Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0863690 | XP_003617696.1 | 97.037 | 270 | 8 | 0 | 1 | 270 | 1 | 270 | 0.0 | 545 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0863690 | G7K4D9 | 97.037 | 270 | 8 | 0 | 1 | 270 | 1 | 270 | 0.0 | 545 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0743600 | Msa0863690 | 0.810447 | 1.147565e-50 | -8.615850e-47 |
| Msa0787680 | Msa0863690 | 0.818895 | 1.543922e-52 | -8.615850e-47 |
| Msa0824540 | Msa0863690 | 0.830237 | 3.288269e-55 | -8.615850e-47 |
| Msa0863690 | Msa1018790 | 0.818451 | 1.947063e-52 | -8.615850e-47 |
| Msa0863690 | Msa1379570 | 0.801826 | 7.498082e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0863690 | MtrunA17_Chr5g0445321 | 97.283 | 184 | 5 | 0 | 87 | 270 | 1 | 184 | 1.77e-133 | 374 |
| Msa0863690 | MtrunA17_Chr3g0114991 | 32.536 | 209 | 126 | 5 | 74 | 269 | 243 | 449 | 1.20e-32 | 124 |
| Msa0863690 | MtrunA17_Chr1g0156521 | 33.981 | 206 | 119 | 6 | 74 | 269 | 201 | 399 | 4.67e-30 | 116 |
| Msa0863690 | MtrunA17_Chr4g0042091 | 34.783 | 207 | 121 | 5 | 74 | 268 | 230 | 434 | 7.66e-28 | 110 |
| Msa0863690 | MtrunA17_Chr3g0104431 | 31.646 | 237 | 127 | 11 | 61 | 270 | 160 | 388 | 1.72e-24 | 100 |
| Msa0863690 | MtrunA17_Chr8g0376191 | 33.136 | 169 | 95 | 7 | 113 | 269 | 2 | 164 | 1.05e-19 | 83.6 |
| Msa0863690 | MtrunA17_Chr2g0280501 | 28.986 | 207 | 123 | 6 | 80 | 269 | 176 | 375 | 1.04e-17 | 82.0 |
| Msa0863690 | MtrunA17_Chr2g0280521 | 35.455 | 110 | 65 | 2 | 79 | 184 | 11 | 118 | 3.23e-14 | 67.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0863690 | AT5G54630.1 | 36.574 | 216 | 112 | 8 | 74 | 268 | 258 | 469 | 3.82e-27 | 109 |
| Msa0863690 | AT4G27240.1 | 34.562 | 217 | 121 | 8 | 68 | 268 | 217 | 428 | 1.05e-25 | 105 |
| Msa0863690 | AT1G75710.1 | 31.169 | 231 | 120 | 8 | 74 | 269 | 231 | 457 | 2.54e-23 | 99.0 |
| Msa0863690 | AT4G27240.2 | 35.593 | 177 | 100 | 5 | 68 | 234 | 217 | 389 | 1.32e-22 | 96.7 |
| Msa0863690 | AT2G29660.1 | 29.596 | 223 | 126 | 8 | 74 | 269 | 153 | 371 | 1.05e-19 | 87.8 |
| Msa0863690 | AT1G11490.2 | 29.694 | 229 | 124 | 10 | 65 | 269 | 148 | 363 | 6.76e-16 | 77.0 |
| Msa0863690 | AT1G11490.1 | 29.694 | 229 | 124 | 10 | 65 | 269 | 148 | 363 | 6.76e-16 | 77.0 |
Find 44 sgRNAs with CRISPR-Local
Find 142 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTACTCCCTTTGCCAAATTT+TGG | 0.172903 | 5_4:+63716302 | None:intergenic |
