Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0746380 | XP_039689880.1 | 47.137 | 227 | 67 | 7 | 68 | 261 | 16 | 222 | 2.18e-41 | 153 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0746380 | G7JLM9 | 58.462 | 130 | 42 | 3 | 12 | 137 | 79 | 200 | 1.47e-33 | 130 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0746380 | Msa1224540 | 0.818925 | 1.520113e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0746380 | MtrunA17_Chr4g0075851 | 61.905 | 63 | 23 | 1 | 12 | 73 | 79 | 141 | 8.34e-20 | 83.6 |
| Msa0746380 | MtrunA17_Chr4g0075811 | 66.667 | 60 | 20 | 0 | 202 | 261 | 28 | 87 | 5.64e-19 | 80.1 |
| Msa0746380 | MtrunA17_Chr4g0075841 | 62.857 | 70 | 18 | 1 | 68 | 137 | 5 | 66 | 2.51e-18 | 77.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 61 sgRNAs with CRISPR-Local
Find 158 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAACTCTTCGTGATAATTT+TGG | 0.137277 | 5_1:+68489999 | Msa0746380:three_prime_UTR |
| GACAATTCCACTTCCCTTCT+TGG | 0.194651 | 5_1:-68489453 | None:intergenic |
| CTTACATTCACTCACTTGTT+TGG | 0.211154 | 5_1:+68489518 | Msa0746380:CDS |
| GACAACTCCACTTCCCTTCT+TGG | 0.225568 | 5_1:-68489396 | None:intergenic |
| CGCAGCTCCTCCTCATCTTC+AGG | 0.290243 | 5_1:-68488955 | None:intergenic |
| TTACATTCACTCACTTGTTT+GGG | 0.319797 | 5_1:+68489519 | Msa0746380:CDS |
| AATAAGCCTGACTTCTTTGT+TGG | 0.323715 | 5_1:+68489641 | Msa0746380:CDS |
| CTCAGACACCTTTACCATCT+TGG | 0.338125 | 5_1:-68489615 | None:intergenic |
| GAGCCACCATCAGAAATTTC+AGG | 0.354687 | 5_1:-68489284 | None:intergenic |
| ACTCAATTGCAGCCTCTCTA+AGG | 0.372771 | 5_1:-68489026 | None:intergenic |
| TCAACTTTACTGTTTCAATC+TGG | 0.387747 | 5_1:+68489961 | Msa0746380:three_prime_UTR |
| TTATCTTCTCCCAGTCCAAT+TGG | 0.406365 | 5_1:-68489050 | None:intergenic |
| ACTAGTCTTGCACTTCTTCT+CGG | 0.408587 | 5_1:-68489425 | None:intergenic |
| GAAGGAGAAGGAGAAAGAAA+AGG | 0.425977 | 5_1:+68489890 | Msa0746380:CDS |
| GCAACAGCTAAAGGCTTTGC+TGG | 0.426278 | 5_1:+68489794 | Msa0746380:intron |
| GGCTGCAATTGAGTTCCAAT+TGG | 0.440475 | 5_1:+68489035 | Msa0746380:CDS |
| CCAGTTCCCTTAGCTCCCTT+AGG | 0.443209 | 5_1:-68489479 | None:intergenic |
| CCTAAGGGAGCTAAGGGAAC+TGG | 0.452525 | 5_1:+68489479 | Msa0746380:CDS |
| TGATCCTTTCACTCAAGAGC+TGG | 0.469300 | 5_1:+68488996 | Msa0746380:CDS |
| CAATTGAGTTCCAATTGGAC+TGG | 0.475135 | 5_1:+68489040 | Msa0746380:CDS |
| AATGACACCTGAGATGCTTA+AGG | 0.475276 | 5_1:+68489107 | Msa0746380:CDS |
| AGAAAAGGAAAAGTAGCAGC+AGG | 0.496648 | 5_1:+68489905 | Msa0746380:exon |
| CAGCTAAAGGCTTTGCTGGA+TGG | 0.497414 | 5_1:+68489798 | Msa0746380:intron |
