AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0748110

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0748110 MtrunA17_Chr7g0218831 93.409 440 29 0 1 440 1 440 0.0 857
Msa0748110 MtrunA17_Chr7g0218841 89.342 441 46 1 1 440 1 441 0.0 817
Msa0748110 MtrunA17_Chr7g0218811 71.818 440 122 2 1 439 11 449 0.0 661
Msa0748110 MtrunA17_Chr7g0218821 67.627 451 133 3 1 439 1 450 0.0 643
Msa0748110 MtrunA17_Chr7g0218791 57.432 444 177 4 5 439 4 444 0.0 536
Msa0748110 MtrunA17_Chr3g0078841 32.979 470 273 10 5 436 9 474 5.77e-78 250
Msa0748110 MtrunA17_Chr6g0454341 32.553 470 275 10 5 436 9 474 1.12e-74 241
Msa0748110 MtrunA17_Chr7g0217881 32.829 463 267 12 5 436 9 458 7.78e-73 236
Msa0748110 MtrunA17_Chr6g0454401 32.068 474 275 13 5 436 9 477 1.37e-72 236
Msa0748110 MtrunA17_Chr6g0454181 31.712 473 277 11 5 436 9 476 2.37e-72 235
Msa0748110 MtrunA17_Chr8g0336331 31.770 469 277 10 6 436 10 473 3.95e-71 232
Msa0748110 MtrunA17_Chr3g0118671 32.340 470 276 11 6 437 6 471 1.86e-70 230
Msa0748110 MtrunA17_Chr6g0454321 32.391 460 265 13 6 425 10 463 1.94e-70 234
Msa0748110 MtrunA17_Chr6g0453951 30.720 472 283 10 5 436 56 523 2.19e-70 231
Msa0748110 MtrunA17_Chr5g0448551 32.192 438 273 12 5 426 6 435 2.38e-70 229
Msa0748110 MtrunA17_Chr2g0278711 32.696 471 273 12 5 437 10 474 2.75e-70 230
Msa0748110 MtrunA17_Chr6g0454261 30.655 473 282 9 5 436 9 476 5.45e-70 229
Msa0748110 MtrunA17_Chr6g0454191 31.712 473 278 14 5 436 9 477 6.17e-70 229
Msa0748110 MtrunA17_Chr6g0454141 31.368 475 276 13 5 436 9 476 1.38e-69 228
Msa0748110 MtrunA17_Chr3g0118691 32.627 472 272 12 5 436 14 479 2.69e-69 228
Msa0748110 MtrunA17_Chr6g0453961 31.799 478 271 13 5 436 18 486 5.05e-69 227
Msa0748110 MtrunA17_Chr6g0454151 31.277 470 281 12 5 436 9 474 9.30e-69 226
Msa0748110 MtrunA17_Chr3g0118701 31.847 471 277 11 5 436 14 479 1.40e-68 226
Msa0748110 MtrunA17_Chr8g0359821 31.992 472 275 13 5 436 9 474 1.51e-68 225
Msa0748110 MtrunA17_Chr3g0118661 30.655 473 279 10 5 436 12 476 2.33e-68 225
Msa0748110 MtrunA17_Chr6g0454361 31.368 475 282 10 3 437 8 478 3.07e-68 224
Msa0748110 MtrunA17_Chr7g0249981 30.635 457 275 14 6 437 25 464 7.05e-68 224
Msa0748110 MtrunA17_Chr6g0454331 31.303 476 279 12 5 437 6 476 1.12e-67 223
Msa0748110 MtrunA17_Chr3g0118711 30.932 472 280 13 5 436 12 477 8.16e-67 221
Msa0748110 MtrunA17_Chr5g0426431 33.192 473 268 13 4 436 10 474 2.15e-66 219
Msa0748110 MtrunA17_Chr6g0464871 31.373 459 275 12 4 437 21 464 3.38e-66 219
Msa0748110 MtrunA17_Chr3g0118771 30.998 471 281 12 5 436 20 485 9.04e-66 218
Msa0748110 MtrunA17_Chr3g0092641 32.836 469 275 13 4 436 10 474 4.43e-65 216
Msa0748110 MtrunA17_Chr6g0454301 31.106 479 270 13 5 436 262 727 9.02e-65 221
Msa0748110 MtrunA17_Chr6g0454301 38.158 228 129 4 217 436 3 226 1.76e-43 162
Msa0748110 MtrunA17_Chr6g0454291 29.661 472 288 10 5 436 6 473 1.66e-64 215
Msa0748110 MtrunA17_Chr6g0454131 30.672 476 277 11 5 436 9 475 1.83e-64 215
Msa0748110 MtrunA17_Chr6g0454121 30.462 476 278 10 5 436 9 475 2.92e-64 214
Msa0748110 MtrunA17_Chr6g0454211 29.873 472 287 11 5 436 296 763 1.35e-63 218
Msa0748110 MtrunA17_Chr6g0454211 36.875 160 60 4 210 356 105 236 7.76e-23 101
Msa0748110 MtrunA17_Chr6g0464921 31.020 461 273 14 5 437 10 453 2.44e-63 211
Msa0748110 MtrunA17_Chr6g0452771 31.224 474 278 11 5 436 9 476 4.63e-63 211
Msa0748110 MtrunA17_Chr6g0464861 31.087 460 272 14 5 437 10 451 6.20e-63 210
