AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0746190


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0746190 MtrunA17_Chr7g0275031 57.895 494 195 6 1 487 1 488 0.0 542
Msa0746190 MtrunA17_Chr7g0273381 58.367 490 185 8 1 488 1 473 0.0 536
Msa0746190 MtrunA17_Chr1g0210341 54.790 334 144 5 158 488 9 338 8.82e-107 321
Msa0746190 MtrunA17_Chr7g0274761 58.400 250 95 3 1 246 1 245 4.52e-87 268
Msa0746190 MtrunA17_Chr5g0442431 60.248 161 64 0 96 256 6 166 4.09e-61 197
Msa0746190 MtrunA17_Chr6g0453901 32.792 308 170 8 2 305 5 279 1.14e-35 138
Msa0746190 MtrunA17_Chr6g0453821 32.792 308 170 8 2 305 5 279 3.17e-35 138
Msa0746190 MtrunA17_Chr7g0266931 31.126 302 183 7 6 304 35 314 2.05e-30 120
Msa0746190 MtrunA17_Chr7g0254311 30.667 300 175 9 7 304 10 278 1.32e-27 114
Msa0746190 MtrunA17_Chr7g0260121 33.871 248 141 7 7 254 12 236 1.16e-26 113
Msa0746190 MtrunA17_Chr7g0254851 28.205 390 226 12 6 369 9 370 1.59e-26 113
Msa0746190 MtrunA17_Chr7g0254851 26.641 259 169 9 196 443 292 540 8.74e-11 64.3
Msa0746190 MtrunA17_Chr7g0254771 29.766 299 181 7 6 304 9 278 6.18e-24 105
Msa0746190 MtrunA17_Chr7g0254771 27.509 269 163 8 207 467 305 549 1.37e-13 73.2
Msa0746190 MtrunA17_Chr2g0312391 31.873 251 154 6 2 252 13 246 1.05e-23 101
Msa0746190 MtrunA17_Chr7g0274771 70.690 58 17 0 387 444 1 58 7.07e-23 92.0
Msa0746190 MtrunA17_Chr3g0079861 29.960 247 150 5 8 254 16 239 2.54e-21 97.4
Msa0746190 MtrunA17_Chr7g0258241 29.078 282 162 8 91 347 24 292 7.20e-20 91.3
Msa0746190 MtrunA17_Chr7g0260261 29.600 250 149 6 8 254 16 241 9.57e-20 92.4
Msa0746190 MtrunA17_Chr7g0260261 26.562 320 198 12 193 487 296 603 5.94e-12 68.2
Msa0746190 MtrunA17_Chr7g0256081 31.518 257 137 12 6 254 45 270 3.12e-18 87.8
Msa0746190 MtrunA17_Chr7g0256081 26.573 286 175 9 193 467 324 585 5.77e-12 68.2
Msa0746190 MtrunA17_Chr7g0260111 34.359 195 109 6 7 200 11 187 4.19e-17 82.4
Msa0746190 MtrunA17_Chr7g0267251 26.493 268 165 9 209 468 37 280 6.22e-17 81.3
Msa0746190 MtrunA17_Chr6g0478831 29.508 183 110 4 6 188 9 172 9.80e-16 75.5
Msa0746190 MtrunA17_Chr2g0293781 29.502 261 112 9 88 284 20 272 2.08e-14 74.3
Msa0746190 MtrunA17_Chr8g0362281 25.616 406 260 16 90 478 89 469 1.66e-12 69.3
Msa0746190 MtrunA17_Chr2g0312381 27.419 186 122 6 289 466 1 181 8.31e-12 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 99 sgRNAs with CRISPR-Local

Find 398 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCCTTCAACTACGCAGTTTA+TGG 0.130996 5_1:-68278577 None:intergenic
GAGAAAGATGGGAGTGAATT+TGG 0.132619 5_1:-68278350 None:intergenic
AGTATCAATCTTCTCTTTCT+AGG 0.199865 5_1:+68279615 Msa0746190:CDS
TTGTGTCATCTCAAGATTAT+AGG 0.236337 5_1:+68279933 Msa0746190:CDS
GAACCTTACTCGAGATAAAA+TGG 0.244158 5_1:+68279179 Msa0746190:exon
ACTAAAAGTTTCTGCAAAAT+AGG 0.249125 5_1:-68280428 None:intergenic
TGGAATAAAGTCGCAATTAA+AGG 0.262708 5_1:-68279760 None:intergenic
AAACCAATGAACGTAGTTTA+AGG 0.265682 5_1:-68280016 None:intergenic
AAAACTTGAGCTAATAGTTC+TGG 0.267352 5_1:+68284614 Msa0746190:CDS
AGAAAGATGGGAGTGAATTT+GGG 0.326547 5_1:-68278349 None:intergenic
TTTCATGGTGAACTTTCATT+TGG 0.327756 5_1:+68279530 Msa0746190:CDS
GATCCTTCTTCTTCAGTTCA+TGG 0.333547 5_1:+68278437 Msa0746190:five_prime_UTR
TGGTTTACCGTGGATATATA+TGG 0.340282 5_1:+68280033 Msa0746190:CDS
AAGAGAGTCATCAATTTAGA+TGG 0.344617 5_1:+68279438 Msa0746190:CDS
TTGATGACTCTCTTTATAGT+AGG 0.344969 5_1:-68279429 None:intergenic
ACCTCATCCTTTCCTTGAGC+TGG 0.349036 5_1:+68280345 Msa0746190:CDS
TTTACAAGGAACCGTGGATA+TGG 0.362010 5_1:-68284468 None:intergenic
TAATAGTTCTGGGTCCCTAT+TGG 0.365075 5_1:+68284625 Msa0746190:CDS
AAGATCTTCATTGAATGAAA+TGG 0.369470 5_1:-68280111 None:intergenic
TGAGTCATTTCCTTCCCAAT+AGG 0.369669 5_1:-68284640 None:intergenic
TTGCCTTAAACTACGTTCAT+TGG 0.380340 5_1:+68280013 Msa0746190:CDS
CAAGATTATAGGGTGCTATA+TGG 0.383951 5_1:+68279944 Msa0746190:CDS
ATCGCTTGAAGAAGTAGAAT+TGG 0.386166 5_1:+68279803 Msa0746190:CDS
AAGGATCGTCGTAGAGAGAT+AGG 0.387864 5_1:-68278421 None:intergenic
GAGTCATTTCCTTCCCAATA+GGG 0.390477 5_1:-68284639 None:intergenic
AATAGTTCTGGGTCCCTATT+GGG 0.394643 5_1:+68284626 Msa0746190:CDS
TGGGAGGTTGCGTTGGCAAT+TGG 0.402333 5_1:+68284550 Msa0746190:CDS
CACAATCGTCGATTCTTTCA+TGG 0.405260 5_1:+68279515 Msa0746190:CDS
TGTGTCATCTCAAGATTATA+GGG 0.410391 5_1:+68279934 Msa0746190:CDS
CTTCATCTCTAAACCATCTT+CGG 0.410662 5_1:+68279712 Msa0746190:CDS
TGAGAAAGTTTGCTGGTGTT+GGG 0.414595 5_1:-68278394 None:intergenic
GGTGCAAGCTTTCTGCTCTA+AGG 0.421048 5_1:+68279301 Msa0746190:CDS
TCCATAAACTGCGTAGTTGA+AGG 0.423422 5_1:+68278576 Msa0746190:five_prime_UTR
TGGGAAGGAAATGACTCATT+GGG 0.438232 5_1:+68284645 Msa0746190:CDS
TTGGGAAGGAAATGACTCAT+TGG 0.442797 5_1:+68284644 Msa0746190:CDS
GTGAGAAAGTTTGCTGGTGT+TGG 0.448865 5_1:-68278395 None:intergenic
GGAATAAAGTCGCAATTAAA+GGG 0.449804 5_1:-68279759 None:intergenic
AAACTTGAGCTAATAGTTCT+GGG 0.458817 5_1:+68284615 Msa0746190:CDS
TTTCATATCTTCAATGTGCT+TGG 0.462836 5_1:+68279336 Msa0746190:CDS
TGAGTTCAAATCATCAAAGT+TGG 0.467816 5_1:+68279893 Msa0746190:CDS
AGGAAAGTGAGAAAGTTTGC+TGG 0.474317 5_1:-68278401 None:intergenic
AAGCCATCTTAGTATCTAGA+AGG 0.479268 5_1:+68279277 Msa0746190:CDS
AACTGTCTAAGATGTTTGAA+TGG 0.490498 5_1:-68280320 None:intergenic
TGGGAAATCTTAAATGATGT+AGG 0.491001 5_1:+68280365 Msa0746190:CDS
GTAGTTGAAGGCTGTTGAAA+AGG 0.499081 5_1:+68278588 Msa0746190:five_prime_UTR