| TTTCCATCTACTGTACTTCT+TGG | 0.258911 | 5_4:+63715449 | None:intergenic |
| ATAAGGCAGCCACCAAAATT+TGG | 0.275929 | 5_4:-63716314 | Msa0863690:CDS |
| GGAAAGTTAGAACAGTTCTA+AGG | 0.320437 | 5_4:-63715547 | Msa0863690:CDS |
| ACAAACTCACTGATGTAATA+AGG | 0.337481 | 5_4:-63716331 | Msa0863690:CDS |
| AACTTTCCTCAGTGGCTTTG+AGG | 0.349977 | 5_4:+63715562 | None:intergenic |
| AGATCATGAACTTTCTTCAT+AGG | 0.351902 | 5_4:+63715377 | None:intergenic |
| ACATTTGACATTGTCTTTCA+AGG | 0.372511 | 5_4:+63716358 | None:intergenic |
| ATAGTTTGCAGGATAATTGC+TGG | 0.375937 | 5_4:-63715206 | Msa0863690:CDS |
| AGCCGAGCCTGTGTGTTGTT+TGG | 0.410884 | 5_4:+63716185 | None:intergenic |
| AAACATTTAAAGCAGACAAA+AGG | 0.418695 | 5_4:+63716452 | None:intergenic |
| AGCCTGTGTGTTGTTTGGCT+TGG | 0.421270 | 5_4:+63716190 | None:intergenic |
| CATCCAAGAAGTACAGTAGA+TGG | 0.426400 | 5_4:-63715452 | Msa0863690:CDS |
| AGGAAGAAATGCAAGCCTTA+TGG | 0.429141 | 5_4:-63716385 | Msa0863690:exon |
| CTTTCTTCATAGGTTTCCCT+TGG | 0.432529 | 5_4:+63715387 | None:intergenic |
| ACTGTACTTCTTGGATGCCT+TGG | 0.453519 | 5_4:+63715458 | None:intergenic |
| ACAAACACACACAAATTAAG+AGG | 0.454752 | 5_4:-63716405 | Msa0863690:five_prime_UTR |
| GTCTTTCAAGGACAACCATA+AGG | 0.456733 | 5_4:+63716370 | None:intergenic |
| GAGTAGCTATGTTCTACAAA+AGG | 0.501056 | 5_4:-63716285 | Msa0863690:CDS |
| AACATTTAAAGCAGACAAAA+GGG | 0.510124 | 5_4:+63716453 | None:intergenic |
| AGCCACCAAAATTTGGCAAA+GGG | 0.512723 | 5_4:-63716307 | Msa0863690:CDS |
| AGATGATATTTCAGAAAGCA+TGG | 0.538196 | 5_4:-63715592 | Msa0863690:CDS |
| GAAAGTTAGAACAGTTCTAA+GGG | 0.550047 | 5_4:-63715546 | Msa0863690:CDS |
| CAGCCACCAAAATTTGGCAA+AGG | 0.555527 | 5_4:-63716308 | Msa0863690:CDS |
| TTGAAAGACAATGTCAAATG+TGG | 0.555657 | 5_4:-63716356 | Msa0863690:CDS |
| AAGTGAAGAAACAGTATCCA+AGG | 0.559280 | 5_4:-63715475 | Msa0863690:CDS |
| GTTCTGAGTGTGACTCAACT+AGG | 0.563240 | 5_4:-63715145 | Msa0863690:CDS |
| GAGTGTGACTCAACTAGGCT+AGG | 0.568204 | 5_4:-63715140 | Msa0863690:CDS |
| AGCCAAACAACACACAGGCT+CGG | 0.581716 | 5_4:-63716187 | Msa0863690:CDS |
| TTGAAAATTATGACAAAACA+AGG | 0.601697 | 5_4:+63715062 | None:intergenic |
| ACTGCAGTGAATGAAGTTGA+TGG | 0.605466 | 5_4:-63715182 | Msa0863690:CDS |
| TAGCTGGAATTTCCATGAGG+GGG | 0.606181 | 5_4:+63716225 | None:intergenic |
| TGTATGTGTATGTGCTCATG+TGG | 0.606339 | 5_4:+63716425 | None:intergenic |
