AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0744060

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0744060 MtrunA17_Chr5g0447021 84.539 304 15 2 1 272 1 304 0.0 499
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0744060 AT3G13226.1 57.025 121 50 1 147 265 257 377 1.50e-46 160

Find 84 sgRNAs with CRISPR-Local

Find 392 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTTCCTACGGCACAAATTT+TGG 0.150016 5_1:+64715217 Msa0744060:five_prime_UTR
AAGATAAATGATGGGAAAAT+TGG 0.155313 5_1:+64716033 Msa0744060:CDS
TCAGATTAGTATATGAAATT+TGG 0.168690 5_1:-64721292 None:intergenic
ACATCAAACATGATGGTTTA+TGG 0.207166 5_1:-64721332 None:intergenic
ATTCTAATAATGGCTTTAAT+TGG 0.213951 5_1:-64721695 None:intergenic
GGAGAAGAGAAGTCAATTAT+TGG 0.244523 5_1:+64721066 Msa0744060:CDS
TTAGTTCGTGTGTTGGTGTT+AGG 0.315723 5_1:+64715935 Msa0744060:CDS
TTAGGAACATTTGGAAGTTT+CGG 0.323492 5_1:+64715887 Msa0744060:intron
GTATGAACTTCATCTGGATT+TGG 0.326325 5_1:-64716087 None:intergenic
CTTGATTTCCTTGTCTCCTT+CGG 0.343399 5_1:-64721159 None:intergenic
AAGGACAACAATGATTGTTC+TGG 0.357621 5_1:+64721045 Msa0744060:CDS
ACCTTTGAACCACTGCTTTG+AGG 0.360986 5_1:-64721127 None:intergenic
TTGTGTGCTAAAATGCATTA+TGG 0.367738 5_1:-64721455 None:intergenic
GAAGCTGTAAATTCTAATAA+TGG 0.371256 5_1:-64721705 None:intergenic
GGTTGGAGATTCTTGTGAAC+AGG 0.371729 5_1:+64717500 Msa0744060:CDS
CTAGATGGTCTTCGTCTACT+TGG 0.373265 5_1:+64720578 Msa0744060:CDS
AGCCGATTGTTCAGCATCAT+TGG 0.373844 5_1:-64717547 None:intergenic
CATTGATCATCTTTATGTTC+AGG 0.374786 5_1:+64721104 Msa0744060:CDS
TTCACCCTGCATGATGTGTT+AGG 0.382312 5_1:-64715964 None:intergenic
TCAGAGGGTTCATCAATGAT+AGG 0.382601 5_1:+64720530 Msa0744060:intron
AAATTGAAATTAGGAACATT+TGG 0.383207 5_1:+64715878 Msa0744060:intron
CAAAGCTACAATACTCCAAA+TGG 0.386271 5_1:-64715993 None:intergenic
AATCCTCCATAGTGCACAAC+TGG 0.386999 5_1:+64721264 Msa0744060:exon
CTGTCAAATTACTTGCATCT+AGG 0.394839 5_1:+64717568 Msa0744060:CDS
CAGGGTGAAAATTCCCCATT+TGG 0.401072 5_1:+64715978 Msa0744060:CDS
AACTCAGTATGAACTTCATC+TGG 0.406135 5_1:-64716093 None:intergenic
CTTACCTGTTTGATCCGTCT+TGG 0.409978 5_1:-64720604 None:intergenic
TATTTGTATAGTGTGTATTA+TGG 0.411829 5_1:+64721359 Msa0744060:three_prime_UTR
TGTATAGTGTGTATTATGGT+AGG 0.423481 5_1:+64721363 Msa0744060:three_prime_UTR
AGATAAATGATGGGAAAATT+GGG 0.425380 5_1:+64716034 Msa0744060:CDS
CCAAAATTTGTGCCGTAGGA+AGG 0.431418 5_1:-64715217 None:intergenic
GATTCTAGGTTCTGAACAAA+TGG 0.438649 5_1:+64717473 Msa0744060:intron
TCATAGTAAACAAACTAGAT+AGG 0.439290 5_1:+64721232 Msa0744060:CDS
CTCTTTGATGATAGTGAAGA+AGG 0.444371 5_1:+64716117 Msa0744060:CDS
TAGATGGTCTTCGTCTACTT+GGG 0.452942 5_1:+64720579 Msa0744060:CDS
ATACTAATCTGAAATCCATT+TGG 0.458570 5_1:+64721303 Msa0744060:three_prime_UTR
AAAGCTACAATACTCCAAAT+GGG 0.474481 5_1:-64715992 None:intergenic
TACCAATGATGCTGAACAAT+CGG 0.477064 5_1:+64717545 Msa0744060:CDS
AATCATATTCTCAATCTAGA+TGG 0.477303 5_1:+64720563 Msa0744060:CDS
AGTGTAATCAAGATAAATGA+TGG 0.484873 5_1:+64716024 Msa0744060:CDS
GGGGCCAAGACGGATCAAAC+AGG 0.494987 5_1:+64720600 Msa0744060:CDS
CAAAATTTGTGCCGTAGGAA+GGG 0.500964 5_1:-64715216 None:intergenic
GGTTTATGGACCCCACCAAA+TGG 0.501768 5_1:-64721318 None:intergenic
TAAAGCAGAAAGCGCCACTT+AGG 0.502711 5_1:+64721542 Msa0744060:three_prime_UTR
GATGTCCCAGTTGTGCACTA+TGG 0.504111 5_1:-64721270 None:intergenic
CGAAGGAGACAAGGAAATCA+AGG 0.508111 5_1:+64721160 Msa0744060:CDS
GCCTCAAAGCAGTGGTTCAA+AGG 0.522041 5_1:+64721126 Msa0744060:CDS
TCCATTGTCTCATAATGCTA+TGG 0.534356 5_1:+64721390 Msa0744060:three_prime_UTR
TGATGTAAACAATTGATGTA+AGG 0.534501 5_1:+64721622 Msa0744060:three_prime_UTR
AGAGACTTTAGTTCGTGTGT+TGG 0.535118 5_1:+64715928 Msa0744060:CDS
AGAAGTTTAGCGGGAAACAT+TGG 0.537917 5_1:+64715256 Msa0744060:CDS
CTAATCTGAAATCCATTTGG+TGG 0.545030 5_1:+64721306 Msa0744060:three_prime_UTR
TAATCTGAAATCCATTTGGT+GGG 0.546158 5_1:+64721307 Msa0744060:three_prime_UTR
AGATGGTCTTCGTCTACTTG+GGG 0.547146 5_1:+64720580 Msa0744060:CDS
CTGAACATAAAGATGATCAA+TGG 0.547886 5_1:-64721103 None:intergenic
AGGTTCTGAACAAATGGAAG+AGG 0.550123 5_1:+64717479 Msa0744060:intron
AAATAGTAGCATCTCCTAAG+TGG 0.553438 5_1:-64721556 None:intergenic
TCTGAACAAATGGAAGAGGT+TGG 0.556064 5_1:+64717483 Msa0744060:CDS
TGGCAGGCACTGTTCAAGAA+AGG 0.558497 5_1:+64720979 Msa0744060:intron
AACATGGCAAGAAGTTTAGC+GGG 0.560092 5_1:+64715247 Msa0744060:CDS
ACATTCCTAACACATCATGC+AGG 0.560654 5_1:+64715959 Msa0744060:CDS
GTAACCAAAATTTGTGCCGT+AGG 0.564041 5_1:-64715221 None:intergenic
GGAAATCAAGGATTATTCGA+TGG 0.569098 5_1:+64721172 Msa0744060:CDS
ATGTTCAGGCCTCAAAGCAG+TGG 0.582693 5_1:+64721118 Msa0744060:CDS
GAGTATTGTAGCTTTGCTGA+TGG 0.583649 5_1:+64716000 Msa0744060:CDS
ATTCGATGGCTTCAATATCG+TGG 0.583859 5_1:+64721186 Msa0744060:CDS
ATACAATACATCAAACATGA+TGG 0.584204 5_1:-64721339 None:intergenic
TTCGGATTGAATGCTTCAAG+AGG 0.601314 5_1:+64715905 Msa0744060:CDS
