | 40.0% |
| GGAAGGTTAGAACAGTTCTA+AGG | + | chr5_1:64020133-64020152 | Msa0743600:CDS | 40.0% | |
| AAGTGAAGGAACAGTATCCA+AGG | + | chr5_1:64020205-64020224 | Msa0743600:CDS | 40.0% | |
| TTTCCATCTACTGTGCTTCT+TGG | - | chr5_1:64020234-64020253 | None:intergenic | 40.0% | |
| CTTTCTTCATAGGTTTCCCT+TGG | - | chr5_1:64020296-64020315 | None:intergenic | 40.0% | |
| ACTTGACAAAATCGACACGA+TGG | - | chr5_1:64020339-64020358 | None:intergenic | 40.0% | |
| ACTGCAGTGAATGAAGTTGA+TGG | + | chr5_1:64020498-64020517 | Msa0743600:CDS | 40.0% | |
| AGGAAGAAATGCAAGCCTTA+TGG | + | chr5_1:64019286-64019305 | Msa0743600:exon | 40.0% | |
| ATAAGGCAGCCACCAAAATT+TGG | + | chr5_1:64019357-64019376 | Msa0743600:CDS | 40.0% | |
| AGCCACCAAAATTTGGCAAA+GGG | + | chr5_1:64019364-64019383 | Msa0743600:CDS | 40.0% | |
| ! | CTACTCCCTTTGCCAAATTT+TGG | - | chr5_1:64019372-64019391 | None:intergenic | 40.0% |
| TCTAGCTGGAATTTCCATGA+GGG | - | chr5_1:64019451-64019470 | None:intergenic | 40.0% | |
| TGCAGCCACATTGAATTAGA+CGG | + | chr5_1:64019824-64019843 | Msa0743600:intron | 40.0% | |
| !! | ATTTTGGCAGAGCTTGGTAT+TGG | + | chr5_1:64020042-64020061 | Msa0743600:intron | 40.0% |
| GGAAGGTTAGAACAGTTCTA+AGG | + | chr5_1:64020133-64020152 | Msa0743600:CDS | 40.0% | |
| AAGTGAAGGAACAGTATCCA+AGG | + | chr5_1:64020205-64020224 | Msa0743600:CDS | 40.0% | |
| TTTCCATCTACTGTGCTTCT+TGG | - | chr5_1:64020234-64020253 | None:intergenic | 40.0% | |
| CTTTCTTCATAGGTTTCCCT+TGG | - | chr5_1:64020296-64020315 | None:intergenic | 40.0% | |
| ACTTGACAAAATCGACACGA+TGG | - | chr5_1:64020339-64020358 | None:intergenic | 40.0% | |
| ACTGCAGTGAATGAAGTTGA+TGG | + | chr5_1:64020498-64020517 | Msa0743600:CDS | 40.0% | |
| TGGATGTGTATGTGCTCATG+TGG | - | chr5_1:64019249-64019268 | None:intergenic | 45.0% | |
| CAGCCACCAAAATTTGGCAA+AGG | + | chr5_1:64019363-64019382 | Msa0743600:CDS | 45.0% | |
| ! | CTCCCTTTGCCAAATTTTGG+TGG | - | chr5_1:64019369-64019388 | None:intergenic | 45.0% |
| AGAAGATAATACCCCCCTCA+TGG | + | chr5_1:64019434-64019453 | Msa0743600:CDS | 45.0% | |
| TAGCTGGAATTTCCATGAGG+GGG | - | chr5_1:64019449-64019468 | None:intergenic | 45.0% | |
| CTAGCTGGAATTTCCATGAG+GGG | - | chr5_1:64019450-64019469 | None:intergenic | 45.0% | |
| GTCTAGCTGGAATTTCCATG+AGG | - | chr5_1:64019452-64019471 | None:intergenic | 45.0% | |
| TTCCAAGCCAAACAACACAC+AGG | + | chr5_1:64019479-64019498 | Msa0743600:CDS | 45.0% | |
| ! | AACACACAGGCTAGGCTTTT+CGG | + | chr5_1:64019492-64019511 | Msa0743600:CDS | 45.0% |
| ACTGTTCTAACCTTCCTCAG+CGG | - | chr5_1:64020129-64020148 | None:intergenic | 45.0% | |
| ! | CATCCAAGAAGCACAGTAGA+TGG | + | chr5_1:64020228-64020247 | Msa0743600:CDS | 45.0% |
| TAGCCTAGTTGAGTCACACT+CGG | - | chr5_1:64020541-64020560 | None:intergenic | 45.0% | |
| TGGATGTGTATGTGCTCATG+TGG | - | chr5_1:64019249-64019268 | None:intergenic | 45.0% | |
| CAGCCACCAAAATTTGGCAA+AGG | + | chr5_1:64019363-64019382 | Msa0743600:CDS | 45.0% | |
| ! | CTCCCTTTGCCAAATTTTGG+TGG | - | chr5_1:64019369-64019388 | None:intergenic | 45.0% |
| AGAAGATAATACCCCCCTCA+TGG | + | chr5_1:64019434-64019453 | Msa0743600:CDS | 45.0% | |
| TAGCTGGAATTTCCATGAGG+GGG | - | chr5_1:64019449-64019468 | None:intergenic | 45.0% | |
| CTAGCTGGAATTTCCATGAG+GGG | - | chr5_1:64019450-64019469 | None:intergenic | 45.0% | |
| GTCTAGCTGGAATTTCCATG+AGG | - | chr5_1:64019452-64019471 | None:intergenic | 45.0% | |