Msa0748110 MtrunA17_Chr6g0454201 31.158 475 281 11 3 436 8 477 8.27e-63 210
Msa0748110 MtrunA17_Chr4g0053501 30.803 461 281 13 6 437 11 462 1.51e-62 210
Msa0748110 MtrunA17_Chr5g0423981 30.586 461 263 12 5 436 9 441 1.60e-62 209
Msa0748110 MtrunA17_Chr6g0464881 29.322 457 287 11 4 437 9 452 2.50e-62 208
Msa0748110 MtrunA17_Chr4g0053321 30.197 457 287 9 7 437 27 477 4.70e-62 209
Msa0748110 MtrunA17_Chr3g0118751 31.478 467 255 13 5 436 5 441 4.95e-61 205
Msa0748110 MtrunA17_Chr7g0250001 29.540 457 280 12 6 437 6 445 6.59e-61 205
Msa0748110 MtrunA17_Chr6g0464841 30.131 458 282 11 4 437 9 452 6.99e-61 204
Msa0748110 MtrunA17_Chr5g0414331 30.635 457 276 14 6 438 13 452 2.44e-60 203
Msa0748110 MtrunA17_Chr5g0412111 30.882 476 268 11 5 438 4 460 4.04e-60 203
Msa0748110 MtrunA17_Chr5g0414321 29.654 462 270 14 6 436 11 448 7.56e-60 202
Msa0748110 MtrunA17_Chr1g0207981 28.355 462 295 8 6 436 13 469 1.28e-59 202
Msa0748110 MtrunA17_Chr4g0050341 29.167 480 282 13 5 436 18 487 1.38e-58 199
Msa0748110 MtrunA17_Chr6g0454351 28.541 473 275 12 5 436 11 461 1.57e-58 199
Msa0748110 MtrunA17_Chr5g0412131 30.591 474 275 13 4 438 10 468 2.61e-58 198
Msa0748110 MtrunA17_Chr8g0380531 30.000 460 280 13 6 437 10 455 1.76e-56 193
Msa0748110 MtrunA17_Chr3g0112761 30.905 453 277 14 6 436 8 446 7.95e-56 191
Msa0748110 MtrunA17_Chr8g0377921 28.908 467 291 13 4 436 1 460 9.11e-55 189
Msa0748110 MtrunA17_Chr7g0249931 27.826 460 286 13 6 437 40 481 8.21e-54 187
Msa0748110 MtrunA17_Chr3g0112771 29.268 451 283 13 8 437 14 449 6.66e-53 184
Msa0748110 MtrunA17_Chr5g0412101 29.707 478 273 12 5 438 11 469 2.49e-52 182
Msa0748110 MtrunA17_Chr3g0121991 29.412 476 281 14 6 437 79 543 2.90e-52 184
Msa0748110 MtrunA17_Chr6g0454251 28.718 390 241 7 5 357 6 395 2.19e-51 178
Msa0748110 MtrunA17_Chr6g0454221 40.611 229 116 4 224 436 3 227 4.43e-50 172
Msa0748110 MtrunA17_Chr6g0454271 36.800 250 133 6 207 436 39 283 4.54e-50 171
Msa0748110 MtrunA17_Chr7g0243631 29.545 484 275 15 6 436 13 483 1.66e-49 175
Msa0748110 MtrunA17_Chr3g0098111 28.846 468 286 17 6 436 9 466 2.03e-49 175
Msa0748110 MtrunA17_Chr1g0161351 28.510 463 294 13 6 436 37 494 9.22e-49 173
Msa0748110 MtrunA17_Chr3g0122001 29.132 484 270 18 6 436 486 949 9.93e-49 178
Msa0748110 MtrunA17_Chr3g0122001 28.274 481 279 17 6 436 6 470 4.41e-46 171
Msa0748110 MtrunA17_Chr5g0401721 28.785 469 285 15 8 437 10 468 1.20e-48 172
Msa0748110 MtrunA17_Chr7g0243681 28.631 482 277 16 6 436 11 476 1.85e-48 172
Msa0748110 MtrunA17_Chr1g0207971 27.932 469 274 14 6 436 8 450 2.15e-48 171
Msa0748110 MtrunA17_Chr8g0377941 28.078 463 286 14 8 436 9 458 2.18e-48 172
Msa0748110 MtrunA17_Chr8g0336651 28.452 478 286 15 6 440 781 1245 1.59e-47 175
Msa0748110 MtrunA17_Chr8g0336651 26.875 480 287 15 6 440 6 466 2.24e-40 154
Msa0748110 MtrunA17_Chr8g0336651 32.443 262 148 6 191 440 532 776 3.55e-37 145
Msa0748110 MtrunA17_Chr7g0232411 26.931 479 282 14 6 437 6 463 3.46e-47 169
Msa0748110 MtrunA17_Chr5g0431441 28.478 460 285 13 6 436 18 462 4.38e-47 168
Msa0748110 MtrunA17_Chr8g0347281 28.205 468 277 18 5 432 17 465 4.49e-47 168
Msa0748110 MtrunA17_Chr8g0336691 28.184 479 284 13 6 440 13 475 5.27e-47 174
Msa0748110 MtrunA17_Chr8g0336691 28.059 474 291 13 6 440 919 1381 1.49e-44 166
Msa0748110 MtrunA17_Chr8g0336691 28.112 466 273 15 6 440 480 914 9.70e-41 155
