AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0745400

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0745400 MtrunA17_Chr5g0448551 95.186 457 18 3 1 455 3 457 0.0 878
Msa0745400 MtrunA17_Chr7g0218811 32.168 429 269 10 1 420 11 426 6.76e-75 241
Msa0745400 MtrunA17_Chr7g0218821 30.137 438 277 8 1 420 1 427 4.12e-72 234
Msa0745400 MtrunA17_Chr7g0218831 30.227 440 281 11 4 432 5 429 4.43e-67 221
Msa0745400 MtrunA17_Chr7g0218841 30.543 442 278 13 4 432 5 430 3.24e-65 216
Msa0745400 MtrunA17_Chr7g0218791 31.350 437 274 12 1 422 1 426 8.78e-64 212
Msa0745400 MtrunA17_Chr3g0092641 31.293 441 267 15 4 415 11 444 1.98e-58 199
Msa0745400 MtrunA17_Chr8g0380531 30.140 428 268 12 6 415 11 425 9.46e-54 186
Msa0745400 MtrunA17_Chr6g0454401 28.090 445 286 13 2 415 7 448 3.73e-53 185
Msa0745400 MtrunA17_Chr3g0112761 31.096 447 265 16 6 428 9 436 1.63e-52 183
Msa0745400 MtrunA17_Chr6g0454191 27.928 444 288 12 2 415 7 448 3.92e-52 182
Msa0745400 MtrunA17_Chr3g0078841 27.660 470 292 13 3 443 8 458 5.36e-52 182
Msa0745400 MtrunA17_Chr8g0359821 28.345 441 287 11 2 415 7 445 2.35e-51 180
Msa0745400 MtrunA17_Chr6g0453951 27.692 455 290 14 2 421 54 504 2.73e-50 179
Msa0745400 MtrunA17_Chr5g0426431 29.157 439 275 16 6 415 13 444 3.18e-50 177
Msa0745400 MtrunA17_Chr6g0454181 27.152 453 292 13 2 423 7 452 3.85e-50 177
Msa0745400 MtrunA17_Chr3g0112771 30.093 432 271 12 6 421 13 429 3.97e-50 177
Msa0745400 MtrunA17_Chr6g0454321 27.938 451 289 12 2 423 7 450 5.22e-50 180
Msa0745400 MtrunA17_Chr6g0454211 27.928 444 287 11 2 415 294 734 1.22e-49 180
Msa0745400 MtrunA17_Chr6g0454211 26.460 291 154 10 115 380 3 258 1.94e-22 100
Msa0745400 MtrunA17_Chr3g0118701 26.577 444 291 11 2 415 12 450 2.01e-49 175
Msa0745400 MtrunA17_Chr3g0118671 27.045 440 284 10 7 415 8 441 2.36e-49 175
Msa0745400 MtrunA17_Chr6g0454261 27.088 443 292 10 2 415 7 447 3.56e-49 174
Msa0745400 MtrunA17_Chr6g0453961 27.928 444 286 12 3 415 17 457 4.92e-49 174
Msa0745400 MtrunA17_Chr6g0454341 26.726 449 297 11 2 423 7 450 7.51e-49 174
Msa0745400 MtrunA17_Chr6g0464921 28.571 441 271 13 4 429 10 421 1.00e-48 173
Msa0745400 MtrunA17_Chr6g0454301 27.991 443 286 11 2 415 260 698 3.82e-48 176
Msa0745400 MtrunA17_Chr6g0454301 32.143 196 120 4 230 415 5 197 3.00e-27 115
Msa0745400 MtrunA17_Chr2g0278711 26.316 437 284 14 2 407 8 437 1.48e-47 170
Msa0745400 MtrunA17_Chr8g0336331 25.835 449 300 10 2 423 7 449 2.98e-47 169
Msa0745400 MtrunA17_Chr6g0454131 27.111 450 293 13 3 423 8 451 3.27e-47 169
Msa0745400 MtrunA17_Chr3g0118711 26.923 442 283 12 2 410 10 444 3.80e-47 169
Msa0745400 MtrunA17_Chr3g0118691 25.799 438 293 10 2 410 12 446 4.11e-47 169
Msa0745400 MtrunA17_Chr6g0464881 29.291 437 260 15 4 415 10 422 4.79e-47 168
Msa0745400 MtrunA17_Chr6g0454331 26.906 446 289 12 3 415 5 446 9.88e-47 168
Msa0745400 MtrunA17_Chr6g0454141 26.549 452 293 13 2 418 7 454 2.84e-46 167
Msa0745400 MtrunA17_Chr6g0454361 27.991 443 286 12 3 415 9 448 3.83e-45 164
Msa0745400 MtrunA17_Chr5g0414321 29.567 416 254 13 6 407 12 402 4.62e-45 163
Msa0745400 MtrunA17_Chr4g0044511 30.444 473 262 22 6 430 41 494 6.16e-45 164
Msa0745400 MtrunA17_Chr6g0454121 26.682 446 287 12 3 415 8 446 6.42e-45 163
Msa0745400 MtrunA17_Chr7g0217881 27.610 431 270 11 2 406 7 421 6.51e-45 162
Msa0745400 MtrunA17_Chr3g0118661 25.747 435 287 11 2 406 10 438 7.28e-45 163
Msa0745400 MtrunA17_Chr5g0414331 29.157 415 257 12 6 407 14 404 7.59e-45 162
Msa0745400 MtrunA17_Chr7g0249931 28.387 465 283 17 9 446 44 485 8.29e-45 163
Msa0745400 MtrunA17_Chr3g0118771 24.116 481 325 14 2 448 18 492 1.21e-44 162
Msa0745400 MtrunA17_Chr4g0053501 27.623 467 300 13 6 455 12 457 3.18e-44 161
Msa0745400 MtrunA17_Chr6g0454291 26.923 442 292 11 3 415 5 444 3.90e-44 161
Msa0745400 MtrunA17_Chr6g0454201 26.327 452 295 13 3 423 9 453 1.20e-43 159
Msa0745400 MtrunA17_Chr3g0098111 27.191 445 267 17 6 414 10 433 2.77e-43 159
Msa0745400 MtrunA17_Chr4g0053321 27.376 442 282 13 6 420 27 456 7.21e-43 158
Msa0745400 MtrunA17_Chr1g0207861 29.176 425 240 17 6 394 9 408 2.05e-42 156
Msa0745400 MtrunA17_Chr4g0050341 25.951 447 292 12 3 415 17 458 2.57e-42 156
Msa0745400 MtrunA17_Chr6g0452771 26.432 454 294 15 2 423 7 452 3.28e-42 155
Msa0745400 MtrunA17_Chr5g0412111 25.597 461 306 9 1 432 1 453 8.54e-42 154
Msa0745400 MtrunA17_Chr6g0454151 25.618 445 294 12 2 415 7 445 9.75e-42 154
Msa0745400 MtrunA17_Chr5g0412131 26.667 420 284 10 4 403 11 426 1.19e-41 154
Msa0745400 MtrunA17_Chr6g0464841 29.500 400 245 13 7 389 13 392 1.57e-41 153
Msa0745400 MtrunA17_Chr8g0377921 28.859 447 262 16 6 424 5 423 3.47e-41 152
Msa0745400 MtrunA17_Chr4g0032331 28.966 435 251 18 6 410 9 415 3.98e-41 152
Msa0745400 MtrunA17_Chr6g0464871 29.040 396 252 9 7 389 25 404 7.68e-41 152
Msa0745400 MtrunA17_Chr6g0464861 28.676 408 243 13 4 389 10 391 2.33e-40 150
Msa0745400 MtrunA17_Chr6g0454351 25.771 454 283 15 2 421 9 442 3.16e-40 150
Msa0745400 MtrunA17_Chr7g0249981 27.451 408 259 12 1 389 15 404 1.03e-39 149
Msa0745400 MtrunA17_Chr6g0454251 28.030 396 250 12 2 366 4 395 1.07e-39 147
Msa0745400 MtrunA17_Chr5g0423981 26.106 452 288 14 3 435 8 432 2.62e-39 147
Msa0745400 MtrunA17_Chr8g0366391 30.101 495 264 22 5 444 10 477 5.19e-39 147
Msa0745400 MtrunA17_Chr8g0365811 27.146 431 253 17 6 397 10 418 1.14e-38 149
Msa0745400 MtrunA17_Chr8g0365811 26.869 428 263 17 2 397 491 900 1.81e-38 149
Msa0745400 MtrunA17_Chr5g0431441 27.294 425 279 12 6 418 19 425 2.16e-38 145
Msa0745400 MtrunA17_Chr1g0207981 26.512 430 276 12 6 406 14 432 3.52e-38 144
Msa0745400 MtrunA17_Chr7g0243681 27.586 406 259 13 6 388 12 405 8.02e-38 144
Msa0745400 MtrunA17_Chr1g0161351 27.529 425 247 17 6 394 38 437 8.33e-38 144
Msa0745400 MtrunA17_Chr5g0429711 27.882 373 242 11 74 429 87 449 1.72e-37 142
Msa0745400 MtrunA17_Chr4g0044481 32.020 406 217 18 6 388 28 397 2.31e-37 141
Msa0745400 MtrunA17_Chr5g0401721 26.966 445 285 14 6 418 9 445 2.57e-37 142
Msa0745400 MtrunA17_Chr3g0118751 22.899 476 308 15 2 448 3 448 3.20e-37 141
Msa0745400 MtrunA17_Chr5g0412101 25.000 420 292 9 4 403 11 427 3.85e-37 141
Msa0745400 MtrunA17_Chr4g0044501 28.604 444 263 16 6 410 11 439 3.96e-37 142
Msa0745400 MtrunA17_Chr1g0207951 26.033 484 287 18 6 447 657 1111 7.61e-37 144
Msa0745400 MtrunA17_Chr1g0207951 25.740 439 285 14 6 423 125 543 1.27e-35 140
Msa0745400 MtrunA17_Chr8g0373301 31.593 364 201 13 88 422 94 438 9.75e-37 140
Msa0745400 MtrunA17_Chr8g0339601 37.075 294 139 14 161 422 23 302 1.40e-36 137
Msa0745400 MtrunA17_Chr8g0377941 27.169 438 275 15 6 415 8 429 1.63e-36 140
Msa0745400 MtrunA17_Chr1g0207971 25.173 433 284 13 6 418 9 421 1.05e-35 137
Msa0745400 MtrunA17_Chr6g0463851 28.270 474 253 22 8 421 14 460 1.25e-35 137
Msa0745400 MtrunA17_Chr4g0060511 29.147 422 241 17 6 388 12 414 1.42e-35 137
Msa0745400 MtrunA17_Chr7g0243771 27.913 412 252 16 6 388 7 402 3.34e-35 136
Msa0745400 MtrunA17_Chr5g0442541 26.609 466 274 14 1 421 1 443 5.63e-35 135
Msa0745400 MtrunA17_Chr7g0243801 28.155 412 251 16 6 388 8 403 6.80e-35 135
Msa0745400 MtrunA17_Chr8g0336741 31.755 359 198 13 107 435 119 460 7.89e-35 135
Msa0745400 MtrunA17_Chr8g0339461 32.865 356 180 15 104 422 110 443 8.74e-35 135
Msa0745400 MtrunA17_Chr6g0462531 28.194 454 268 17 3 424 2 429 8.82e-35 135
Msa0745400 MtrunA17_Chr7g0265141 30.952 420 236 16 7 390 11 412 9.84e-35 135
Msa0745400 MtrunA17_Chr7g0275681 27.403 489 290 19 4 443 11 483 1.12e-34 135
Msa0745400 MtrunA17_Chr7g0243861 28.744 414 250 16 6 388 15 414 1.14e-34 135