| TTCCAAGCCAAACAACACAC+AGG | + | chr5_1:64019479-64019498 | Msa0743600:CDS | 45.0% | |
| ! | AACACACAGGCTAGGCTTTT+CGG | + | chr5_1:64019492-64019511 | Msa0743600:CDS | 45.0% |
| ACTGTTCTAACCTTCCTCAG+CGG | - | chr5_1:64020129-64020148 | None:intergenic | 45.0% | |
| ! | CATCCAAGAAGCACAGTAGA+TGG | + | chr5_1:64020228-64020247 | Msa0743600:CDS | 45.0% |
| TAGCCTAGTTGAGTCACACT+CGG | - | chr5_1:64020541-64020560 | None:intergenic | 45.0% | |
| AGCTGGAATTTCCATGAGGG+GGG | - | chr5_1:64019448-64019467 | None:intergenic | 50.0% | |
| !! | AGCCTGTGTGTTGTTTGGCT+TGG | - | chr5_1:64019484-64019503 | None:intergenic | 50.0% |
| AGCCAAACAACACACAGGCT+AGG | + | chr5_1:64019484-64019503 | Msa0743600:CDS | 50.0% | |
| ! | AGCCTAGCCTGTGTGTTGTT+TGG | - | chr5_1:64019489-64019508 | None:intergenic | 50.0% |
| ACTGTGCTTCTTGGATGCCT+TGG | - | chr5_1:64020225-64020244 | None:intergenic | 50.0% | |
| !! | CAATTTTGACGCGGAACACG+AGG | + | chr5_1:64020368-64020387 | Msa0743600:CDS | 50.0% |
| GTTCCGAGTGTGACTCAACT+AGG | + | chr5_1:64020535-64020554 | Msa0743600:CDS | 50.0% | |
| GAGTGTGACTCAACTAGGCT+AGG | + | chr5_1:64020540-64020559 | Msa0743600:CDS | 50.0% | |
| TGTGACTCAACTAGGCTAGG+AGG | + | chr5_1:64020543-64020562 | Msa0743600:CDS | 50.0% | |
| AGCTGGAATTTCCATGAGGG+GGG | - | chr5_1:64019448-64019467 | None:intergenic | 50.0% | |
| !! | AGCCTGTGTGTTGTTTGGCT+TGG | - | chr5_1:64019484-64019503 | None:intergenic | 50.0% |
| AGCCAAACAACACACAGGCT+AGG | + | chr5_1:64019484-64019503 | Msa0743600:CDS | 50.0% | |
| ! | AGCCTAGCCTGTGTGTTGTT+TGG | - | chr5_1:64019489-64019508 | None:intergenic | 50.0% |
| ACTGTGCTTCTTGGATGCCT+TGG | - | chr5_1:64020225-64020244 | None:intergenic | 50.0% | |
| !! | CAATTTTGACGCGGAACACG+AGG | + | chr5_1:64020368-64020387 | Msa0743600:CDS | 50.0% |
| GTTCCGAGTGTGACTCAACT+AGG | + | chr5_1:64020535-64020554 | Msa0743600:CDS | 50.0% | |
| GAGTGTGACTCAACTAGGCT+AGG | + | chr5_1:64020540-64020559 | Msa0743600:CDS | 50.0% | |
| TGTGACTCAACTAGGCTAGG+AGG | + | chr5_1:64020543-64020562 | Msa0743600:CDS | 50.0% | |
| TGAATACCGCAAAGCCGCTG+AGG | + | chr5_1:64020112-64020131 | Msa0743600:CDS | 55.0% | |
| AACCTTCCTCAGCGGCTTTG+CGG | - | chr5_1:64020121-64020140 | None:intergenic | 55.0% | |
| TGAATACCGCAAAGCCGCTG+AGG | + | chr5_1:64020112-64020131 | Msa0743600:CDS | 55.0% | |
| AACCTTCCTCAGCGGCTTTG+CGG | - | chr5_1:64020121-64020140 | None:intergenic | 55.0% | |
| TACCGCAAAGCCGCTGAGGA+AGG | + | chr5_1:64020116-64020135 | Msa0743600:CDS | 60.0% | |
| TACCGCAAAGCCGCTGAGGA+AGG | + | chr5_1:64020116-64020135 | Msa0743600:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 64019210 | 64020644 | 64019210 | ID=Msa0743600;Name=Msa0743600 |
| chr5_1 | mRNA | 64019210 | 64020644 | 64019210 | ID=Msa0743600-mRNA-1;Parent=Msa0743600;Name=Msa0743600-mRNA-1;_AED=0.01;_eAED=0.01;_QI=84|1|0.5|1|1|1|2|0|270 |
| chr5_1 | exon | 64019210 | 64019513 | 64019210 | ID=Msa0743600-mRNA-1:exon:18922;Parent=Msa0743600-mRNA-1 |
| chr5_1 | exon | 64020052 | 64020644 | 64020052 | ID=Msa0743600-mRNA-1:exon:18923;Parent=Msa0743600-mRNA-1 |
| chr5_1 | five_prime_UTR | 64019210 | 64019293 | 64019210 | ID=Msa0743600-mRNA-1:five_prime_utr;Parent=Msa0743600-mRNA-1 |
| chr5_1 | CDS | 64019294 | 64019513 | 64019294 | ID=Msa0743600-mRNA-1:cds;Parent=Msa0743600-mRNA-1 |
| chr5_1 | CDS | 64020052 | 64020644 | 64020052 | ID=Msa0743600-mRNA-1:cds;Parent=Msa0743600-mRNA-1 |
| Gene Sequence |
| Protein sequence |