Msa0748110 MtrunA17_Chr7g0243871 27.778 468 290 10 8 436 11 469 5.70e-47 168
Msa0748110 MtrunA17_Chr7g0275681 28.364 483 281 15 4 436 10 477 1.05e-46 167
Msa0748110 MtrunA17_Chr1g0207861 28.723 470 284 17 6 436 8 465 1.49e-46 167
Msa0748110 MtrunA17_Chr6g0459311 27.837 467 282 14 9 435 16 467 2.24e-46 166
Msa0748110 MtrunA17_Chr8g0347271 26.964 471 279 16 5 432 18 466 6.33e-46 165
Msa0748110 MtrunA17_Chr1g0207951 28.481 474 266 17 6 436 124 567 1.53e-45 169
Msa0748110 MtrunA17_Chr1g0207951 27.505 469 283 17 6 436 656 1105 1.25e-43 164
Msa0748110 MtrunA17_Chr1g0207931 26.797 459 252 14 6 436 92 494 2.20e-45 164
Msa0748110 MtrunA17_Chr7g0232331 27.494 451 282 12 1 417 1 440 2.28e-45 164
Msa0748110 MtrunA17_Chr8g0335161 28.889 450 270 14 6 418 6 442 3.06e-45 163
Msa0748110 MtrunA17_Chr7g0232391 27.004 474 295 14 6 440 6 467 3.81e-45 163
Msa0748110 MtrunA17_Chr7g0232401 27.930 401 252 12 61 435 74 463 4.69e-45 163
Msa0748110 MtrunA17_Chr4g0032331 29.327 416 251 14 6 392 8 409 1.40e-44 161
Msa0748110 MtrunA17_Chr7g0275511 25.738 474 304 13 5 440 14 477 1.43e-44 162
Msa0748110 MtrunA17_Chr8g0365811 28.326 466 289 14 8 436 497 954 2.99e-44 165
Msa0748110 MtrunA17_Chr8g0365811 28.406 433 256 16 6 396 9 429 1.55e-42 160
Msa0748110 MtrunA17_Chr7g0243931 27.766 479 290 14 6 436 17 487 6.36e-44 160
Msa0748110 MtrunA17_Chr1g0153451 27.027 481 284 13 6 440 6 465 1.20e-43 159
Msa0748110 MtrunA17_Chr4g0060511 27.530 494 275 17 6 436 11 484 2.11e-43 159
Msa0748110 MtrunA17_Chr1g0207831 28.419 468 281 18 7 436 9 460 2.46e-43 158
Msa0748110 MtrunA17_Chr6g0454171 36.777 242 115 6 210 436 88 306 2.90e-43 154
Msa0748110 MtrunA17_Chr8g0336741 27.195 467 273 13 6 430 13 454 1.13e-42 156
Msa0748110 MtrunA17_Chr7g0232311 26.316 475 296 14 5 440 5 464 1.79e-42 155
Msa0748110 MtrunA17_Chr7g0249961 35.931 231 129 5 222 437 31 257 3.49e-42 150
Msa0748110 MtrunA17_Chr7g0232341 26.362 459 277 11 1 417 1 440 4.25e-42 155
Msa0748110 MtrunA17_Chr5g0393591 26.201 458 275 13 3 436 14 432 4.51e-42 154
Msa0748110 MtrunA17_Chr6g0462521 37.500 216 120 5 223 428 229 439 7.44e-42 154
Msa0748110 MtrunA17_Chr6g0486251 27.719 469 280 17 9 435 9 460 8.10e-42 154
Msa0748110 MtrunA17_Chr6g0486201 27.719 469 280 17 9 435 9 460 8.10e-42 154
Msa0748110 MtrunA17_Chr7g0243771 27.557 479 287 18 6 436 6 472 8.49e-42 154
Msa0748110 MtrunA17_Chr3g0118721 37.255 204 117 4 240 436 87 286 1.21e-41 149
Msa0748110 MtrunA17_Chr7g0243951 27.917 480 287 16 6 436 11 480 1.29e-41 154
Msa0748110 MtrunA17_Chr4g0044521 27.039 466 284 15 11 436 14 463 3.98e-41 152
Msa0748110 MtrunA17_Chr8g0373301 26.700 397 257 12 68 435 71 462 5.91e-41 152
Msa0748110 MtrunA17_Chr5g0426401 36.207 232 140 4 211 436 78 307 7.90e-41 147
Msa0748110 MtrunA17_Chr8g0335141 27.195 467 298 14 5 437 8 466 8.59e-41 151
Msa0748110 MtrunA17_Chr8g0334851 26.013 469 295 14 1 428 1 458 1.14e-40 151
Msa0748110 MtrunA17_Chr7g0243861 27.329 483 287 16 6 436 14 484 1.35e-40 151
Msa0748110 MtrunA17_Chr7g0243781 27.824 478 276 17 10 436 13 472 1.38e-40 151
Msa0748110 MtrunA17_Chr4g0044511 26.850 473 293 16 6 436 40 501 2.38e-40 150
Msa0748110 MtrunA17_Chr8g0339461 29.558 362 219 11 106 435 110 467 5.14e-40 149
Msa0748110 MtrunA17_Chr8g0334861 30.303 396 224 14 77 437 83 461 9.88e-40 148
Msa0748110 MtrunA17_Chr6g0462531 36.937 222 125 5 224 435 244 460 1.15e-39 148
Msa0748110 MtrunA17_Chr7g0265141 27.846 492 276 19 6 436 9 482 1.18e-39 148