AAGTCGATGCTCTTCACCAT+AGG 0.501755 5_1:-68280086 None:intergenic
GATCGTATGTGGTTTAAAAG+TGG 0.503401 5_1:+68284678 Msa0746190:CDS
TGATGACTCTCTTTATAGTA+GGG 0.505641 5_1:-68279428 None:intergenic
ATTTAAGATTTCCCAGCTCA+AGG 0.507325 5_1:-68280357 None:intergenic
CCTCATCCTTTCCTTGAGCT+GGG 0.507544 5_1:+68280346 Msa0746190:CDS
GGTTTAAAAGTGGGCGTGAA+AGG 0.508005 5_1:+68284688 Msa0746190:CDS
GGCTTTCGACAAATCTTCCA+TGG 0.509166 5_1:-68279259 None:intergenic
GCAAAATAGGAGAAGCTTGG+AGG 0.510608 5_1:-68280415 None:intergenic
TATCTTTACAACTTTATCCA+TGG 0.510752 5_1:+68279242 Msa0746190:CDS
ACATGCATAATCTCAAGTTC+AGG 0.512733 5_1:-68280161 None:intergenic
CAGCGCCGTCGAGAGAAAGA+TGG 0.518583 5_1:-68278362 None:intergenic
CACTCCCATCTTTCTCTCGA+CGG 0.525816 5_1:+68278357 Msa0746190:five_prime_UTR
CGTGAACATTAATACCCCTA+TGG 0.529668 5_1:+68280070 Msa0746190:CDS
AAAGCAACACTATTGATCAA+TGG 0.531010 5_1:+68279562 Msa0746190:CDS
AATTTCCCTATCACAAAACT+CGG 0.531478 5_1:+68279399 Msa0746190:CDS
TCAATCTTCTCTTTCTAGGA+AGG 0.532385 5_1:+68279619 Msa0746190:CDS
GATCGAATTCTGATCGTATG+TGG 0.535765 5_1:+68284667 Msa0746190:CDS
AGTCGATGCTCTTCACCATA+GGG 0.541960 5_1:-68280085 None:intergenic
TGGATATATATGGTGTGGAT+TGG 0.542658 5_1:+68280043 Msa0746190:CDS
CATAAGTTAAGAAGAGGGGA+AGG 0.542713 5_1:+68278323 None:intergenic
ATGCCATGAACTGAAGAAGA+AGG 0.543298 5_1:-68278440 None:intergenic
TCTGCAAAATAGGAGAAGCT+TGG 0.545907 5_1:-68280418 None:intergenic
TATAAGAAAGAAAGAATGAA+AGG 0.546993 5_1:-68278527 None:intergenic
ATATACGACAAGATGTCGTC+GGG 0.547341 5_1:-68279222 None:intergenic
GGGAAATCTTAAATGATGTA+GGG 0.548239 5_1:+68280366 Msa0746190:CDS
TTTGTCAGTTTCCATATCCA+CGG 0.550868 5_1:+68284457 Msa0746190:intron
ATCGTATGTGGTTTAAAAGT+GGG 0.553312 5_1:+68284679 Msa0746190:CDS
AGCGCCGTCGAGAGAAAGAT+GGG 0.553518 5_1:-68278361 None:intergenic
GAGAAAGTTTGCTGGTGTTG+GGG 0.562287 5_1:-68278393 None:intergenic
CCCAGCTCAAGGAAAGGATG+AGG 0.567674 5_1:-68280346 None:intergenic
TGTGCTTGGCAGCAGTGAGA+AGG 0.571694 5_1:+68279350 Msa0746190:CDS
TACCGTGGATATATATGGTG+TGG 0.572259 5_1:+68280038 Msa0746190:CDS
GAAAGAAAGAATGAAAGGAA+TGG 0.576799 5_1:-68278522 None:intergenic
GATATACGACAAGATGTCGT+CGG 0.577491 5_1:-68279223 None:intergenic
TAAAGTCGCAATTAAAGGGA+TGG 0.580153 5_1:-68279755 None:intergenic
AGGGAAATTCATGAGATACC+TGG 0.588256 5_1:-68279385 None:intergenic
AGAGAGTCATCAATTTAGAT+GGG 0.590259 5_1:+68279439 Msa0746190:CDS
GTTGAACTGGGAGGTTGCGT+TGG 0.591594 5_1:+68284543 Msa0746190:CDS
CTACGTTCATTGGTTTACCG+TGG 0.595791 5_1:+68280023 Msa0746190:CDS
CCACCTTCTAGATACTAAGA+TGG 0.596886 5_1:-68279280 None:intergenic
GCTTCAAGGCGAATTAGTAG+TGG 0.601872 5_1:+68284722 Msa0746190:CDS
ATTTCCCTATCACAAAACTC+GGG 0.603170 5_1:+68279400 Msa0746190:CDS
AGATTTCCCAGCTCAAGGAA+AGG 0.605408 5_1:-68280352 None:intergenic
GCATGTGGACATATATTCGA+CGG 0.605548 5_1:+68280178 Msa0746190:CDS
AGAAGGAACTACTACCAGCC+AGG 0.609158 5_1:+68279367 Msa0746190:CDS
TGAACTTGAGATTATGCATG+TGG 0.623369 5_1:+68280163 Msa0746190:CDS
ATCCACACCATATATATCCA+CGG 0.625357 5_1:-68280040 None:intergenic
CTTCAAGGCGAATTAGTAGT+GGG 0.626117 5_1:+68284723 Msa0746190:CDS
AAATTCATGAGATACCTGGC+TGG 0.633407 5_1:-68279381 None:intergenic
CCATCTTAGTATCTAGAAGG+TGG 0.640967 5_1:+68279280 Msa0746190:CDS
GTTCTGGGTCCCTATTGGGA+AGG 0.647615 5_1:+68284630 Msa0746190:CDS
GTCGATGCTCTTCACCATAG+GGG 0.676683 5_1:-68280084 None:intergenic
CCTTACTCGAGATAAAATGG+AGG 0.698706 5_1:+68279182 Msa0746190:exon
TGAAACATTCTCCCACAACG+AGG 0.775786 5_1:+68284512 Msa0746190:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATATGAATAACATTTTTT+TGG - chr5_1:68281105-68281124 None:intergenic 10.0%
!!! ATGTCATAAAAAATTATTTT+AGG - chr5_1:68281152-68281171 None:intergenic 10.0%
!!! ATTAATATTTGTTTTAGGTA+CGG + chr5_1:68278550-68278569 Msa0746190:five_prime_UTR 15.0%
!! AAACATAGAAATAAATCAAT+AGG - chr5_1:68278630-68278649 None:intergenic 15.0%
!!! TTGTTTCTATGTTATTATTA+AGG + chr5_1:68278728-68278747 Msa0746190:intron 15.0%
!!! TTTTATATATTTGTATAGCT+TGG - chr5_1:68279051-68279070 None:intergenic 15.0%
!! ATTCTACTTATATATATTTC+AGG + chr5_1:68279138-68279157 Msa0746190:intron 15.0%
!! TAAAATTGATTGTGAATATA+TGG - chr5_1:68280596-68280615 None:intergenic 15.0%
!! TAAGAAATAGGTATTTAAAT+AGG - chr5_1:68280784-68280803 None:intergenic 15.0%
!!! TAAACTAGTTTATAAGAAAT+AGG - chr5_1:68280796-68280815 None:intergenic 15.0%
!!! ATATTTAACATGACATTTTA+GGG + chr5_1:68280894-68280913 Msa0746190:intron 15.0%
!!! CAGTAATTAAAACTTTTTTT+TGG - chr5_1:68281019-68281038 None:intergenic 15.0%
!! AAAAATAAAAATAAAGAGAG+CGG - chr5_1:68281412-68281431 None:intergenic 15.0%
!!! TATCAATCTATTTTATAACA+TGG - chr5_1:68281772-68281791 None:intergenic 15.0%
!!! ATTTAATTTGTTTTACAGAT+TGG - chr5_1:68283386-68283405 None:intergenic 15.0%
!! AACGTTATAGAATATAAAAT+AGG + chr5_1:68283941-68283960 Msa0746190:intron 15.0%
!!! TTTAAGCTTTGTGTTTTTTA+GGG - chr5_1:68278491-68278510 None:intergenic 20.0%
!!! ATTTAAGCTTTGTGTTTTTT+AGG - chr5_1:68278492-68278511 None:intergenic 20.0%
!! TATAAGAAAGAAAGAATGAA+AGG - chr5_1:68278530-68278549 None:intergenic 20.0%
!! TGGTATCCAATAATAAAAAT+CGG + chr5_1:68279964-68279983 Msa0746190:CDS 20.0%
!!! CATATGTTATGCATTTTTTA+TGG + chr5_1:68280478-68280497 Msa0746190:intron 20.0%
!! AAGTGCAAATTTATTTATGA+AGG - chr5_1:68280528-68280547 None:intergenic 20.0%
!! AAAATAGAGTTTAATCTCAT+TGG - chr5_1:68280865-68280884 None:intergenic 20.0%