| TGTCATTCCTAAGGGAGCTA+AGG | 0.498138 | 5_1:+68489472 | Msa0746380:CDS |
| AATTCCACTTCCCTTCTTGG+AGG | 0.503668 | 5_1:-68489450 | None:intergenic |
| CTATCTCCAACAAAGAAGTC+AGG | 0.503929 | 5_1:-68489647 | None:intergenic |
| TTATTTCTTAAGTTAATAGC+AGG | 0.504689 | 5_1:-68488931 | None:intergenic |
| GTCTCCTCCAAGAAGGGAAG+TGG | 0.505425 | 5_1:+68489389 | Msa0746380:CDS |
| AAGTGGAATTGTCATTCCTA+AGG | 0.512679 | 5_1:+68489463 | Msa0746380:CDS |
| AACTCCACTTCCCTTCTTGG+AGG | 0.521516 | 5_1:-68489393 | None:intergenic |
| AGTAAGACTCGGACAGATGA+TGG | 0.523165 | 5_1:+68489335 | Msa0746380:CDS |
| TCCTGGAATTACTAGAAAAG+AGG | 0.524734 | 5_1:+68489256 | Msa0746380:CDS |
| AGAGAAGAAGGAGAAGGAGA+AGG | 0.525181 | 5_1:+68489878 | Msa0746380:CDS |
| AGCTCCAGCTCTTGAGTGAA+AGG | 0.526439 | 5_1:-68489000 | None:intergenic |
| GTCATTCCTAAGGGAGCTAA+GGG | 0.530850 | 5_1:+68489473 | Msa0746380:CDS |
| GTTTCCTCCAAGAAGGGAAG+TGG | 0.532451 | 5_1:+68489446 | Msa0746380:CDS |
| TTTACAAGAGAAGAAGGAGA+AGG | 0.541855 | 5_1:+68489872 | Msa0746380:CDS |
| CTGGATGGTAACAAACTGAT+GGG | 0.543990 | 5_1:+68489813 | Msa0746380:CDS |
| AATTGAGTTCCAATTGGACT+GGG | 0.547012 | 5_1:+68489041 | Msa0746380:CDS |
| AAGAAATAAACCTGAAGATG+AGG | 0.549798 | 5_1:+68488945 | Msa0746380:CDS |
| AAGACTAGTTTCCTCCAAGA+AGG | 0.555321 | 5_1:+68489439 | Msa0746380:CDS |
| AAGACTAGTCTCCTCCAAGA+AGG | 0.566971 | 5_1:+68489382 | Msa0746380:CDS |
| GCTGGATGGTAACAAACTGA+TGG | 0.570365 | 5_1:+68489812 | Msa0746380:CDS |
| GCACCTGAAATTTCTGATGG+TGG | 0.596081 | 5_1:+68489281 | Msa0746380:CDS |
| AGACTAGTCTCCTCCAAGAA+GGG | 0.599363 | 5_1:+68489383 | Msa0746380:CDS |
| AAATAAACCTGAAGATGAGG+AGG | 0.600134 | 5_1:+68488948 | Msa0746380:CDS |
| AAGGAAAAGTAGCAGCAGGA+AGG | 0.607126 | 5_1:+68489909 | Msa0746380:exon |
| TTGTTGGAGATAGCTCCGCT+AGG | 0.613538 | 5_1:+68489657 | Msa0746380:CDS |
| ACAATTGCATTGACTGCACA+AGG | 0.614395 | 5_1:-68490094 | None:intergenic |
| GCTGGAGCTGCACCTTAGAG+AGG | 0.617395 | 5_1:+68489014 | Msa0746380:CDS |
| AGTGGAATTGTCATTCCTAA+GGG | 0.624122 | 5_1:+68489464 | Msa0746380:CDS |
| AGACTAGTTTCCTCCAAGAA+GGG | 0.626970 | 5_1:+68489440 | Msa0746380:CDS |
| ATATACATGCTATTAAGCGT+AGG | 0.640969 | 5_1:+68489575 | Msa0746380:CDS |
| GTTATTAGAATTATTCCTAG+CGG | 0.645148 | 5_1:-68489672 | None:intergenic |
| GTGACTCAAGCAGTAAGACT+CGG | 0.647491 | 5_1:+68489324 | Msa0746380:CDS |
| TGGATGGTAACAAACTGATG+GGG | 0.665765 | 5_1:+68489814 | Msa0746380:CDS |
| AAGGGAACTGGAGACAACAA+AGG | 0.668017 | 5_1:+68489491 | Msa0746380:CDS |
| GATGCACCTGAAATTTCTGA+TGG | 0.673308 | 5_1:+68489278 | Msa0746380:CDS |