GTCCCAGTTGTGCACTATGG+AGG 0.603930 5_1:-64721267 None:intergenic
GAACATGGCAAGAAGTTTAG+CGG 0.604379 5_1:+64715246 Msa0744060:CDS
AGAATGTTCCGAAGGAGACA+AGG 0.604609 5_1:+64721151 Msa0744060:CDS
GTATAGTGTGTATTATGGTA+GGG 0.608986 5_1:+64721364 Msa0744060:three_prime_UTR
GTGTAATCAAGATAAATGAT+GGG 0.609791 5_1:+64716025 Msa0744060:CDS
AGCTTCTAGAACTGTATGAG+TGG 0.616567 5_1:+64721722 Msa0744060:three_prime_UTR
GAGTGGCATTGATGATGTCA+TGG 0.618071 5_1:+64721739 Msa0744060:three_prime_UTR
GCCATAGCATTATGAGACAA+TGG 0.627440 5_1:-64721391 None:intergenic
ATCCTCCATAGTGCACAACT+GGG 0.630222 5_1:+64721265 Msa0744060:exon
AATCTGAAATCCATTTGGTG+GGG 0.639576 5_1:+64721308 Msa0744060:three_prime_UTR
CAAAGGTCAGAATGTTCCGA+AGG 0.644420 5_1:+64721143 Msa0744060:CDS
AGAGTAAGAGACCCTTCCTA+CGG 0.648785 5_1:+64715205 Msa0744060:five_prime_UTR
GATGGTCTTCGTCTACTTGG+GGG 0.660488 5_1:+64720581 Msa0744060:CDS
CATTCCTAACACATCATGCA+GGG 0.662603 5_1:+64715960 Msa0744060:CDS
AAGCTACAATACTCCAAATG+GGG 0.674118 5_1:-64715991 None:intergenic
TTTGGAGAAGTTTCACAATG+CGG 0.677880 5_1:-64716069 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATTATTGAAATTGAAATT+AGG + chr5_1:64715869-64715888 Msa0744060:intron 10.0%
!!! TAAAATTTTAAAAGGTAAAT+TGG - chr5_1:64717282-64717301 None:intergenic 10.0%
!!! CATAATTTTTTTGAGATAAA+TGG - chr5_1:64715352-64715371 None:intergenic 15.0%
!!! TTTCAGCTTTTAATTAATAA+CGG + chr5_1:64715548-64715567 Msa0744060:intron 15.0%
!!! ACAAAAATTTGATAATGTTA+TGG + chr5_1:64717102-64717121 Msa0744060:intron 15.0%
!!! CAAAAATTTGATAATGTTAT+GGG + chr5_1:64717103-64717122 Msa0744060:intron 15.0%
!!! AAAAATTTGATAATGTTATG+GGG + chr5_1:64717104-64717123 Msa0744060:intron 15.0%
!!! CTTAATGCTAAAATTTTAAA+AGG - chr5_1:64717290-64717309 None:intergenic 15.0%
!!! AAAATACAATGGATTTTTTA+AGG - chr5_1:64717922-64717941 None:intergenic 15.0%
!! AATTTCAGAAAAAAATACAA+TGG - chr5_1:64717933-64717952 None:intergenic 15.0%
!!! GTTACATTATTTATTTTACT+GGG - chr5_1:64718637-64718656 None:intergenic 15.0%
!!! TGTTACATTATTTATTTTAC+TGG - chr5_1:64718638-64718657 None:intergenic 15.0%
!! AATATTCAACATGATTATAA+GGG - chr5_1:64718840-64718859 None:intergenic 15.0%
!! TCTAGAAAATTATTAAGATT+TGG - chr5_1:64719244-64719263 None:intergenic 15.0%
!!! ATTCTTATATTTGTTGAAAA+AGG - chr5_1:64719457-64719476 None:intergenic 15.0%
!!! TACAAATAATGCTTATTTTT+AGG - chr5_1:64719506-64719525 None:intergenic 15.0%
!! AGACAATAATACTATATAAA+CGG + chr5_1:64719666-64719685 Msa0744060:intron 15.0%
!!! ACTAGATATATATCTAATTT+TGG + chr5_1:64719694-64719713 Msa0744060:intron 15.0%
!!! CTAGATATATATCTAATTTT+GGG + chr5_1:64719695-64719714 Msa0744060:intron 15.0%
!!! TGAATTTTAATACATTCTTT+GGG + chr5_1:64720472-64720491 Msa0744060:intron 15.0%
!!! ATTTTAACTTATGTAGTATT+AGG + chr5_1:64720726-64720745 Msa0744060:intron 15.0%
!! ATATAAAATAGTAGTTACCT+GGG - chr5_1:64715325-64715344 None:intergenic 20.0%
!! TATATAAAATAGTAGTTACC+TGG - chr5_1:64715326-64715345 None:intergenic 20.0%
!! AAATAAGTTGTTTATCCAAA+CGG + chr5_1:64715772-64715791 Msa0744060:intron 20.0%
!! GACAAAAACATTACAAAATA+TGG - chr5_1:64715800-64715819 None:intergenic 20.0%
!! AAATTGAAATTAGGAACATT+TGG + chr5_1:64715878-64715897 Msa0744060:intron 20.0%
!! ATAAAATAGAATGATGTCAT+AGG - chr5_1:64716265-64716284 None:intergenic 20.0%
!! AAGCATCAAATTTAATTACA+AGG - chr5_1:64716560-64716579 None:intergenic 20.0%
!! TTGTAATTAAATTTGATGCT+TGG + chr5_1:64716559-64716578 Msa0744060:intron 20.0%
!!! TTTTGTATATGTATAAAGAC+TGG + chr5_1:64716984-64717003 Msa0744060:intron 20.0%
!! ATTCAACTTATCAAATACAA+TGG - chr5_1:64717067-64717086 None:intergenic 20.0%
!!! AAAATTTGATAATGTTATGG+GGG + chr5_1:64717105-64717124 Msa0744060:intron 20.0%
!! ATCCTAGATATTAATGATTA+AGG - chr5_1:64717207-64717226 None:intergenic 20.0%
!! TTAATCATTAATATCTAGGA+TGG + chr5_1:64717206-64717225 Msa0744060:intron 20.0%
!! TGGAATGAATTATAACTATT+TGG + chr5_1:64718013-64718032 Msa0744060:intron 20.0%
!! TATCAAAACATTTAATTACC+TGG + chr5_1:64718073-64718092 Msa0744060:intron 20.0%
!! AAAGATATACAAAGAAATGT+AGG - chr5_1:64718304-64718323 None:intergenic 20.0%
!! TACATTTCTTTGTATATCTT+TGG + chr5_1:64718303-64718322 Msa0744060:intron 20.0%
!!! TTATTTGAACAACCATTTTT+GGG - chr5_1:64718345-64718364 None:intergenic 20.0%
!! TAACTTCATATCAAAATTGT+TGG + chr5_1:64718571-64718590 Msa0744060:intron 20.0%
!!! AAATATTGTTAGAGTTTGTT+AGG - chr5_1:64718787-64718806 None:intergenic 20.0%
!! ATATTCAACATGATTATAAG+GGG - chr5_1:64718839-64718858 None:intergenic 20.0%
!! GAATATTCAACATGATTATA+AGG - chr5_1:64718841-64718860 None:intergenic 20.0%
!!! ATCCAGAAATTTTAATAAGT+GGG + chr5_1:64719081-64719100 Msa0744060:intron 20.0%
!! GACAATAATACTATATAAAC+GGG + chr5_1:64719667-64719686 Msa0744060:intron 20.0%
!! TTAAAAATACAATACACATG+TGG + chr5_1:64719718-64719737 Msa0744060:intron 20.0%
!!! ACCTTTATAAGATTTTTAAC+TGG + chr5_1:64720021-64720040 Msa0744060:intron 20.0%