!!! GATATTTAACATGACATTTT+AGG + chr5_1:68280893-68280912 Msa0746190:intron 20.0%
!!! ATTAAAACTTTTTTTTGGAC+AGG - chr5_1:68281014-68281033 None:intergenic 20.0%
!! ATCATTTCAAAAGTTAGATT+TGG - chr5_1:68281313-68281332 None:intergenic 20.0%
!! ATAACAAAACAAGAAAGAAT+AGG - chr5_1:68281651-68281670 None:intergenic 20.0%
!!! TTTTTCATAAGCTCAAAAAT+AGG - chr5_1:68282084-68282103 None:intergenic 20.0%
!!! TTTTTGAGCTTATGAAAAAT+AGG + chr5_1:68282085-68282104 Msa0746190:intron 20.0%
!!! AGCGTTGAAAAATAAAAATT+GGG - chr5_1:68282529-68282548 None:intergenic 20.0%
!!! AAGCGTTGAAAAATAAAAAT+TGG - chr5_1:68282530-68282549 None:intergenic 20.0%
!! AAAACAATATCACAACAAAT+TGG - chr5_1:68283092-68283111 None:intergenic 20.0%
!! AAAGTTTAACACTTCTTATT+GGG - chr5_1:68283277-68283296 None:intergenic 20.0%
!!! CTGTTTCTAAGTATTTTTTT+TGG - chr5_1:68283457-68283476 None:intergenic 20.0%
!! CAAAAAAAATACTTAGAAAC+AGG + chr5_1:68283455-68283474 Msa0746190:intron 20.0%
!! ACATGTGAATGATAAAAATA+AGG + chr5_1:68283608-68283627 Msa0746190:intron 20.0%
!! GTGAAATTGGAATATAAAAT+AGG + chr5_1:68283688-68283707 Msa0746190:intron 20.0%
!!! TTCTAATGTGATTTTTTTGT+TGG - chr5_1:68283851-68283870 None:intergenic 20.0%
!!! AAAAGTTGAAATTTTAGAGT+TGG + chr5_1:68283876-68283895 Msa0746190:intron 20.0%
!!! TTCTAATGTGATTTTTTTGT+TGG - chr5_1:68283851-68283870 None:intergenic 20.0%
!!! AAAAAGTTGAAATTTAGAGT+TGG + chr5_1:68284128-68284147 Msa0746190:intron 20.0%
!! CATAATACAATGAGTTAAAA+TGG + chr5_1:68284232-68284251 Msa0746190:intron 20.0%
!!! TTTGTGTTTTTTAGGGTTTT+TGG - chr5_1:68278484-68278503 None:intergenic 25.0%
!! ATCTATAGCATCTTTTTATG+AGG + chr5_1:68278810-68278829 Msa0746190:intron 25.0%
!! TAGATGATATCATCATTTTC+TGG + chr5_1:68278835-68278854 Msa0746190:intron 25.0%
!! TTTTAACACTTATGCTTAGT+TGG + chr5_1:68279008-68279027 Msa0746190:intron 25.0%
! TATCTTTACAACTTTATCCA+TGG + chr5_1:68279242-68279261 Msa0746190:CDS 25.0%
!! AGAGATCTCAAATTTTTGAA+TGG - chr5_1:68279783-68279802 None:intergenic 25.0%
! ATCCAATAATAAAAATCGGA+TGG + chr5_1:68279968-68279987 Msa0746190:CDS 25.0%
!! TTCCATCCGATTTTTATTAT+TGG - chr5_1:68279973-68279992 None:intergenic 25.0%
! AAGATCTTCATTGAATGAAA+TGG - chr5_1:68280114-68280133 None:intergenic 25.0%
! ACTAAAAGTTTCTGCAAAAT+AGG - chr5_1:68280431-68280450 None:intergenic 25.0%
!!! CATTTTTTATGGTTATCGTT+TGG + chr5_1:68280489-68280508 Msa0746190:intron 25.0%
! ACTAGAGATCAAAATAGTTT+AGG + chr5_1:68280632-68280651 Msa0746190:intron 25.0%
! AATCTCCAAAAAATTAATGC+AGG + chr5_1:68280970-68280989 Msa0746190:intron 25.0%
!!! ATTAGCCTGCATTAATTTTT+TGG - chr5_1:68280978-68280997 None:intergenic 25.0%
! AAATGAAATGACAATTAGTC+AGG - chr5_1:68281072-68281091 None:intergenic 25.0%
!!! TAATAAGAGTAGTTCTAGTT+GGG + chr5_1:68281207-68281226 Msa0746190:intron 25.0%
! GTTAGATTTGGAAAGATAAT+GGG - chr5_1:68281301-68281320 None:intergenic 25.0%
! AGTTAGATTTGGAAAGATAA+TGG - chr5_1:68281302-68281321 None:intergenic 25.0%
! CAAAAGAGAAAATTATGCAT+GGG - chr5_1:68281542-68281561 None:intergenic 25.0%
! TCAAAAGAGAAAATTATGCA+TGG - chr5_1:68281543-68281562 None:intergenic 25.0%
! ATTTATGAAATGTCAACATG+TGG - chr5_1:68281743-68281762 None:intergenic 25.0%
!!! AGAAAAGCACTAAATCTAAT+GGG + chr5_1:68281832-68281851 Msa0746190:intron 25.0%
! TACTTTCATATTGTAGTTTG+TGG - chr5_1:68281871-68281890 None:intergenic 25.0%
! TATTATTCATAAGCTTGTCA+AGG - chr5_1:68282198-68282217 None:intergenic 25.0%
! ACTGAAAATGATTCTTCAAT+TGG - chr5_1:68282656-68282675 None:intergenic 25.0%
! AAAGATACATCTAACTACAT+GGG + chr5_1:68283045-68283064 Msa0746190:intron 25.0%
! ATTATGTAAGATTGGAACAA+AGG + chr5_1:68283155-68283174 Msa0746190:intron 25.0%
! TTATGTAAGATTGGAACAAA+GGG + chr5_1:68283156-68283175 Msa0746190:intron 25.0%
! AAGTTTAACACTTCTTATTG+GGG - chr5_1:68283276-68283295 None:intergenic 25.0%
! CAAAGTTTAACACTTCTTAT+TGG - chr5_1:68283278-68283297 None:intergenic 25.0%
!!! CAATAAGAAGTGTTAAACTT+TGG + chr5_1:68283276-68283295 Msa0746190:intron 25.0%
!! AAAACCTTTTATCATCTCAA+AGG - chr5_1:68283543-68283562 None:intergenic 25.0%
!! ACATACACAAAACCTATTTT+TGG - chr5_1:68283719-68283738 None:intergenic 25.0%
! ATTCTATAACAAAACCATAC+CGG - chr5_1:68283798-68283817 None:intergenic 25.0%
!! ACATACACAAAACCTATTTT+TGG - chr5_1:68283719-68283738 None:intergenic 25.0%
! TGTATTATGAGTGAAATTTG+TGG - chr5_1:68284221-68284240 None:intergenic 25.0%
!!! ATGTTTTGATTTGCATTCAT+TGG + chr5_1:68284391-68284410 Msa0746190:intron 25.0%
!!! TGTTTTGATTTGCATTCATT+GGG + chr5_1:68284392-68284411 Msa0746190:intron 25.0%
! ACAAAATTCAAATCACAACA+TGG - chr5_1:68284442-68284461 None:intergenic 25.0%
!! TGATATCTTTTTGCTTTACA+AGG - chr5_1:68284485-68284504 None:intergenic 25.0%
! TTGTAAAGCAAAAAGATATC+AGG + chr5_1:68284484-68284503 Msa0746190:CDS 25.0%
! TGTAAAGCAAAAAGATATCA+GGG + chr5_1:68284485-68284504 Msa0746190:CDS 25.0%
!! AACTATTAGCTCAAGTTTTT+GGG - chr5_1:68284613-68284632 None:intergenic 25.0%
GAAAGAAAGAATGAAAGGAA+TGG - chr5_1:68278525-68278544 None:intergenic 30.0%
TTTCATATCTTCAATGTGCT+TGG + chr5_1:68279336-68279355 Msa0746190:CDS 30.0%
AATTTCCCTATCACAAAACT+CGG + chr5_1:68279399-68279418 Msa0746190:CDS 30.0%
TGATGACTCTCTTTATAGTA+GGG - chr5_1:68279431-68279450 None:intergenic 30.0%
! TTGATGACTCTCTTTATAGT+AGG - chr5_1:68279432-68279451 None:intergenic 30.0%
AAGAGAGTCATCAATTTAGA+TGG + chr5_1:68279438-68279457 Msa0746190:CDS 30.0%