| GGATGGTAACAAACTGATGG+GGG | 0.675199 | 5_1:+68489815 | Msa0746380:CDS |
| TTTGGTAAAACTGATGTGTG+TGG | 0.689711 | 5_1:+68490017 | Msa0746380:three_prime_UTR |
| TAACTCAGTTGATGACCCCG+TGG | 0.725768 | 5_1:+68489691 | Msa0746380:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ACTTAAGTATAATTTTATAC+AGG | + | chr5_1:68489180-68489199 | Msa0746380:intron | 15.0% |
| !! | AAAAAAATGACAATTTCATA+GGG | - | chr5_1:68489730-68489749 | None:intergenic | 15.0% |
| !!! | ACTTAAGTATAATTTTATAC+AGG | + | chr5_1:68489180-68489199 | Msa0746380:intron | 15.0% |
| !! | AAAAAAATGACAATTTCATA+GGG | - | chr5_1:68489730-68489749 | None:intergenic | 15.0% |
| !!! | TTATTTCTTAAGTTAATAGC+AGG | - | chr5_1:68488934-68488953 | None:intergenic | 20.0% |
| !! | ACAACATTATCTATTCATTA+AGG | - | chr5_1:68489150-68489169 | None:intergenic | 20.0% |
| !! | GAAAAAAATGACAATTTCAT+AGG | - | chr5_1:68489731-68489750 | None:intergenic | 20.0% |
| !! | CTTCTTGTTAAAATTTGATA+TGG | + | chr5_1:68489750-68489769 | Msa0746380:intron | 20.0% |
| !!! | TTATTTCTTAAGTTAATAGC+AGG | - | chr5_1:68488934-68488953 | None:intergenic | 20.0% |
| !! | ACAACATTATCTATTCATTA+AGG | - | chr5_1:68489150-68489169 | None:intergenic | 20.0% |
| !! | GAAAAAAATGACAATTTCAT+AGG | - | chr5_1:68489731-68489750 | None:intergenic | 20.0% |
| !! | CTTCTTGTTAAAATTTGATA+TGG | + | chr5_1:68489750-68489769 | Msa0746380:intron | 20.0% |
| ! | GTTATTAGAATTATTCCTAG+CGG | - | chr5_1:68489675-68489694 | None:intergenic | 25.0% |
| !!! | AGGGTATTTTTTTTTTACCA+CGG | - | chr5_1:68489711-68489730 | None:intergenic | 25.0% |
| !! | TGAAATTTTACAAGAGAAGA+AGG | + | chr5_1:68489866-68489885 | Msa0746380:CDS | 25.0% |
| ! | GTTATTAGAATTATTCCTAG+CGG | - | chr5_1:68489675-68489694 | None:intergenic | 25.0% |
| !!! | AGGGTATTTTTTTTTTACCA+CGG | - | chr5_1:68489711-68489730 | None:intergenic | 25.0% |
| !! | TGAAATTTTACAAGAGAAGA+AGG | + | chr5_1:68489866-68489885 | Msa0746380:CDS | 25.0% |
| AAGAAATAAACCTGAAGATG+AGG | + | chr5_1:68488945-68488964 | Msa0746380:CDS | 30.0% | |
| ! | TATTTTACCTTAAGCATCTC+AGG | - | chr5_1:68489117-68489136 | None:intergenic | 30.0% |
| TTACATTCACTCACTTGTTT+GGG | + | chr5_1:68489519-68489538 | Msa0746380:CDS | 30.0% | |
| ATATACATGCTATTAAGCGT+AGG | + | chr5_1:68489575-68489594 | Msa0746380:CDS | 30.0% | |
| ! | TTTACCATCTTGGCATTTTT+GGG | - | chr5_1:68489608-68489627 | None:intergenic | 30.0% |
| !!! | GGTATTTTTTTTTTACCACG+GGG | - | chr5_1:68489709-68489728 | None:intergenic | 30.0% |
| !!! | GGGTATTTTTTTTTTACCAC+GGG | - | chr5_1:68489710-68489729 | None:intergenic | 30.0% |