| ACTACAATGAGATGTTTCCA+AGG | 0.610196 | 5_4:-63715404 | Msa0863690:CDS |
| AAACAAGGAAGAATAGAACT+AGG | 0.612460 | 5_4:+63715077 | None:intergenic |
| TCTAGCTGGAATTTCCATGA+GGG | 0.619119 | 5_4:+63716223 | None:intergenic |
| TTCCAAGCCAAACAACACAC+AGG | 0.628310 | 5_4:-63716192 | Msa0863690:CDS |
| ACTGTTCTAACTTTCCTCAG+TGG | 0.641903 | 5_4:+63715554 | None:intergenic |
| AGCTGGAATTTCCATGAGGG+GGG | 0.644140 | 5_4:+63716226 | None:intergenic |
| CTAGCTGGAATTTCCATGAG+GGG | 0.652167 | 5_4:+63716224 | None:intergenic |
| ACTTGACAAAATCGACACGA+TGG | 0.658301 | 5_4:+63715344 | None:intergenic |
| CTACAATGAGATGTTTCCAA+GGG | 0.668592 | 5_4:-63715403 | Msa0863690:CDS |
| GTCTAGCTGGAATTTCCATG+AGG | 0.668741 | 5_4:+63716222 | None:intergenic |
| TGAACACCTCAAAGCCACTG+AGG | 0.730072 | 5_4:-63715568 | Msa0863690:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATAAATGTAATTTAAAAG+AGG | + | chr5_4:63715380-63715399 | None:intergenic | 10.0% |
| !! | TTATAAATGTAATTTAAAAG+AGG | + | chr5_4:63715380-63715399 | None:intergenic | 10.0% |
| !! | TTCACATTTATTACATATAT+CGG | - | chr5_4:63715732-63715751 | Msa0863690:intron | 15.0% |
| !!! | ATTTACTATTGATTTTATGT+AGG | - | chr5_4:63715822-63715841 | Msa0863690:intron | 15.0% |
| !! | TTCACATTTATTACATATAT+CGG | - | chr5_4:63715732-63715751 | Msa0863690:intron | 15.0% |
| !!! | ATTTACTATTGATTTTATGT+AGG | - | chr5_4:63715822-63715841 | Msa0863690:intron | 15.0% |
| !!! | AAAAAGTTTTAATAGTTTGC+AGG | - | chr5_4:63716302-63716321 | Msa0863690:CDS | 20.0% |
| !! | TTGAAAATTATGACAAAACA+AGG | + | chr5_4:63716460-63716479 | None:intergenic | 20.0% |
| !!! | AAAAAGTTTTAATAGTTTGC+AGG | - | chr5_4:63716302-63716321 | Msa0863690:CDS | 20.0% |
| !! | TTGAAAATTATGACAAAACA+AGG | + | chr5_4:63716460-63716479 | None:intergenic | 20.0% |
| !! | AACATTTAAAGCAGACAAAA+GGG | + | chr5_4:63715069-63715088 | None:intergenic | 25.0% |
| !! | AAACATTTAAAGCAGACAAA+AGG | + | chr5_4:63715070-63715089 | None:intergenic | 25.0% |
| ! | TTGAAATGTAACAAGAGTTA+TGG | - | chr5_4:63715514-63715533 | Msa0863690:CDS | 25.0% |
| !!! | AAATAGTTTGCTACATTATG+TGG | + | chr5_4:63715552-63715571 | None:intergenic | 25.0% |
| !! | AAAGTGCTTATAAATAGTGA+CGG | + | chr5_4:63715713-63715732 | None:intergenic | 25.0% |
| !! | TCCTCTACATTGTTAAATTT+TGG | - | chr5_4:63715865-63715884 | Msa0863690:intron | 25.0% |
| !! | TCTCAACAATTTTTCTTGAA+GGG | + | chr5_4:63715910-63715929 | None:intergenic | 25.0% |