AGAGAGTCATCAATTTAGAT+GGG + chr5_1:68279439-68279458 Msa0746190:CDS 30.0%
TTTCATGGTGAACTTTCATT+TGG + chr5_1:68279530-68279549 Msa0746190:CDS 30.0%
AAAGCAACACTATTGATCAA+TGG + chr5_1:68279562-68279581 Msa0746190:CDS 30.0%
AGTATCAATCTTCTCTTTCT+AGG + chr5_1:68279615-68279634 Msa0746190:CDS 30.0%
GGAATAAAGTCGCAATTAAA+GGG - chr5_1:68279762-68279781 None:intergenic 30.0%
TGGAATAAAGTCGCAATTAA+AGG - chr5_1:68279763-68279782 None:intergenic 30.0%
TGAGTTCAAATCATCAAAGT+TGG + chr5_1:68279893-68279912 Msa0746190:CDS 30.0%
TTGTGTCATCTCAAGATTAT+AGG + chr5_1:68279933-68279952 Msa0746190:CDS 30.0%
TGTGTCATCTCAAGATTATA+GGG + chr5_1:68279934-68279953 Msa0746190:CDS 30.0%
! GGAAGTAAACTTGATTTTAC+TGG + chr5_1:68279989-68280008 Msa0746190:CDS 30.0%
AAACCAATGAACGTAGTTTA+AGG - chr5_1:68280019-68280038 None:intergenic 30.0%
!!! TGAATGGTTGAGTTGTTTTT+GGG - chr5_1:68280307-68280326 None:intergenic 30.0%
!! TTGAATGGTTGAGTTGTTTT+TGG - chr5_1:68280308-68280327 None:intergenic 30.0%
! AACTGTCTAAGATGTTTGAA+TGG - chr5_1:68280323-68280342 None:intergenic 30.0%
TGGGAAATCTTAAATGATGT+AGG + chr5_1:68280365-68280384 Msa0746190:CDS 30.0%
GGGAAATCTTAAATGATGTA+GGG + chr5_1:68280366-68280385 Msa0746190:CDS 30.0%
! TTTGCAGAAACTTTTAGTCA+TGG + chr5_1:68280433-68280452 Msa0746190:CDS 30.0%
!!! AATTTGCACTTTTGACTTAG+TGG + chr5_1:68280537-68280556 Msa0746190:intron 30.0%
!!! ATTTGCACTTTTGACTTAGT+GGG + chr5_1:68280538-68280557 Msa0746190:intron 30.0%
!! AGTTTTATAAGGCCTAATCT+TGG + chr5_1:68280663-68280682 Msa0746190:intron 30.0%
TTGGCATGGTCAAAAAATTT+AGG + chr5_1:68280682-68280701 Msa0746190:intron 30.0%
!! TTTAGGTTTGACCTTTTTGA+AGG + chr5_1:68280740-68280759 Msa0746190:intron 30.0%
GTCATATCAAACCTTCAAAA+AGG - chr5_1:68280754-68280773 None:intergenic 30.0%
AGGTATTTAAATAGGCTAAG+AGG - chr5_1:68280776-68280795 None:intergenic 30.0%
!! ATCTCATTGGTTTACTAACT+TGG - chr5_1:68280852-68280871 None:intergenic 30.0%
ATTAAAATAGGCAGTCAAGT+AGG + chr5_1:68281126-68281145 Msa0746190:intron 30.0%
TACTTGGCTAAAAAAAAGTC+AGG - chr5_1:68281181-68281200 None:intergenic 30.0%
!!! TGACTTTTTTTTAGCCAAGT+AGG + chr5_1:68281180-68281199 Msa0746190:intron 30.0%
!! CTAATAAGAGTAGTTCTAGT+TGG + chr5_1:68281206-68281225 Msa0746190:intron 30.0%
!! ATGATTGCTTTTCTCACATA+AGG + chr5_1:68281459-68281478 Msa0746190:intron 30.0%
AAATGACCAAAAAACTCCAA+CGG - chr5_1:68281585-68281604 None:intergenic 30.0%
! TTTTAAGCAACTTCGTATGT+TGG + chr5_1:68281613-68281632 Msa0746190:intron 30.0%
! TTAGATTTAGTGCTTTTCTC+TGG - chr5_1:68281831-68281850 None:intergenic 30.0%
!! GAGAAAAGCACTAAATCTAA+TGG + chr5_1:68281831-68281850 Msa0746190:intron 30.0%
TTAAATATGCGTTCCAACAT+GGG - chr5_1:68282304-68282323 None:intergenic 30.0%
AAGTAAGATTGTAACGATCA+AGG + chr5_1:68282367-68282386 Msa0746190:intron 30.0%
TGGTACTTAGGATATTGTTA+AGG - chr5_1:68282463-68282482 None:intergenic 30.0%
ACATGGAAAAAATGGTACTT+AGG - chr5_1:68282475-68282494 None:intergenic 30.0%
CAATAAACTCTGATACTATG+TGG + chr5_1:68282589-68282608 Msa0746190:intron 30.0%
CTATGTGGAAAAATGTTTAG+AGG + chr5_1:68282604-68282623 Msa0746190:intron 30.0%
!! ATTGAATTCATTTCTGGAGT+CGG + chr5_1:68282698-68282717 Msa0746190:intron 30.0%
GTTATGCACCAAATAAAAGA+GGG - chr5_1:68283021-68283040 None:intergenic 30.0%
GTAGTTAGATGTATCTTTCT+AGG - chr5_1:68283043-68283062 None:intergenic 30.0%
GAAAGATACATCTAACTACA+TGG + chr5_1:68283044-68283063 Msa0746190:intron 30.0%
AAGATACATCTAACTACATG+GGG + chr5_1:68283046-68283065 Msa0746190:intron 30.0%
TGAGACCCGATTAATAATAT+AGG + chr5_1:68283230-68283249 Msa0746190:intron 30.0%
!! AGGAGACATATAGTCATTTT+AGG - chr5_1:68283329-68283348 None:intergenic 30.0%
TTAGTCTCGGAAAAAAAAAG+AGG + chr5_1:68283359-68283378 Msa0746190:intron 30.0%
TTCTATAACAAAACCATACC+GGG - chr5_1:68283797-68283816 None:intergenic 30.0%
! AACAATTTTTACCTCGTTGT+GGG - chr5_1:68284526-68284545 None:intergenic 30.0%
GAGGTAAAAATTGTTGAACT+GGG + chr5_1:68284531-68284550 Msa0746190:CDS 30.0%
! GAACTATTAGCTCAAGTTTT+TGG - chr5_1:68284614-68284633 None:intergenic 30.0%
AAAACTTGAGCTAATAGTTC+TGG + chr5_1:68284614-68284633 Msa0746190:CDS 30.0%
AAACTTGAGCTAATAGTTCT+GGG + chr5_1:68284615-68284634 Msa0746190:CDS 30.0%
ATCGTATGTGGTTTAAAAGT+GGG + chr5_1:68284679-68284698 Msa0746190:CDS 30.0%
AGGATTAACAAAAAGCTTCA+AGG + chr5_1:68284708-68284727 Msa0746190:CDS 30.0%
AGAAAGATGGGAGTGAATTT+GGG - chr5_1:68278352-68278371 None:intergenic 35.0%
CTAAAAACGAATTCCAGCAA+CGG - chr5_1:68278774-68278793 None:intergenic 35.0%
GTGATATTTATATGCTTGCG+TGG + chr5_1:68278980-68278999 Msa0746190:intron 35.0%
GCTAAAGCTATACAGAGTTA+CGG + chr5_1:68279107-68279126 Msa0746190:intron 35.0%
GAACCTTACTCGAGATAAAA+TGG + chr5_1:68279179-68279198 Msa0746190:exon 35.0%
AAGCCATCTTAGTATCTAGA+AGG + chr5_1:68279277-68279296 Msa0746190:CDS 35.0%
ATTTCCCTATCACAAAACTC+GGG + chr5_1:68279400-68279419 Msa0746190:CDS 35.0%
! TCAGTTCGTCAAGAATTTTC+AGG + chr5_1:68279491-68279510 Msa0746190:CDS 35.0%
! CAGTTCGTCAAGAATTTTCA+GGG + chr5_1:68279492-68279511 Msa0746190:CDS 35.0%
!! GGATACTTTTTGCAATTGCA+AGG + chr5_1:68279583-68279602 Msa0746190:CDS 35.0%
! TCAATCTTCTCTTTCTAGGA+AGG + chr5_1:68279619-68279638 Msa0746190:CDS 35.0%
CTTCATCTCTAAACCATCTT+CGG + chr5_1:68279712-68279731 Msa0746190:CDS 35.0%
TAAAGTCGCAATTAAAGGGA+TGG - chr5_1:68279758-68279777 None:intergenic 35.0%
ATCGCTTGAAGAAGTAGAAT+TGG + chr5_1:68279803-68279822 Msa0746190:CDS 35.0%
! CAAGATTATAGGGTGCTATA+TGG + chr5_1:68279944-68279963 Msa0746190:CDS 35.0%