Msa0745400 MtrunA17_Chr7g0275511 28.097 452 263 16 4 415 14 443 1.17e-34 135
Msa0745400 MtrunA17_Chr4g0066221 27.447 470 260 17 8 421 14 458 1.36e-34 135
Msa0745400 MtrunA17_Chr4g0066261 28.936 470 269 18 1 421 6 459 1.45e-34 134
Msa0745400 MtrunA17_Chr6g0462521 31.858 339 174 14 107 424 113 415 1.54e-34 134
Msa0745400 MtrunA17_Chr7g0250001 26.463 393 258 11 11 390 12 386 2.24e-34 134
Msa0745400 MtrunA17_Chr2g0294921 26.170 470 276 15 1 420 155 603 2.70e-34 135
Msa0745400 MtrunA17_Chr5g0426401 30.435 276 172 6 162 420 14 286 2.83e-34 130
Msa0745400 MtrunA17_Chr8g0339451 31.675 382 201 17 78 422 77 435 3.33e-34 133
Msa0745400 MtrunA17_Chr7g0243631 28.162 419 249 18 6 390 14 414 3.47e-34 134
Msa0745400 MtrunA17_Chr7g0232401 29.970 337 203 12 107 422 115 439 4.09e-34 133
Msa0745400 MtrunA17_Chr1g0207931 27.251 411 204 16 6 390 93 434 1.09e-33 132
Msa0745400 MtrunA17_Chr7g0243951 28.058 417 248 17 6 388 12 410 1.47e-33 132
Msa0745400 MtrunA17_Chr8g0374941 28.139 462 250 18 9 414 15 450 1.51e-33 134
Msa0745400 MtrunA17_Chr8g0374941 27.511 458 258 17 9 414 480 915 1.19e-30 125
Msa0745400 MtrunA17_Chr8g0374941 27.706 462 252 19 9 414 953 1388 1.35e-30 125
Msa0745400 MtrunA17_Chr4g0044521 27.876 452 271 16 6 420 10 443 1.87e-33 131
Msa0745400 MtrunA17_Chr7g0265041 26.295 502 298 20 4 449 10 495 3.17e-33 131
Msa0745400 MtrunA17_Chr8g0339631 33.621 348 185 15 104 422 110 440 3.39e-33 130
Msa0745400 MtrunA17_Chr6g0462551 28.969 359 207 12 90 426 99 431 5.17e-33 130
Msa0745400 MtrunA17_Chr6g0462571 29.178 353 209 10 90 424 97 426 5.30e-33 130
Msa0745400 MtrunA17_Chr7g0265151 26.432 454 273 16 2 408 4 443 6.63e-33 130
Msa0745400 MtrunA17_Chr5g0419761 27.742 465 266 19 7 427 11 449 7.37e-33 130
Msa0745400 MtrunA17_Chr6g0462541 31.176 340 183 14 107 424 118 428 1.35e-32 129
Msa0745400 MtrunA17_Chr8g0374931 27.140 479 294 17 1 446 6 462 1.72e-32 129
Msa0745400 MtrunA17_Chr8g0336731 31.548 336 188 11 107 415 138 458 1.73e-32 129
Msa0745400 MtrunA17_Chr4g0014061 27.765 425 245 18 3 392 6 403 2.08e-32 128
Msa0745400 MtrunA17_Chr1g0153451 31.118 331 186 11 107 410 112 427 2.28e-32 128
Msa0745400 MtrunA17_Chr8g0361371 29.118 340 198 11 104 421 113 431 2.32e-32 128
Msa0745400 MtrunA17_Chr7g0243931 27.924 419 247 18 6 388 18 417 2.85e-32 128
Msa0745400 MtrunA17_Chr7g0232331 37.209 215 106 7 231 425 235 440 3.81e-32 127
Msa0745400 MtrunA17_Chr7g0265051 27.386 482 263 21 2 420 4 461 6.14e-32 127
Msa0745400 MtrunA17_Chr8g0336651 31.138 334 187 10 107 412 112 430 6.96e-32 129
Msa0745400 MtrunA17_Chr8g0336651 37.963 216 101 9 225 415 1004 1211 1.83e-26 113
Msa0745400 MtrunA17_Chr8g0336651 32.083 240 126 7 184 410 523 738 1.09e-24 107
Msa0745400 MtrunA17_Chr3g0118721 27.273 297 193 9 174 453 4 294 7.49e-32 123
Msa0745400 MtrunA17_Chr8g0347281 25.223 448 268 15 4 416 17 432 8.27e-32 127
Msa0745400 MtrunA17_Chr6g0486251 32.922 243 129 7 193 410 195 428 1.61e-31 125
Msa0745400 MtrunA17_Chr6g0486201 32.922 243 129 7 193 410 195 428 1.61e-31 125
Msa0745400 MtrunA17_Chr5g0429681 25.734 443 282 16 2 411 41 469 1.75e-31 126
Msa0745400 MtrunA17_Chr7g0243781 27.252 444 259 21 6 407 10 431 1.87e-31 125
Msa0745400 MtrunA17_Chr1g0207831 26.161 409 260 13 6 390 9 399 1.94e-31 125
Msa0745400 MtrunA17_Chr5g0419771 27.434 452 268 17 6 410 37 475 2.06e-31 126
Msa0745400 MtrunA17_Chr4g0066171 27.195 467 259 20 1 429 16 439 2.46e-31 125
Msa0745400 MtrunA17_Chr8g0374901 27.015 459 259 17 8 414 15 449 3.26e-31 125
Msa0745400 MtrunA17_Chr7g0232391 33.208 265 137 9 200 433 196 451 3.55e-31 125
Msa0745400 MtrunA17_Chr6g0454271 31.020 245 149 9 177 406 7 246 3.91e-31 121
Msa0745400 MtrunA17_Chr4g0066131 26.932 427 254 14 6 397 14 417 4.35e-31 125
Msa0745400 MtrunA17_Chr7g0265101 26.860 484 265 22 2 420 4 463 5.53e-31 124
Msa0745400 MtrunA17_Chr5g0393591 23.690 477 287 17 6 454 18 445 5.63e-31 124
Msa0745400 MtrunA17_Chr8g0339441 39.683 189 88 6 256 422 217 401 5.90e-31 124
Msa0745400 MtrunA17_Chr8g0382021 26.376 436 274 10 10 420 39 452 5.90e-31 124
Msa0745400 MtrunA17_Chr2g0294931 27.451 459 272 18 6 429 12 444 6.15e-31 124
Msa0745400 MtrunA17_Chr8g0350881 26.709 468 266 18 1 414 7 451 6.25e-31 124
Msa0745400 MtrunA17_Chr5g0416741 26.244 442 287 12 6 420 14 443 7.47e-31 124
Msa0745400 MtrunA17_Chr4g0066151 25.855 468 267 17 6 424 19 455 8.20e-31 124
Msa0745400 MtrunA17_Chr6g0454221 33.333 198 118 4 229 415 4 198 1.22e-30 120
Msa0745400 MtrunA17_Chr4g0011051 26.569 478 271 21 4 420 6 464 1.48e-30 123
Msa0745400 MtrunA17_Chr8g0374971 25.551 454 277 15 1 410 7 443 2.26e-30 122
Msa0745400 MtrunA17_Chr8g0334831 27.826 345 199 10 107 421 114 438 2.96e-30 122
Msa0745400 MtrunA17_Chr5g0442491 26.291 426 259 15 1 390 1 407 3.87e-30 122
Msa0745400 MtrunA17_Chr8g0336691 30.383 339 190 10 107 415 1025 1347 4.85e-30 124
Msa0745400 MtrunA17_Chr8g0336691 30.120 332 191 10 107 410 119 437 6.42e-29 120
Msa0745400 MtrunA17_Chr8g0336691 39.062 192 92 8 230 415 708 880 5.00e-24 105
Msa0745400 MtrunA17_Chr7g0249961 38.922 167 87 4 232 389 37 197 5.63e-30 117
Msa0745400 MtrunA17_Chr5g0431401 23.557 433 291 11 6 418 11 423 6.99e-30 120
Msa0745400 MtrunA17_Chr5g0431371 25.057 439 285 12 6 423 11 426 7.85e-30 120
Msa0745400 MtrunA17_Chr5g0442601 25.902 471 282 17 1 421 400 853 9.05e-30 122
Msa0745400 MtrunA17_Chr5g0442601 28.000 300 166 9 108 386 66 336 2.50e-21 97.4
Msa0745400 MtrunA17_Chr7g0218311 27.426 474 254 19 1 415 11 453 9.35e-30 121
Msa0745400 MtrunA17_Chr5g0428081 27.253 455 247 17 8 407 14 439 1.04e-29 120
Msa0745400 MtrunA17_Chr7g0232341 33.977 259 132 9 193 420 192 442 1.22e-29 120
Msa0745400 MtrunA17_Chr1g0173121 35.514 214 110 8 256 446 256 464 1.54e-29 120
Msa0745400 MtrunA17_Chr5g0431421 24.424 434 286 11 6 418 11 423 2.29e-29 119
Msa0745400 MtrunA17_Chr5g0442561 27.338 417 266 11 1 391 1 406 3.36e-29 119
Msa0745400 MtrunA17_Chr4g0072761 32.680 306 174 13 142 432 146 434 3.42e-29 119
Msa0745400 MtrunA17_Chr6g0449931 27.225 382 225 12 78 427 84 444 4.11e-29 119
Msa0745400 MtrunA17_Chr2g0329111 27.098 417 250 17 2 382 4 402 4.48e-29 119
Msa0745400 MtrunA17_Chr4g0066201 28.438 429 234 20 1 392 13 405 4.66e-29 119
Msa0745400 MtrunA17_Chr8g0335161 25.056 443 285 15 2 416 3 426 6.57e-29 118
Msa0745400 MtrunA17_Chr6g0463891 26.437 435 260 13 6 398 13 429 6.88e-29 119
Msa0745400 MtrunA17_Chr5g0442581 25.355 422 270 13 1 390 1 409 8.85e-29 119
Msa0745400 MtrunA17_Chr7g0235051 27.553 421 228 18 6 396 12 385 1.05e-28 117
Msa0745400 MtrunA17_Chr3g0122001 26.049 453 273 18 7 424 8 433 2.77e-28 118
Msa0745400 MtrunA17_Chr3g0122001 25.664 452 275 19 7 424 488 912 6.01e-27 114
Msa0745400 MtrunA17_Chr1g0179901 27.669 459 259 20 6 410 17 456 3.15e-28 117
Msa0745400 MtrunA17_Chr6g0459311 35.961 203 103 6 229 416 241 431 3.67e-28 116
Msa0745400 MtrunA17_Chr4g0072771 25.926 405 259 14 6 391 26 408 4.12e-28 116
Msa0745400 MtrunA17_Chr1g0159551 37.714 175 87 5 255 410 252 423 4.80e-28 115
Msa0745400 MtrunA17_Chr7g0243871 24.757 412 263 15 6 390 10 401 6.12e-28 115
Msa0745400 MtrunA17_Chr5g0442521 27.010 485 282 21 1 432 1 466 6.39e-28 115
Msa0745400 MtrunA17_Chr7g0232411 32.685 257 130 10 200 425 196 440 6.66e-28 115
Msa0745400 MtrunA17_Chr8g0347271 23.043 447 279 13 4 416 18 433 6.90e-28 115
Msa0745400 MtrunA17_Chr5g0448521 25.000 480 284 19 1 429 1 455 7.69e-28 115
Msa0745400 MtrunA17_Chr8g0355011 25.938 320 193 7 104 415 46 329 8.35e-28 114
Msa0745400 MtrunA17_Chr8g0334861 35.443 237 116 10 221 429 225 452 1.53e-27 114