Msa0748110 MtrunA17_Chr6g0462571 26.531 392 242 11 80 435 76 457 1.45e-39 148
Msa0748110 MtrunA17_Chr7g0265041 26.694 487 293 14 4 436 9 485 1.48e-39 148
Msa0748110 MtrunA17_Chr6g0449931 26.124 467 293 15 6 432 6 460 1.64e-39 148
Msa0748110 MtrunA17_Chr7g0243761 27.848 474 266 15 6 436 11 451 1.77e-39 147
Msa0748110 MtrunA17_Chr8g0339451 27.877 391 245 12 77 435 74 459 1.84e-39 147
Msa0748110 MtrunA17_Chr7g0243801 27.004 474 288 17 10 436 11 473 3.40e-39 147
Msa0748110 MtrunA17_Chr6g0462541 27.989 368 222 10 97 435 106 459 4.29e-39 147
Msa0748110 MtrunA17_Chr8g0336731 26.509 464 276 14 8 430 34 473 6.40e-39 146
Msa0748110 MtrunA17_Chr5g0419761 28.230 418 244 13 6 381 9 412 1.23e-38 145
Msa0748110 MtrunA17_Chr6g0462551 25.161 465 303 12 7 435 5 460 2.85e-38 144
Msa0748110 MtrunA17_Chr3g0106231 25.813 461 288 14 3 436 15 448 4.42e-38 144
Msa0748110 MtrunA17_Chr8g0339441 29.971 347 182 13 129 435 100 425 1.01e-37 142
Msa0748110 MtrunA17_Chr7g0265101 26.489 487 290 16 6 436 9 483 1.02e-37 143
Msa0748110 MtrunA17_Chr7g0235051 27.273 473 261 18 6 432 11 446 1.16e-37 142
Msa0748110 MtrunA17_Chr5g0403641 26.724 464 251 18 6 421 59 481 1.68e-37 143
Msa0748110 MtrunA17_Chr7g0265151 25.567 485 294 18 6 436 9 480 2.42e-37 142
Msa0748110 MtrunA17_Chr5g0431361 26.134 463 288 16 6 437 12 451 4.77e-37 140
Msa0748110 MtrunA17_Chr7g0265051 25.462 487 293 16 6 436 9 481 7.06e-37 141
Msa0748110 MtrunA17_Chr2g0307961 24.138 464 304 10 5 433 12 462 1.34e-36 139
Msa0748110 MtrunA17_Chr8g0339631 27.970 404 248 14 68 435 68 464 3.22e-36 139
Msa0748110 MtrunA17_Chr8g0366391 28.392 479 282 16 6 436 9 474 5.57e-36 138
Msa0748110 MtrunA17_Chr2g0329111 24.477 478 309 14 8 439 8 479 6.63e-36 138
Msa0748110 MtrunA17_Chr4g0066221 27.366 486 277 17 6 436 13 477 8.91e-36 137
Msa0748110 MtrunA17_Chr5g0448521 24.364 472 300 14 10 438 9 466 1.10e-35 137
Msa0748110 MtrunA17_Chr5g0431371 26.039 457 293 13 6 437 10 446 1.22e-35 137
Msa0748110 MtrunA17_Chr4g0011051 25.410 488 295 16 6 436 9 484 1.23e-35 137
Msa0748110 MtrunA17_Chr5g0429711 27.214 463 290 15 6 436 11 458 1.58e-35 137
Msa0748110 MtrunA17_Chr8g0361371 25.499 451 273 15 9 416 10 440 2.46e-35 136
Msa0748110 MtrunA17_Chr8g0339601 39.594 197 98 7 229 405 99 294 2.90e-35 133
Msa0748110 MtrunA17_Chr1g0153461 34.906 212 118 6 249 440 3 214 3.08e-35 130
Msa0748110 MtrunA17_Chr4g0066281 26.261 476 280 12 7 436 13 463 4.86e-35 135
Msa0748110 MtrunA17_Chr5g0440421 25.358 489 301 18 5 436 9 490 1.47e-34 134
Msa0748110 MtrunA17_Chr8g0355011 27.168 346 204 7 106 436 46 358 1.98e-34 132
Msa0748110 MtrunA17_Chr5g0431421 25.541 462 289 14 6 437 10 446 2.58e-34 133
Msa0748110 MtrunA17_Chr6g0463891 25.052 479 298 16 8 436 14 481 1.44e-33 131
Msa0748110 MtrunA17_Chr5g0442491 22.785 474 312 12 10 438 9 473 1.62e-33 131
Msa0748110 MtrunA17_Chr4g0044501 26.652 469 300 16 6 436 10 472 2.32e-33 131
Msa0748110 MtrunA17_Chr5g0431401 25.108 462 291 14 6 437 10 446 2.43e-33 130
Msa0748110 MtrunA17_Chr4g0044481 26.733 404 233 13 6 379 27 397 3.59e-33 129
Msa0748110 MtrunA17_Chr8g0334831 24.615 455 280 14 9 416 9 447 3.68e-33 130
Msa0748110 MtrunA17_Chr6g0454371 36.257 171 99 3 272 436 1 167 5.83e-33 122
Msa0748110 MtrunA17_Chr4g0066261 25.625 480 294 16 6 436 13 478 7.10e-33 129
Msa0748110 MtrunA17_Chr8g0382021 24.473 474 285 13 11 437 39 486 7.30e-33 129
