AlfalfaGEDB | Msa0825310

M. sativa cultivar zhongmu-4 / Msa0825310

KEGG: -
GO: -
PFAM: PF02631.19

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0825310	XP_003617886.2	84.539	304	16	1	1	273	1	304	3.36e-176	498

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0825310	sp\|A2RNY5\|RECX_LACLM	29.121	182	111	5	87	266	43	208	6.64e-11	64.7

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0825310	G7K4S5	84.539	304	16	1	1	273	1	304	1.61e-176	498

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0032840	Msa0825310	-0.811862	5.662069e-51	-8.615850e-47
Msa0094950	Msa0825310	0.806517	7.915187e-50	-8.615850e-47
Msa0095380	Msa0825310	0.802858	4.594454e-49	-8.615850e-47
Msa0173820	Msa0825310	0.800567	1.356857e-48	-8.615850e-47
Msa0186890	Msa0825310	0.809953	1.466726e-50	-8.615850e-47
Msa0194540	Msa0825310	0.800493	1.404467e-48	-8.615850e-47
Msa0199690	Msa0825310	0.809425	1.904434e-50	-8.615850e-47
Msa0230550	Msa0825310	-0.809989	1.440524e-50	-8.615850e-47
Msa0241800	Msa0825310	0.801215	1.000191e-48	-8.615850e-47
Msa0260240	Msa0825310	0.807883	4.066089e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0825310	MtrunA17_Chr5g0447021	84.539	304	16	1	1	273	1	304	3.09e-180	498

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0825310	AT3G13226.1	42.915	247	118	6	42	266	132	377	1.78e-60	196

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Find 82 sgRNAs with CRISPR-Local

Find 392 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGCTACAATACTCCAAAT+GGG	0.474481	5_3:+65080146	None:intergenic
AAATAGTAGCATCTCCTAAG+TGG	0.553438	5_3:+65074585	None:intergenic
AACATGGCAAGAAGTTTAGC+GGG	0.560092	5_3:-65080892	Msa0825310:CDS
AACTCAGTATGAACTTCATC+TGG	0.406135	5_3:+65080045	None:intergenic
AAGATAAATGATGGGAAAAT+TGG	0.155313	5_3:-65080105	Msa0825310:CDS
AAGCTACAATACTCCAAATG+GGG	0.674118	5_3:+65080147	None:intergenic
AAGGACAACAATGATTGTTC+TGG	0.357621	5_3:-65075096	Msa0825310:CDS
AATCATATTCTCAATCTAGA+TGG	0.477303	5_3:-65075578	Msa0825310:CDS
AATCCTCCATAGTGCACAAC+TGG	0.386999	5_3:-65074877	Msa0825310:exon
AATCTGAAATCCATTTGGTG+GGG	0.639576	5_3:-65074833	Msa0825310:three_prime_UTR