Msa0745400 MtrunA17_Chr6g0463861 26.164 451 274 18 8 428 14 435 1.65e-27 114
Msa0745400 MtrunA17_Chr7g0243761 23.853 436 286 15 6 410 12 432 3.20e-27 113
Msa0745400 MtrunA17_Chr5g0431361 22.629 464 313 13 6 445 13 454 4.78e-27 112
Msa0745400 MtrunA17_Chr3g0121991 25.635 433 272 15 7 407 81 495 5.23e-27 114
Msa0745400 MtrunA17_Chr4g0066281 26.681 461 251 21 8 428 15 428 9.15e-27 112
Msa0745400 MtrunA17_Chr5g0409591 25.000 472 263 17 6 411 5 451 1.16e-26 112
Msa0745400 MtrunA17_Chr7g0265111 29.557 406 233 20 7 376 41 429 1.22e-26 112
Msa0745400 MtrunA17_Chr5g0416821 26.509 464 264 19 6 420 15 450 1.26e-26 112
Msa0745400 MtrunA17_Chr3g0106231 23.679 473 305 16 6 453 19 460 2.00e-26 111
Msa0745400 MtrunA17_Chr8g0334851 27.838 370 207 16 88 418 96 444 3.05e-26 110
Msa0745400 MtrunA17_Chr8g0355221 23.673 490 302 20 7 444 17 486 4.02e-26 110
Msa0745400 MtrunA17_Chr2g0294941 29.041 365 212 15 107 446 18 360 4.34e-26 108
Msa0745400 MtrunA17_Chr7g0232311 30.108 279 153 9 168 422 169 429 5.21e-26 110
Msa0745400 MtrunA17_Chr1g0165701 25.111 450 274 17 7 418 17 441 5.68e-26 110
Msa0745400 MtrunA17_Chr1g0196851 25.115 434 273 15 6 410 50 460 1.18e-25 109
Msa0745400 MtrunA17_Chr5g0410941 25.926 459 283 16 6 424 24 465 1.54e-25 108
Msa0745400 MtrunA17_Chr5g0442511 28.571 357 188 14 108 429 157 481 1.82e-25 108
Msa0745400 MtrunA17_Chr5g0401851 23.789 454 284 14 7 420 12 443 1.93e-25 108
Msa0745400 MtrunA17_Chr4g0029131 27.027 444 261 20 6 415 13 427 2.96e-25 108
Msa0745400 MtrunA17_Chr1g0153461 37.079 178 89 5 254 410 1 176 6.47e-25 102
Msa0745400 MtrunA17_Chr6g0454171 31.980 197 105 5 229 415 100 277 6.91e-25 104
Msa0745400 MtrunA17_Chr8g0335141 30.328 244 139 8 192 416 197 428 8.98e-25 106
Msa0745400 MtrunA17_Chr7g0243851 24.938 405 235 14 6 388 12 369 2.49e-24 105
Msa0745400 MtrunA17_Chr2g0302961 24.900 502 286 26 1 446 1 467 2.50e-24 105
Msa0745400 MtrunA17_Chr5g0440421 32.877 219 112 8 256 446 284 495 3.92e-24 104
Msa0745400 MtrunA17_Chr7g0232351 35.437 206 97 8 178 359 179 372 7.89e-24 102
Msa0745400 MtrunA17_Chr4g0029151 25.624 441 271 18 6 415 21 435 8.37e-24 103
Msa0745400 MtrunA17_Chr7g0241781 26.593 455 254 20 2 427 6 409 9.61e-24 103
Msa0745400 MtrunA17_Chr2g0302991 25.542 415 248 17 71 446 72 464 4.84e-23 101
Msa0745400 MtrunA17_Chr8g0369341 26.835 436 241 19 2 390 5 409 7.94e-23 100
Msa0745400 MtrunA17_Chr8g0367221 25.815 399 262 12 6 382 1289 1675 2.04e-22 100
Msa0745400 MtrunA17_Chr8g0367221 27.818 417 239 20 6 387 13 402 5.71e-22 99.8
Msa0745400 MtrunA17_Chr8g0367221 27.617 449 252 23 6 410 799 1218 3.64e-21 97.1
Msa0745400 MtrunA17_Chr8g0357361 38.095 147 80 6 256 398 117 256 3.02e-22 95.9
Msa0745400 MtrunA17_Chr7g0243811 27.384 409 240 18 17 393 1 384 3.12e-22 98.2
Msa0745400 MtrunA17_Chr8g0361411 26.303 422 250 17 10 400 13 404 3.16e-22 99.0
Msa0745400 MtrunA17_Chr7g0243611 28.283 297 168 13 111 388 1 271 1.40e-21 94.7
Msa0745400 MtrunA17_Chr4g0040711 39.264 163 85 6 259 410 261 420 2.84e-21 95.9
Msa0745400 MtrunA17_Chr7g0241801 27.335 439 238 23 2 410 6 393 4.11e-21 95.5
Msa0745400 MtrunA17_Chr8g0336261 33.077 130 82 2 285 412 6 132 4.72e-21 89.0
Msa0745400 MtrunA17_Chr3g0079731 25.705 319 180 9 108 388 117 416 5.25e-21 95.5
Msa0745400 MtrunA17_Chr5g0420801 24.576 472 302 18 2 449 5 446 5.28e-21 95.1
Msa0745400 MtrunA17_Chr7g0243911 37.063 143 82 4 252 388 17 157 9.01e-21 90.9
Msa0745400 MtrunA17_Chr5g0403641 31.641 256 121 11 198 410 222 466 1.26e-20 94.4
Msa0745400 MtrunA17_Chr2g0283041 34.653 202 111 8 259 447 258 451 1.41e-20 94.0
Msa0745400 MtrunA17_Chr8g0336251 34.171 199 119 7 255 444 267 462 2.09e-20 93.6
Msa0745400 MtrunA17_Chr8g0370941 33.537 164 79 3 255 389 260 422 2.44e-20 93.6
Msa0745400 MtrunA17_Chr8g0336321 34.171 199 119 7 255 444 267 462 3.22e-20 92.8
Msa0745400 MtrunA17_Chr2g0278721 34.872 195 111 8 226 410 753 941 9.10e-20 92.4
Msa0745400 MtrunA17_Chr2g0278721 35.156 128 75 5 259 382 274 397 3.84e-14 75.1
Msa0745400 MtrunA17_Chr7g0243711 37.226 137 80 3 257 388 108 243 1.06e-19 89.7
Msa0745400 MtrunA17_Chr4g0040691 33.333 207 113 8 222 414 229 424 6.21e-19 89.0
Msa0745400 MtrunA17_Chr5g0432731 26.087 276 171 8 162 427 6 258 6.29e-19 87.0
Msa0745400 MtrunA17_Chr2g0307961 23.400 453 268 16 4 415 12 426 8.94e-19 88.6
Msa0745400 MtrunA17_Chr7g0250021 26.852 324 208 12 9 318 16 324 2.55e-18 85.9
Msa0745400 MtrunA17_Chr6g0454371 31.034 145 87 4 285 423 6 143 3.63e-18 82.0
Msa0745400 MtrunA17_Chr7g0231631 29.469 207 121 5 224 420 28 219 5.83e-18 84.0
Msa0745400 MtrunA17_Chr5g0427571 38.346 133 75 4 255 382 101 231 1.05e-17 83.6
Msa0745400 MtrunA17_Chr2g0319761 27.460 437 258 19 6 409 9 419 1.08e-17 85.1
Msa0745400 MtrunA17_Chr1g0207881 45.333 75 41 0 316 390 247 321 1.89e-17 84.0
Msa0745400 MtrunA17_Chr6g0464091 25.486 463 276 21 3 432 15 441 2.29e-17 84.3
Msa0745400 MtrunA17_Chr4g0066141 42.593 108 51 3 311 407 200 307 4.84e-17 82.4
Msa0745400 MtrunA17_Chr4g0042931 32.386 176 95 6 258 420 263 427 5.16e-17 83.2
Msa0745400 MtrunA17_Chr3g0106251 27.155 232 155 5 162 390 8 228 1.59e-16 80.5
Msa0745400 MtrunA17_Chr4g0042891 36.306 157 84 6 257 401 265 417 1.84e-16 81.6
Msa0745400 MtrunA17_Chr3g0092031 38.655 119 65 5 259 373 6 120 2.23e-16 77.8
Msa0745400 MtrunA17_Chr6g0454231 27.604 192 93 6 229 414 30 181 2.99e-16 80.9
Msa0745400 MtrunA17_Chr2g0319791 34.146 205 105 9 222 410 229 419 6.75e-16 79.7
Msa0745400 MtrunA17_Chr2g0302851 33.750 160 91 7 222 373 232 384 1.06e-15 79.0
Msa0745400 MtrunA17_Chr6g0466831 23.472 409 264 16 6 390 19 402 1.15e-15 79.0
Msa0745400 MtrunA17_Chr5g0431431 21.990 382 226 11 6 383 11 324 1.51e-15 77.8
Msa0745400 MtrunA17_Chr4g0039881 38.136 118 67 4 259 373 246 360 1.79e-15 78.2
Msa0745400 MtrunA17_Chr2g0319751 39.869 153 78 6 257 402 734 879 2.37e-15 79.0
Msa0745400 MtrunA17_Chr2g0319751 32.000 175 88 7 257 422 257 409 1.86e-13 72.8
Msa0745400 MtrunA17_Chr6g0466841 24.205 409 261 18 6 390 19 402 2.51e-15 77.8
Msa0745400 MtrunA17_Chr3g0079711 32.105 190 94 9 283 442 2 186 2.74e-15 74.3
Msa0745400 MtrunA17_Chr4g0069611 32.919 161 95 6 259 410 269 425 1.85e-14 75.1
Msa0745400 MtrunA17_Chr8g0337381 40.659 91 49 2 326 411 2 92 4.45e-14 69.3
Msa0745400 MtrunA17_Chr2g0278741 35.156 128 75 5 259 382 356 479 4.62e-14 74.3
Msa0745400 MtrunA17_Chr2g0319731 33.146 178 102 7 259 422 276 450 6.13e-14 73.6
Msa0745400 MtrunA17_Chr6g0453981 26.829 205 134 7 114 304 2 204 8.75e-14 70.9
Msa0745400 MtrunA17_Chr2g0321331 34.545 165 85 8 266 422 93 242 2.50e-13 70.1
Msa0745400 MtrunA17_Chr6g0482061 27.444 266 167 10 163 408 181 440 5.13e-13 70.9
Msa0745400 MtrunA17_Chr2g0319801 24.000 450 284 18 6 422 9 433 4.46e-12 67.8
Msa0745400 MtrunA17_Chr5g0426411 27.879 165 108 6 3 157 10 173 5.35e-12 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0745400 AT3G22250.1 53.273 443 182 8 2 424 5 442 1.79e-165 474
Msa0745400 AT3G02100.1 32.833 466 269 15 1 449 9 447 9.07e-67 221
Msa0745400 AT1G22400.1 28.764 445 280 14 2 415 10 448 2.58e-57 197
Msa0745400 AT3G11340.1 29.241 448 281 13 3 432 7 436 1.53e-55 191
Msa0745400 AT1G22340.1 27.593 482 310 15 2 449 10 486 3.29e-54 188
Msa0745400 AT1G22360.1 28.139 462 298 13 2 433 7 464 5.97e-53 185
Msa0745400 AT1G22380.1 28.345 441 286 10 2 415 10 447 7.78e-53 185
Msa0745400 AT5G59590.1 28.637 433 288 10 1 422 6 428 2.29e-52 182
Msa0745400 AT5G05870.1 29.890 455 274 16 6 432 9 446 3.08e-52 182
Msa0745400 AT1G22370.2 27.512 418 268 12 2 392 10 419 1.19e-51 181
Msa0745400 AT1G22360.2 29.117 419 265 12 2 392 7 421 1.72e-50 178