| !! | ATCTCAACAATTTTTCTTGA+AGG | + | chr5_4:63715911-63715930 | None:intergenic | 25.0% |
| !! | AACATTTAAAGCAGACAAAA+GGG | + | chr5_4:63715069-63715088 | None:intergenic | 25.0% |
| !! | AAACATTTAAAGCAGACAAA+AGG | + | chr5_4:63715070-63715089 | None:intergenic | 25.0% |
| ! | TTGAAATGTAACAAGAGTTA+TGG | - | chr5_4:63715514-63715533 | Msa0863690:CDS | 25.0% |
| !!! | AAATAGTTTGCTACATTATG+TGG | + | chr5_4:63715552-63715571 | None:intergenic | 25.0% |
| !! | AAAGTGCTTATAAATAGTGA+CGG | + | chr5_4:63715713-63715732 | None:intergenic | 25.0% |
| !! | TCCTCTACATTGTTAAATTT+TGG | - | chr5_4:63715865-63715884 | Msa0863690:intron | 25.0% |
| !! | TCTCAACAATTTTTCTTGAA+GGG | + | chr5_4:63715910-63715929 | None:intergenic | 25.0% |
| !! | ATCTCAACAATTTTTCTTGA+AGG | + | chr5_4:63715911-63715930 | None:intergenic | 25.0% |
| ACAAACACACACAAATTAAG+AGG | - | chr5_4:63715114-63715133 | Msa0863690:CDS | 30.0% | |
| ACATTTGACATTGTCTTTCA+AGG | + | chr5_4:63715164-63715183 | None:intergenic | 30.0% | |
| TTGAAAGACAATGTCAAATG+TGG | - | chr5_4:63715163-63715182 | Msa0863690:CDS | 30.0% | |
| ACAAACTCACTGATGTAATA+AGG | - | chr5_4:63715188-63715207 | Msa0863690:CDS | 30.0% | |
| TATGTTGTGTTCATGCATAT+AGG | + | chr5_4:63715471-63715490 | None:intergenic | 30.0% | |
| CATCAAAAACTTGACATCTA+CGG | + | chr5_4:63715648-63715667 | None:intergenic | 30.0% | |
| GCCAAAATTTAACAATGTAG+AGG | + | chr5_4:63715869-63715888 | None:intergenic | 30.0% | |
| AGATGATATTTCAGAAAGCA+TGG | - | chr5_4:63715927-63715946 | Msa0863690:intron | 30.0% | |
| ! | GAAAGTTAGAACAGTTCTAA+GGG | - | chr5_4:63715973-63715992 | Msa0863690:intron | 30.0% |
| AGATCATGAACTTTCTTCAT+AGG | + | chr5_4:63716145-63716164 | None:intergenic | 30.0% | |
| AAACAAGGAAGAATAGAACT+AGG | + | chr5_4:63716445-63716464 | None:intergenic | 30.0% | |
| ACAAACACACACAAATTAAG+AGG | - | chr5_4:63715114-63715133 | Msa0863690:CDS | 30.0% | |
| ACATTTGACATTGTCTTTCA+AGG | + | chr5_4:63715164-63715183 | None:intergenic | 30.0% | |
| TTGAAAGACAATGTCAAATG+TGG | - | chr5_4:63715163-63715182 | Msa0863690:CDS | 30.0% | |
| ACAAACTCACTGATGTAATA+AGG | - | chr5_4:63715188-63715207 | Msa0863690:CDS | 30.0% | |
| TATGTTGTGTTCATGCATAT+AGG | + | chr5_4:63715471-63715490 | None:intergenic | 30.0% | |
| CATCAAAAACTTGACATCTA+CGG | + | chr5_4:63715648-63715667 | None:intergenic | 30.0% | |
| GCCAAAATTTAACAATGTAG+AGG | + | chr5_4:63715869-63715888 | None:intergenic | 30.0% | |