Msa0748110 MtrunA17_Chr4g0072771 26.049 453 298 16 6 436 25 462 7.84e-33 129
Msa0748110 MtrunA17_Chr1g0159551 23.810 462 294 14 11 437 19 457 7.94e-33 129
Msa0748110 MtrunA17_Chr4g0066201 27.706 462 287 16 10 436 22 471 2.45e-32 128
Msa0748110 MtrunA17_Chr1g0179901 24.390 492 294 17 6 436 16 490 3.17e-32 128
Msa0748110 MtrunA17_Chr3g0079731 33.191 235 134 7 224 436 244 477 4.99e-32 127
Msa0748110 MtrunA17_Chr4g0066171 27.195 467 282 16 10 436 25 473 1.54e-31 125
Msa0748110 MtrunA17_Chr8g0374931 25.157 477 300 15 6 436 13 478 2.71e-31 125
Msa0748110 MtrunA17_Chr4g0066131 25.104 482 283 17 10 438 17 473 3.03e-31 125
Msa0748110 MtrunA17_Chr4g0066151 25.314 478 283 17 10 436 22 476 5.79e-31 124
Msa0748110 MtrunA17_Chr7g0243711 33.010 206 119 5 250 436 108 313 6.72e-31 121
Msa0748110 MtrunA17_Chr5g0428081 26.205 477 293 19 6 436 13 476 8.54e-31 124
Msa0748110 MtrunA17_Chr1g0173121 31.687 243 126 5 223 437 230 460 8.56e-31 123
Msa0748110 MtrunA17_Chr8g0336261 40.426 141 76 3 272 408 1 137 1.05e-30 115
Msa0748110 MtrunA17_Chr4g0014061 24.307 469 307 12 9 438 12 471 1.23e-30 123
Msa0748110 MtrunA17_Chr5g0442601 23.285 481 307 16 8 438 406 874 2.03e-30 124
Msa0748110 MtrunA17_Chr5g0442601 32.164 171 93 5 228 376 166 335 3.55e-20 93.6
Msa0748110 MtrunA17_Chr5g0429681 25.745 470 293 16 7 437 45 497 2.84e-30 122
Msa0748110 MtrunA17_Chr5g0442541 23.241 469 307 13 10 438 9 464 4.10e-30 121
Msa0748110 MtrunA17_Chr7g0241781 26.620 432 263 15 6 418 9 405 4.14e-30 121
Msa0748110 MtrunA17_Chr5g0419771 31.224 237 134 5 229 436 273 509 4.43e-30 122
Msa0748110 MtrunA17_Chr5g0401851 23.918 485 297 18 8 436 12 480 4.44e-30 122
Msa0748110 MtrunA17_Chr3g0106251 28.521 284 167 6 172 436 24 290 7.56e-30 118
Msa0748110 MtrunA17_Chr2g0294931 24.576 472 303 12 10 436 15 478 7.61e-30 121
Msa0748110 MtrunA17_Chr5g0442561 22.505 471 315 16 10 438 9 471 1.25e-29 120
Msa0748110 MtrunA17_Chr5g0442581 22.996 474 313 13 10 438 9 475 1.27e-29 120
Msa0748110 MtrunA17_Chr7g0243811 26.277 411 244 14 18 392 1 388 1.51e-29 119
Msa0748110 MtrunA17_Chr5g0410941 24.101 473 306 14 6 436 25 486 1.55e-29 120
Msa0748110 MtrunA17_Chr5g0432731 28.571 273 161 6 188 437 33 294 1.56e-29 117
Msa0748110 MtrunA17_Chr7g0243911 33.862 189 109 4 245 417 17 205 1.58e-29 114
Msa0748110 MtrunA17_Chr5g0416741 24.742 485 290 18 8 436 15 480 2.07e-29 120
Msa0748110 MtrunA17_Chr4g0072761 25.721 451 303 16 4 436 13 449 2.25e-29 119
Msa0748110 MtrunA17_Chr2g0294921 24.528 477 303 14 6 436 162 627 2.27e-29 120
Msa0748110 MtrunA17_Chr7g0250021 28.571 336 200 11 6 319 12 329 2.91e-29 117
Msa0748110 MtrunA17_Chr8g0374901 24.686 478 293 14 9 436 15 475 3.65e-29 119
Msa0748110 MtrunA17_Chr8g0370941 25.000 460 260 16 6 402 8 445 4.07e-29 119
Msa0748110 MtrunA17_Chr5g0442521 21.730 474 318 14 10 438 9 474 6.51e-29 118
Msa0748110 MtrunA17_Chr8g0361411 23.629 474 296 15 6 440 8 454 8.15e-29 117
Msa0748110 MtrunA17_Chr7g0265111 30.962 239 134 6 229 436 274 512 8.50e-29 118
Msa0748110 MtrunA17_Chr8g0374971 24.583 480 297 14 7 436 13 477 9.63e-29 118
Msa0748110 MtrunA17_Chr8g0369341 26.395 466 301 17 6 436 7 465 1.03e-28 117
Msa0748110 MtrunA17_Chr5g0420801 25.862 464 296 18 6 436 7 455 1.35e-28 117
Msa0748110 MtrunA17_Chr7g0243611 33.498 203 113 6 197 379 71 271 1.94e-28 114
Msa0748110 MtrunA17_Chr6g0463861 25.833 480 285 19 6 436 13 470 2.19e-28 117