Msa0745400 AT2G31790.1 28.738 428 268 10 2 407 5 417 1.48e-49 175
Msa0745400 AT5G59580.1 28.972 428 282 11 6 422 10 426 2.94e-49 174
Msa0745400 AT2G23250.1 29.250 400 257 14 14 407 7 386 9.19e-49 173
Msa0745400 AT2G43820.1 30.118 425 247 15 2 407 4 397 2.55e-46 166
Msa0745400 AT3G46670.1 27.640 445 283 15 6 429 10 436 2.71e-46 166
Msa0745400 AT1G78270.1 26.185 443 293 13 2 415 10 447 3.77e-45 164
Msa0745400 AT1G05675.1 28.941 425 258 13 6 407 7 410 7.59e-45 162
Msa0745400 AT2G43840.2 27.506 429 255 14 6 407 8 407 1.04e-44 162
Msa0745400 AT1G05680.1 27.529 425 273 11 6 410 7 416 1.32e-44 162
Msa0745400 AT4G14090.1 26.767 467 295 15 2 443 10 454 2.80e-44 161
Msa0745400 AT2G26480.1 28.369 423 273 12 1 410 4 409 4.42e-44 160
Msa0745400 AT2G36970.1 28.297 417 259 14 2 390 7 411 4.51e-44 161
Msa0745400 AT2G43840.1 28.009 432 249 15 6 407 8 407 7.42e-44 160
Msa0745400 AT3G55700.1 29.605 456 268 18 6 431 9 441 7.47e-44 160
Msa0745400 AT3G46660.1 27.002 437 282 14 6 422 15 434 3.73e-43 158
Msa0745400 AT2G31750.1 29.103 457 275 18 2 429 6 442 5.03e-43 157
Msa0745400 AT2G31750.2 28.306 484 294 20 2 455 6 466 6.51e-43 158
Msa0745400 AT2G28080.1 26.376 436 287 13 9 418 22 449 1.15e-42 157
Msa0745400 AT2G23260.1 27.873 409 266 13 6 400 11 404 4.92e-42 155
Msa0745400 AT3G46700.1 26.623 462 305 16 1 447 5 447 7.12e-42 154
Msa0745400 AT4G15490.1 25.261 479 307 17 6 449 9 471 7.67e-41 152
Msa0745400 AT3G55710.1 29.120 443 265 14 3 418 7 427 5.33e-40 149
Msa0745400 AT3G46680.1 26.484 438 290 11 2 422 6 428 9.33e-40 149
Msa0745400 AT5G05900.1 27.455 448 287 15 6 432 9 439 1.83e-39 148
Msa0745400 AT5G05880.1 25.446 448 297 14 6 432 9 440 3.66e-39 147
Msa0745400 AT5G05860.1 25.346 434 290 12 6 422 10 426 5.07e-39 147
Msa0745400 AT3G46720.1 26.047 430 293 11 2 422 6 419 5.85e-39 146
Msa0745400 AT1G24100.1 27.295 414 241 13 6 389 12 395 2.19e-38 145
Msa0745400 AT1G05530.1 28.700 446 263 17 1 414 1 423 1.11e-37 143
Msa0745400 AT3G21560.1 25.000 440 280 14 4 415 11 428 1.87e-37 143
Msa0745400 AT2G15490.3 28.066 424 247 14 6 390 8 412 2.20e-37 142
Msa0745400 AT2G15480.1 28.941 425 242 16 6 390 11 415 4.38e-37 142
Msa0745400 AT2G15480.2 28.941 425 242 16 6 390 11 415 4.78e-37 142
Msa0745400 AT4G15550.1 26.941 438 267 17 4 411 12 426 9.33e-37 141
Msa0745400 AT3G46690.1 26.420 405 266 12 1 390 5 392 1.48e-36 140
Msa0745400 AT4G34131.1 27.103 428 257 14 2 392 7 416 1.63e-36 140
Msa0745400 AT4G15480.1 26.667 435 276 15 6 416 20 435 4.45e-36 139
Msa0745400 AT5G38040.1 26.667 465 275 19 13 444 18 449 4.90e-36 138
Msa0745400 AT4G34135.1 28.471 425 250 17 2 390 8 414 6.52e-36 139
Msa0745400 AT3G46650.1 27.293 447 270 16 3 429 8 419 1.21e-35 137
Msa0745400 AT2G15490.1 27.869 427 247 14 6 390 8 415 1.38e-35 138
Msa0745400 AT1G05560.1 24.895 478 308 15 1 449 1 456 1.53e-35 137
Msa0745400 AT2G36800.1 32.227 422 226 22 7 389 14 414 2.22e-35 137
Msa0745400 AT1G05560.2 24.895 478 308 15 1 449 51 506 2.90e-35 137
Msa0745400 AT4G15500.1 25.624 441 288 16 4 420 8 432 6.20e-35 135
Msa0745400 AT5G38010.1 28.319 452 259 16 6 422 11 432 9.43e-35 135
Msa0745400 AT3G21790.1 25.447 503 304 18 6 455 5 489 1.28e-34 135
Msa0745400 AT3G53160.1 29.148 446 248 21 7 413 10 426 2.04e-34 134
Msa0745400 AT2G36770.1 27.490 502 283 24 7 448 16 496 2.34e-34 134
Msa0745400 AT1G22370.1 30.364 247 151 7 162 392 8 249 2.46e-34 130
Msa0745400 AT3G21760.1 26.625 477 284 16 6 429 5 468 8.98e-34 132
Msa0745400 AT4G01070.1 26.652 469 292 15 2 432 5 459 1.17e-33 132
Msa0745400 AT2G30140.1 26.136 440 275 13 6 420 14 428 1.29e-33 132
Msa0745400 AT2G36760.1 26.747 501 288 21 7 448 16 496 3.99e-33 131
Msa0745400 AT2G30140.2 25.968 439 276 13 6 420 14 427 1.36e-32 129
Msa0745400 AT5G17050.1 26.969 419 273 16 6 406 13 416 7.49e-32 127
Msa0745400 AT3G21800.1 25.301 498 299 20 1 446 1 477 9.22e-32 127
Msa0745400 AT1G01390.1 27.686 484 277 18 4 438 7 466 1.59e-31 126
Msa0745400 AT1G01390.2 27.479 484 278 17 4 438 24 483 1.72e-31 126
Msa0745400 AT3G53150.1 26.667 420 256 17 7 390 24 427 2.07e-31 126
Msa0745400 AT2G36780.1 28.226 496 282 20 7 446 16 493 3.59e-31 125
Msa0745400 AT5G05890.1 23.841 453 302 13 6 432 9 444 7.16e-31 124
Msa0745400 AT3G21750.1 25.813 492 284 18 6 444 5 468 1.76e-30 123
Msa0745400 AT2G30150.2 26.777 422 273 13 6 416 14 410 2.81e-30 122
Msa0745400 AT2G29740.1 28.972 428 238 18 6 391 9 412 3.15e-30 122
Msa0745400 AT3G21780.1 25.720 486 301 19 6 449 5 472 5.14e-30 122
Msa0745400 AT4G34138.1 27.123 424 250 19 7 391 13 416 5.52e-30 122
Msa0745400 AT2G30150.1 26.730 419 271 13 9 416 1 394 8.72e-30 120
Msa0745400 AT2G36750.1 27.594 424 241 19 7 389 12 410 1.81e-29 120
Msa0745400 AT2G36790.1 29.026 503 273 25 7 448 15 494 2.05e-29 120
Msa0745400 AT4G15280.1 23.469 490 307 17 6 446 5 475 4.25e-29 119
Msa0745400 AT4G15280.2 23.469 490 307 17 6 446 37 507 5.42e-29 119
Msa0745400 AT5G17030.1 34.146 205 121 7 209 406 218 415 5.66e-29 119
Msa0745400 AT1G01420.2 26.526 475 280 19 4 432 10 461 6.75e-29 119
Msa0745400 AT1G01420.1 26.526 475 280 19 4 432 7 458 6.88e-29 119
Msa0745400 AT5G03490.1 27.231 437 274 19 2 414 16 432 1.49e-28 117
Msa0745400 AT4G15260.1 25.606 371 226 12 111 446 1 356 2.76e-28 115
Msa0745400 AT2G29750.1 30.473 338 198 15 104 426 125 440 3.11e-28 117
Msa0745400 AT1G07260.1 24.777 448 284 16 6 420 7 434 2.23e-27 114
Msa0745400 AT5G17040.2 37.255 153 91 3 256 406 148 297 2.44e-27 112
Msa0745400 AT5G17040.1 33.158 190 116 5 256 437 250 436 3.51e-27 113
Msa0745400 AT5G12890.1 36.275 204 106 7 230 415 250 447 1.75e-26 112
Msa0745400 AT1G10400.1 25.576 434 282 14 1 407 3 422 1.95e-26 111
Msa0745400 AT1G30530.1 38.312 154 88 4 256 408 261 408 2.59e-26 111
Msa0745400 AT5G49690.1 37.629 194 105 7 222 408 233 417 2.19e-25 108
Msa0745400 AT1G07250.1 34.975 203 118 6 190 382 203 401 2.63e-25 108
Msa0745400 AT3G16520.1 25.373 335 219 11 103 418 112 434 2.72e-25 108
Msa0745400 AT3G16520.2 25.373 335 219 11 103 418 112 434 3.17e-25 107
Msa0745400 AT3G16520.3 25.373 335 219 11 103 418 112 434 3.26e-25 108
Msa0745400 AT5G66690.1 33.478 230 114 7 230 429 234 454 5.67e-25 107
Msa0745400 AT2G29730.1 37.278 169 92 5 229 391 239 399 2.48e-24 105
Msa0745400 AT2G18560.1 35.349 215 106 8 230 422 148 351 7.66e-24 103
Msa0745400 AT3G50740.1 37.222 180 84 6 230 389 239 409 9.28e-24 103
Msa0745400 AT2G18570.1 33.333 231 116 8 230 432 238 458 1.31e-23 103
Msa0745400 AT1G73880.1 33.333 243 142 9 196 426 206 440 1.72e-23 103
Msa0745400 AT5G65550.1 38.961 154 87 4 222 373 236 384 2.92e-23 102
Msa0745400 AT5G26310.1 33.171 205 104 7 230 410 234 429 4.16e-23 102
Msa0745400 AT1G51210.1 35.593 177 95 6 257 432 269 427 5.66e-23 101
Msa0745400 AT2G29710.1 36.095 169 93 5 229 390 238 398 7.01e-23 101
Msa0745400 AT2G16890.2 24.550 444 288 18 6 424 10 431 1.01e-22 100
Msa0745400 AT4G36770.1 24.731 465 253 16 8 415 7 431 1.68e-22 100
Msa0745400 AT2G16890.3 24.694 409 270 15 6 391 10 403 2.61e-22 99.4
Msa0745400 AT2G22590.1 33.668 199 110 8 226 410 244 434 4.59e-22 99.0
Msa0745400 AT4G27570.1 25.113 442 261 18 6 413 8 413 5.95e-22 98.6
Msa0745400 AT4G27560.1 25.000 448 254 20 6 413 8 413 6.56e-22 98.2
Msa0745400 AT1G07240.1 28.163 245 154 7 190 420 202 438 6.67e-22 98.6
Msa0745400 AT5G54060.1 25.843 445 283 18 6 421 14 440 4.71e-21 95.9
Msa0745400 AT5G54010.1 23.934 422 284 13 10 413 11 413 1.18e-20 94.7
Msa0745400 AT2G22930.1 24.242 462 290 19 10 447 11 436 1.69e-20 94.0
Msa0745400 AT5G14860.1 26.036 338 220 12 99 424 120 439 4.67e-20 93.2