TTGCCTTAAACTACGTTCAT+TGG + chr5_1:68280013-68280032 Msa0746190:CDS 35.0%
TGGTTTACCGTGGATATATA+TGG + chr5_1:68280033-68280052 Msa0746190:CDS 35.0%
ATCCACACCATATATATCCA+CGG - chr5_1:68280043-68280062 None:intergenic 35.0%
TGGATATATATGGTGTGGAT+TGG + chr5_1:68280043-68280062 Msa0746190:CDS 35.0%
ACATGCATAATCTCAAGTTC+AGG - chr5_1:68280164-68280183 None:intergenic 35.0%
TGAACTTGAGATTATGCATG+TGG + chr5_1:68280163-68280182 Msa0746190:CDS 35.0%
!!! GAATGGTTGAGTTGTTTTTG+GGG - chr5_1:68280306-68280325 None:intergenic 35.0%
! ATTTAAGATTTCCCAGCTCA+AGG - chr5_1:68280360-68280379 None:intergenic 35.0%
! ATGTAGGGTATGATCTTTTG+TGG + chr5_1:68280381-68280400 Msa0746190:CDS 35.0%
!! AGGCCAAGCTAAGTTTTATA+AGG + chr5_1:68280652-68280671 Msa0746190:intron 35.0%
! AGGCCTTATAAAACTTAGCT+TGG - chr5_1:68280658-68280677 None:intergenic 35.0%
! TTTTTGACCATGCCAAGATT+AGG - chr5_1:68280678-68280697 None:intergenic 35.0%
!! CACGTCATAGGCTTATTTTT+AGG + chr5_1:68280723-68280742 Msa0746190:intron 35.0%
ACTCTTATTAGAAGCCTACT+TGG - chr5_1:68281197-68281216 None:intergenic 35.0%
!! AGATTTGGAAAGATAATGGG+TGG - chr5_1:68281298-68281317 None:intergenic 35.0%
!!! CTTTTGAAATGATTCCTACG+CGG + chr5_1:68281320-68281339 Msa0746190:intron 35.0%
AAAATAAAGAGAGCGGACAT+AGG - chr5_1:68281405-68281424 None:intergenic 35.0%
GCAATCATCAAAGAATAGAC+AGG - chr5_1:68281447-68281466 None:intergenic 35.0%
!!! TAACTACCGTTGGAGTTTTT+TGG + chr5_1:68281576-68281595 Msa0746190:intron 35.0%
CGAAGTTGCTTAAAAACACA+TGG - chr5_1:68281608-68281627 None:intergenic 35.0%
!! ATCTAATGGGCTTGCTTAAT+AGG + chr5_1:68281845-68281864 Msa0746190:intron 35.0%
ATATTCATTCGTCAGCTTGA+GGG - chr5_1:68281936-68281955 None:intergenic 35.0%
ATCTCCATATACACCTCTAA+CGG + chr5_1:68282044-68282063 Msa0746190:intron 35.0%
GTTAAATATGCGTTCCAACA+TGG - chr5_1:68282305-68282324 None:intergenic 35.0%
CAGATGAATCTATCTAGACA+GGG - chr5_1:68282414-68282433 None:intergenic 35.0%
! ATGAGAGCACATGGAAAAAA+TGG - chr5_1:68282483-68282502 None:intergenic 35.0%
TAAAAATTGGGTCCAAGCTA+TGG - chr5_1:68282517-68282536 None:intergenic 35.0%
AACGCTTGTTCAATAGATGA+TGG + chr5_1:68282543-68282562 Msa0746190:intron 35.0%
ACGCTTGTTCAATAGATGAT+GGG + chr5_1:68282544-68282563 Msa0746190:intron 35.0%
GACACGATTGAATTCATTTC+TGG + chr5_1:68282692-68282711 Msa0746190:intron 35.0%
CTATGAACAATTGTAGACTC+AGG + chr5_1:68282784-68282803 Msa0746190:intron 35.0%
!! ACTTTTGAGTCATTTTCGAC+TGG + chr5_1:68282976-68282995 Msa0746190:intron 35.0%
!! CTTTTGAGTCATTTTCGACT+GGG + chr5_1:68282977-68282996 Msa0746190:intron 35.0%
! CATCTGTACCCTCTTTTATT+TGG + chr5_1:68283010-68283029 Msa0746190:intron 35.0%
GGTTATGCACCAAATAAAAG+AGG - chr5_1:68283022-68283041 None:intergenic 35.0%
! TAATCTCGAGTCTTGTGTAT+TGG - chr5_1:68283139-68283158 None:intergenic 35.0%
GACTCGAGATTATGTAAGAT+TGG + chr5_1:68283147-68283166 Msa0746190:intron 35.0%
CGCTGCCTATATTATTAATC+GGG - chr5_1:68283238-68283257 None:intergenic 35.0%
CCGCTGCCTATATTATTAAT+CGG - chr5_1:68283239-68283258 None:intergenic 35.0%
CCGATTAATAATATAGGCAG+CGG + chr5_1:68283236-68283255 Msa0746190:intron 35.0%
AAACAGGAGAATGCTAACAA+AGG + chr5_1:68283471-68283490 Msa0746190:intron 35.0%
AACAGGAGAATGCTAACAAA+GGG + chr5_1:68283472-68283491 Msa0746190:intron 35.0%
TTTATCATCTCAAAGGAACG+CGG - chr5_1:68283536-68283555 None:intergenic 35.0%
!! CGTTCCTTTGAGATGATAAA+AGG + chr5_1:68283536-68283555 Msa0746190:intron 35.0%
AAATAGGCTGCACCAAAAAT+AGG + chr5_1:68283704-68283723 Msa0746190:intron 35.0%
TGTACGTACGTACATACATA+CGG + chr5_1:68283736-68283755 Msa0746190:intron 35.0%
AAATAGGCTGCACCAAAAAT+AGG + chr5_1:68283704-68283723 Msa0746190:intron 35.0%
TGTACGTACGTACATACATA+CGG + chr5_1:68283736-68283755 Msa0746190:intron 35.0%
ATGCCTATATTGCATAGGTA+CGG + chr5_1:68284016-68284035 Msa0746190:intron 35.0%
AAGCATGGGTACTTGTAAAA+CGG - chr5_1:68284317-68284336 None:intergenic 35.0%
TTTGTCAGTTTCCATATCCA+CGG + chr5_1:68284457-68284476 Msa0746190:intron 35.0%
! CAACAATTTTTACCTCGTTG+TGG - chr5_1:68284527-68284546 None:intergenic 35.0%
CGAGGTAAAAATTGTTGAAC+TGG + chr5_1:68284530-68284549 Msa0746190:CDS 35.0%
GTAAAAATTGTTGAACTGGG+AGG + chr5_1:68284534-68284553 Msa0746190:CDS 35.0%
GATCGTATGTGGTTTAAAAG+TGG + chr5_1:68284678-68284697 Msa0746190:CDS 35.0%
GAGAAAGATGGGAGTGAATT+TGG - chr5_1:68278353-68278372 None:intergenic 40.0%
!! TGAGAAAGTTTGCTGGTGTT+GGG - chr5_1:68278397-68278416 None:intergenic 40.0%
AGGAAAGTGAGAAAGTTTGC+TGG - chr5_1:68278404-68278423 None:intergenic 40.0%
GATCCTTCTTCTTCAGTTCA+TGG + chr5_1:68278437-68278456 Msa0746190:five_prime_UTR 40.0%
ATGCCATGAACTGAAGAAGA+AGG - chr5_1:68278443-68278462 None:intergenic 40.0%
TCCATAAACTGCGTAGTTGA+AGG + chr5_1:68278576-68278595 Msa0746190:five_prime_UTR 40.0%
GTAGTTGAAGGCTGTTGAAA+AGG + chr5_1:68278588-68278607 Msa0746190:five_prime_UTR 40.0%
! GATATTTCTATCACCGTTGC+TGG + chr5_1:68278758-68278777 Msa0746190:intron 40.0%
! CCTCCATTTTATCTCGAGTA+AGG - chr5_1:68279185-68279204 None:intergenic 40.0%
CCTTACTCGAGATAAAATGG+AGG + chr5_1:68279182-68279201 Msa0746190:exon 40.0%
ATATACGACAAGATGTCGTC+GGG - chr5_1:68279225-68279244 None:intergenic 40.0%
GATATACGACAAGATGTCGT+CGG - chr5_1:68279226-68279245 None:intergenic 40.0%
CCACCTTCTAGATACTAAGA+TGG - chr5_1:68279283-68279302 None:intergenic 40.0%
CCATCTTAGTATCTAGAAGG+TGG + chr5_1:68279280-68279299 Msa0746190:CDS 40.0%