| AGATGATATTTCAGAAAGCA+TGG | - | chr5_4:63715927-63715946 | Msa0863690:intron | 30.0% | |
| ! | GAAAGTTAGAACAGTTCTAA+GGG | - | chr5_4:63715973-63715992 | Msa0863690:intron | 30.0% |
| AGATCATGAACTTTCTTCAT+AGG | + | chr5_4:63716145-63716164 | None:intergenic | 30.0% | |
| AAACAAGGAAGAATAGAACT+AGG | + | chr5_4:63716445-63716464 | None:intergenic | 30.0% | |
| GAGTAGCTATGTTCTACAAA+AGG | - | chr5_4:63715234-63715253 | Msa0863690:CDS | 35.0% | |
| ! | TTGGAAAAAACTAGTCTAGC+TGG | + | chr5_4:63715313-63715332 | None:intergenic | 35.0% |
| TTCTTACTACTGAACTCCTT+TGG | - | chr5_4:63715430-63715449 | Msa0863690:CDS | 35.0% | |
| ! | CAGTATCAAACTTGTTTCCA+TGG | - | chr5_4:63715602-63715621 | Msa0863690:CDS | 35.0% |
| !! | TGTTAAATTTTGGCAGAGCT+TGG | - | chr5_4:63715875-63715894 | Msa0863690:intron | 35.0% |
| GGAAAGTTAGAACAGTTCTA+AGG | - | chr5_4:63715972-63715991 | Msa0863690:intron | 35.0% | |
| AAGTGAAGAAACAGTATCCA+AGG | - | chr5_4:63716044-63716063 | Msa0863690:intron | 35.0% | |
| TTTCCATCTACTGTACTTCT+TGG | + | chr5_4:63716073-63716092 | None:intergenic | 35.0% | |
| ACTACAATGAGATGTTTCCA+AGG | - | chr5_4:63716115-63716134 | Msa0863690:intron | 35.0% | |
| CTACAATGAGATGTTTCCAA+GGG | - | chr5_4:63716116-63716135 | Msa0863690:intron | 35.0% | |
| ! | ATAGTTTGCAGGATAATTGC+TGG | - | chr5_4:63716313-63716332 | Msa0863690:CDS | 35.0% |
| GAGTAGCTATGTTCTACAAA+AGG | - | chr5_4:63715234-63715253 | Msa0863690:CDS | 35.0% | |
| ! | TTGGAAAAAACTAGTCTAGC+TGG | + | chr5_4:63715313-63715332 | None:intergenic | 35.0% |
| TTCTTACTACTGAACTCCTT+TGG | - | chr5_4:63715430-63715449 | Msa0863690:CDS | 35.0% | |
| ! | CAGTATCAAACTTGTTTCCA+TGG | - | chr5_4:63715602-63715621 | Msa0863690:CDS | 35.0% |
| !! | TGTTAAATTTTGGCAGAGCT+TGG | - | chr5_4:63715875-63715894 | Msa0863690:intron | 35.0% |
| GGAAAGTTAGAACAGTTCTA+AGG | - | chr5_4:63715972-63715991 | Msa0863690:intron | 35.0% | |
| AAGTGAAGAAACAGTATCCA+AGG | - | chr5_4:63716044-63716063 | Msa0863690:intron | 35.0% | |
| TTTCCATCTACTGTACTTCT+TGG | + | chr5_4:63716073-63716092 | None:intergenic | 35.0% | |
| ACTACAATGAGATGTTTCCA+AGG | - | chr5_4:63716115-63716134 | Msa0863690:intron | 35.0% | |
| CTACAATGAGATGTTTCCAA+GGG | - | chr5_4:63716116-63716135 | Msa0863690:intron | 35.0% | |
| ! | ATAGTTTGCAGGATAATTGC+TGG | - | chr5_4:63716313-63716332 | Msa0863690:CDS | 35.0% |
| TGTATGTGTATGTGCTCATG+TGG | + | chr5_4:63715097-63715116 | None:intergenic | 40.0% | |