Msa0745400 AT1G06000.1 24.516 465 271 18 2 432 7 425 9.22e-19 88.6
Msa0745400 AT5G37950.2 25.912 274 177 10 94 358 74 330 3.49e-17 83.2
Msa0745400 AT5G37950.1 25.993 277 179 10 94 358 74 336 8.21e-17 82.0
Msa0745400 AT5G53990.1 29.268 205 122 7 222 413 213 407 8.75e-17 82.8
Msa0745400 AT1G64920.1 22.410 473 263 20 1 422 1 420 1.98e-16 81.6
Msa0745400 AT4G09500.2 23.567 471 289 19 10 449 11 441 2.49e-16 81.3
Msa0745400 AT1G64910.1 23.131 428 274 18 10 413 11 407 3.65e-16 80.9
Msa0745400 AT1G50580.1 22.122 443 279 17 10 422 11 417 1.79e-14 75.9
Msa0745400 AT4G01070.2 24.302 358 228 12 2 332 5 346 3.80e-14 73.9
Msa0745400 AT3G29630.2 27.751 209 128 8 259 452 220 420 1.47e-13 72.8
Msa0745400 AT3G29630.1 27.751 209 128 8 259 452 246 446 1.74e-13 72.8
Msa0745400 AT4G09500.1 28.155 206 125 8 259 449 219 416 5.20e-13 70.9

Find 128 sgRNAs with CRISPR-Local

Find 229 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCAAAATGGTTTGGCATTA+TGG 0.150471 5_1:+66882038 None:intergenic
CAAGTGACTGGCTTCTTTAT+TGG 0.171232 5_1:+66879188 None:intergenic
CAAGGTAAATCATAAATATT+TGG 0.188355 5_1:-66879369 Msa0745400:three_prime_UTR
CAAGATTTACCATGGCTTAT+TGG 0.196864 5_1:-66880303 Msa0745400:CDS
AATTCACCAAAAGCCATTTA+AGG 0.201087 5_1:+66880217 None:intergenic
GGAAAGCAAGATTTAAGTTT+TGG 0.219532 5_1:-66880266 Msa0745400:CDS
TCACTAAAACTCTCAGCTTT+TGG 0.227580 5_1:-66880104 Msa0745400:CDS
GGAAAGGCTTGGTTGTTTCT+TGG 0.240759 5_1:-66879864 Msa0745400:CDS
ATAGTTTACCTTTATTAAAA+AGG 0.244399 5_1:-66878966 Msa0745400:three_prime_UTR
TTTGAAGGAATTCTTCAAAA+TGG 0.256444 5_1:+66882025 None:intergenic
GAAAGGCTTGGTTGTTTCTT+GGG 0.266617 5_1:-66879863 Msa0745400:CDS
GTATCCCTACTGCTGGGTTT+TGG 0.274904 5_1:-66881924 Msa0745400:CDS
AAGAAACCTTAAATGGCTTT+TGG 0.280756 5_1:-66880223 Msa0745400:CDS
GGTAACACAACAATTTCTTT+TGG 0.290243 5_1:+66879752 None:intergenic
AAAGATCAAGAAACCTTAAA+TGG 0.295250 5_1:-66880230 Msa0745400:CDS
TTCAAATTTGATTCACCAAT+TGG 0.306544 5_1:+66879997 None:intergenic
GCTTCTTTATTGGATCATAA+TGG 0.325994 5_1:+66879198 None:intergenic
CTACAATGAGACCTTTCATT+TGG 0.330926 5_1:-66879951 Msa0745400:CDS
GTGATGGAAGATAAGGAAAT+AGG 0.334917 5_1:-66879619 Msa0745400:CDS
TTTGGTGGTGGTTGACTTGT+TGG 0.337073 5_1:-66881980 Msa0745400:CDS
TCAGTTGTTTATGTCTCATT+TGG 0.337928 5_1:-66880033 Msa0745400:CDS
CCATGGCTTATTGGAACAAT+TGG 0.346602 5_1:-66880294 Msa0745400:CDS
GGTTGACTTGTTGGCATCTT+GGG 0.347603 5_1:-66881971 Msa0745400:CDS
ATACAAGTGGCAAGCAAGTT+TGG 0.354288 5_1:-66881946 Msa0745400:CDS
TCAAAAGAATGATGAGTTGT+AGG 0.356322 5_1:+66879293 None:intergenic
AAACTTGCTTGCCACTTGTA+TGG 0.364744 5_1:+66881948 None:intergenic
TGAATTACTAATACTAACTT+TGG 0.368535 5_1:+66880179 None:intergenic
TTTATGTCTCATTTGGAAGT+TGG 0.370337 5_1:-66880026 Msa0745400:CDS
ATTTACCTTGTTTGTTGAAA+AGG 0.371474 5_1:+66879382 None:intergenic
GATCATCAAGTGGGTTGCTT+TGG 0.372181 5_1:-66882124 Msa0745400:CDS
TGGTTGACTTGTTGGCATCT+TGG 0.374518 5_1:-66881972 Msa0745400:CDS
AGGAATTCTTCAAAATGGTT+TGG 0.383346 5_1:+66882030 None:intergenic
AAGATTTGAGTTGCTTGAAA+TGG 0.388844 5_1:-66880077 Msa0745400:CDS
TTATGTCTCATTTGGAAGTT+GGG 0.388975 5_1:-66880025 Msa0745400:CDS
GATTCAATGGCAAAGAAATC+TGG 0.391010 5_1:+66882072 None:intergenic
ATACTAACTTTGGTTTCATT+CGG 0.393586 5_1:+66880189 None:intergenic
TCTCCATACCTCAACAATAT+AGG 0.401342 5_1:+66879699 None:intergenic
TGGCGTCAAGGATTACCAAT+TGG 0.403955 5_1:-66879913 Msa0745400:CDS
AAACAACTGAGTTAGTCTTT+TGG 0.407317 5_1:+66880046 None:intergenic
TTTCATATAATGTCATTAAC+CGG 0.409159 5_1:+66879593 None:intergenic
GAAAGAATCATGGGAATAGA+TGG 0.410738 5_1:-66879574 Msa0745400:CDS
TACAATGAGACCTTTCATTT+GGG 0.415374 5_1:-66879950 Msa0745400:CDS
GACATTATATGAAAGAATCA+TGG 0.417966 5_1:-66879584 Msa0745400:CDS
CTATAGGACCTATTTGTAGT+AGG 0.418997 5_1:-66880137 Msa0745400:CDS
AAAGAGACAAGAGAATAGAT+AGG 0.420697 5_1:-66878943 Msa0745400:three_prime_UTR
ACAATGTAATTATATATTGA+TGG 0.420871 5_1:+66879435 None:intergenic
AAGTTTGGTATCCCTACTGC+TGG 0.421359 5_1:-66881931 Msa0745400:CDS
GGCGTCAAGGATTACCAATT+GGG 0.424425 5_1:-66879912 Msa0745400:CDS
CTACTACAAATAGGTCCTAT+AGG 0.427104 5_1:+66880138 None:intergenic
TATAGGCACAATTCACAAAC+TGG 0.442144 5_1:+66879716 None:intergenic
AGAGTTGGTTTGAGACTCAA+TGG 0.447428 5_1:-66879679 Msa0745400:CDS
AGTGTCAAAATGAATTGCTT+TGG 0.448689 5_1:+66879256 None:intergenic
AAATCTTGATGATGTATGTT+TGG 0.448801 5_1:-66881998 Msa0745400:CDS
TCACAAAGTGTGTTGCCTAT+AGG 0.453455 5_1:-66880153 Msa0745400:CDS
GCATTTGAGGCCATGTGTAT+TGG 0.454045 5_1:-66879337 Msa0745400:three_prime_UTR
TCATTAGGCCTACTACAAAT+AGG 0.456291 5_1:+66880129 None:intergenic
GGAAGTTGGGTCAATCCAAT+TGG 0.458893 5_1:-66880012 Msa0745400:CDS
AAGTGGGTTGCTTTGGCAGA+TGG 0.462755 5_1:-66882117 Msa0745400:CDS
AGATATGATGCAAGCATGGC+TGG 0.465673 5_1:+66881901 None:intergenic
CTATCACAGCTTCAAATCCT+TGG 0.466903 5_1:+66882208 None:intergenic
GGTCTCCATGGATGATTCAA+TGG 0.470693 5_1:+66882059 None:intergenic
ATTGTTGAGGTATGGAGAGT+TGG 0.473233 5_1:-66879694 Msa0745400:CDS
TCTTCTTATGAACATGTTGA+GGG 0.479179 5_1:+66882181 None:intergenic
ACTCAATGGGTTTGGTGAAA+AGG 0.480140 5_1:-66879665 Msa0745400:CDS
GTTCCACAAAGGATTTCAAA+AGG 0.482478 5_1:+66879527 None:intergenic
ATCTTCTTATGAACATGTTG+AGG 0.482842 5_1:+66882180 None:intergenic
CAGCCATACCTCAGATGCTT+CGG 0.484580 5_1:-66881870 Msa0745400:CDS
GAATTTAGCATTGGCTCTTG+AGG 0.486779 5_1:-66879974 Msa0745400:CDS
CTTTGCCATTGAATCATCCA+TGG 0.489962 5_1:-66882064 Msa0745400:CDS
GGTTTGAGACTCAATGGGTT+TGG 0.492442 5_1:-66879673 Msa0745400:CDS
TTGGCTTGTATGTGCATTTG+AGG 0.497543 5_1:-66879350 Msa0745400:three_prime_UTR
ACTGGACTCATCTCTGATAC+AGG 0.498998 5_1:-66881847 Msa0745400:intron
TGCAAAGGTGATGGAAGATA+AGG 0.499828 5_1:-66879626 Msa0745400:CDS
TGATGATGTATGTTTGGTGG+TGG 0.500137 5_1:-66881992 Msa0745400:CDS
GGTGAAAAGGATGTTGAAGA+AGG 0.504331 5_1:-66879652 Msa0745400:CDS
AAATCTTGTGTTGAAACTAC+AGG 0.510910 5_1:+66880318 None:intergenic
AACATGTCCTTGTGCAGGAT+AGG 0.513601 5_1:+66882266 None:intergenic
TTGTTGTGTTACCCTGTGGC+TGG 0.513828 5_1:-66879742 Msa0745400:CDS
ACAAAGGATTTCAAAAGGAA+AGG 0.519875 5_1:+66879532 None:intergenic
TTGAGGTCTTCTTGGCGTCA+AGG 0.520016 5_1:-66879925 Msa0745400:CDS
GCTTCTGTCTTTGCAAGCCA+AGG 0.521093 5_1:-66882225 Msa0745400:CDS
AACTTTGGTTTCATTCGGAA+AGG 0.524017 5_1:+66880194 None:intergenic
AAATTTGAAGAATTTAGCAT+TGG 0.531485 5_1:-66879983 Msa0745400:CDS
GGTTGCTTTGGCAGATGGAA+TGG 0.533478 5_1:-66882112 Msa0745400:CDS
AGTCCGAAGCATCTGAGGTA+TGG 0.536142 5_1:+66881867 None:intergenic
ACATGTCCTTGTGCAGGATA+GGG 0.539295 5_1:+66882267 None:intergenic
AAAATGCTTGAGACATTACT+AGG 0.540558 5_1:-66879149 Msa0745400:three_prime_UTR
ACATTATATGAAAGAATCAT+GGG 0.544809 5_1:-66879583 Msa0745400:CDS
GGACTAACATGTCCTTGTGC+AGG 0.544811 5_1:+66882261 None:intergenic
GTGCCTATATTGTTGAGGTA+TGG 0.548817 5_1:-66879702 Msa0745400:CDS
GAGTTGGTTTGAGACTCAAT+GGG 0.549961 5_1:-66879678 Msa0745400:CDS
AGTTTGGTATCCCTACTGCT+GGG 0.551378 5_1:-66881930 Msa0745400:CDS
TTTCAAGCAAGGGAAAGGCT+TGG 0.553354 5_1:-66879875 Msa0745400:CDS
TTTGGCAGATGGAATGGAAG+AGG 0.556332 5_1:-66882106 Msa0745400:CDS
GCTGGCCAAAACCCAGCAGT+AGG 0.559312 5_1:+66881919 None:intergenic
CAAAAGATATGATGCAAGCA+TGG 0.561363 5_1:+66881897 None:intergenic
ACTACTTAAGTTGTTTGACA+TGG 0.562297 5_1:+66879088 None:intergenic
ATACCTCAGATGCTTCGGAC+TGG 0.566457 5_1:-66881865 Msa0745400:CDS
GACCTCAAAACCCAAATGAA+AGG 0.569510 5_1:+66879940 None:intergenic
GTTGAAACTACAGGCAATGC+AGG 0.571217 5_1:+66880327 None:intergenic
TGCTTGAGACATTACTAGGA+TGG 0.574184 5_1:-66879145 Msa0745400:three_prime_UTR