Msa0748110 MtrunA17_Chr4g0029131 26.107 429 269 15 6 406 12 420 2.75e-28 117
Msa0748110 MtrunA17_Chr2g0294941 30.120 249 144 7 209 434 123 364 3.65e-28 114
Msa0748110 MtrunA17_Chr7g0243851 32.227 211 124 5 245 436 229 439 6.75e-28 115
Msa0748110 MtrunA17_Chr7g0241801 25.231 432 269 17 6 418 9 405 1.00e-27 114
Msa0748110 MtrunA17_Chr7g0218311 30.702 228 134 6 233 436 253 480 1.05e-27 115
Msa0748110 MtrunA17_Chr1g0196851 24.368 435 272 18 6 406 49 460 1.22e-27 115
Msa0748110 MtrunA17_Chr8g0336251 25.000 456 274 14 6 416 7 439 3.99e-27 113
Msa0748110 MtrunA17_Chr5g0442511 21.519 474 297 16 8 438 51 492 4.03e-27 113
Msa0748110 MtrunA17_Chr1g0165701 24.895 478 296 20 8 436 17 480 4.36e-27 113
Msa0748110 MtrunA17_Chr8g0355221 23.591 479 304 15 8 436 17 483 5.13e-27 113
Msa0748110 MtrunA17_Chr8g0336321 25.000 456 274 14 6 416 7 439 1.04e-26 112
Msa0748110 MtrunA17_Chr8g0367221 25.107 466 305 17 6 438 12 466 1.08e-26 113
Msa0748110 MtrunA17_Chr8g0367221 24.222 450 285 15 6 417 798 1229 2.49e-25 109
Msa0748110 MtrunA17_Chr8g0367221 26.107 429 281 16 6 406 1288 1708 9.73e-24 104
Msa0748110 MtrunA17_Chr4g0029151 25.581 430 270 16 6 406 20 428 2.07e-26 110
Msa0748110 MtrunA17_Chr5g0409591 31.771 192 110 5 236 408 263 452 4.28e-26 110
Msa0748110 MtrunA17_Chr7g0232351 26.010 396 225 14 6 356 6 378 1.75e-25 107
Msa0748110 MtrunA17_Chr8g0374941 30.374 214 122 7 249 436 1202 1414 2.24e-25 109
Msa0748110 MtrunA17_Chr8g0374941 30.288 208 116 6 249 434 264 464 2.97e-25 109
Msa0748110 MtrunA17_Chr8g0374941 25.167 449 265 16 9 406 479 907 2.78e-24 106
Msa0748110 MtrunA17_Chr8g0350881 31.776 214 121 5 249 437 265 478 3.39e-25 107
Msa0748110 MtrunA17_Chr4g0040711 32.020 203 123 5 228 420 242 439 7.36e-25 106
Msa0748110 MtrunA17_Chr4g0040691 24.835 455 279 17 6 420 8 439 3.12e-24 104
Msa0748110 MtrunA17_Chr6g0454231 28.761 226 116 5 217 436 29 215 7.96e-24 103
Msa0748110 MtrunA17_Chr6g0454231 27.673 159 106 3 5 154 249 407 7.31e-14 73.2
Msa0748110 MtrunA17_Chr6g0463851 22.661 481 308 14 6 436 13 479 1.01e-23 103
Msa0748110 MtrunA17_Chr2g0302991 23.958 384 224 11 98 436 99 459 3.23e-23 101
Msa0748110 MtrunA17_Chr3g0079711 30.435 184 106 6 275 436 2 185 6.97e-23 95.5
Msa0748110 MtrunA17_Chr2g0283041 32.716 162 103 4 250 405 256 417 4.89e-22 98.2
Msa0748110 MtrunA17_Chr4g0042931 23.602 483 297 16 6 440 7 465 5.97e-22 97.8
Msa0748110 MtrunA17_Chr1g0207881 35.714 126 76 3 316 436 256 381 1.11e-21 96.3
Msa0748110 MtrunA17_Chr2g0302961 26.641 259 154 8 208 436 210 462 5.77e-21 95.1
Msa0748110 MtrunA17_Chr6g0466841 23.641 423 289 13 6 406 18 428 7.28e-21 94.7
Msa0748110 MtrunA17_Chr2g0278721 37.037 162 90 5 252 406 785 941 1.02e-20 95.5
Msa0748110 MtrunA17_Chr2g0278721 30.380 158 106 3 252 406 274 430 3.23e-16 81.3
Msa0748110 MtrunA17_Chr2g0319761 26.136 440 271 16 1 406 1 420 5.77e-20 92.0
Msa0748110 MtrunA17_Chr3g0092031 32.278 158 103 3 252 406 6 162 7.92e-20 87.4
Msa0748110 MtrunA17_Chr6g0466831 22.912 419 297 10 6 406 18 428 8.90e-20 91.3
Msa0748110 MtrunA17_Chr6g0453981 31.132 212 110 7 115 297 1 205 1.04e-19 87.8
Msa0748110 MtrunA17_Chr4g0069611 29.956 227 141 8 204 416 212 434 1.19e-19 90.9
Msa0748110 MtrunA17_Chr8g0337381 34.146 123 79 2 318 438 3 125 2.11e-19 84.3
Msa0748110 MtrunA17_Chr5g0427571 26.829 246 145 8 198 416 36 273 2.63e-19 88.2
Msa0748110 MtrunA17_Chr8g0357361 35.821 134 82 2 249 379 117 249 4.78e-19 86.7