AAATTCATGAGATACCTGGC+TGG - chr5_1:68279384-68279403 None:intergenic 40.0%
AGGGAAATTCATGAGATACC+TGG - chr5_1:68279388-68279407 None:intergenic 40.0%
!! GAAACCCGAGTTTTGTGATA+GGG - chr5_1:68279407-68279426 None:intergenic 40.0%
!! AGAAACCCGAGTTTTGTGAT+AGG - chr5_1:68279408-68279427 None:intergenic 40.0%
!! CACAATCGTCGATTCTTTCA+TGG + chr5_1:68279515-68279534 Msa0746190:CDS 40.0%
!! GACAATTTTCAAGCCGAAGA+TGG - chr5_1:68279728-68279747 None:intergenic 40.0%
TACCGTGGATATATATGGTG+TGG + chr5_1:68280038-68280057 Msa0746190:CDS 40.0%
CGTGAACATTAATACCCCTA+TGG + chr5_1:68280070-68280089 Msa0746190:CDS 40.0%
GCATGTGGACATATATTCGA+CGG + chr5_1:68280178-68280197 Msa0746190:CDS 40.0%
!! GAGTCATACAAGTCTTGTTC+AGG + chr5_1:68280274-68280293 Msa0746190:intron 40.0%
TCTGCAAAATAGGAGAAGCT+TGG - chr5_1:68280421-68280440 None:intergenic 40.0%
TTAGTCATGGTGAGTGAACA+AGG + chr5_1:68280446-68280465 Msa0746190:intron 40.0%
TATAAGGCCTAATCTTGGCA+TGG + chr5_1:68280668-68280687 Msa0746190:intron 40.0%
! TGGACTATTTTCACCTCCAT+TGG + chr5_1:68281268-68281287 Msa0746190:intron 40.0%
TCATCAAAGAATAGACAGGC+AGG - chr5_1:68281443-68281462 None:intergenic 40.0%
! AATGACGCTTTTAACCCCAA+CGG + chr5_1:68281502-68281521 Msa0746190:intron 40.0%
ACAATAGTTAACTGCCGTTG+GGG - chr5_1:68281519-68281538 None:intergenic 40.0%
GACAATAGTTAACTGCCGTT+GGG - chr5_1:68281520-68281539 None:intergenic 40.0%
TATTCATTCGTCAGCTTGAG+GGG - chr5_1:68281935-68281954 None:intergenic 40.0%
GATATTCATTCGTCAGCTTG+AGG - chr5_1:68281937-68281956 None:intergenic 40.0%
! CGATCATTCCTAACTTGCAA+AGG + chr5_1:68281956-68281975 Msa0746190:intron 40.0%
! TTCCTAACTTGCAAAGGTCA+TGG + chr5_1:68281962-68281981 Msa0746190:intron 40.0%
! CTCTTGTTGCTTACTCTTGA+TGG - chr5_1:68282346-68282365 None:intergenic 40.0%
GCAGATGAATCTATCTAGAC+AGG - chr5_1:68282415-68282434 None:intergenic 40.0%
CAAAGAGACAAGAAGTCAGT+TGG - chr5_1:68282440-68282459 None:intergenic 40.0%
TTTCCTCATCATCCATAGCT+TGG + chr5_1:68282502-68282521 Msa0746190:intron 40.0%
TTTGCAAGAATCAACACCCT+CGG - chr5_1:68282747-68282766 None:intergenic 40.0%
TTCTTGCAAACCGAAGACAT+TGG + chr5_1:68282757-68282776 Msa0746190:intron 40.0%
TCATAGTCCTCCAATGTCTT+CGG - chr5_1:68282770-68282789 None:intergenic 40.0%
ACAATTGTAGACTCAGGTTC+AGG + chr5_1:68282790-68282809 Msa0746190:intron 40.0%
!! AACTAGGACTGACTCGAAAT+AGG + chr5_1:68282818-68282837 Msa0746190:intron 40.0%
GAACATGGATGAATGCTCTA+GGG + chr5_1:68282864-68282883 Msa0746190:intron 40.0%
AGGACCAAGGATCAGAAAAT+CGG + chr5_1:68282892-68282911 Msa0746190:intron 40.0%
!! ATGGGGATCCAATTTGTTGT+GGG + chr5_1:68283063-68283082 Msa0746190:intron 40.0%
ATTGGATCCCCACAACAAAT+TGG - chr5_1:68283074-68283093 None:intergenic 40.0%
TAACACTTCTTATTGGGGTG+AGG - chr5_1:68283271-68283290 None:intergenic 40.0%
!! AAAGAGCGCTATAGAACTGT+CGG - chr5_1:68283576-68283595 None:intergenic 40.0%
! GTTGCATGTTACTTGATGCA+TGG + chr5_1:68283656-68283675 Msa0746190:intron 40.0%
TACTTGATGCATGGAAGTTG+AGG + chr5_1:68283665-68283684 Msa0746190:intron 40.0%
ACTTGATGCATGGAAGTTGA+GGG + chr5_1:68283666-68283685 Msa0746190:intron 40.0%
ATGGAAGTTGAGGGTGAAAT+TGG + chr5_1:68283675-68283694 Msa0746190:intron 40.0%
ATGCCTATGTTGCATAGGTA+CGG + chr5_1:68283763-68283782 Msa0746190:intron 40.0%
GATGCATGCCTATATTGCAT+AGG + chr5_1:68284011-68284030 Msa0746190:intron 40.0%
TGCCTATATTGCATAGGTAC+GGG + chr5_1:68284017-68284036 Msa0746190:intron 40.0%
TACCCGTACCTATGCAATAT+AGG - chr5_1:68284022-68284041 None:intergenic 40.0%
ATATTGCATAGGTACGGGTA+CGG + chr5_1:68284022-68284041 Msa0746190:intron 40.0%
! TGCATGCATATCTGAAGCAT+GGG - chr5_1:68284331-68284350 None:intergenic 40.0%
! ATGCATGCATATCTGAAGCA+TGG - chr5_1:68284332-68284351 None:intergenic 40.0%
TTTACAAGGAACCGTGGATA+TGG - chr5_1:68284471-68284490 None:intergenic 40.0%
! TTTTGCTTTACAAGGAACCG+TGG - chr5_1:68284477-68284496 None:intergenic 40.0%
!! TAATAGTTCTGGGTCCCTAT+TGG + chr5_1:68284625-68284644 Msa0746190:CDS 40.0%
!! AATAGTTCTGGGTCCCTATT+GGG + chr5_1:68284626-68284645 Msa0746190:CDS 40.0%
GAGTCATTTCCTTCCCAATA+GGG - chr5_1:68284642-68284661 None:intergenic 40.0%
TGAGTCATTTCCTTCCCAAT+AGG - chr5_1:68284643-68284662 None:intergenic 40.0%
TTGGGAAGGAAATGACTCAT+TGG + chr5_1:68284644-68284663 Msa0746190:CDS 40.0%
TGGGAAGGAAATGACTCATT+GGG + chr5_1:68284645-68284664 Msa0746190:CDS 40.0%
GATCGAATTCTGATCGTATG+TGG + chr5_1:68284667-68284686 Msa0746190:CDS 40.0%
CTTCAAGGCGAATTAGTAGT+GGG + chr5_1:68284723-68284742 Msa0746190:CDS 40.0%
! GCAGCATTTTCATAACTCGT+TGG + chr5_1:68284818-68284837 Msa0746190:three_prime_UTR 40.0%
!! GAGAAAGTTTGCTGGTGTTG+GGG - chr5_1:68278396-68278415 None:intergenic 45.0%
!! GTGAGAAAGTTTGCTGGTGT+TGG - chr5_1:68278398-68278417 None:intergenic 45.0%
AAGGATCGTCGTAGAGAGAT+AGG - chr5_1:68278424-68278443 None:intergenic 45.0%
GCCTTCAACTACGCAGTTTA+TGG - chr5_1:68278580-68278599 None:intergenic 45.0%
GGCTTTCGACAAATCTTCCA+TGG - chr5_1:68279262-68279281 None:intergenic 45.0%
!! CTACGTTCATTGGTTTACCG+TGG + chr5_1:68280023-68280042 Msa0746190:CDS 45.0%
AGTCGATGCTCTTCACCATA+GGG - chr5_1:68280088-68280107 None:intergenic 45.0%
AAGTCGATGCTCTTCACCAT+AGG - chr5_1:68280089-68280108 None:intergenic 45.0%
! GACGGTTAGTCATAAAGTGC+TGG + chr5_1:68280196-68280215 Msa0746190:intron 45.0%
AGATTTCCCAGCTCAAGGAA+AGG - chr5_1:68280355-68280374 None:intergenic 45.0%
GCAAAATAGGAGAAGCTTGG+AGG - chr5_1:68280418-68280437 None:intergenic 45.0%