| AGGAAGAAATGCAAGCCTTA+TGG | - | chr5_4:63715134-63715153 | Msa0863690:CDS | 40.0% | |
| GTCTTTCAAGGACAACCATA+AGG | + | chr5_4:63715152-63715171 | None:intergenic | 40.0% | |
| ATAAGGCAGCCACCAAAATT+TGG | - | chr5_4:63715205-63715224 | Msa0863690:CDS | 40.0% | |
| AGCCACCAAAATTTGGCAAA+GGG | - | chr5_4:63715212-63715231 | Msa0863690:CDS | 40.0% | |
| ! | CTACTCCCTTTGCCAAATTT+TGG | + | chr5_4:63715220-63715239 | None:intergenic | 40.0% |
| TCTAGCTGGAATTTCCATGA+GGG | + | chr5_4:63715299-63715318 | None:intergenic | 40.0% | |
| GAGCAACAAACTCTTTCCAA+AGG | + | chr5_4:63715449-63715468 | None:intergenic | 40.0% | |
| AATCGCGGTCTAATTCAATG+TGG | + | chr5_4:63715680-63715699 | None:intergenic | 40.0% | |
| GTGCTTATAAATAGTGACGG+AGG | + | chr5_4:63715710-63715729 | None:intergenic | 40.0% | |
| !! | ATTTTGGCAGAGCTTGGTAT+TGG | - | chr5_4:63715881-63715900 | Msa0863690:intron | 40.0% |
| ACTGTTCTAACTTTCCTCAG+TGG | + | chr5_4:63715968-63715987 | None:intergenic | 40.0% | |
| ! | CATCCAAGAAGTACAGTAGA+TGG | - | chr5_4:63716067-63716086 | Msa0863690:intron | 40.0% |
| CTTTCTTCATAGGTTTCCCT+TGG | + | chr5_4:63716135-63716154 | None:intergenic | 40.0% | |
| ACTTGACAAAATCGACACGA+TGG | + | chr5_4:63716178-63716197 | None:intergenic | 40.0% | |
| ACTGCAGTGAATGAAGTTGA+TGG | - | chr5_4:63716337-63716356 | Msa0863690:CDS | 40.0% | |
| TGTATGTGTATGTGCTCATG+TGG | + | chr5_4:63715097-63715116 | None:intergenic | 40.0% | |
| AGGAAGAAATGCAAGCCTTA+TGG | - | chr5_4:63715134-63715153 | Msa0863690:CDS | 40.0% | |
| GTCTTTCAAGGACAACCATA+AGG | + | chr5_4:63715152-63715171 | None:intergenic | 40.0% | |
| ATAAGGCAGCCACCAAAATT+TGG | - | chr5_4:63715205-63715224 | Msa0863690:CDS | 40.0% | |
| AGCCACCAAAATTTGGCAAA+GGG | - | chr5_4:63715212-63715231 | Msa0863690:CDS | 40.0% | |
| ! | CTACTCCCTTTGCCAAATTT+TGG | + | chr5_4:63715220-63715239 | None:intergenic | 40.0% |
| TCTAGCTGGAATTTCCATGA+GGG | + | chr5_4:63715299-63715318 | None:intergenic | 40.0% | |
| GAGCAACAAACTCTTTCCAA+AGG | + | chr5_4:63715449-63715468 | None:intergenic | 40.0% | |
| AATCGCGGTCTAATTCAATG+TGG | + | chr5_4:63715680-63715699 | None:intergenic | 40.0% | |
| GTGCTTATAAATAGTGACGG+AGG | + | chr5_4:63715710-63715729 | None:intergenic | 40.0% | |
| !! | ATTTTGGCAGAGCTTGGTAT+TGG | - | chr5_4:63715881-63715900 | Msa0863690:intron | 40.0% |
| ACTGTTCTAACTTTCCTCAG+TGG | + | chr5_4:63715968-63715987 | None:intergenic | 40.0% | |