| !!! | TTTTTTGTTGCAACAGCTAA+AGG | + | chr5_1:68489785-68489804 | Msa0746380:intron | 30.0% |
| TCAACTTTACTGTTTCAATC+TGG | + | chr5_1:68489961-68489980 | Msa0746380:three_prime_UTR | 30.0% | |
| ! | CAAACTCTTCGTGATAATTT+TGG | + | chr5_1:68489999-68490018 | Msa0746380:three_prime_UTR | 30.0% |
| AAGAAATAAACCTGAAGATG+AGG | + | chr5_1:68488945-68488964 | Msa0746380:CDS | 30.0% | |
| ! | TATTTTACCTTAAGCATCTC+AGG | - | chr5_1:68489117-68489136 | None:intergenic | 30.0% |
| TTACATTCACTCACTTGTTT+GGG | + | chr5_1:68489519-68489538 | Msa0746380:CDS | 30.0% | |
| ATATACATGCTATTAAGCGT+AGG | + | chr5_1:68489575-68489594 | Msa0746380:CDS | 30.0% | |
| ! | TTTACCATCTTGGCATTTTT+GGG | - | chr5_1:68489608-68489627 | None:intergenic | 30.0% |
| !!! | GGTATTTTTTTTTTACCACG+GGG | - | chr5_1:68489709-68489728 | None:intergenic | 30.0% |
| !!! | GGGTATTTTTTTTTTACCAC+GGG | - | chr5_1:68489710-68489729 | None:intergenic | 30.0% |
| !!! | TTTTTTGTTGCAACAGCTAA+AGG | + | chr5_1:68489785-68489804 | Msa0746380:intron | 30.0% |
| TCAACTTTACTGTTTCAATC+TGG | + | chr5_1:68489961-68489980 | Msa0746380:three_prime_UTR | 30.0% | |
| ! | CAAACTCTTCGTGATAATTT+TGG | + | chr5_1:68489999-68490018 | Msa0746380:three_prime_UTR | 30.0% |
| AAATAAACCTGAAGATGAGG+AGG | + | chr5_1:68488948-68488967 | Msa0746380:CDS | 35.0% | |
| AATTGAGTTCCAATTGGACT+GGG | + | chr5_1:68489041-68489060 | Msa0746380:CDS | 35.0% | |
| ACAGGCTAAGTATATTGAGA+TGG | + | chr5_1:68489198-68489217 | Msa0746380:intron | 35.0% | |
| TCCTGGAATTACTAGAAAAG+AGG | + | chr5_1:68489256-68489275 | Msa0746380:CDS | 35.0% | |
| !! | TCCTCTTTTCTAGTAATTCC+AGG | - | chr5_1:68489260-68489279 | None:intergenic | 35.0% |
| AAGTGGAATTGTCATTCCTA+AGG | + | chr5_1:68489463-68489482 | Msa0746380:CDS | 35.0% | |
| AGTGGAATTGTCATTCCTAA+GGG | + | chr5_1:68489464-68489483 | Msa0746380:CDS | 35.0% | |
| CTTACATTCACTCACTTGTT+TGG | + | chr5_1:68489518-68489537 | Msa0746380:CDS | 35.0% | |
| ! | CTTTACCATCTTGGCATTTT+TGG | - | chr5_1:68489609-68489628 | None:intergenic | 35.0% |
| CAAAAATGCCAAGATGGTAA+AGG | + | chr5_1:68489607-68489626 | Msa0746380:CDS | 35.0% | |
| AATAAGCCTGACTTCTTTGT+TGG | + | chr5_1:68489641-68489660 | Msa0746380:CDS | 35.0% | |
| TTTACAAGAGAAGAAGGAGA+AGG | + | chr5_1:68489872-68489891 | Msa0746380:CDS | 35.0% | |
| TTTGGTAAAACTGATGTGTG+TGG | + | chr5_1:68490017-68490036 | Msa0746380:three_prime_UTR | 35.0% | |
| AAATAAACCTGAAGATGAGG+AGG | + | chr5_1:68488948-68488967 | Msa0746380:CDS | 35.0% | |
| AATTGAGTTCCAATTGGACT+GGG | + | chr5_1:68489041-68489060 | Msa0746380:CDS | 35.0% | |
| ACAGGCTAAGTATATTGAGA+TGG | + | chr5_1:68489198-68489217 | Msa0746380:intron | 35.0% | |