GTTTGGCATTATGGTCTCCA+TGG 0.581445 5_1:+66882047 None:intergenic
CATGGACTCTGCTGAAGATG+TGG 0.586835 5_1:+66879106 None:intergenic
AGAAGGACTTGCAAAGGTGA+TGG 0.587499 5_1:-66879635 Msa0745400:CDS
GTAGGGCTTCCCCAACATGA+AGG 0.588624 5_1:-66880366 Msa0745400:intron
CAATCTTTATCCAATACACA+TGG 0.594894 5_1:+66879327 None:intergenic
TTGTGGTTGGAATTCTACAT+TGG 0.600715 5_1:-66879788 Msa0745400:CDS
TCTTGATGATGTATGTTTGG+TGG 0.600993 5_1:-66881995 Msa0745400:CDS
AGTCCAGTCCGAAGCATCTG+AGG 0.601208 5_1:+66881862 None:intergenic
CTGGCCAAAACCCAGCAGTA+GGG 0.604840 5_1:+66881920 None:intergenic
TTTCAACACAAGATTTACCA+TGG 0.606852 5_1:-66880311 Msa0745400:CDS
AGAATCATGGGAATAGATGG+TGG 0.607191 5_1:-66879571 Msa0745400:CDS
AAGATAAGGAAATAGGTAGC+CGG 0.608978 5_1:-66879612 Msa0745400:CDS
GGCATCTTGGGCCATACAAG+TGG 0.610717 5_1:-66881959 Msa0745400:CDS
TACAGGCAATGCAGGTACAA+AGG 0.613001 5_1:+66880335 None:intergenic
GAATTGTGCCTATATTGTTG+AGG 0.616273 5_1:-66879707 Msa0745400:CDS
TTATTGGAACAATTGGTGCA+AGG 0.617442 5_1:-66880287 Msa0745400:CDS
CCAATTGTTCCAATAAGCCA+TGG 0.621867 5_1:+66880294 None:intergenic
TTTGTTCCCTATCCTGCACA+AGG 0.621972 5_1:-66882273 Msa0745400:CDS
TAGGGCTTCCCCAACATGAA+GGG 0.624127 5_1:-66880365 Msa0745400:CDS
TTGAGCTAGCTGTTCCACAA+AGG 0.627552 5_1:+66879516 None:intergenic
TGTTGAAGAAGGACTTGCAA+AGG 0.629631 5_1:-66879641 Msa0745400:CDS
TCTTATGAACATGTTGAGGG+AGG 0.640018 5_1:+66882184 None:intergenic
GATGGTGGTAACTATAAGAG+TGG 0.645698 5_1:-66879556 Msa0745400:CDS
ATAATAATAAGATCATCAAG+TGG 0.646239 5_1:-66882134 Msa0745400:CDS
TAATAATAAGATCATCAAGT+GGG 0.648703 5_1:-66882133 Msa0745400:CDS
CAAACTGGTCTCCAGCCACA+GGG 0.668092 5_1:+66879731 None:intergenic
GAAATTGTTGTGTTACCCTG+TGG 0.746774 5_1:-66879746 Msa0745400:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAAAAAGTAAAAAG+AGG - chr5_1:66879688-66879707 Msa0745400:CDS 10.0%
!!! AATTTTATCTTCTTTTTTTA+AGG + chr5_1:66879736-66879755 None:intergenic 10.0%
!!! TTTTCAAAAGAAAAATATTT+AGG + chr5_1:66880131-66880150 None:intergenic 10.0%
!! TCACTAATAAAAAAAAAATT+AGG + chr5_1:66882156-66882175 None:intergenic 10.0%
!! GATATAAATACTTTATACTT+TGG - chr5_1:66879493-66879512 Msa0745400:CDS 15.0%
!! AAATGAAAATATGATATTAG+AGG - chr5_1:66879625-66879644 Msa0745400:CDS 15.0%
!!! TCAAATATATTTTTCCATTT+GGG + chr5_1:66880404-66880423 None:intergenic 15.0%
!!! TTCAAATATATTTTTCCATT+TGG + chr5_1:66880405-66880424 None:intergenic 15.0%
!!! TTTATTTGTTATATATCGAT+AGG - chr5_1:66880687-66880706 Msa0745400:intron 15.0%
!!! TTATTTGTTATATATCGATA+GGG - chr5_1:66880688-66880707 Msa0745400:intron 15.0%
!! AATTCTTGAACATTAATAAT+TGG + chr5_1:66880765-66880784 None:intergenic 15.0%
!!! TTAACTAAAATTTTGATGAA+TGG + chr5_1:66881718-66881737 None:intergenic 15.0%
!!! AATTTTAGTTAAATCTTCAT+TGG - chr5_1:66881726-66881745 Msa0745400:intron 15.0%
!! ACAATGTAATTATATATTGA+TGG + chr5_1:66881765-66881784 None:intergenic 15.0%
!! ATAGTTTACCTTTATTAAAA+AGG - chr5_1:66882231-66882250 Msa0745400:CDS 15.0%
!! ATAATAATAAGATCATCAAG+TGG - chr5_1:66879063-66879082 Msa0745400:three_prime_UTR 20.0%
!! TAATAATAAGATCATCAAGT+GGG - chr5_1:66879064-66879083 Msa0745400:three_prime_UTR 20.0%
!!! ATAAGGAAAGAAGTTTTAAT+TGG + chr5_1:66879392-66879411 None:intergenic 20.0%
!! TAAATTTGGCAAAACTATAT+TGG + chr5_1:66879541-66879560 None:intergenic 20.0%
!!! ATATAGTTTTGCCAAATTTA+CGG - chr5_1:66879541-66879560 Msa0745400:CDS 20.0%
!!! TTTTCTTTTGCATGATTTTT+TGG + chr5_1:66880303-66880322 None:intergenic 20.0%
!!! TGAATGTTTTTAAAGATCAT+GGG + chr5_1:66880333-66880352 None:intergenic 20.0%
!!! ATGAATGTTTTTAAAGATCA+TGG + chr5_1:66880334-66880353 None:intergenic 20.0%
!! TTGAAGTTAAAATGCATAAA+AGG + chr5_1:66880492-66880511 None:intergenic 20.0%
!! TAATATAGTTGTTAGCATAT+TGG - chr5_1:66880654-66880673 Msa0745400:intron 20.0%
!! CTTTATGATGTTATATGTAT+TGG - chr5_1:66880803-66880822 Msa0745400:intron 20.0%
!! TGAATTACTAATACTAACTT+TGG + chr5_1:66881021-66881040 None:intergenic 20.0%
!! AAATTTGAAGAATTTAGCAT+TGG - chr5_1:66881214-66881233 Msa0745400:intron 20.0%
!! TTTCATATAATGTCATTAAC+CGG + chr5_1:66881607-66881626 None:intergenic 20.0%
!! ACATTATATGAAAGAATCAT+GGG - chr5_1:66881614-66881633 Msa0745400:intron 20.0%
!! CAAGGTAAATCATAAATATT+TGG - chr5_1:66881828-66881847 Msa0745400:intron 20.0%
!! AAGCAAAAATTAAGTAACAT+CGG + chr5_1:66882198-66882217 None:intergenic 20.0%
! TTTGAAGGAATTCTTCAAAA+TGG + chr5_1:66879175-66879194 None:intergenic 25.0%
!!! CATCAAGATTTTGATTTTGA+AGG + chr5_1:66879190-66879209 None:intergenic 25.0%
!!! AAATCTTGATGATGTATGTT+TGG - chr5_1:66879199-66879218 Msa0745400:three_prime_UTR 25.0%
! TAAAACTTCTTTCCTTATTG+TGG - chr5_1:66879394-66879413 Msa0745400:three_prime_UTR 25.0%
! AAAACTTCTTTCCTTATTGT+GGG - chr5_1:66879395-66879414 Msa0745400:three_prime_UTR 25.0%
!!! TATAGTTTTGCCAAATTTAC+GGG - chr5_1:66879542-66879561 Msa0745400:CDS 25.0%
! AGGGACGAAAATTTAATATT+CGG + chr5_1:66879788-66879807 None:intergenic 25.0%
! TATATGATGTCATTACTTGT+TGG + chr5_1:66879835-66879854 None:intergenic 25.0%
! TTTCACTTATCTCATTTAGT+GGG + chr5_1:66880068-66880087 None:intergenic 25.0%
! ATTTCACTTATCTCATTTAG+TGG + chr5_1:66880069-66880088 None:intergenic 25.0%
!! TAATGAGTTGGATCAAAATA+TGG + chr5_1:66880102-66880121 None:intergenic 25.0%
! TTTAGGTATTAGTAATGAGT+TGG + chr5_1:66880114-66880133 None:intergenic 25.0%
!!! GAATGTTTTTAAAGATCATG+GGG + chr5_1:66880332-66880351 None:intergenic 25.0%
!! GATGTTATATGTATTGGTAT+TGG - chr5_1:66880809-66880828 Msa0745400:intron 25.0%
!!! TTATATGTATTGGTATTGGT+AGG - chr5_1:66880813-66880832 Msa0745400:intron 25.0%
!!! TATATGTATTGGTATTGGTA+GGG - chr5_1:66880814-66880833 Msa0745400:intron 25.0%
! AAAGATCAAGAAACCTTAAA+TGG - chr5_1:66880967-66880986 Msa0745400:intron 25.0%
!! ATACTAACTTTGGTTTCATT+CGG + chr5_1:66881011-66881030 None:intergenic 25.0%
!!! AGAGTTTTAGTGAAATCATT+AGG + chr5_1:66881086-66881105 None:intergenic 25.0%
! TTCAAATTTGATTCACCAAT+TGG + chr5_1:66881203-66881222 None:intergenic 25.0%
! GACATTATATGAAAGAATCA+TGG - chr5_1:66881613-66881632 Msa0745400:intron 25.0%
!! ATTTACCTTGTTTGTTGAAA+AGG + chr5_1:66881818-66881837 None:intergenic 25.0%
!! CAAACAACTTAAGTAGTTTT+TGG - chr5_1:66882115-66882134 Msa0745400:CDS 25.0%
!!! GTTTTTGGACTTATATTTTG+AGG - chr5_1:66882130-66882149 Msa0745400:CDS 25.0%
!! GTCTCTTTCCTTTTTAATAA+AGG + chr5_1:66882242-66882261 None:intergenic 25.0%
TAGGGAACAAAAACGATTAT+TGG + chr5_1:66878915-66878934 None:intergenic 30.0%
TCTTCTTATGAACATGTTGA+GGG + chr5_1:66879019-66879038 None:intergenic 30.0%
ATCTTCTTATGAACATGTTG+AGG + chr5_1:66879020-66879039 None:intergenic 30.0%
! TTCAAAATGGTTTGGCATTA+TGG + chr5_1:66879162-66879181 None:intergenic 30.0%
AGGAATTCTTCAAAATGGTT+TGG + chr5_1:66879170-66879189 None:intergenic 30.0%
AAACTTCTTTCCTTATTGTG+GGG - chr5_1:66879396-66879415 Msa0745400:three_prime_UTR 30.0%
! CGATGAAATTCTTTGAGTTA+TGG - chr5_1:66879446-66879465 Msa0745400:three_prime_UTR 30.0%
! TTCGGTAGTCTTAATCATTT+GGG + chr5_1:66879770-66879789 None:intergenic 30.0%
! ATTCGGTAGTCTTAATCATT+TGG + chr5_1:66879771-66879790 None:intergenic 30.0%
TTATCTCATTTAGTGGGATA+AGG + chr5_1:66880062-66880081 None:intergenic 30.0%
TCTTCAACGTGAAAAATTAG+TGG - chr5_1:66880277-66880296 Msa0745400:CDS 30.0%
TTATAAAGTGCATATGCCAA+GGG + chr5_1:66880600-66880619 None:intergenic 30.0%
AAATCTTGTGTTGAAACTAC+AGG + chr5_1:66880882-66880901 None:intergenic 30.0%
TTTCAACACAAGATTTACCA+TGG - chr5_1:66880886-66880905 Msa0745400:intron 30.0%
!! GGAAAGCAAGATTTAAGTTT+TGG - chr5_1:66880931-66880950 Msa0745400:intron 30.0%