!!! CCTTTATAAGATTTTTAACT+GGG + chr5_1:64720022-64720041 Msa0744060:intron 20.0%
!! ATGTAAACTTTCGAAAAATT+TGG - chr5_1:64720256-64720275 None:intergenic 20.0%
!! ATATTCATACATGATCAAAT+TGG - chr5_1:64720282-64720301 None:intergenic 20.0%
!! AATTTAATTCTTGACTGATT+CGG + chr5_1:64720348-64720367 Msa0744060:intron 20.0%
!!! CTGAATTTTAATACATTCTT+TGG + chr5_1:64720471-64720490 Msa0744060:intron 20.0%
!! TGATAATAATAGCAAGTATA+TGG - chr5_1:64720922-64720941 None:intergenic 20.0%
!! TCAGATTAGTATATGAAATT+TGG - chr5_1:64721295-64721314 None:intergenic 20.0%
!! TATTTGTATAGTGTGTATTA+TGG + chr5_1:64721359-64721378 Msa0744060:three_prime_UTR 20.0%
!!! ATTCTAATAATGGCTTTAAT+TGG - chr5_1:64721698-64721717 None:intergenic 20.0%
!!! AAATTTTGGTTACATGAACA+TGG + chr5_1:64715231-64715250 Msa0744060:exon 25.0%
! TATAAAATAGTAGTTACCTG+GGG - chr5_1:64715324-64715343 None:intergenic 25.0%
! TTCAACTATAGCAAACAAAT+GGG - chr5_1:64715376-64715395 None:intergenic 25.0%
! TTTCAACTATAGCAAACAAA+TGG - chr5_1:64715377-64715396 None:intergenic 25.0%
!! AATCAAACTTTTCAGTGATT+TGG - chr5_1:64715402-64715421 None:intergenic 25.0%
! TTCTAATTTAGATACCCAAT+TGG + chr5_1:64715449-64715468 Msa0744060:intron 25.0%
! ATATTACAATGCAACCAATT+GGG - chr5_1:64715590-64715609 None:intergenic 25.0%
! AATTGGTTGCATTGTAATAT+GGG + chr5_1:64715590-64715609 Msa0744060:intron 25.0%
! AATAAGTTGTTTATCCAAAC+GGG + chr5_1:64715773-64715792 Msa0744060:intron 25.0%
!! TCATGATTCCATAATGTTTT+TGG + chr5_1:64715818-64715837 Msa0744060:intron 25.0%
! AATCATGACCAAAAACATTA+TGG - chr5_1:64715829-64715848 None:intergenic 25.0%
! AGTGTAATCAAGATAAATGA+TGG + chr5_1:64716024-64716043 Msa0744060:CDS 25.0%
! GTGTAATCAAGATAAATGAT+GGG + chr5_1:64716025-64716044 Msa0744060:CDS 25.0%
!! AAGATAAATGATGGGAAAAT+TGG + chr5_1:64716033-64716052 Msa0744060:CDS 25.0%
!! AGATAAATGATGGGAAAATT+GGG + chr5_1:64716034-64716053 Msa0744060:CDS 25.0%
!!! TAGTTCGGTTTTTAAAACAT+TGG - chr5_1:64716288-64716307 None:intergenic 25.0%
! AAATAACCGACCTATAATAA+AGG + chr5_1:64716381-64716400 Msa0744060:intron 25.0%
!! TGTTTTCAAAACTGAATGAA+TGG - chr5_1:64716432-64716451 None:intergenic 25.0%
!!! TTCATTCAGTTTTGAAAACA+CGG + chr5_1:64716432-64716451 Msa0744060:intron 25.0%
!! AAACACGGATTTTATCATTT+TGG + chr5_1:64716447-64716466 Msa0744060:intron 25.0%
!! AACACGGATTTTATCATTTT+GGG + chr5_1:64716448-64716467 Msa0744060:intron 25.0%
! ACATTAATACTACCAATTCA+TGG + chr5_1:64716501-64716520 Msa0744060:intron 25.0%
! CATTAATACTACCAATTCAT+GGG + chr5_1:64716502-64716521 Msa0744060:intron 25.0%
! ATTAATACTACCAATTCATG+GGG + chr5_1:64716503-64716522 Msa0744060:intron 25.0%
! GAAGTTATAACTTATCTATG+TGG + chr5_1:64716662-64716681 Msa0744060:intron 25.0%
!!! GAGATATTTGTTTTATCTCA+CGG + chr5_1:64716793-64716812 Msa0744060:intron 25.0%
!!! AGATATTTGTTTTATCTCAC+GGG + chr5_1:64716794-64716813 Msa0744060:intron 25.0%
! TCGGTTAATCATAGTTTAAA+TGG - chr5_1:64716944-64716963 None:intergenic 25.0%
! GAGAACATTCTCTAAATAAA+TGG - chr5_1:64717016-64717035 None:intergenic 25.0%
! GGAAAAACAGTATTATCTTA+TGG + chr5_1:64717142-64717161 Msa0744060:intron 25.0%
!!! GCTCTAGAGAAAATTAATAA+TGG - chr5_1:64717172-64717191 None:intergenic 25.0%
! CTCCTTAATCATTAATATCT+AGG + chr5_1:64717202-64717221 Msa0744060:intron 25.0%
! ATTGGAAAAACAAATGAACA+TGG - chr5_1:64717264-64717283 None:intergenic 25.0%
!! ATCAGAACAACTTTATTTCT+TGG - chr5_1:64717439-64717458 None:intergenic 25.0%
! ACTTCATATTCTCTTCAATT+TGG - chr5_1:64717666-64717685 None:intergenic 25.0%
!! GATTTTTCTTGCACTAAATT+AGG - chr5_1:64717699-64717718 None:intergenic 25.0%
!! TCTGAAATTTCAACTTGATT+TGG + chr5_1:64717944-64717963 Msa0744060:intron 25.0%
! CTGAAATTTCAACTTGATTT+GGG + chr5_1:64717945-64717964 Msa0744060:intron 25.0%
! TGCTTGTAAGTTATTAACAA+AGG + chr5_1:64718105-64718124 Msa0744060:intron 25.0%
! GCTTGTAAGTTATTAACAAA+GGG + chr5_1:64718106-64718125 Msa0744060:intron 25.0%
!!! TCAGCTAATATTTTGAGAAA+TGG + chr5_1:64718152-64718171 Msa0744060:intron 25.0%
!! GTTATTTGAACAACCATTTT+TGG - chr5_1:64718346-64718365 None:intergenic 25.0%
! CAACGTGTAAAAAATATTAG+AGG - chr5_1:64718372-64718391 None:intergenic 25.0%
!!! CTCTAATATTTTTTACACGT+TGG + chr5_1:64718370-64718389 Msa0744060:intron 25.0%
! ACAAACTCTAACAATATTTC+TGG + chr5_1:64718788-64718807 Msa0744060:intron 25.0%
!! GTTCTAATAATGGTAATGTT+AGG - chr5_1:64718940-64718959 None:intergenic 25.0%
! GAATAGAACATGATAAAAAC+TGG - chr5_1:64718984-64719003 None:intergenic 25.0%
!!! GATCCAGAAATTTTAATAAG+TGG + chr5_1:64719080-64719099 Msa0744060:intron 25.0%
!!! TCCAGAAATTTTAATAAGTG+GGG + chr5_1:64719082-64719101 Msa0744060:intron 25.0%
!!! TTACCATTTTAACTTTGATG+CGG + chr5_1:64719956-64719975 Msa0744060:intron 25.0%
! CCCAGTTAAAAATCTTATAA+AGG - chr5_1:64720025-64720044 None:intergenic 25.0%
! AGAATAGGGAAAAAAAGAAA+TGG + chr5_1:64720125-64720144 Msa0744060:intron 25.0%
!!! TAATACATTCTTTGGGATTA+TGG + chr5_1:64720479-64720498 Msa0744060:intron 25.0%