| TCCTGGAATTACTAGAAAAG+AGG | + | chr5_1:68489256-68489275 | Msa0746380:CDS | 35.0% | |
| !! | TCCTCTTTTCTAGTAATTCC+AGG | - | chr5_1:68489260-68489279 | None:intergenic | 35.0% |
| AAGTGGAATTGTCATTCCTA+AGG | + | chr5_1:68489463-68489482 | Msa0746380:CDS | 35.0% | |
| AGTGGAATTGTCATTCCTAA+GGG | + | chr5_1:68489464-68489483 | Msa0746380:CDS | 35.0% | |
| CTTACATTCACTCACTTGTT+TGG | + | chr5_1:68489518-68489537 | Msa0746380:CDS | 35.0% | |
| ! | CTTTACCATCTTGGCATTTT+TGG | - | chr5_1:68489609-68489628 | None:intergenic | 35.0% |
| CAAAAATGCCAAGATGGTAA+AGG | + | chr5_1:68489607-68489626 | Msa0746380:CDS | 35.0% | |
| AATAAGCCTGACTTCTTTGT+TGG | + | chr5_1:68489641-68489660 | Msa0746380:CDS | 35.0% | |
| TTTACAAGAGAAGAAGGAGA+AGG | + | chr5_1:68489872-68489891 | Msa0746380:CDS | 35.0% | |
| TTTGGTAAAACTGATGTGTG+TGG | + | chr5_1:68490017-68490036 | Msa0746380:three_prime_UTR | 35.0% | |
| CAATTGAGTTCCAATTGGAC+TGG | + | chr5_1:68489040-68489059 | Msa0746380:CDS | 40.0% | |
| TTATCTTCTCCCAGTCCAAT+TGG | - | chr5_1:68489053-68489072 | None:intergenic | 40.0% | |
| AATGACACCTGAGATGCTTA+AGG | + | chr5_1:68489107-68489126 | Msa0746380:CDS | 40.0% | |
| GACAAAAAGCAGTCAAATCC+TGG | + | chr5_1:68489239-68489258 | Msa0746380:intron | 40.0% | |
| GATGCACCTGAAATTTCTGA+TGG | + | chr5_1:68489278-68489297 | Msa0746380:CDS | 40.0% | |
| !! | ACTAGTCTTGCACTTCTTCT+CGG | - | chr5_1:68489371-68489390 | None:intergenic | 40.0% |
| !! | AAGACTAGTTTCCTCCAAGA+AGG | + | chr5_1:68489439-68489458 | Msa0746380:CDS | 40.0% |
| !! | AGACTAGTTTCCTCCAAGAA+GGG | + | chr5_1:68489440-68489459 | Msa0746380:CDS | 40.0% |
| GAATCCCAAAAATGCCAAGA+TGG | + | chr5_1:68489601-68489620 | Msa0746380:CDS | 40.0% | |
| CTATCTCCAACAAAGAAGTC+AGG | - | chr5_1:68489650-68489669 | None:intergenic | 40.0% | |
| CTGGATGGTAACAAACTGAT+GGG | + | chr5_1:68489813-68489832 | Msa0746380:CDS | 40.0% | |
| TGGATGGTAACAAACTGATG+GGG | + | chr5_1:68489814-68489833 | Msa0746380:CDS | 40.0% | |
| GAAGGAGAAGGAGAAAGAAA+AGG | + | chr5_1:68489890-68489909 | Msa0746380:CDS | 40.0% | |
| AGAAAAGGAAAAGTAGCAGC+AGG | + | chr5_1:68489905-68489924 | Msa0746380:exon | 40.0% | |
| !! | ACAATTGCATTGACTGCACA+AGG | - | chr5_1:68490097-68490116 | None:intergenic | 40.0% |
| CAATTGAGTTCCAATTGGAC+TGG | + | chr5_1:68489040-68489059 | Msa0746380:CDS | 40.0% | |
| TTATCTTCTCCCAGTCCAAT+TGG | - | chr5_1:68489053-68489072 | None:intergenic | 40.0% | |
| AATGACACCTGAGATGCTTA+AGG | + | chr5_1:68489107-68489126 | Msa0746380:CDS | 40.0% | |
| GACAAAAAGCAGTCAAATCC+TGG | + | chr5_1:68489239-68489258 | Msa0746380:intron | 40.0% | |