TTTGACCTGTAGCACGTCAT+AGG + chr5_1:68280711-68280730 Msa0746190:intron 45.0%
ATAAGCCTATGACGTGCTAC+AGG - chr5_1:68280719-68280738 None:intergenic 45.0%
! GTTCTAGTTGGGTTTCACGT+AGG + chr5_1:68281218-68281237 Msa0746190:intron 45.0%
AGTTGGGTTTCACGTAGGTT+AGG + chr5_1:68281223-68281242 Msa0746190:intron 45.0%
TTTCACGTAGGTTAGGTCGT+AGG + chr5_1:68281230-68281249 Msa0746190:intron 45.0%
AAATAGTCCAGCCGATCGAT+AGG - chr5_1:68281258-68281277 None:intergenic 45.0%
!! GATAATGGGTGGATGACCAA+TGG - chr5_1:68281287-68281306 None:intergenic 45.0%
GGACAATAGTTAACTGCCGT+TGG - chr5_1:68281521-68281540 None:intergenic 45.0%
CAACGGTAGTTAACTACAGC+TGG - chr5_1:68281568-68281587 None:intergenic 45.0%
CAGCTGTAGTTAACTACCGT+TGG + chr5_1:68281566-68281585 Msa0746190:intron 45.0%
CACCATGACCTTTGCAAGTT+AGG - chr5_1:68281967-68281986 None:intergenic 45.0%
TCCACCTGTGAGACTAAAGT+CGG + chr5_1:68282016-68282035 Msa0746190:intron 45.0%
! CAGACCGTTAGAGGTGTATA+TGG - chr5_1:68282051-68282070 None:intergenic 45.0%
TACACCTCTAACGGTCTGTT+TGG + chr5_1:68282053-68282072 Msa0746190:intron 45.0%
CAATCCAAACAGACCGTTAG+AGG - chr5_1:68282060-68282079 None:intergenic 45.0%
! GATGAGGAAATGAGAGCACA+TGG - chr5_1:68282492-68282511 None:intergenic 45.0%
GGTCGTTGATACATTGGAGT+TGG + chr5_1:68282719-68282738 Msa0746190:intron 45.0%
TTGCAAACCGAAGACATTGG+AGG + chr5_1:68282760-68282779 Msa0746190:intron 45.0%
!! TCAGGTTCAGGTGTTGAACT+AGG + chr5_1:68282802-68282821 Msa0746190:intron 45.0%
GGAACATGGATGAATGCTCT+AGG + chr5_1:68282863-68282882 Msa0746190:intron 45.0%
!! ATGAATGCTCTAGGGATGCT+AGG + chr5_1:68282872-68282891 Msa0746190:intron 45.0%
! GAGTCCGATTTTCTGATCCT+TGG - chr5_1:68282899-68282918 None:intergenic 45.0%
CAGAAAATCGGACTCAGACT+TGG + chr5_1:68282904-68282923 Msa0746190:intron 45.0%
!! CATGGGGATCCAATTTGTTG+TGG + chr5_1:68283062-68283081 Msa0746190:intron 45.0%
!! TGGGGATCCAATTTGTTGTG+GGG + chr5_1:68283064-68283083 Msa0746190:intron 45.0%
! CCTTCACGACATGTTAGTCT+CGG + chr5_1:68283346-68283365 Msa0746190:intron 45.0%
GGAGAATGCTAACAAAGGGT+AGG + chr5_1:68283476-68283495 Msa0746190:intron 45.0%
GAACATGGGATAGAGAGTGA+AGG - chr5_1:68283514-68283533 None:intergenic 45.0%
GATGCATGCCTATGTTGCAT+AGG + chr5_1:68283758-68283777 Msa0746190:intron 45.0%
TGCCTATGTTGCATAGGTAC+GGG + chr5_1:68283764-68283783 Msa0746190:intron 45.0%
TACCCGTACCTATGCAACAT+AGG - chr5_1:68283769-68283788 None:intergenic 45.0%
ATGTTGCATAGGTACGGGTA+CGG + chr5_1:68283769-68283788 Msa0746190:intron 45.0%
! AAACGGTGAAGTACCAGTAC+CGG - chr5_1:68284300-68284319 None:intergenic 45.0%
TGAAACATTCTCCCACAACG+AGG + chr5_1:68284512-68284531 Msa0746190:CDS 45.0%
GGTTTAAAAGTGGGCGTGAA+AGG + chr5_1:68284688-68284707 Msa0746190:CDS 45.0%
GCTTCAAGGCGAATTAGTAG+TGG + chr5_1:68284722-68284741 Msa0746190:CDS 45.0%
!!! TTATAATTAATATTTGTTTT+AGG + chr5_1:68278545-68278564 Msa0746190:five_prime_UTR 5.0%
!!! TATTCATATTTTATTAAAAT+AGG + chr5_1:68281114-68281133 Msa0746190:intron 5.0%
CACTCCCATCTTTCTCTCGA+CGG + chr5_1:68278357-68278376 Msa0746190:five_prime_UTR 50.0%
GGTGCAAGCTTTCTGCTCTA+AGG + chr5_1:68279301-68279320 Msa0746190:CDS 50.0%
AGAAGGAACTACTACCAGCC+AGG + chr5_1:68279367-68279386 Msa0746190:CDS 50.0%
GTCGATGCTCTTCACCATAG+GGG - chr5_1:68280087-68280106 None:intergenic 50.0%
ACCTCATCCTTTCCTTGAGC+TGG + chr5_1:68280345-68280364 Msa0746190:CDS 50.0%
CCTCATCCTTTCCTTGAGCT+GGG + chr5_1:68280346-68280365 Msa0746190:CDS 50.0%
AATGGGTGGATGACCAATGG+AGG - chr5_1:68281284-68281303 None:intergenic 50.0%
TGCAAAGGTCATGGTGTGCT+TGG + chr5_1:68281971-68281990 Msa0746190:intron 50.0%
GCAAAGGTCATGGTGTGCTT+GGG + chr5_1:68281972-68281991 Msa0746190:intron 50.0%
TCTCACAGGTGGAACCAACA+AGG - chr5_1:68282009-68282028 None:intergenic 50.0%
CCACCTGTGAGACTAAAGTC+GGG + chr5_1:68282017-68282036 Msa0746190:intron 50.0%
CATGGGAACATGGGGACTTA+GGG - chr5_1:68282287-68282306 None:intergenic 50.0%
ACATGGGAACATGGGGACTT+AGG - chr5_1:68282288-68282307 None:intergenic 50.0%
AAGTCCCCATGTTCCCATGT+TGG + chr5_1:68282288-68282307 Msa0746190:intron 50.0%
CGTTCCAACATGGGAACATG+GGG - chr5_1:68282295-68282314 None:intergenic 50.0%
GCGTTCCAACATGGGAACAT+GGG - chr5_1:68282296-68282315 None:intergenic 50.0%
TGCGTTCCAACATGGGAACA+TGG - chr5_1:68282297-68282316 None:intergenic 50.0%
GGTCCAAGCTATGGATGATG+AGG - chr5_1:68282508-68282527 None:intergenic 50.0%
GGAGTCGGTCGTTGATACAT+TGG + chr5_1:68282713-68282732 Msa0746190:intron 50.0%
!! ATACATTGGAGTTGGTGCCG+AGG + chr5_1:68282727-68282746 Msa0746190:intron 50.0%
!! TACATTGGAGTTGGTGCCGA+GGG + chr5_1:68282728-68282747 Msa0746190:intron 50.0%
CTCGAAATAGGCGACAACTC+AGG + chr5_1:68282830-68282849 Msa0746190:intron 50.0%
ATAGGCGACAACTCAGGTTC+AGG + chr5_1:68282836-68282855 Msa0746190:intron 50.0%
GACAACTCAGGTTCAGGAGT+GGG + chr5_1:68282842-68282861 Msa0746190:intron 50.0%
CCGAGACTAACATGTCGTGA+AGG - chr5_1:68283349-68283368 None:intergenic 50.0%
ATAGAGAGTGAAGGCGATGG+TGG - chr5_1:68283505-68283524 None:intergenic 50.0%
CTCAAAGGAACGCGGAACAT+GGG - chr5_1:68283528-68283547 None:intergenic 50.0%
TCTCAAAGGAACGCGGAACA+TGG - chr5_1:68283529-68283548 None:intergenic 50.0%
! AACGGTGAAGTACCAGTACC+GGG - chr5_1:68284299-68284318 None:intergenic 50.0%
AGCGCCGTCGAGAGAAAGAT+GGG - chr5_1:68278364-68278383 None:intergenic 55.0%
TGTGCTTGGCAGCAGTGAGA+AGG + chr5_1:68279350-68279369 Msa0746190:CDS 55.0%
CCCAGCTCAAGGAAAGGATG+AGG - chr5_1:68280349-68280368 None:intergenic 55.0%