Msa0748110 MtrunA17_Chr2g0302851 24.000 425 285 14 6 406 16 426 6.92e-19 88.6
Msa0748110 MtrunA17_Chr4g0042891 27.234 235 147 5 224 440 239 467 9.65e-19 88.2
Msa0748110 MtrunA17_Chr5g0416821 22.680 485 289 19 8 436 16 470 1.10e-18 88.2
Msa0748110 MtrunA17_Chr5g0431431 29.204 226 144 4 159 374 105 324 2.82e-18 85.9
Msa0748110 MtrunA17_Chr5g0426411 30.303 165 105 4 5 160 11 174 7.35e-18 80.9
Msa0748110 MtrunA17_Chr4g0029161 24.706 425 252 16 6 406 12 392 8.50e-18 85.1
Msa0748110 MtrunA17_Chr6g0464091 32.653 196 102 8 252 434 279 457 1.42e-17 84.7
Msa0748110 MtrunA17_Chr2g0278741 31.250 160 102 3 252 406 356 512 5.15e-17 83.2
Msa0748110 MtrunA17_Chr2g0319791 24.138 464 278 18 6 423 8 443 5.35e-17 82.8
Msa0748110 MtrunA17_Chr4g0039881 31.013 158 105 3 252 406 246 402 5.54e-17 82.8
Msa0748110 MtrunA17_Chr2g0319731 23.908 435 275 14 6 406 25 437 1.04e-16 82.0
Msa0748110 MtrunA17_Chr6g0454281 29.448 163 103 3 5 155 9 171 1.43e-15 75.5
Msa0748110 MtrunA17_Chr2g0319751 32.086 187 114 7 250 423 734 920 2.30e-15 78.6
Msa0748110 MtrunA17_Chr6g0482061 25.461 271 170 8 184 436 220 476 3.18e-15 77.8
Msa0748110 MtrunA17_Chr7g0231631 27.000 200 131 6 246 436 63 256 4.91e-15 75.1
Msa0748110 MtrunA17_Chr2g0319801 23.095 433 281 15 6 406 8 420 7.52e-15 76.3
Msa0748110 MtrunA17_Chr8g0336271 27.389 157 106 2 6 154 10 166 1.19e-14 73.9
Msa0748110 MtrunA17_Chr4g0066141 31.884 138 78 4 315 437 213 349 1.75e-14 74.7
Msa0748110 MtrunA17_Chr7g0243731 40.000 75 44 1 315 388 6 80 2.67e-14 68.2
Msa0748110 MtrunA17_Chr6g0453941 35.000 120 64 2 192 297 139 258 1.03e-13 71.2
Msa0748110 MtrunA17_Chr2g0321331 30.719 153 83 6 260 406 94 229 9.02e-13 68.6
Msa0748110 MtrunA17_Chr6g0454111 38.824 85 50 1 210 292 99 183 7.12e-12 64.3
Msa0748110 MtrunA17_Chr8g0334841 34.127 126 73 3 189 307 22 144 7.28e-12 63.9
Msa0748110 MtrunA17_Chr6g0454391 42.029 69 36 1 331 399 11 75 8.31e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0748110 AT3G02100.1 41.758 455 236 8 5 438 12 458 1.31e-123 367
Msa0748110 AT1G05675.1 31.947 457 274 11 6 437 6 450 2.34e-71 232
Msa0748110 AT1G05680.1 32.826 460 266 12 6 437 6 450 5.55e-70 229
Msa0748110 AT1G22370.2 32.930 413 246 9 2 384 9 420 2.80e-67 222
Msa0748110 AT1G22360.1 32.222 450 257 11 6 416 10 450 6.69e-67 221
Msa0748110 AT1G22400.1 32.287 446 253 12 5 410 12 448 1.10e-65 218
Msa0748110 AT1G22360.2 32.488 434 249 10 6 400 10 438 1.57e-65 218
Msa0748110 AT3G22250.1 30.022 453 265 12 5 421 7 443 2.05e-64 214
Msa0748110 AT1G22340.1 30.608 477 276 15 5 436 12 478 3.49e-63 212
Msa0748110 AT3G46670.1 30.110 455 276 12 8 438 11 447 5.89e-63 210
Msa0748110 AT1G78270.1 31.681 464 265 13 5 428 12 463 1.64e-62 210
Msa0748110 AT1G22380.1 31.461 445 257 11 5 410 12 447 2.11e-62 210
Msa0748110 AT3G21560.1 29.149 470 284 13 5 436 11 469 2.87e-62 209
Msa0748110 AT3G46660.1 29.018 448 292 12 8 438 16 454 2.32e-60 204
Msa0748110 AT3G55710.1 32.104 461 268 16 6 437 8 452 1.69e-57 196
Msa0748110 AT5G59590.1 28.571 448 292 11 6 436 10 446 3.95e-57 195
Msa0748110 AT2G31750.1 29.412 459 279 10 8 437 10 452 9.83e-57 194
Msa0748110 AT2G31750.2 29.412 459 279 10 8 437 10 452 2.43e-56 194
Msa0748110 AT5G59580.1 29.004 462 281 15 1 436 4 444 2.88e-55 190
Msa0748110 AT3G55700.1 31.510 457 272 18 6 437 8 448 3.61e-55 190
Msa0748110 AT2G43840.2 29.130 460 276 15 6 437 7 444 5.72e-55 189
Msa0748110 AT3G11340.1 29.605 456 279 12 5 438 8 443 9.52e-55 188