| GATGCACCTGAAATTTCTGA+TGG | + | chr5_1:68489278-68489297 | Msa0746380:CDS | 40.0% | |
| !! | ACTAGTCTTGCACTTCTTCT+CGG | - | chr5_1:68489371-68489390 | None:intergenic | 40.0% |
| !! | AAGACTAGTTTCCTCCAAGA+AGG | + | chr5_1:68489439-68489458 | Msa0746380:CDS | 40.0% |
| !! | AGACTAGTTTCCTCCAAGAA+GGG | + | chr5_1:68489440-68489459 | Msa0746380:CDS | 40.0% |
| GAATCCCAAAAATGCCAAGA+TGG | + | chr5_1:68489601-68489620 | Msa0746380:CDS | 40.0% | |
| CTATCTCCAACAAAGAAGTC+AGG | - | chr5_1:68489650-68489669 | None:intergenic | 40.0% | |
| CTGGATGGTAACAAACTGAT+GGG | + | chr5_1:68489813-68489832 | Msa0746380:CDS | 40.0% | |
| TGGATGGTAACAAACTGATG+GGG | + | chr5_1:68489814-68489833 | Msa0746380:CDS | 40.0% | |
| GAAGGAGAAGGAGAAAGAAA+AGG | + | chr5_1:68489890-68489909 | Msa0746380:CDS | 40.0% | |
| AGAAAAGGAAAAGTAGCAGC+AGG | + | chr5_1:68489905-68489924 | Msa0746380:exon | 40.0% | |
| !! | ACAATTGCATTGACTGCACA+AGG | - | chr5_1:68490097-68490116 | None:intergenic | 40.0% |
| TGATCCTTTCACTCAAGAGC+TGG | + | chr5_1:68488996-68489015 | Msa0746380:CDS | 45.0% | |
| ACTCAATTGCAGCCTCTCTA+AGG | - | chr5_1:68489029-68489048 | None:intergenic | 45.0% | |
| GGCTGCAATTGAGTTCCAAT+TGG | + | chr5_1:68489035-68489054 | Msa0746380:CDS | 45.0% | |
| GCACCTGAAATTTCTGATGG+TGG | + | chr5_1:68489281-68489300 | Msa0746380:CDS | 45.0% | |
| GAGCCACCATCAGAAATTTC+AGG | - | chr5_1:68489287-68489306 | None:intergenic | 45.0% | |
| GTGACTCAAGCAGTAAGACT+CGG | + | chr5_1:68489324-68489343 | Msa0746380:CDS | 45.0% | |
| AGTAAGACTCGGACAGATGA+TGG | + | chr5_1:68489335-68489354 | Msa0746380:CDS | 45.0% | |
| !! | AAGACTAGTCTCCTCCAAGA+AGG | + | chr5_1:68489382-68489401 | Msa0746380:CDS | 45.0% |
| !! | AGACTAGTCTCCTCCAAGAA+GGG | + | chr5_1:68489383-68489402 | Msa0746380:CDS | 45.0% |
| AATTCCACTTCCCTTCTTGG+AGG | - | chr5_1:68489453-68489472 | None:intergenic | 45.0% | |
| GACAATTCCACTTCCCTTCT+TGG | - | chr5_1:68489456-68489475 | None:intergenic | 45.0% | |
| TGTCATTCCTAAGGGAGCTA+AGG | + | chr5_1:68489472-68489491 | Msa0746380:CDS | 45.0% | |
| GTCATTCCTAAGGGAGCTAA+GGG | + | chr5_1:68489473-68489492 | Msa0746380:CDS | 45.0% | |
| AAGGGAACTGGAGACAACAA+AGG | + | chr5_1:68489491-68489510 | Msa0746380:CDS | 45.0% | |
| CTCAGACACCTTTACCATCT+TGG | - | chr5_1:68489618-68489637 | None:intergenic | 45.0% | |
| GCTGGATGGTAACAAACTGA+TGG | + | chr5_1:68489812-68489831 | Msa0746380:CDS | 45.0% | |
| GGATGGTAACAAACTGATGG+GGG | + | chr5_1:68489815-68489834 | Msa0746380:CDS | 45.0% | |
| AGAGAAGAAGGAGAAGGAGA+AGG | + | chr5_1:68489878-68489897 | Msa0746380:CDS | 45.0% | |