! AATCATATTCTCAATCTAGA+TGG + chr5_1:64720563-64720582 Msa0744060:CDS 25.0%
! CTCTAGTATTGTAAAGTAAT+AGG - chr5_1:64720839-64720858 None:intergenic 25.0%
! TCATAGTAAACAAACTAGAT+AGG + chr5_1:64721232-64721251 Msa0744060:CDS 25.0%
!! ATACTAATCTGAAATCCATT+TGG + chr5_1:64721303-64721322 Msa0744060:three_prime_UTR 25.0%
! ATACAATACATCAAACATGA+TGG - chr5_1:64721342-64721361 None:intergenic 25.0%
! TGATGTAAACAATTGATGTA+AGG + chr5_1:64721622-64721641 Msa0744060:three_prime_UTR 25.0%
! GAAGCTGTAAATTCTAATAA+TGG - chr5_1:64721708-64721727 None:intergenic 25.0%
TTCAAATTTAGCTACCCAAT+TGG + chr5_1:64715573-64715592 Msa0744060:intron 30.0%
CATATTACAATGCAACCAAT+TGG - chr5_1:64715591-64715610 None:intergenic 30.0%
CAATTGGTTGCATTGTAATA+TGG + chr5_1:64715589-64715608 Msa0744060:intron 30.0%
!! ATAAGTTTTGTGAGACTGTT+TGG + chr5_1:64715674-64715693 Msa0744060:intron 30.0%
!! TAAGTTTTGTGAGACTGTTT+GGG + chr5_1:64715675-64715694 Msa0744060:intron 30.0%
ATAAGTTGTTTATCCAAACG+GGG + chr5_1:64715774-64715793 Msa0744060:intron 30.0%
TTAGGAACATTTGGAAGTTT+CGG + chr5_1:64715887-64715906 Msa0744060:intron 30.0%
AAAGCTACAATACTCCAAAT+GGG - chr5_1:64715995-64716014 None:intergenic 30.0%
CCAAACTTGGATTAACTTAA+TGG - chr5_1:64716242-64716261 None:intergenic 30.0%
CCATTAAGTTAATCCAAGTT+TGG + chr5_1:64716239-64716258 Msa0744060:intron 30.0%
!!! TTATAGGTCGGTTATTTTTG+CGG - chr5_1:64716378-64716397 None:intergenic 30.0%
! ACACGGATTTTATCATTTTG+GGG + chr5_1:64716449-64716468 Msa0744060:intron 30.0%
ATTAAATTTGATGCTTGGCA+CGG + chr5_1:64716564-64716583 Msa0744060:intron 30.0%
ATCTATGTGGTGAGTTTATT+AGG + chr5_1:64716675-64716694 Msa0744060:intron 30.0%
! GGAGATATGCTTATAGTTTT+TGG - chr5_1:64716725-64716744 None:intergenic 30.0%
CAGATCAAGTGTATAAACTA+GGG - chr5_1:64716746-64716765 None:intergenic 30.0%
ACAGATCAAGTGTATAAACT+AGG - chr5_1:64716747-64716766 None:intergenic 30.0%
AGTTTATACACTTGATCTGT+AGG + chr5_1:64716747-64716766 Msa0744060:intron 30.0%
! TTATGGCTGACTATACATTT+TGG + chr5_1:64716870-64716889 Msa0744060:intron 30.0%
GGAAAATAGTCAACTTTCTA+GGG - chr5_1:64716923-64716942 None:intergenic 30.0%
TGGAAAATAGTCAACTTTCT+AGG - chr5_1:64716924-64716943 None:intergenic 30.0%
CTATTTAACAGTTTAGCACT+CGG - chr5_1:64716963-64716982 None:intergenic 30.0%
ATAATGTTATGGGGGAAATT+GGG + chr5_1:64717113-64717132 Msa0744060:intron 30.0%
!!! AATTTTCTCTAGAGCTTGAT+AGG + chr5_1:64717177-64717196 Msa0744060:intron 30.0%
GAAGTTAAATGAGCTAAAAC+AGG - chr5_1:64717326-64717345 None:intergenic 30.0%
! GTTCTGATCATCTTAATTTG+TGG + chr5_1:64717451-64717470 Msa0744060:intron 30.0%
!! CATCTTAATTTGTGGATTCT+AGG + chr5_1:64717459-64717478 Msa0744060:intron 30.0%
TTTGCAGATCACTATATCAA+AGG + chr5_1:64717979-64717998 Msa0744060:intron 30.0%
TTGCAGATCACTATATCAAA+GGG + chr5_1:64717980-64717999 Msa0744060:intron 30.0%
TTACAAGCAATAACAAATCC+AGG - chr5_1:64718094-64718113 None:intergenic 30.0%
ATACAAAGAAATGTAGGTAG+TGG - chr5_1:64718298-64718317 None:intergenic 30.0%
!!! TATTTTTTACACGTTGGACT+TGG + chr5_1:64718376-64718395 Msa0744060:intron 30.0%
!!! ATTTTTTACACGTTGGACTT+GGG + chr5_1:64718377-64718396 Msa0744060:intron 30.0%
TTGCATTGAATGTATATGCA+CGG - chr5_1:64718404-64718423 None:intergenic 30.0%
CTATCAGATACATTTGGAAA+TGG - chr5_1:64718612-64718631 None:intergenic 30.0%
ACGGAAAAAGAAAAGATAAC+CGG + chr5_1:64718710-64718729 Msa0744060:intron 30.0%
! AATAATGGTAATGTTAGGAG+CGG - chr5_1:64718935-64718954 None:intergenic 30.0%
! GCAAGCAAAAGTTCTAATAA+TGG - chr5_1:64718950-64718969 None:intergenic 30.0%
TCTGCAATAACAGATACAAA+TGG + chr5_1:64719036-64719055 Msa0744060:intron 30.0%
ACCCCACTTATTAAAATTTC+TGG - chr5_1:64719086-64719105 None:intergenic 30.0%
!!! TTTTGTTTTATTTCAGCCCA+CGG + chr5_1:64719283-64719302 Msa0744060:intron 30.0%
AAAAGAAATAACAAACCCGT+GGG - chr5_1:64719302-64719321 None:intergenic 30.0%
! AACCTGTCAGTTTATCTTTT+AGG + chr5_1:64719382-64719401 Msa0744060:intron 30.0%
AACCTAAAAGATAAACTGAC+AGG - chr5_1:64719387-64719406 None:intergenic 30.0%
AAAATACAATACACATGTGG+AGG + chr5_1:64719721-64719740 Msa0744060:intron 30.0%
!! GATTTTAAGTCATCTTCATC+AGG - chr5_1:64719791-64719810 None:intergenic 30.0%
AGCTAACTTAAAATCAGTTG+CGG + chr5_1:64719829-64719848 Msa0744060:intron 30.0%
TTATCTAGCTACTATTCTCA+TGG - chr5_1:64719860-64719879 None:intergenic 30.0%
AGAATAGTAGCTAGATAATC+AGG + chr5_1:64719862-64719881 Msa0744060:intron 30.0%
AACATATTCATGACTACACA+GGG - chr5_1:64719929-64719948 None:intergenic 30.0%
!! ATTTTATCCCTTTGTTTCAG+AGG + chr5_1:64720514-64720533 Msa0744060:intron 30.0%
!! TTTTATCCCTTTGTTTCAGA+GGG + chr5_1:64720515-64720534 Msa0744060:intron 30.0%
ATTGGAAAGCAAAAAGTAAG+AGG - chr5_1:64720656-64720675 None:intergenic 30.0%
! TTACAATACTAGAGAGCATA+TGG + chr5_1:64720845-64720864 Msa0744060:intron 30.0%
CTGAACATAAAGATGATCAA+TGG - chr5_1:64721106-64721125 None:intergenic 30.0%
CATTGATCATCTTTATGTTC+AGG + chr5_1:64721104-64721123 Msa0744060:CDS 30.0%