GGTCGTAGGCTCCTATCGAT+CGG + chr5_1:68281244-68281263 Msa0746190:intron 55.0%
TACAAGTTGCGACTCCGCGT+AGG - chr5_1:68281337-68281356 None:intergenic 55.0%
GGGCAAACGACACACCTTGT+TGG + chr5_1:68281992-68282011 Msa0746190:intron 55.0%
CCCGACTTTAGTCTCACAGG+TGG - chr5_1:68282020-68282039 None:intergenic 55.0%
TCGCCCGACTTTAGTCTCAC+AGG - chr5_1:68282023-68282042 None:intergenic 55.0%
CGACAACTCAGGTTCAGGAG+TGG + chr5_1:68282841-68282860 Msa0746190:intron 55.0%
CAGGTTCAGGAGTGGGAACA+TGG + chr5_1:68282849-68282868 Msa0746190:intron 55.0%
! CTCTAGGGATGCTAGGACCA+AGG + chr5_1:68282879-68282898 Msa0746190:intron 55.0%
CGGGTCTCATCTCGAGTGTT+AGG - chr5_1:68283219-68283238 None:intergenic 55.0%
GGGATAGAGAGTGAAGGCGA+TGG - chr5_1:68283508-68283527 None:intergenic 55.0%
ATAGGTACGGGTACGGTACC+CGG + chr5_1:68283776-68283795 Msa0746190:intron 55.0%
ATAGGTACGGGTACGGTACG+CGG + chr5_1:68284029-68284048 Msa0746190:intron 55.0%
! ACGAGTATCGTACGCGTACC+CGG + chr5_1:68284261-68284280 Msa0746190:intron 55.0%
TATCGTACGCGTACCCGGTA+TGG + chr5_1:68284266-68284285 Msa0746190:intron 55.0%
ATCGTACGCGTACCCGGTAT+GGG + chr5_1:68284267-68284286 Msa0746190:intron 55.0%
TACCGGGTACACACCCATAC+CGG - chr5_1:68284283-68284302 None:intergenic 55.0%
TATGGGTGTGTACCCGGTAC+TGG + chr5_1:68284284-68284303 Msa0746190:intron 55.0%
GTTGAACTGGGAGGTTGCGT+TGG + chr5_1:68284543-68284562 Msa0746190:CDS 55.0%
! TGGGAGGTTGCGTTGGCAAT+TGG + chr5_1:68284550-68284569 Msa0746190:CDS 55.0%
! GTTCTGGGTCCCTATTGGGA+AGG + chr5_1:68284630-68284649 Msa0746190:CDS 55.0%
CAGCGCCGTCGAGAGAAAGA+TGG - chr5_1:68278365-68278384 None:intergenic 60.0%
GTAGGCTCCTATCGATCGGC+TGG + chr5_1:68281248-68281267 Msa0746190:intron 60.0%
TACGGGTACGGTACCCGGTA+TGG + chr5_1:68283781-68283800 Msa0746190:intron 60.0%
TACGGGTACGGTACGCGGTA+TGG + chr5_1:68284034-68284053 Msa0746190:intron 60.0%
GGGTACGCGTACGATACTCG+TGG - chr5_1:68284262-68284281 None:intergenic 60.0%
ACCCGGTATGGGTGTGTACC+CGG + chr5_1:68284278-68284297 Msa0746190:intron 60.0%
ACCGGGTACACACCCATACC+GGG - chr5_1:68284282-68284301 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 68278338 68284892 68278338 ID=Msa0746190;Name=Msa0746190
chr5_1 mRNA 68278338 68284892 68278338 ID=Msa0746190-mRNA-1;Parent=Msa0746190;Name=Msa0746190-mRNA-1;_AED=0.03;_eAED=0.03;_QI=310|1|1|1|0.33|0.25|4|122|488
chr5_1 exon 68278338 68278609 68278338 ID=Msa0746190-mRNA-1:exon:20313;Parent=Msa0746190-mRNA-1
chr5_1 exon 68279160 68280199 68279160 ID=Msa0746190-mRNA-1:exon:20314;Parent=Msa0746190-mRNA-1
chr5_1 exon 68280296 68280454 68280296 ID=Msa0746190-mRNA-1:exon:20315;Parent=Msa0746190-mRNA-1
chr5_1 exon 68284465 68284892 68284465 ID=Msa0746190-mRNA-1:exon:20316;Parent=Msa0746190-mRNA-1
chr5_1 five_prime_UTR 68278338 68278609 68278338 ID=Msa0746190-mRNA-1:five_prime_utr;Parent=Msa0746190-mRNA-1
chr5_1 five_prime_UTR 68279160 68279197 68279160 ID=Msa0746190-mRNA-1:five_prime_utr;Parent=Msa0746190-mRNA-1
chr5_1 CDS 68279198 68280199 68279198 ID=Msa0746190-mRNA-1:cds;Parent=Msa0746190-mRNA-1
chr5_1 CDS 68280296 68280454 68280296 ID=Msa0746190-mRNA-1:cds;Parent=Msa0746190-mRNA-1
chr5_1 CDS 68284465 68284770 68284465 ID=Msa0746190-mRNA-1:cds;Parent=Msa0746190-mRNA-1
chr5_1 three_prime_UTR 68284771 68284892 68284771 ID=Msa0746190-mRNA-1:three_prime_utr;Parent=Msa0746190-mRNA-1
Gene Sequence

>Msa0746190

ATGGAGGATAGAATTAGTCAATTGCCCGACGACATCTTGTCGTATATCTTTACAACTTTATCCATGGAAGATTTGTCGAAAGCCATCTTAGTATCTAGAAGGTGGTGCAAGCTTTCTGCTCTAAGGATAGATCTCTACTTTCATATCTTCAATGTGCTTGGCAGCAGTGAGAAGGAACTACTACCAGCCAGGTATCTCATGAATTTCCCTATCACAAAACTCGGGTTTCTCCCTACTATAAAGAGAGTCATCAATTTAGATGGGAGTGCAAATGAATTCGTAAAACGTGTAGATCAGTTCGTCAAGAATTTTCAGGGCACAATCGTCGATTCTTTCATGGTGAACTTTCATTTGGATTATGAACAAAGCAACACTATTGATCAATGGATACTTTTTGCAATTGCAAGGCGAGTTAGAAGTATCAATCTTCTCTTTCTAGGAAGGACTAATGTACATCACACTACTCGACACAATCGTTATAAATTTGACTTTGCGTTATTTTCGAAGACTAATGCTTCATCTCTAAACCATCTTCGGCTTGAAAATTGTCTTGTTTGCCATCCCTTTAATTGCGACTTTATTCCATTCAAAAATTTGAGATCTCTATCGCTTGAAGAAGTAGAATTGGATGAATCTTTCATTGAAAATGTGTTATCTAATTGTCTACAACTTCAAGAACTTTTTTTATTTTTATGTGAGTTCAAATCATCAAAGTTGGAGATAGTAAGTTCATCTTTGTGTCATCTCAAGATTATAGGGTGCTATATGGTATCCAATAATAAAAATCGGATGGAAGTAAACTTGATTTTACTGGATTGCCTTAAACTACGTTCATTGGTTTACCGTGGATATATATGGTGTGGATTGGATATCGTGAACATTAATACCCCTATGGTGAAGAGCATCGACTTCTCCATTTCATTCAATGAAGATCTTAATGCATTTGCTCAATGTGCAACTTTTCCTGAACTTGAGATTATGCATGTGGACATATATTCGACGGTTGCAGCCCCAAAAACAACTCAACCATTCAAACATCTTAGACAGTTGAACCTCATCCTTTCCTTGAGCTGGGAAATCTTAAATGATGTAGGGTATGATCTTTTGTGGATTTTAAACATCCTCCAAGCTTCTCCTATTTTGCAGAAACTTTTAGTCATGTTTCCATATCCACGGTTCCTTGTAAAGCAAAAAGATATCAGGGATGTTGAAACATTCTCCCACAACGAGGTAAAAATTGTTGAACTGGGAGGTTGCGTTGGCAATTGGTTTGAAATCGAGTTTGTTATGAATGTTTTGAAACATGCCCAAAAACTTGAGCTAATAGTTCTGGGTCCCTATTGGGAAGGAAATGACTCATTGGGATCGAATTCTGATCGTATGTGGTTTAAAAGTGGGCGTGAAAGGATTAACAAAAAGCTTCAAGGCGAATTAGTAGTGGGACGAAAAAAAGTTGTGCTCATATAA

Protein sequence

>Msa0746190

MEDRISQLPDDILSYIFTTLSMEDLSKAILVSRRWCKLSALRIDLYFHIFNVLGSSEKELLPARYLMNFPITKLGFLPTIKRVINLDGSANEFVKRVDQFVKNFQGTIVDSFMVNFHLDYEQSNTIDQWILFAIARRVRSINLLFLGRTNVHHTTRHNRYKFDFALFSKTNASSLNHLRLENCLVCHPFNCDFIPFKNLRSLSLEEVELDESFIENVLSNCLQLQELFLFLCEFKSSKLEIVSSSLCHLKIIGCYMVSNNKNRMEVNLILLDCLKLRSLVYRGYIWCGLDIVNINTPMVKSIDFSISFNEDLNAFAQCATFPELEIMHVDIYSTVAAPKTTQPFKHLRQLNLILSLSWEILNDVGYDLLWILNILQASPILQKLLVMFPYPRFLVKQKDIRDVETFSHNEVKIVELGGCVGNWFEIEFVMNVLKHAQKLELIVLGPYWEGNDSLGSNSDRMWFKSGRERINKKLQGELVVGRKKVVLI*