!!! TAAGTTTTGGATGAGAACAT+TGG - chr5_1:66880944-66880963 Msa0745400:intron 30.0%
! AAGAAACCTTAAATGGCTTT+TGG - chr5_1:66880974-66880993 Msa0745400:intron 30.0%
AATTCACCAAAAGCCATTTA+AGG + chr5_1:66880983-66881002 None:intergenic 30.0%
!! AAGATTTGAGTTGCTTGAAA+TGG - chr5_1:66881120-66881139 Msa0745400:intron 30.0%
!!! AAACAACTGAGTTAGTCTTT+TGG + chr5_1:66881154-66881173 None:intergenic 30.0%
TCAGTTGTTTATGTCTCATT+TGG - chr5_1:66881164-66881183 Msa0745400:intron 30.0%
TTTATGTCTCATTTGGAAGT+TGG - chr5_1:66881171-66881190 Msa0745400:intron 30.0%
TTATGTCTCATTTGGAAGTT+GGG - chr5_1:66881172-66881191 Msa0745400:intron 30.0%
TACAATGAGACCTTTCATTT+GGG - chr5_1:66881247-66881266 Msa0745400:intron 30.0%
! TTGCAAAATCTCTTTTTGTG+GGG + chr5_1:66881360-66881379 None:intergenic 30.0%
! GTTGCAAAATCTCTTTTTGT+GGG + chr5_1:66881361-66881380 None:intergenic 30.0%
! TGTTGCAAAATCTCTTTTTG+TGG + chr5_1:66881362-66881381 None:intergenic 30.0%
! ATTTTGCAACACAATTCTGT+AGG - chr5_1:66881371-66881390 Msa0745400:intron 30.0%
! GGTAACACAACAATTTCTTT+TGG + chr5_1:66881448-66881467 None:intergenic 30.0%
ACAAAGGATTTCAAAAGGAA+AGG + chr5_1:66881668-66881687 None:intergenic 30.0%
!!! TTTCCTTTTGAAATCCTTTG+TGG - chr5_1:66881667-66881686 Msa0745400:intron 30.0%
CAATCTTTATCCAATACACA+TGG + chr5_1:66881873-66881892 None:intergenic 30.0%
TCAAAAGAATGATGAGTTGT+AGG + chr5_1:66881907-66881926 None:intergenic 30.0%
AGTGTCAAAATGAATTGCTT+TGG + chr5_1:66881944-66881963 None:intergenic 30.0%
!! CAATTCATTTTGACACTCAA+TGG - chr5_1:66881947-66881966 Msa0745400:CDS 30.0%
GCTTCTTTATTGGATCATAA+TGG + chr5_1:66882002-66882021 None:intergenic 30.0%
AAAATGCTTGAGACATTACT+AGG - chr5_1:66882048-66882067 Msa0745400:CDS 30.0%
! ACTACTTAAGTTGTTTGACA+TGG + chr5_1:66882112-66882131 None:intergenic 30.0%
AAAGAGACAAGAGAATAGAT+AGG - chr5_1:66882254-66882273 Msa0745400:CDS 30.0%
! ACAGAAGCTAGATTTTGCAT+GGG + chr5_1:66878960-66878979 None:intergenic 35.0%
GATTCAATGGCAAAGAAATC+TGG + chr5_1:66879128-66879147 None:intergenic 35.0%
!! TCTTGATGATGTATGTTTGG+TGG - chr5_1:66879202-66879221 Msa0745400:three_prime_UTR 35.0%
CAAAAGATATGATGCAAGCA+TGG + chr5_1:66879303-66879322 None:intergenic 35.0%
TGAGTTATGGTGAATCAATC+TGG - chr5_1:66879459-66879478 Msa0745400:three_prime_UTR 35.0%
GAGTTATGGTGAATCAATCT+GGG - chr5_1:66879460-66879479 Msa0745400:three_prime_UTR 35.0%
TGGAGAGCTCAACAAAATTA+CGG - chr5_1:66879513-66879532 Msa0745400:CDS 35.0%
TTAGAAAGTTTGCATTCCTG+TGG - chr5_1:66880550-66880569 Msa0745400:intron 35.0%
GTTATAAAGTGCATATGCCA+AGG + chr5_1:66880601-66880620 None:intergenic 35.0%
! GTAATTTTCCCTTCATGTTG+GGG + chr5_1:66880843-66880862 None:intergenic 35.0%
! GGTAATTTTCCCTTCATGTT+GGG + chr5_1:66880844-66880863 None:intergenic 35.0%
! AGGTAATTTTCCCTTCATGT+TGG + chr5_1:66880845-66880864 None:intergenic 35.0%
CAAGATTTACCATGGCTTAT+TGG - chr5_1:66880894-66880913 Msa0745400:intron 35.0%
TTATTGGAACAATTGGTGCA+AGG - chr5_1:66880910-66880929 Msa0745400:intron 35.0%
! AACTTTGGTTTCATTCGGAA+AGG + chr5_1:66881006-66881025 None:intergenic 35.0%
CTACTACAAATAGGTCCTAT+AGG + chr5_1:66881062-66881081 None:intergenic 35.0%
CTATAGGACCTATTTGTAGT+AGG - chr5_1:66881060-66881079 Msa0745400:intron 35.0%
TCATTAGGCCTACTACAAAT+AGG + chr5_1:66881071-66881090 None:intergenic 35.0%
! TCACTAAAACTCTCAGCTTT+TGG - chr5_1:66881093-66881112 Msa0745400:intron 35.0%
! CACTAAAACTCTCAGCTTTT+GGG - chr5_1:66881094-66881113 Msa0745400:intron 35.0%
CTACAATGAGACCTTTCATT+TGG - chr5_1:66881246-66881265 Msa0745400:intron 35.0%
! AGGATTACCAATTGGGTTTT+TGG - chr5_1:66881292-66881311 Msa0745400:intron 35.0%
!! GGTTGTTTTATCACTCATTG+TGG - chr5_1:66881392-66881411 Msa0745400:intron 35.0%
! GTTTTATCACTCATTGTGGT+TGG - chr5_1:66881396-66881415 Msa0745400:intron 35.0%
TTGTGGTTGGAATTCTACAT+TGG - chr5_1:66881409-66881428 Msa0745400:intron 35.0%
TATAGGCACAATTCACAAAC+TGG + chr5_1:66881484-66881503 None:intergenic 35.0%
GAATTGTGCCTATATTGTTG+AGG - chr5_1:66881490-66881509 Msa0745400:intron 35.0%
TCTCCATACCTCAACAATAT+AGG + chr5_1:66881501-66881520 None:intergenic 35.0%
! GTGATGGAAGATAAGGAAAT+AGG - chr5_1:66881578-66881597 Msa0745400:intron 35.0%
AAGATAAGGAAATAGGTAGC+CGG - chr5_1:66881585-66881604 Msa0745400:intron 35.0%
GAAAGAATCATGGGAATAGA+TGG - chr5_1:66881623-66881642 Msa0745400:intron 35.0%
GTTCCACAAAGGATTTCAAA+AGG + chr5_1:66881673-66881692 None:intergenic 35.0%
! AGAGTCCTTTTCAACAAACA+AGG - chr5_1:66881810-66881829 Msa0745400:intron 35.0%
!! GTTTTTCAATCACAAGTGAC+TGG + chr5_1:66882024-66882043 None:intergenic 35.0%
! GACAGAAGCTAGATTTTGCA+TGG + chr5_1:66878961-66878980 None:intergenic 40.0%
CTATCACAGCTTCAAATCCT+TGG + chr5_1:66878992-66879011 None:intergenic 40.0%
TCTTATGAACATGTTGAGGG+AGG + chr5_1:66879016-66879035 None:intergenic 40.0%
CTTTGCCATTGAATCATCCA+TGG - chr5_1:66879133-66879152 Msa0745400:three_prime_UTR 40.0%
! TGATGATGTATGTTTGGTGG+TGG - chr5_1:66879205-66879224 Msa0745400:three_prime_UTR 40.0%
! AAACTTGCTTGCCACTTGTA+TGG + chr5_1:66879252-66879271 None:intergenic 40.0%
ATACAAGTGGCAAGCAAGTT+TGG - chr5_1:66879251-66879270 Msa0745400:three_prime_UTR 40.0%
GAAAATGAGTCCCCACAATA+AGG + chr5_1:66879409-66879428 None:intergenic 40.0%
TAAGCGTATGCCCGTAAATT+TGG + chr5_1:66879555-66879574 None:intergenic 40.0%
GAGGTTTAGGTGATTTCAAC+AGG + chr5_1:66880249-66880268 None:intergenic 40.0%
GAAGACATGTTGAGAGGTTT+AGG + chr5_1:66880262-66880281 None:intergenic 40.0%
GGACAATTCGAGGAACTAAA+TGG + chr5_1:66880383-66880402 None:intergenic 40.0%
! TTTCCATTTGGGACAATTCG+AGG + chr5_1:66880393-66880412 None:intergenic 40.0%
!!! TATAGTTTTGGTTGCTCCAC+AGG + chr5_1:66880569-66880588 None:intergenic 40.0%
! AGGGCTATGCACTATAGTTT+TGG + chr5_1:66880581-66880600 None:intergenic 40.0%
AAACTATAGTGCATAGCCCT+TGG - chr5_1:66880581-66880600 Msa0745400:intron 40.0%
! CATGCATCTTTGACTTTCTG+TGG + chr5_1:66880719-66880738 None:intergenic 40.0%
CCAATTGTTCCAATAAGCCA+TGG + chr5_1:66880906-66880925 None:intergenic 40.0%
CCATGGCTTATTGGAACAAT+TGG - chr5_1:66880903-66880922 Msa0745400:intron 40.0%
TCACAAAGTGTGTTGCCTAT+AGG - chr5_1:66881044-66881063 Msa0745400:intron 40.0%
!! GAATTTAGCATTGGCTCTTG+AGG - chr5_1:66881223-66881242 Msa0745400:intron 40.0%
!! GACCTTTCATTTGGGTTTTG+AGG - chr5_1:66881255-66881274 Msa0745400:intron 40.0%
GACCTCAAAACCCAAATGAA+AGG + chr5_1:66881260-66881279 None:intergenic 40.0%
!!! TTTGGGTTTTGAGGTCTTCT+TGG - chr5_1:66881264-66881283 Msa0745400:intron 40.0%
!! TACCAATTGGGTTTTTGGAG+AGG - chr5_1:66881297-66881316 Msa0745400:intron 40.0%
!! ACCAATTGGGTTTTTGGAGA+GGG - chr5_1:66881298-66881317 Msa0745400:intron 40.0%
!! GAAAGGCTTGGTTGTTTCTT+GGG - chr5_1:66881334-66881353 Msa0745400:intron 40.0%
GAAATTGTTGTGTTACCCTG+TGG - chr5_1:66881451-66881470 Msa0745400:intron 40.0%
GTGCCTATATTGTTGAGGTA+TGG - chr5_1:66881495-66881514 Msa0745400:intron 40.0%
ATTGTTGAGGTATGGAGAGT+TGG - chr5_1:66881503-66881522 Msa0745400:intron 40.0%
!! AGAGTTGGTTTGAGACTCAA+TGG - chr5_1:66881518-66881537 Msa0745400:intron 40.0%
!! GAGTTGGTTTGAGACTCAAT+GGG - chr5_1:66881519-66881538 Msa0745400:intron 40.0%
!! ACTCAATGGGTTTGGTGAAA+AGG - chr5_1:66881532-66881551 Msa0745400:intron 40.0%
GGTGAAAAGGATGTTGAAGA+AGG - chr5_1:66881545-66881564 Msa0745400:intron 40.0%
TGTTGAAGAAGGACTTGCAA+AGG - chr5_1:66881556-66881575 Msa0745400:intron 40.0%
!! TGCAAAGGTGATGGAAGATA+AGG - chr5_1:66881571-66881590 Msa0745400:intron 40.0%
AGAATCATGGGAATAGATGG+TGG - chr5_1:66881626-66881645 Msa0745400:intron 40.0%
! GATGGTGGTAACTATAAGAG+TGG - chr5_1:66881641-66881660 Msa0745400:intron 40.0%