! TAATCTGAAATCCATTTGGT+GGG + chr5_1:64721307-64721326 Msa0744060:three_prime_UTR 30.0%
ACATCAAACATGATGGTTTA+TGG - chr5_1:64721335-64721354 None:intergenic 30.0%
TGTATAGTGTGTATTATGGT+AGG + chr5_1:64721363-64721382 Msa0744060:three_prime_UTR 30.0%
GTATAGTGTGTATTATGGTA+GGG + chr5_1:64721364-64721383 Msa0744060:three_prime_UTR 30.0%
! CATTTCATTGCTTCATTTTG+TGG + chr5_1:64721425-64721444 Msa0744060:three_prime_UTR 30.0%
TTGTGTGCTAAAATGCATTA+TGG - chr5_1:64721458-64721477 None:intergenic 30.0%
CCATTACAATGCAACCAATT+GGG - chr5_1:64715466-64715485 None:intergenic 35.0%
CCAATTGGTTGCATTGTAAT+GGG + chr5_1:64715464-64715483 Msa0744060:intron 35.0%
! TGCATTGTAATATGGGTTGA+TGG + chr5_1:64715597-64715616 Msa0744060:intron 35.0%
!!! GCTTTTAGTTCGCTTATTTG+AGG + chr5_1:64715639-64715658 Msa0744060:intron 35.0%
TCTCACAAAACTTATGAGAG+TGG - chr5_1:64715669-64715688 None:intergenic 35.0%
AAGCTACAATACTCCAAATG+GGG - chr5_1:64715994-64716013 None:intergenic 35.0%
CAAAGCTACAATACTCCAAA+TGG - chr5_1:64715996-64716015 None:intergenic 35.0%
TTTGGAGAAGTTTCACAATG+CGG - chr5_1:64716072-64716091 None:intergenic 35.0%
GTATGAACTTCATCTGGATT+TGG - chr5_1:64716090-64716109 None:intergenic 35.0%
AACTCAGTATGAACTTCATC+TGG - chr5_1:64716096-64716115 None:intergenic 35.0%
! CTCTTTGATGATAGTGAAGA+AGG + chr5_1:64716117-64716136 Msa0744060:CDS 35.0%
AACCGACCTATAATAAAGGT+CGG + chr5_1:64716385-64716404 Msa0744060:intron 35.0%
AACCGACCTTTATTATAGGT+CGG - chr5_1:64716390-64716409 None:intergenic 35.0%
CTTGAACCGACCTTTATTAT+AGG - chr5_1:64716394-64716413 None:intergenic 35.0%
! CTATAATAAAGGTCGGTTCA+AGG + chr5_1:64716392-64716411 Msa0744060:intron 35.0%
AACTGAATGAATGGATCAAC+CGG - chr5_1:64716423-64716442 None:intergenic 35.0%
TTAAATTTGATGCTTGGCAC+GGG + chr5_1:64716565-64716584 Msa0744060:intron 35.0%
! CATACTGGTACTTTGGTAAT+TGG - chr5_1:64716634-64716653 None:intergenic 35.0%
AGACACACATAGATAACCAT+CGG + chr5_1:64716839-64716858 Msa0744060:intron 35.0%
! AATAGTCAACTTTCTAGGGA+TGG - chr5_1:64716919-64716938 None:intergenic 35.0%
GATAATGTTATGGGGGAAAT+TGG + chr5_1:64717112-64717131 Msa0744060:intron 35.0%
!! GATTCTAGGTTCTGAACAAA+TGG + chr5_1:64717473-64717492 Msa0744060:intron 35.0%
TACCAATGATGCTGAACAAT+CGG + chr5_1:64717545-64717564 Msa0744060:CDS 35.0%
CTGTCAAATTACTTGCATCT+AGG + chr5_1:64717568-64717587 Msa0744060:CDS 35.0%
GCATCACTTGTTCTTAACAT+CGG + chr5_1:64717760-64717779 Msa0744060:intron 35.0%
! GTCACATTTCTGAAGAAAAC+TGG + chr5_1:64717824-64717843 Msa0744060:intron 35.0%
TATCAAAGGGTGAGATAATG+TGG + chr5_1:64717993-64718012 Msa0744060:intron 35.0%
TCCATAAGTTGTCCCAAAAA+TGG + chr5_1:64718330-64718349 Msa0744060:intron 35.0%
!!! ACCATTTTTGGGACAACTTA+TGG - chr5_1:64718334-64718353 None:intergenic 35.0%
TGGGTTCTATCAGATACATT+TGG - chr5_1:64718618-64718637 None:intergenic 35.0%
TTCAACATGATTATAAGGGG+TGG - chr5_1:64718836-64718855 None:intergenic 35.0%
TCCTATTCAGCCCATTTATT+AGG + chr5_1:64718897-64718916 Msa0744060:intron 35.0%
TGGACCTATGCCTAATAAAT+GGG - chr5_1:64718910-64718929 None:intergenic 35.0%
TTGGACCTATGCCTAATAAA+TGG - chr5_1:64718911-64718930 None:intergenic 35.0%
! ATAATGGTAATGTTAGGAGC+GGG - chr5_1:64718934-64718953 None:intergenic 35.0%
!!! TTTGTTTTATTTCAGCCCAC+GGG + chr5_1:64719284-64719303 Msa0744060:intron 35.0%
CAAAAGAAATAACAAACCCG+TGG - chr5_1:64719303-64719322 None:intergenic 35.0%
GCTAACTTAAAATCAGTTGC+GGG + chr5_1:64719830-64719849 Msa0744060:intron 35.0%
CTAACTTAAAATCAGTTGCG+GGG + chr5_1:64719831-64719850 Msa0744060:intron 35.0%
GAACATATTCATGACTACAC+AGG - chr5_1:64719930-64719949 None:intergenic 35.0%
CAACCGCATCAAAGTTAAAA+TGG - chr5_1:64719962-64719981 None:intergenic 35.0%
TCCTCTCTTTCACACAAAAA+CGG - chr5_1:64720080-64720099 None:intergenic 35.0%
! TTTTTGTGTGAAAGAGAGGA+TGG + chr5_1:64720080-64720099 Msa0744060:intron 35.0%
GATGTAACATGTTTAGACAG+TGG + chr5_1:64720102-64720121 Msa0744060:intron 35.0%
ATGTTTAGACAGTGGAGAAT+AGG + chr5_1:64720110-64720129 Msa0744060:intron 35.0%
TGTTTAGACAGTGGAGAATA+GGG + chr5_1:64720111-64720130 Msa0744060:intron 35.0%
! TTCTTTTCAAACTGCAGAGA+AGG - chr5_1:64720378-64720397 None:intergenic 35.0%
AAGTAAGAGGATGAACAGAA+GGG - chr5_1:64720643-64720662 None:intergenic 35.0%
AAAGTAAGAGGATGAACAGA+AGG - chr5_1:64720644-64720663 None:intergenic 35.0%
AACTAAAGACAGCAAAGTGT+TGG - chr5_1:64720685-64720704 None:intergenic 35.0%
! TACTAGAGAGCATATGGATA+AGG + chr5_1:64720851-64720870 Msa0744060:intron 35.0%
!! GTGATGGACTTTAATTCTTG+TGG + chr5_1:64720959-64720978 Msa0744060:intron 35.0%
! AGCAGTTGAAGTGGTTTTTA+AGG + chr5_1:64721026-64721045 Msa0744060:CDS 35.0%
AAGGACAACAATGATTGTTC+TGG + chr5_1:64721045-64721064 Msa0744060:CDS 35.0%
GGAGAAGAGAAGTCAATTAT+TGG + chr5_1:64721066-64721085 Msa0744060:CDS 35.0%
GGAAATCAAGGATTATTCGA+TGG + chr5_1:64721172-64721191 Msa0744060:CDS 35.0%
!!! TTCAATATCGTGGTTTTGAC+TGG + chr5_1:64721196-64721215 Msa0744060:CDS 35.0%