| ! | CATCCAAGAAGTACAGTAGA+TGG | - | chr5_4:63716067-63716086 | Msa0863690:intron | 40.0% |
| CTTTCTTCATAGGTTTCCCT+TGG | + | chr5_4:63716135-63716154 | None:intergenic | 40.0% | |
| ACTTGACAAAATCGACACGA+TGG | + | chr5_4:63716178-63716197 | None:intergenic | 40.0% | |
| ACTGCAGTGAATGAAGTTGA+TGG | - | chr5_4:63716337-63716356 | Msa0863690:CDS | 40.0% | |
| CAGCCACCAAAATTTGGCAA+AGG | - | chr5_4:63715211-63715230 | Msa0863690:CDS | 45.0% | |
| ! | CTCCCTTTGCCAAATTTTGG+TGG | + | chr5_4:63715217-63715236 | None:intergenic | 45.0% |
| AGAAGATAATACCCCCCTCA+TGG | - | chr5_4:63715282-63715301 | Msa0863690:CDS | 45.0% | |
| TAGCTGGAATTTCCATGAGG+GGG | + | chr5_4:63715297-63715316 | None:intergenic | 45.0% | |
| CTAGCTGGAATTTCCATGAG+GGG | + | chr5_4:63715298-63715317 | None:intergenic | 45.0% | |
| GTCTAGCTGGAATTTCCATG+AGG | + | chr5_4:63715300-63715319 | None:intergenic | 45.0% | |
| TTCCAAGCCAAACAACACAC+AGG | - | chr5_4:63715327-63715346 | Msa0863690:CDS | 45.0% | |
| CAGACACTTCGTTAGATCCA+TGG | + | chr5_4:63715622-63715641 | None:intergenic | 45.0% | |
| GACGGAGGAGAAAAAAATCG+CGG | + | chr5_4:63715695-63715714 | None:intergenic | 45.0% | |
| ! | AACTTTCCTCAGTGGCTTTG+AGG | + | chr5_4:63715960-63715979 | None:intergenic | 45.0% |
| ACTGTACTTCTTGGATGCCT+TGG | + | chr5_4:63716064-63716083 | None:intergenic | 45.0% | |
| !! | CAATTTTGACGCGAAACACG+CGG | - | chr5_4:63716207-63716226 | Msa0863690:CDS | 45.0% |
| ! | GTTCTGAGTGTGACTCAACT+AGG | - | chr5_4:63716374-63716393 | Msa0863690:CDS | 45.0% |
| CAGCCACCAAAATTTGGCAA+AGG | - | chr5_4:63715211-63715230 | Msa0863690:CDS | 45.0% | |
| ! | CTCCCTTTGCCAAATTTTGG+TGG | + | chr5_4:63715217-63715236 | None:intergenic | 45.0% |
| AGAAGATAATACCCCCCTCA+TGG | - | chr5_4:63715282-63715301 | Msa0863690:CDS | 45.0% | |
| TAGCTGGAATTTCCATGAGG+GGG | + | chr5_4:63715297-63715316 | None:intergenic | 45.0% | |
| CTAGCTGGAATTTCCATGAG+GGG | + | chr5_4:63715298-63715317 | None:intergenic | 45.0% | |
| GTCTAGCTGGAATTTCCATG+AGG | + | chr5_4:63715300-63715319 | None:intergenic | 45.0% | |
| TTCCAAGCCAAACAACACAC+AGG | - | chr5_4:63715327-63715346 | Msa0863690:CDS | 45.0% | |
| CAGACACTTCGTTAGATCCA+TGG | + | chr5_4:63715622-63715641 | None:intergenic | 45.0% | |
| GACGGAGGAGAAAAAAATCG+CGG | + | chr5_4:63715695-63715714 | None:intergenic | 45.0% | |
| ! | AACTTTCCTCAGTGGCTTTG+AGG | + | chr5_4:63715960-63715979 | None:intergenic | 45.0% |