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTCAAATTTAGCTACCCAAT+TGG	-	chr5_3:65074807-65074826	Msa0825310:three_prime_UTR	30.0%
CATATTACAATGCAACCAAT+TGG	+	chr5_3:65074825-65074844	None:intergenic	30.0%
CAATTGGTTGCATTGTAATA+TGG	-	chr5_3:65074823-65074842	Msa0825310:three_prime_UTR	30.0%
ATAAGTTGTTTATCCAAACG+GGG	-	chr5_3:65075009-65075028	Msa0825310:CDS	30.0%
TTAGGAACATTTGGAAGTTT+CGG	-	chr5_3:65075122-65075141	Msa0825310:CDS	30.0%
AAAGCTACAATACTCCAAAT+GGG	+	chr5_3:65075230-65075249	None:intergenic	30.0%
CCAAACTTGGATTAACTTAA+TGG	+	chr5_3:65075477-65075496	None:intergenic	30.0%
CCATTAAGTTAATCCAAGTT+TGG	-	chr5_3:65075474-65075493	Msa0825310:intron	30.0%
ATTAAATTTGATGCTTGGCA+CGG	-	chr5_3:65075799-65075818	Msa0825310:intron	30.0%
ATCTATGTGGTGAGTTTATT+AGG	-	chr5_3:65075910-65075929	Msa0825310:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_3	gene	65074403	65080992	65074403	ID=Msa0825310;Name=Msa0825310
chr5_3	mRNA	65074403	65080992	65074403	ID=Msa0825310-mRNA-1;Parent=Msa0825310;Name=Msa0825310-mRNA-1;_AED=0.17;_eAED=0.17;_QI=75\|0.8\|0.83\|1\|1\|1\|6\|485\|273
chr5_3	exon	65074403	65075178	65074403	ID=Msa0825310-mRNA-1:exon:20366;Parent=Msa0825310-mRNA-1
chr5_3	exon	65075542	65075629	65075542	ID=Msa0825310-mRNA-1:exon:20365;Parent=Msa0825310-mRNA-1
chr5_3	exon	65077603	65077695	65077603	ID=Msa0825310-mRNA-1:exon:20364;Parent=Msa0825310-mRNA-1
chr5_3	exon	65078571	65078679	65078571	ID=Msa0825310-mRNA-1:exon:20363;Parent=Msa0825310-mRNA-1
chr5_3	exon	65080022	65080179	65080022	ID=Msa0825310-mRNA-1:exon:20362;Parent=Msa0825310-mRNA-1
chr5_3	exon	65080835	65080992	65080835	ID=Msa0825310-mRNA-1:exon:20361;Parent=Msa0825310-mRNA-1
chr5_3	five_prime_UTR	65080918	65080992	65080918	ID=Msa0825310-mRNA-1:five_prime_utr;Parent=Msa0825310-mRNA-1
chr5_3	CDS	65080835	65080917	65080835	ID=Msa0825310-mRNA-1:cds;Parent=Msa0825310-mRNA-1
chr5_3	CDS	65080022	65080179	65080022	ID=Msa0825310-mRNA-1:cds;Parent=Msa0825310-mRNA-1
chr5_3	CDS	65078571	65078679	65078571	ID=Msa0825310-mRNA-1:cds;Parent=Msa0825310-mRNA-1
chr5_3	CDS	65077603	65077695	65077603	ID=Msa0825310-mRNA-1:cds;Parent=Msa0825310-mRNA-1
chr5_3	CDS	65075542	65075629	65075542	ID=Msa0825310-mRNA-1:cds;Parent=Msa0825310-mRNA-1
chr5_3	CDS	65074888	65075178	65074888	ID=Msa0825310-mRNA-1:cds;Parent=Msa0825310-mRNA-1
chr5_3	three_prime_UTR	65074403	65074887	65074403	ID=Msa0825310-mRNA-1:three_prime_utr;Parent=Msa0825310-mRNA-1

Gene Sequence

>Msa0825310

ATGAACATGGCAAGAAGTTTAGCGGGAAACATTGGCTTCAAAATCTCATCTCATCTTCAACCTCGCATTTTTTCAATCCCCAGGGTGAAAATTCCCCATTTGGAGTATTGTAGCTTTGCTGATGGCAGTGTAATCAAGATAAATGATGGGAAAATTGGGCATGCAACAATTCCGCATTGTGAAACTTCTCCAAATCCAGATGAAGTTCATACTGAGTTACTCTTTGATGATAGTGAAGAAGGTTCTGAACAAATGGAAGAGGTTGGAGATTCTTGTGAACAGGATTTCATACGTGTTGACAAATTTACCAATGATGCTGAACAATCGGCTGTCAAATTACTTGCATCTAGGGCACTCACAGCAGTAGAGTTGAGAAAGAAATTGCTTAGCAAGAAATTCTCCCCTAATGCAGTGGAGGCAGTGATAAACAAGCTCCAGAGACAAGGGTTCATCAATGATAGGTTGTATGCTGAATCATATTCTCAATCTAGATGGTCTTCGTCTACTTGGGGGCCAAGACGGATCAAACAGGCACTGTTCAAGAAAGGAGTTAGTCAAGCTGATGCTGAAAAAGCAGTTGAAGTGGTTTTTAAGGACAACAATGATTGTTCTGGAGAAGAGAAGTCAATTATTGGCTTGTCAAAGCAATCCATTGATCATCTTTATGTTCAGGCCTCAAAGCAGTGGTTCAAAGGTCAGAATGTTCCGAAGGAGACAAGGAAATCAAGGATTATTCGATGGCTTCAATATCGTGGTTTTGACTGGAGTGTCATTAGCATCATAGTAAACAAACTAGATAGGCATGAGCAGAATCCTCCATAG

Protein sequence

>Msa0825310

MNMARSLAGNIGFKISSHLQPRIFSIPRVKIPHLEYCSFADGSVIKINDGKIGHATIPHCETSPNPDEVHTELLFDDSEEGSEQMEEVGDSCEQDFIRVDKFTNDAEQSAVKLLASRALTAVELRKKLLSKKFSPNAVEAVINKLQRQGFINDRLYAESYSQSRWSSSTWGPRRIKQALFKKGVSQADAEKAVEVVFKDNNDCSGEEKSIIGLSKQSIDHLYVQASKQWFKGQNVPKETRKSRIIRWLQYRGFDWSVISIIVNKLDRHEQNPP*