! CTAATCTGAAATCCATTTGG+TGG + chr5_1:64721306-64721325 Msa0744060:three_prime_UTR 35.0%
! AATCTGAAATCCATTTGGTG+GGG + chr5_1:64721308-64721327 Msa0744060:three_prime_UTR 35.0%
TCCATTGTCTCATAATGCTA+TGG + chr5_1:64721390-64721409 Msa0744060:three_prime_UTR 35.0%
!! CTGCTTTCTTTTTCACATTG+AGG + chr5_1:64721509-64721528 Msa0744060:three_prime_UTR 35.0%
AAATAGTAGCATCTCCTAAG+TGG - chr5_1:64721559-64721578 None:intergenic 35.0%
!!! ATTGTGTGCCCATTTTTTGA+TGG + chr5_1:64721587-64721606 Msa0744060:three_prime_UTR 35.0%
AGACAGCACCATCAAAAAAT+GGG - chr5_1:64721598-64721617 None:intergenic 35.0%
CAAAATTTGTGCCGTAGGAA+GGG - chr5_1:64715219-64715238 None:intergenic 40.0%
GTAACCAAAATTTGTGCCGT+AGG - chr5_1:64715224-64715243 None:intergenic 40.0%
GAACATGGCAAGAAGTTTAG+CGG + chr5_1:64715246-64715265 Msa0744060:CDS 40.0%
AACATGGCAAGAAGTTTAGC+GGG + chr5_1:64715247-64715266 Msa0744060:CDS 40.0%
AGAAGTTTAGCGGGAAACAT+TGG + chr5_1:64715256-64715275 Msa0744060:CDS 40.0%
CCCAATTGGTTGCATTGTAA+TGG + chr5_1:64715463-64715482 Msa0744060:intron 40.0%
CCCATTACAATGCAACCAAT+TGG - chr5_1:64715467-64715486 None:intergenic 40.0%
AGACTGTTTGGGAGAACTTA+TGG + chr5_1:64715686-64715705 Msa0744060:intron 40.0%
TTACAAAATATGGCCCCGTT+TGG - chr5_1:64715790-64715809 None:intergenic 40.0%
TTCGGATTGAATGCTTCAAG+AGG + chr5_1:64715905-64715924 Msa0744060:CDS 40.0%
! AGAGACTTTAGTTCGTGTGT+TGG + chr5_1:64715928-64715947 Msa0744060:CDS 40.0%
! TTAGTTCGTGTGTTGGTGTT+AGG + chr5_1:64715935-64715954 Msa0744060:CDS 40.0%
ACATTCCTAACACATCATGC+AGG + chr5_1:64715959-64715978 Msa0744060:CDS 40.0%
CATTCCTAACACATCATGCA+GGG + chr5_1:64715960-64715979 Msa0744060:CDS 40.0%
! GAGTATTGTAGCTTTGCTGA+TGG + chr5_1:64716000-64716019 Msa0744060:CDS 40.0%
ATGATGTCATAGGCCAAACT+TGG - chr5_1:64716255-64716274 None:intergenic 40.0%
ACTTATGCTTCACTTCACAG+AGG + chr5_1:64716474-64716493 Msa0744060:intron 40.0%
AGTCTAGATACCCCATGAAT+TGG - chr5_1:64716516-64716535 None:intergenic 40.0%
GGGATCGGTTACTTAAAGTA+CGG + chr5_1:64716585-64716604 Msa0744060:intron 40.0%
TAACTTCACCTACAGCATAC+TGG - chr5_1:64716649-64716668 None:intergenic 40.0%
GTTTATTAGGATACACCTGC+AGG + chr5_1:64716688-64716707 Msa0744060:intron 40.0%
TTGGTTACATTCAATCCTGC+AGG - chr5_1:64716706-64716725 None:intergenic 40.0%
!!! TTTGTTTTATCTCACGGGTC+AGG + chr5_1:64716799-64716818 Msa0744060:intron 40.0%
!! TTGTTTTATCTCACGGGTCA+GGG + chr5_1:64716800-64716819 Msa0744060:intron 40.0%
AACCATCGGAGCTTACTTTA+TGG + chr5_1:64716853-64716872 Msa0744060:intron 40.0%
CAGAGGCTTCATTATAGTTG+AGG + chr5_1:64717040-64717059 Msa0744060:intron 40.0%
CTAGGATGGATGATCATGAT+AGG + chr5_1:64717220-64717239 Msa0744060:intron 40.0%
!! AGGTTCTGAACAAATGGAAG+AGG + chr5_1:64717479-64717498 Msa0744060:intron 40.0%
TCTGAACAAATGGAAGAGGT+TGG + chr5_1:64717483-64717502 Msa0744060:CDS 40.0%
ATGTTACAAGTTCGAGACGA+GGG - chr5_1:64717600-64717619 None:intergenic 40.0%
TATGTTACAAGTTCGAGACG+AGG - chr5_1:64717601-64717620 None:intergenic 40.0%
!! GAAATGATCGTTTAGCTCTG+TGG - chr5_1:64717860-64717879 None:intergenic 40.0%
ACTTTCTCTCTCTATTGCTC+TGG + chr5_1:64718264-64718283 Msa0744060:intron 40.0%
AGTTAGCTACATACTGTCTC+TGG - chr5_1:64718556-64718575 None:intergenic 40.0%
TGAACTCAAGAGCTCTACAA+TGG + chr5_1:64718682-64718701 Msa0744060:intron 40.0%
TTGTTAGGAGAGTTTCTCTC+TGG - chr5_1:64718772-64718791 None:intergenic 40.0%
TGGCTGATATAGCAATCAGT+TGG - chr5_1:64718863-64718882 None:intergenic 40.0%
!! GCCTAATAAATGGGCTGAAT+AGG - chr5_1:64718901-64718920 None:intergenic 40.0%
TCAGCCCATTTATTAGGCAT+AGG + chr5_1:64718903-64718922 Msa0744060:intron 40.0%
AGAACATTATGCAGCCTAAG+AGG + chr5_1:64719333-64719352 Msa0744060:intron 40.0%
!! CCTATCAAAAAGTGCCTCTT+AGG - chr5_1:64719350-64719369 None:intergenic 40.0%
!!! CCTAAGAGGCACTTTTTGAT+AGG + chr5_1:64719347-64719366 Msa0744060:intron 40.0%
GTGCTCTTAGAACACTCATT+AGG + chr5_1:64719594-64719613 Msa0744060:intron 40.0%
TAAGTCATCTTCATCAGGCA+CGG - chr5_1:64719786-64719805 None:intergenic 40.0%
ATATTCATGACTACACAGGG+TGG - chr5_1:64719926-64719945 None:intergenic 40.0%
TCTCTTTCACACAAAAACGG+AGG - chr5_1:64720077-64720096 None:intergenic 40.0%
!! TCCGTTTTTGTGTGAAAGAG+AGG + chr5_1:64720076-64720095 Msa0744060:intron 40.0%
! TCTGTGTGAAACAGAGTGTT+TGG + chr5_1:64720320-64720339 Msa0744060:intron 40.0%
!! GATGAACCCTCTGAAACAAA+GGG - chr5_1:64720524-64720543 None:intergenic 40.0%
!! TGATGAACCCTCTGAAACAA+AGG - chr5_1:64720525-64720544 None:intergenic 40.0%
TCAGAGGGTTCATCAATGAT+AGG + chr5_1:64720530-64720549 Msa0744060:intron 40.0%
TAGATGGTCTTCGTCTACTT+GGG + chr5_1:64720579-64720598 Msa0744060:CDS 40.0%
AAAAGTAGATGCACACTGCT+AGG - chr5_1:64720794-64720813 None:intergenic 40.0%
CAACGAAAATATGCGTGTGA+TGG + chr5_1:64720943-64720962 Msa0744060:intron 40.0%
TGGACTTTAATTCTTGTGGC+AGG + chr5_1:64720963-64720982 Msa0744060:intron 40.0%
TGCTGAAAAAGCAGTTGAAG+TGG + chr5_1:64721017-64721036 Msa0744060:CDS 40.0%