| ACTGTACTTCTTGGATGCCT+TGG | + | chr5_4:63716064-63716083 | None:intergenic | 45.0% | |
| !! | CAATTTTGACGCGAAACACG+CGG | - | chr5_4:63716207-63716226 | Msa0863690:CDS | 45.0% |
| ! | GTTCTGAGTGTGACTCAACT+AGG | - | chr5_4:63716374-63716393 | Msa0863690:CDS | 45.0% |
| AGCTGGAATTTCCATGAGGG+GGG | + | chr5_4:63715296-63715315 | None:intergenic | 50.0% | |
| !! | AGCCTGTGTGTTGTTTGGCT+TGG | + | chr5_4:63715332-63715351 | None:intergenic | 50.0% |
| AGCCAAACAACACACAGGCT+CGG | - | chr5_4:63715332-63715351 | Msa0863690:CDS | 50.0% | |
| ! | AACACACAGGCTCGGCTTTT+CGG | - | chr5_4:63715340-63715359 | Msa0863690:CDS | 50.0% |
| TGAACACCTCAAAGCCACTG+AGG | - | chr5_4:63715951-63715970 | Msa0863690:intron | 50.0% | |
| GAGTGTGACTCAACTAGGCT+AGG | - | chr5_4:63716379-63716398 | Msa0863690:CDS | 50.0% | |
| AGCTGGAATTTCCATGAGGG+GGG | + | chr5_4:63715296-63715315 | None:intergenic | 50.0% | |
| !! | AGCCTGTGTGTTGTTTGGCT+TGG | + | chr5_4:63715332-63715351 | None:intergenic | 50.0% |
| AGCCAAACAACACACAGGCT+CGG | - | chr5_4:63715332-63715351 | Msa0863690:CDS | 50.0% | |
| ! | AACACACAGGCTCGGCTTTT+CGG | - | chr5_4:63715340-63715359 | Msa0863690:CDS | 50.0% |
| TGAACACCTCAAAGCCACTG+AGG | - | chr5_4:63715951-63715970 | Msa0863690:intron | 50.0% | |
| GAGTGTGACTCAACTAGGCT+AGG | - | chr5_4:63716379-63716398 | Msa0863690:CDS | 50.0% | |
| ! | AGCCGAGCCTGTGTGTTGTT+TGG | + | chr5_4:63715337-63715356 | None:intergenic | 55.0% |
| ! | AGCCGAGCCTGTGTGTTGTT+TGG | + | chr5_4:63715337-63715356 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 63715058 | 63716483 | 63715058 | ID=Msa0863690;Name=Msa0863690 |
| chr5_4 | mRNA | 63715058 | 63716483 | 63715058 | ID=Msa0863690-mRNA-1;Parent=Msa0863690;Name=Msa0863690-mRNA-1;_AED=0.01;_eAED=0.01;_QI=84|1|0.5|1|1|1|2|0|270 |
| chr5_4 | exon | 63715058 | 63715650 | 63715058 | ID=Msa0863690-mRNA-1:exon:20040;Parent=Msa0863690-mRNA-1 |
| chr5_4 | exon | 63716180 | 63716483 | 63716180 | ID=Msa0863690-mRNA-1:exon:20039;Parent=Msa0863690-mRNA-1 |
| chr5_4 | five_prime_UTR | 63716400 | 63716483 | 63716400 | ID=Msa0863690-mRNA-1:five_prime_utr;Parent=Msa0863690-mRNA-1 |
| chr5_4 | CDS | 63716180 | 63716399 | 63716180 | ID=Msa0863690-mRNA-1:cds;Parent=Msa0863690-mRNA-1 |
| chr5_4 | CDS | 63715058 | 63715650 | 63715058 | ID=Msa0863690-mRNA-1:cds;Parent=Msa0863690-mRNA-1 |
| Gene Sequence |
| Protein sequence |