!! TTGGCTTGTATGTGCATTTG+AGG - chr5_1:66881847-66881866 Msa0745400:intron 40.0%
!! CAAGTGACTGGCTTCTTTAT+TGG + chr5_1:66882012-66882031 None:intergenic 40.0%
TGCTTGAGACATTACTAGGA+TGG - chr5_1:66882052-66882071 Msa0745400:CDS 40.0%
TTTGTTCCCTATCCTGCACA+AGG - chr5_1:66878924-66878943 Msa0745400:three_prime_UTR 45.0%
ACATGTCCTTGTGCAGGATA+GGG + chr5_1:66878933-66878952 None:intergenic 45.0%
AACATGTCCTTGTGCAGGAT+AGG + chr5_1:66878934-66878953 None:intergenic 45.0%
!! GATCATCAAGTGGGTTGCTT+TGG - chr5_1:66879073-66879092 Msa0745400:three_prime_UTR 45.0%
TTTGGCAGATGGAATGGAAG+AGG - chr5_1:66879091-66879110 Msa0745400:three_prime_UTR 45.0%
GGTCTCCATGGATGATTCAA+TGG + chr5_1:66879141-66879160 None:intergenic 45.0%
GTTTGGCATTATGGTCTCCA+TGG + chr5_1:66879153-66879172 None:intergenic 45.0%
!! TTTGGTGGTGGTTGACTTGT+TGG - chr5_1:66879217-66879236 Msa0745400:three_prime_UTR 45.0%
!! TGGTTGACTTGTTGGCATCT+TGG - chr5_1:66879225-66879244 Msa0745400:three_prime_UTR 45.0%
!! GGTTGACTTGTTGGCATCTT+GGG - chr5_1:66879226-66879245 Msa0745400:three_prime_UTR 45.0%
AAGTTTGGTATCCCTACTGC+TGG - chr5_1:66879266-66879285 Msa0745400:three_prime_UTR 45.0%
AGTTTGGTATCCCTACTGCT+GGG - chr5_1:66879267-66879286 Msa0745400:three_prime_UTR 45.0%
AGATATGATGCAAGCATGGC+TGG + chr5_1:66879299-66879318 None:intergenic 45.0%
ACTGGACTCATCTCTGATAC+AGG - chr5_1:66879350-66879369 Msa0745400:three_prime_UTR 45.0%
! TTGTTGGTGTTTACCTCCCA+TGG + chr5_1:66879819-66879838 None:intergenic 45.0%
CACGTTGAAGACATGTTGAG+AGG + chr5_1:66880268-66880287 None:intergenic 45.0%
GTTCCTCGAATTGTCCCAAA+TGG - chr5_1:66880387-66880406 Msa0745400:intron 45.0%
TACAGGCAATGCAGGTACAA+AGG + chr5_1:66880865-66880884 None:intergenic 45.0%
GTTGAAACTACAGGCAATGC+AGG + chr5_1:66880873-66880892 None:intergenic 45.0%
GGAAGTTGGGTCAATCCAAT+TGG - chr5_1:66881185-66881204 Msa0745400:intron 45.0%
TGGCGTCAAGGATTACCAAT+TGG - chr5_1:66881284-66881303 Msa0745400:intron 45.0%
GGCGTCAAGGATTACCAATT+GGG - chr5_1:66881285-66881304 Msa0745400:intron 45.0%
ACCCTCTCCAAAAACCCAAT+TGG + chr5_1:66881302-66881321 None:intergenic 45.0%
!! TTGGAGAGGGTTTTCAAGCA+AGG - chr5_1:66881311-66881330 Msa0745400:intron 45.0%
!! TGGAGAGGGTTTTCAAGCAA+GGG - chr5_1:66881312-66881331 Msa0745400:intron 45.0%
!! AGGGTTTTCAAGCAAGGGAA+AGG - chr5_1:66881317-66881336 Msa0745400:intron 45.0%
TTTCAAGCAAGGGAAAGGCT+TGG - chr5_1:66881322-66881341 Msa0745400:intron 45.0%
!! GGAAAGGCTTGGTTGTTTCT+TGG - chr5_1:66881333-66881352 Msa0745400:intron 45.0%
! GGTTTGAGACTCAATGGGTT+TGG - chr5_1:66881524-66881543 Msa0745400:intron 45.0%
AGAAGGACTTGCAAAGGTGA+TGG - chr5_1:66881562-66881581 Msa0745400:intron 45.0%
TTGAGCTAGCTGTTCCACAA+AGG + chr5_1:66881684-66881703 None:intergenic 45.0%
! GCATTTGAGGCCATGTGTAT+TGG - chr5_1:66881860-66881879 Msa0745400:CDS 45.0%
!!! TATAACAAATAAAATTTTAA+AGG + chr5_1:66880680-66880699 None:intergenic 5.0%
GGACTAACATGTCCTTGTGC+AGG + chr5_1:66878939-66878958 None:intergenic 50.0%
GCTTCTGTCTTTGCAAGCCA+AGG - chr5_1:66878972-66878991 Msa0745400:three_prime_UTR 50.0%
!! AAGTGGGTTGCTTTGGCAGA+TGG - chr5_1:66879080-66879099 Msa0745400:three_prime_UTR 50.0%
! GGTTGCTTTGGCAGATGGAA+TGG - chr5_1:66879085-66879104 Msa0745400:three_prime_UTR 50.0%
! GTATCCCTACTGCTGGGTTT+TGG - chr5_1:66879273-66879292 Msa0745400:three_prime_UTR 50.0%
CAGCCATACCTCAGATGCTT+CGG - chr5_1:66879327-66879346 Msa0745400:three_prime_UTR 50.0%
! AGTCCGAAGCATCTGAGGTA+TGG + chr5_1:66879333-66879352 None:intergenic 50.0%
ATACCTCAGATGCTTCGGAC+TGG - chr5_1:66879332-66879351 Msa0745400:three_prime_UTR 50.0%
TTCGTCCCTTATCCTCACCA+TGG - chr5_1:66879799-66879818 Msa0745400:CDS 50.0%
TCGTCCCTTATCCTCACCAT+GGG - chr5_1:66879800-66879819 Msa0745400:CDS 50.0%
ACCTCCCATGGTGAGGATAA+GGG + chr5_1:66879807-66879826 None:intergenic 50.0%
TACCTCCCATGGTGAGGATA+AGG + chr5_1:66879808-66879827 None:intergenic 50.0%
TAGGGCTTCCCCAACATGAA+GGG - chr5_1:66880832-66880851 Msa0745400:intron 50.0%
TTGAGGTCTTCTTGGCGTCA+AGG - chr5_1:66881272-66881291 Msa0745400:intron 50.0%
TTGTTGTGTTACCCTGTGGC+TGG - chr5_1:66881455-66881474 Msa0745400:intron 50.0%
CATGGACTCTGCTGAAGATG+TGG + chr5_1:66882094-66882113 None:intergenic 50.0%
GGCATCTTGGGCCATACAAG+TGG - chr5_1:66879238-66879257 Msa0745400:three_prime_UTR 55.0%
CTGGCCAAAACCCAGCAGTA+GGG + chr5_1:66879280-66879299 None:intergenic 55.0%
! AGTCCAGTCCGAAGCATCTG+AGG + chr5_1:66879338-66879357 None:intergenic 55.0%
TCCCTTATCCTCACCATGGG+AGG - chr5_1:66879803-66879822 Msa0745400:CDS 55.0%
GGTGTTTACCTCCCATGGTG+AGG + chr5_1:66879814-66879833 None:intergenic 55.0%
GTAGGGCTTCCCCAACATGA+AGG - chr5_1:66880831-66880850 Msa0745400:intron 55.0%
! CAAACTGGTCTCCAGCCACA+GGG + chr5_1:66881469-66881488 None:intergenic 55.0%
! ACAAACTGGTCTCCAGCCAC+AGG + chr5_1:66881470-66881489 None:intergenic 55.0%
GCTGGCCAAAACCCAGCAGT+AGG + chr5_1:66879281-66879300 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 66878903 66882316 66878903 ID=Msa0745400;Name=Msa0745400
chr5_1 mRNA 66878903 66882316 66878903 ID=Msa0745400-mRNA-1;Parent=Msa0745400;Name=Msa0745400-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|1|0.5|1|1|1|2|583|455
chr5_1 exon 66878903 66880384 66878903 ID=Msa0745400-mRNA-1:exon:19837;Parent=Msa0745400-mRNA-1
chr5_1 exon 66881848 66882316 66881848 ID=Msa0745400-mRNA-1:exon:19836;Parent=Msa0745400-mRNA-1
chr5_1 CDS 66881848 66882316 66881848 ID=Msa0745400-mRNA-1:cds;Parent=Msa0745400-mRNA-1
chr5_1 CDS 66879486 66880384 66879486 ID=Msa0745400-mRNA-1:cds;Parent=Msa0745400-mRNA-1
chr5_1 three_prime_UTR 66878903 66879485 66878903 ID=Msa0745400-mRNA-1:three_prime_utr;Parent=Msa0745400-mRNA-1
Gene Sequence

>Msa0745400

ATGAAGAAGCCAATAATCGTTTTTGTTCCCTATCCTGCACAAGGACATGTTAGTCCCATGCAAAATCTAGCTTCTGTCTTTGCAAGCCAAGGATTTGAAGCTGTGATAGTCCTCCCTCAACATGTTCATAAGAAGATTAATAATAATAATAATGATGATGATAATAATAAGATCATCAAGTGGGTTGCTTTGGCAGATGGAATGGAAGAGGATAGTACAACACCAGATTTCTTTGCCATTGAATCATCCATGGAGACCATAATGCCAAACCATTTTGAAGAATTCCTTCAAAATCAAAATCTTGATGATGTATGTTTGGTGGTGGTTGACTTGTTGGCATCTTGGGCCATACAAGTGGCAAGCAAGTTTGGTATCCCTACTGCTGGGTTTTGGCCAGCCATGCTTGCATCATATCTTTTGATTGCAGCCATACCTCAGATGCTTCGGACTGGACTCATCTCTGATACAGGGCTTCCCCAACATGAAGGGAAAATTACCTTTGTACCTGCATTGCCTGTAGTTTCAACACAAGATTTACCATGGCTTATTGGAACAATTGGTGCAAGGAAAGCAAGATTTAAGTTTTGGATGAGAACATTGGAAAGATCAAGAAACCTTAAATGGCTTTTGGTGAATTCCTTTCCGAATGAAACCAAAGTTAGTATTAGTAATTCACATTCACAAAGTGTGTTGCCTATAGGACCTATTTGTAGTAGGCCTAATGATTTCACTAAAACTCTCAGCTTTTGGGAACAAGATTTGAGTTGCTTGAAATGGCTAGCAAACCAAAAGACTAACTCAGTTGTTTATGTCTCATTTGGAAGTTGGGTCAATCCAATTGGTGAATCAAATTTGAAGAATTTAGCATTGGCTCTTGAGGCTACAATGAGACCTTTCATTTGGGTTTTGAGGTCTTCTTGGCGTCAAGGATTACCAATTGGGTTTTTGGAGAGGGTTTTCAAGCAAGGGAAAGGCTTGGTTGTTTCTTGGGCCCCACAAAAAGAGATTTTGCAACACAATTCTGTAGGTTGTTTTATCACTCATTGTGGTTGGAATTCTACATTGGAAGCATTACAATTCCAAAAGAAATTGTTGTGTTACCCTGTGGCTGGAGACCAGTTTGTGAATTGTGCCTATATTGTTGAGGTATGGAGAGTTGGTTTGAGACTCAATGGGTTTGGTGAAAAGGATGTTGAAGAAGGACTTGCAAAGGTGATGGAAGATAAGGAAATAGGTAGCCGGTTAATGACATTATATGAAAGAATCATGGGAATAGATGGTGGTAACTATAAGAGTGGTCCTTTCCTTTTGAAATCCTTTGTGGAACAGCTAGCTCAAGAAAACATCTACCATTCATCAAAATTTTAG
Protein sequence

>Msa0745400

MKKPIIVFVPYPAQGHVSPMQNLASVFASQGFEAVIVLPQHVHKKINNNNNDDDNNKIIKWVALADGMEEDSTTPDFFAIESSMETIMPNHFEEFLQNQNLDDVCLVVVDLLASWAIQVASKFGIPTAGFWPAMLASYLLIAAIPQMLRTGLISDTGLPQHEGKITFVPALPVVSTQDLPWLIGTIGARKARFKFWMRTLERSRNLKWLLVNSFPNETKVSISNSHSQSVLPIGPICSRPNDFTKTLSFWEQDLSCLKWLANQKTNSVVYVSFGSWVNPIGESNLKNLALALEATMRPFIWVLRSSWRQGLPIGFLERVFKQGKGLVVSWAPQKEILQHNSVGCFITHCGWNSTLEALQFQKKLLCYPVAGDQFVNCAYIVEVWRVGLRLNGFGEKDVEEGLAKVMEDKEIGSRLMTLYERIMGIDGGNYKSGPFLLKSFVEQLAQENIYHSSKF*