CTTGATTTCCTTGTCTCCTT+CGG - chr5_1:64721162-64721181 None:intergenic 40.0%
ATTCGATGGCTTCAATATCG+TGG + chr5_1:64721186-64721205 Msa0744060:CDS 40.0%
GCCATAGCATTATGAGACAA+TGG - chr5_1:64721394-64721413 None:intergenic 40.0%
! TTGCTTCATTTTGTGGCTCA+AGG + chr5_1:64721432-64721451 Msa0744060:three_prime_UTR 40.0%
CAGACAGCACCATCAAAAAA+TGG - chr5_1:64721599-64721618 None:intergenic 40.0%
!! AGCTTCTAGAACTGTATGAG+TGG + chr5_1:64721722-64721741 Msa0744060:three_prime_UTR 40.0%
AGAGTAAGAGACCCTTCCTA+CGG + chr5_1:64715205-64715224 Msa0744060:five_prime_UTR 45.0%
CCAAAATTTGTGCCGTAGGA+AGG - chr5_1:64715220-64715239 None:intergenic 45.0%
! CCTTCCTACGGCACAAATTT+TGG + chr5_1:64715217-64715236 Msa0744060:five_prime_UTR 45.0%
CTGGGGATTGAAAAAATGCG+AGG - chr5_1:64715307-64715326 None:intergenic 45.0%
!!! CTCGCATTTTTTCAATCCCC+AGG + chr5_1:64715305-64715324 Msa0744060:CDS 45.0%
TTCACCCTGCATGATGTGTT+AGG - chr5_1:64715967-64715986 None:intergenic 45.0%
CAGGGTGAAAATTCCCCATT+TGG + chr5_1:64715978-64715997 Msa0744060:CDS 45.0%
GGTTTAAGCCAGTTGAACCA+TGG - chr5_1:64716337-64716356 None:intergenic 45.0%
CCTACAGCATACTGGTACTT+TGG - chr5_1:64716641-64716660 None:intergenic 45.0%
! CCAAAGTACCAGTATGCTGT+AGG + chr5_1:64716638-64716657 Msa0744060:intron 45.0%
! TGTTTTATCTCACGGGTCAG+GGG + chr5_1:64716801-64716820 Msa0744060:intron 45.0%
AGCCATAAAGTAAGCTCCGA+TGG - chr5_1:64716858-64716877 None:intergenic 45.0%
AGAGAATGTTCTCGCTTCAG+AGG + chr5_1:64717023-64717042 Msa0744060:intron 45.0%
ATGGGGGAAATTGGGAAGAA+AGG + chr5_1:64717121-64717140 Msa0744060:intron 45.0%
GGTTGGAGATTCTTGTGAAC+AGG + chr5_1:64717500-64717519 Msa0744060:CDS 45.0%
AGCCGATTGTTCAGCATCAT+TGG - chr5_1:64717550-64717569 None:intergenic 45.0%
GACAATTGCATTGCCTCAGT+AGG - chr5_1:64717807-64717826 None:intergenic 45.0%
GAAATTCTCCCCTAATGCAG+TGG + chr5_1:64718511-64718530 Msa0744060:intron 45.0%
ACTCAAGAGCTCTACAATGG+TGG + chr5_1:64718685-64718704 Msa0744060:intron 45.0%
! GAGCTCTACAATGGTGGAAA+CGG + chr5_1:64718691-64718710 Msa0744060:intron 45.0%
GGTTAGGAGTTCTTGAACTC+CGG - chr5_1:64718732-64718751 None:intergenic 45.0%
! AGGAGCATATTGCTCTGGTT+AGG - chr5_1:64718748-64718767 None:intergenic 45.0%
TAGGAGAGTTTCTCTCTGGT+AGG - chr5_1:64718768-64718787 None:intergenic 45.0%
TAAGGGGTGGAAGTAAGAGA+GGG - chr5_1:64718823-64718842 None:intergenic 45.0%
ATAAGGGGTGGAAGTAAGAG+AGG - chr5_1:64718824-64718843 None:intergenic 45.0%
TGTGACTGACTGACGCAATA+CGG - chr5_1:64719433-64719452 None:intergenic 45.0%
AATACACATGTGGAGGCAAG+TGG + chr5_1:64719728-64719747 Msa0744060:intron 45.0%
ATACACATGTGGAGGCAAGT+GGG + chr5_1:64719729-64719748 Msa0744060:intron 45.0%
CTAGATGGTCTTCGTCTACT+TGG + chr5_1:64720578-64720597 Msa0744060:CDS 45.0%
AGATGGTCTTCGTCTACTTG+GGG + chr5_1:64720580-64720599 Msa0744060:CDS 45.0%
CTTACCTGTTTGATCCGTCT+TGG - chr5_1:64720607-64720626 None:intergenic 45.0%
TAAGAGGATGAACAGAAGGG+CGG - chr5_1:64720640-64720659 None:intergenic 45.0%
!! GCAAAGTGTTGGCAGTGTAT+TGG - chr5_1:64720674-64720693 None:intergenic 45.0%
! GAGAGCATATGGATAAGGCA+TGG + chr5_1:64720856-64720875 Msa0744060:intron 45.0%
! GGTCAGCGACATTGTTTTCA+TGG + chr5_1:64720877-64720896 Msa0744060:intron 45.0%
ACCTTTGAACCACTGCTTTG+AGG - chr5_1:64721130-64721149 None:intergenic 45.0%
CAAAGGTCAGAATGTTCCGA+AGG + chr5_1:64721143-64721162 Msa0744060:CDS 45.0%
AGAATGTTCCGAAGGAGACA+AGG + chr5_1:64721151-64721170 Msa0744060:CDS 45.0%
CGAAGGAGACAAGGAAATCA+AGG + chr5_1:64721160-64721179 Msa0744060:CDS 45.0%
AATCCTCCATAGTGCACAAC+TGG + chr5_1:64721264-64721283 Msa0744060:exon 45.0%
ATCCTCCATAGTGCACAACT+GGG + chr5_1:64721265-64721284 Msa0744060:exon 45.0%
!! TAAAGCAGAAAGCGCCACTT+AGG + chr5_1:64721542-64721561 Msa0744060:three_prime_UTR 45.0%
!! TAAAAATTATAAAACAAAAA+AGG - chr5_1:64719622-64719641 None:intergenic 5.0%
CGCGAGTTCAACGTCTAGTT+CGG - chr5_1:64716303-64716322 None:intergenic 50.0%
GTTGAACTCGCGAGACTTCT+GGG + chr5_1:64716311-64716330 Msa0744060:intron 50.0%
! AGGTCGGTTCAAGGTTCAAC+CGG + chr5_1:64716401-64716420 Msa0744060:intron 50.0%
TTTGATGCTTGGCACGGGAT+CGG + chr5_1:64716570-64716589 Msa0744060:intron 50.0%
TATCACCGTGCTTCCTACTG+AGG + chr5_1:64717791-64717810 Msa0744060:intron 50.0%
CATTGCCTCAGTAGGAAGCA+CGG - chr5_1:64717799-64717818 None:intergenic 50.0%
TGCCTATCTTCTTACTCCGC+AGG + chr5_1:64718447-64718466 Msa0744060:intron 50.0%
GCCTATCTTCTTACTCCGCA+GGG + chr5_1:64718448-64718467 Msa0744060:intron 50.0%
ATTCTCCCCTAATGCAGTGG+AGG + chr5_1:64718514-64718533 Msa0744060:intron 50.0%
TCACTGCCTCCACTGCATTA+GGG - chr5_1:64718523-64718542 None:intergenic 50.0%
ATCACTGCCTCCACTGCATT+AGG - chr5_1:64718524-64718543 None:intergenic 50.0%
! CTGGTAGGAGCATATTGCTC+TGG - chr5_1:64718753-64718772 None:intergenic 50.0%
CTATATCAGCCATCGCTCCA+CGG + chr5_1:64718871-64718890 Msa0744060:intron 50.0%
TATATCAGCCATCGCTCCAC+GGG + chr5_1:64718872-64718891 Msa0744060:intron 50.0%
! TGGTAATGTTAGGAGCGGGT+TGG - chr5_1:64718930-64718949 None:intergenic 50.0%