| AAGGAAAAGTAGCAGCAGGA+AGG | + | chr5_1:68489909-68489928 | Msa0746380:exon | 45.0% | |
| TGATCCTTTCACTCAAGAGC+TGG | + | chr5_1:68488996-68489015 | Msa0746380:CDS | 45.0% | |
| ACTCAATTGCAGCCTCTCTA+AGG | - | chr5_1:68489029-68489048 | None:intergenic | 45.0% | |
| GGCTGCAATTGAGTTCCAAT+TGG | + | chr5_1:68489035-68489054 | Msa0746380:CDS | 45.0% | |
| GCACCTGAAATTTCTGATGG+TGG | + | chr5_1:68489281-68489300 | Msa0746380:CDS | 45.0% | |
| GAGCCACCATCAGAAATTTC+AGG | - | chr5_1:68489287-68489306 | None:intergenic | 45.0% | |
| GTGACTCAAGCAGTAAGACT+CGG | + | chr5_1:68489324-68489343 | Msa0746380:CDS | 45.0% | |
| AGTAAGACTCGGACAGATGA+TGG | + | chr5_1:68489335-68489354 | Msa0746380:CDS | 45.0% | |
| !! | AAGACTAGTCTCCTCCAAGA+AGG | + | chr5_1:68489382-68489401 | Msa0746380:CDS | 45.0% |
| !! | AGACTAGTCTCCTCCAAGAA+GGG | + | chr5_1:68489383-68489402 | Msa0746380:CDS | 45.0% |
| AATTCCACTTCCCTTCTTGG+AGG | - | chr5_1:68489453-68489472 | None:intergenic | 45.0% | |
| GACAATTCCACTTCCCTTCT+TGG | - | chr5_1:68489456-68489475 | None:intergenic | 45.0% | |
| TGTCATTCCTAAGGGAGCTA+AGG | + | chr5_1:68489472-68489491 | Msa0746380:CDS | 45.0% | |
| GTCATTCCTAAGGGAGCTAA+GGG | + | chr5_1:68489473-68489492 | Msa0746380:CDS | 45.0% | |
| AAGGGAACTGGAGACAACAA+AGG | + | chr5_1:68489491-68489510 | Msa0746380:CDS | 45.0% | |
| CTCAGACACCTTTACCATCT+TGG | - | chr5_1:68489618-68489637 | None:intergenic | 45.0% | |
| GCTGGATGGTAACAAACTGA+TGG | + | chr5_1:68489812-68489831 | Msa0746380:CDS | 45.0% | |
| GGATGGTAACAAACTGATGG+GGG | + | chr5_1:68489815-68489834 | Msa0746380:CDS | 45.0% | |
| AGAGAAGAAGGAGAAGGAGA+AGG | + | chr5_1:68489878-68489897 | Msa0746380:CDS | 45.0% | |
| AAGGAAAAGTAGCAGCAGGA+AGG | + | chr5_1:68489909-68489928 | Msa0746380:exon | 45.0% | |
| AGCTCCAGCTCTTGAGTGAA+AGG | - | chr5_1:68489003-68489022 | None:intergenic | 50.0% | |
| AACTCCACTTCCCTTCTTGG+AGG | - | chr5_1:68489396-68489415 | None:intergenic | 50.0% | |
| GACAACTCCACTTCCCTTCT+TGG | - | chr5_1:68489399-68489418 | None:intergenic | 50.0% | |
| GTTTCCTCCAAGAAGGGAAG+TGG | + | chr5_1:68489446-68489465 | Msa0746380:CDS | 50.0% | |
| TTGTTGGAGATAGCTCCGCT+AGG | + | chr5_1:68489657-68489676 | Msa0746380:CDS | 50.0% | |
| !! | TAACTCAGTTGATGACCCCG+TGG | + | chr5_1:68489691-68489710 | Msa0746380:CDS | 50.0% |
| GCAACAGCTAAAGGCTTTGC+TGG | + | chr5_1:68489794-68489813 | Msa0746380:intron | 50.0% | |
| CAGCTAAAGGCTTTGCTGGA+TGG | + | chr5_1:68489798-68489817 | Msa0746380:intron | 50.0% | |
| AGCTCCAGCTCTTGAGTGAA+AGG | - | chr5_1:68489003-68489022 | None:intergenic | 50.0% | |
| AACTCCACTTCCCTTCTTGG+AGG | - | chr5_1:68489396-68489415 | None:intergenic | 50.0% | |
| GACAACTCCACTTCCCTTCT+TGG | - | chr5_1:68489399-68489418 | None:intergenic | 50.0% | |
| GTTTCCTCCAAGAAGGGAAG+TGG | + | chr5_1:68489446-68489465 | Msa0746380:CDS | 50.0% | |
| TTGTTGGAGATAGCTCCGCT+AGG | + | chr5_1:68489657-68489676 | Msa0746380:CDS | 50.0% | |
| !! | TAACTCAGTTGATGACCCCG+TGG | + | chr5_1:68489691-68489710 | Msa0746380:CDS | 50.0% |
| GCAACAGCTAAAGGCTTTGC+TGG | + | chr5_1:68489794-68489813 | Msa0746380:intron | 50.0% | |
| CAGCTAAAGGCTTTGCTGGA+TGG | + | chr5_1:68489798-68489817 | Msa0746380:intron | 50.0% | |
| GTCTCCTCCAAGAAGGGAAG+TGG | + | chr5_1:68489389-68489408 | Msa0746380:CDS | 55.0% | |
| CCAGTTCCCTTAGCTCCCTT+AGG | - | chr5_1:68489482-68489501 | None:intergenic | 55.0% | |
| CCTAAGGGAGCTAAGGGAAC+TGG | + | chr5_1:68489479-68489498 | Msa0746380:CDS | 55.0% | |
| GTCTCCTCCAAGAAGGGAAG+TGG | + | chr5_1:68489389-68489408 | Msa0746380:CDS | 55.0% | |
| CCAGTTCCCTTAGCTCCCTT+AGG | - | chr5_1:68489482-68489501 | None:intergenic | 55.0% | |
| CCTAAGGGAGCTAAGGGAAC+TGG | + | chr5_1:68489479-68489498 | Msa0746380:CDS | 55.0% | |
| CGCAGCTCCTCCTCATCTTC+AGG | - | chr5_1:68488958-68488977 | None:intergenic | 60.0% | |
| GCTGGAGCTGCACCTTAGAG+AGG | + | chr5_1:68489014-68489033 | Msa0746380:CDS | 60.0% | |
| CGCAGCTCCTCCTCATCTTC+AGG | - | chr5_1:68488958-68488977 | None:intergenic | 60.0% | |
| GCTGGAGCTGCACCTTAGAG+AGG | + | chr5_1:68489014-68489033 | Msa0746380:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 68488883 | 68490126 | 68488883 | ID=Msa0746380;Name=Msa0746380 |
| chr5_1 | mRNA | 68488883 | 68490126 | 68488883 | ID=Msa0746380-mRNA-1;Parent=Msa0746380;Name=Msa0746380-mRNA-1;_AED=0.25;_eAED=0.26;_QI=0|0.5|0.33|1|1|1|3|206|275 |
| chr5_1 | exon | 68488883 | 68489128 | 68488883 | ID=Msa0746380-mRNA-1:exon:20452;Parent=Msa0746380-mRNA-1 |
| chr5_1 | exon | 68489251 | 68489712 | 68489251 | ID=Msa0746380-mRNA-1:exon:20453;Parent=Msa0746380-mRNA-1 |
| chr5_1 | exon | 68489801 | 68490126 | 68489801 | ID=Msa0746380-mRNA-1:exon:20454;Parent=Msa0746380-mRNA-1 |
| chr5_1 | CDS | 68488883 | 68489128 | 68488883 | ID=Msa0746380-mRNA-1:cds;Parent=Msa0746380-mRNA-1 |
| chr5_1 | CDS | 68489251 | 68489712 | 68489251 | ID=Msa0746380-mRNA-1:cds;Parent=Msa0746380-mRNA-1 |
| chr5_1 | CDS | 68489801 | 68489920 | 68489801 | ID=Msa0746380-mRNA-1:cds;Parent=Msa0746380-mRNA-1 |
| chr5_1 | three_prime_UTR | 68489921 | 68490126 | 68489921 | ID=Msa0746380-mRNA-1:three_prime_utr;Parent=Msa0746380-mRNA-1 |
| Gene Sequence |
| Protein sequence |