ACACATAGCGTCAGTGATGC+AGG + chr5_1:64719179-64719198 Msa0744060:intron 50.0%
ATAGCGTCAGTGATGCAGGA+GGG + chr5_1:64719183-64719202 Msa0744060:intron 50.0%
TACACATGTGGAGGCAAGTG+GGG + chr5_1:64719730-64719749 Msa0744060:intron 50.0%
ATCAGGCACGGATCTAGTGT+GGG - chr5_1:64719774-64719793 None:intergenic 50.0%
GATGGTCTTCGTCTACTTGG+GGG + chr5_1:64720581-64720600 Msa0744060:CDS 50.0%
! TGGCAGGCACTGTTCAAGAA+AGG + chr5_1:64720979-64720998 Msa0744060:intron 50.0%
ATGTTCAGGCCTCAAAGCAG+TGG + chr5_1:64721118-64721137 Msa0744060:CDS 50.0%
GCCTCAAAGCAGTGGTTCAA+AGG + chr5_1:64721126-64721145 Msa0744060:CDS 50.0%
GATGTCCCAGTTGTGCACTA+TGG - chr5_1:64721273-64721292 None:intergenic 50.0%
GGTTTATGGACCCCACCAAA+TGG - chr5_1:64721321-64721340 None:intergenic 50.0%
CGTTGAACTCGCGAGACTTC+TGG + chr5_1:64716310-64716329 Msa0744060:intron 55.0%
CTTCTGGGCCATGGTTCAAC+TGG + chr5_1:64716326-64716345 Msa0744060:intron 55.0%
! ACTGGCTTAAACCGCTCGAG+CGG + chr5_1:64716344-64716363 Msa0744060:intron 55.0%
!! CGGTTTTATCTCCGCTCGAG+CGG - chr5_1:64716358-64716377 None:intergenic 55.0%
GCCCTGCGGAGTAAGAAGAT+AGG - chr5_1:64718452-64718471 None:intergenic 55.0%
CACTGCCTCCACTGCATTAG+GGG - chr5_1:64718522-64718541 None:intergenic 55.0%
ATAGGAAACCCGTGGAGCGA+TGG - chr5_1:64718883-64718902 None:intergenic 55.0%
TGGGCTGAATAGGAAACCCG+TGG - chr5_1:64718891-64718910 None:intergenic 55.0%
CATAGCGTCAGTGATGCAGG+AGG + chr5_1:64719182-64719201 Msa0744060:intron 55.0%
! CTGACGCAATACGGAAGCGT+AGG - chr5_1:64719424-64719443 None:intergenic 55.0%
GGATCTAGTGTGGGGGCAAT+GGG - chr5_1:64719765-64719784 None:intergenic 55.0%
TCAGGCACGGATCTAGTGTG+GGG - chr5_1:64719773-64719792 None:intergenic 55.0%
CATCAGGCACGGATCTAGTG+TGG - chr5_1:64719775-64719794 None:intergenic 55.0%
GTCCCAGTTGTGCACTATGG+AGG - chr5_1:64721270-64721289 None:intergenic 55.0%
CTACTGCTGTGAGTGCCCTG+CGG - chr5_1:64718466-64718485 None:intergenic 60.0%
CGGATCTAGTGTGGGGGCAA+TGG - chr5_1:64719766-64719785 None:intergenic 60.0%
CAGGCACGGATCTAGTGTGG+GGG - chr5_1:64719772-64719791 None:intergenic 60.0%
CGTCTACTTGGGGGCCAAGA+CGG + chr5_1:64720590-64720609 Msa0744060:CDS 60.0%
GGGGCCAAGACGGATCAAAC+AGG + chr5_1:64720600-64720619 Msa0744060:CDS 60.0%
CTCGCGAGACTTCTGGGCCA+TGG + chr5_1:64716317-64716336 Msa0744060:intron 65.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 64715169 64721760 64715169 ID=Msa0744060;Name=Msa0744060
chr5_1 mRNA 64715169 64721760 64715169 ID=Msa0744060-mRNA-1;Parent=Msa0744060;Name=Msa0744060-mRNA-1;_AED=0.17;_eAED=0.17;_QI=75|0.75|1|1|1|1|5|485|272
chr5_1 exon 64715169 64715326 64715169 ID=Msa0744060-mRNA-1:exon:19169;Parent=Msa0744060-mRNA-1
chr5_1 exon 64715891 64716138 64715891 ID=Msa0744060-mRNA-1:exon:19170;Parent=Msa0744060-mRNA-1
chr5_1 exon 64717481 64717589 64717481 ID=Msa0744060-mRNA-1:exon:19171;Parent=Msa0744060-mRNA-1
chr5_1 exon 64720534 64720621 64720534 ID=Msa0744060-mRNA-1:exon:19172;Parent=Msa0744060-mRNA-1
chr5_1 exon 64720985 64721760 64720985 ID=Msa0744060-mRNA-1:exon:19173;Parent=Msa0744060-mRNA-1
chr5_1 five_prime_UTR 64715169 64715243 64715169 ID=Msa0744060-mRNA-1:five_prime_utr;Parent=Msa0744060-mRNA-1
chr5_1 CDS 64715244 64715326 64715244 ID=Msa0744060-mRNA-1:cds;Parent=Msa0744060-mRNA-1
chr5_1 CDS 64715891 64716138 64715891 ID=Msa0744060-mRNA-1:cds;Parent=Msa0744060-mRNA-1
chr5_1 CDS 64717481 64717589 64717481 ID=Msa0744060-mRNA-1:cds;Parent=Msa0744060-mRNA-1
chr5_1 CDS 64720534 64720621 64720534 ID=Msa0744060-mRNA-1:cds;Parent=Msa0744060-mRNA-1
chr5_1 CDS 64720985 64721275 64720985 ID=Msa0744060-mRNA-1:cds;Parent=Msa0744060-mRNA-1
chr5_1 three_prime_UTR 64721276 64721760 64721276 ID=Msa0744060-mRNA-1:three_prime_utr;Parent=Msa0744060-mRNA-1
Gene Sequence

>Msa0744060

ATGAACATGGCAAGAAGTTTAGCGGGAAACATTGGCTTCAAAATCTCATCTCATCTTCAACCTCGCATTTTTTCAATCCCCAGGAACATTTGGAAGTTTCGGATTGAATGCTTCAAGAGGAGAGACTTTAGTTCGTGTGTTGGTGTTAGGTACATTCCTAACACATCATGCAGGGTGAAAATTCCCCATTTGGAGTATTGTAGCTTTGCTGATGGCAGTGTAATCAAGATAAATGATGGGAAAATTGGGCATGCAACAATTCCGCATTGTGAAACTTCTCCAAATCCAGATGAAGTTCATACTGAGTTACTCTTTGATGATAGTGAAGAAGGTTCTGAACAAATGGAAGAGGTTGGAGATTCTTGTGAACAGGATTTCATACGTGTTGACAAATTTACCAATGATGCTGAACAATCGGCTGTCAAATTACTTGCATCTAGAGGGTTCATCAATGATAGGTTGTATGCTGAATCATATTCTCAATCTAGATGGTCTTCGTCTACTTGGGGGCCAAGACGGATCAAACAGGCACTGTTCAAGAAAGGAGTTAGTCAAGCTGATGCTGAAAAAGCAGTTGAAGTGGTTTTTAAGGACAACAATGATTGTTCTGGAGAAGAGAAGTCAATTATTGGCTTGTCAAAGCAATCCATTGATCATCTTTATGTTCAGGCCTCAAAGCAGTGGTTCAAAGGTCAGAATGTTCCGAAGGAGACAAGGAAATCAAGGATTATTCGATGGCTTCAATATCGTGGTTTTGACTGGAGTGTCATTAGCATCATAGTAAACAAACTAGATAGGCATGAGCAGAATCCTCCATAG
Protein sequence

>Msa0744060

MNMARSLAGNIGFKISSHLQPRIFSIPRNIWKFRIECFKRRDFSSCVGVRYIPNTSCRVKIPHLEYCSFADGSVIKINDGKIGHATIPHCETSPNPDEVHTELLFDDSEEGSEQMEEVGDSCEQDFIRVDKFTNDAEQSAVKLLASRGFINDRLYAESYSQSRWSSSTWGPRRIKQALFKKGVSQADAEKAVEVVFKDNNDCSGEEKSIIGLSKQSIDHLYVQASKQWFKGQNVPKETRKSRIIRWLQYRGFDWSVISIIVNKLDRHEQNPP*