Msa0748110 AT2G43840.1 29.130 460 276 15 6 437 7 444 2.69e-54 187
Msa0748110 AT4G15490.1 28.326 466 289 16 6 436 8 463 4.99e-54 187
Msa0748110 AT2G23260.1 27.655 452 297 9 6 437 10 451 9.76e-54 186
Msa0748110 AT4G15500.1 27.778 468 288 16 4 436 7 459 5.35e-53 184
Msa0748110 AT2G23250.1 29.821 446 271 15 15 437 7 433 1.57e-52 182
Msa0748110 AT3G46720.1 28.475 446 291 11 6 438 9 439 3.73e-52 182
Msa0748110 AT3G46680.1 29.268 451 288 14 6 437 9 447 3.97e-52 182
Msa0748110 AT4G15550.1 26.737 475 289 15 5 436 12 470 5.60e-52 182
Msa0748110 AT2G43820.1 29.412 459 276 14 6 437 7 444 1.43e-51 180
Msa0748110 AT1G05560.1 28.976 459 285 15 5 436 4 448 2.28e-51 180
Msa0748110 AT4G15480.1 28.785 469 284 17 6 436 19 475 2.62e-51 180
Msa0748110 AT5G38010.1 28.634 454 288 15 6 436 10 450 3.88e-51 179
Msa0748110 AT1G05560.2 28.976 459 285 15 5 436 54 498 5.89e-51 180
Msa0748110 AT2G31790.1 28.009 457 294 11 6 437 8 454 7.87e-51 178
Msa0748110 AT3G46690.1 27.815 453 298 12 6 440 9 450 6.28e-50 176
Msa0748110 AT3G46650.1 28.507 442 281 13 6 435 10 428 1.14e-49 175
Msa0748110 AT5G05880.1 27.632 456 287 12 8 438 10 447 1.24e-49 175
Msa0748110 AT5G05900.1 28.540 459 278 13 8 438 10 446 2.85e-49 174
Msa0748110 AT5G38040.1 27.313 454 274 15 14 436 18 446 1.05e-48 172
Msa0748110 AT5G05870.1 29.130 460 277 17 8 436 10 451 1.88e-48 172
Msa0748110 AT3G46700.1 26.846 447 297 11 6 436 9 441 4.05e-48 171
Msa0748110 AT5G05860.1 28.913 460 272 16 6 435 9 443 4.08e-48 171
Msa0748110 AT4G14090.1 26.608 451 302 14 5 436 12 452 1.93e-47 169
Msa0748110 AT1G01420.1 28.511 470 287 15 2 434 4 461 2.57e-46 167
Msa0748110 AT1G01420.2 28.511 470 287 15 2 434 7 464 2.98e-46 167
Msa0748110 AT2G15490.1 29.615 493 271 18 6 440 7 481 3.62e-46 166
Msa0748110 AT2G15490.3 29.652 489 273 18 6 440 7 478 5.33e-46 166
Msa0748110 AT2G15480.1 28.279 488 281 15 6 440 10 481 8.12e-46 166
Msa0748110 AT4G01070.1 27.876 452 271 13 5 417 7 442 1.49e-45 165
Msa0748110 AT2G26480.1 27.293 447 282 13 8 431 10 436 6.72e-45 162
Msa0748110 AT2G36970.1 27.579 475 287 13 5 437 9 468 1.84e-44 162
Msa0748110 AT1G05530.1 27.115 461 294 15 5 436 4 451 2.13e-44 161
Msa0748110 AT2G36800.1 28.512 484 274 20 6 432 12 480 3.57e-44 161
Msa0748110 AT2G15480.2 27.711 498 281 16 6 440 10 491 1.32e-43 160
Msa0748110 AT5G05890.1 27.137 468 286 15 6 440 8 453 1.46e-43 159
Msa0748110 AT2G36770.1 26.025 488 288 18 6 436 14 485 6.19e-43 158
Msa0748110 AT3G53160.1 27.515 487 282 17 6 436 8 479 6.61e-43 157
Msa0748110 AT1G22370.1 38.889 216 114 4 187 384 35 250 6.96e-43 153
Msa0748110 AT2G36750.1 27.593 482 279 18 6 432 10 476 1.02e-41 154
Msa0748110 AT2G28080.1 27.646 463 283 19 10 436 22 468 1.92e-41 154
Msa0748110 AT5G66690.1 27.912 455 266 14 5 417 6 440 3.62e-41 153
Msa0748110 AT2G30140.1 27.233 459 283 14 6 436 13 448 6.64e-41 151
Msa0748110 AT2G30140.2 27.371 464 275 16 6 436 13 447 7.08e-41 151
Msa0748110 AT2G30150.2 26.667 465 279 16 6 436 13 449 8.27e-41 151
Msa0748110 AT4G34138.1 27.812 489 271 19 6 436 11 475 8.89e-41 152
Msa0748110 AT3G16520.3 27.520 367 244 9 91 439 98 460 8.97e-41 151
Msa0748110 AT2G36780.1 24.948 477 299 13 6 432 14 481 3.17e-40 150
Msa0748110 AT3G50740.1 27.984 486 273 18 5 435 6 469 6.39e-40 149
Msa0748110 AT1G01390.1 27.111 450 277 14 5 417 7 442 1.03e-39 149
Msa0748110 AT2G30150.1 26.681 461 276 16 10 436 1 433 1.04e-39 148
Msa0748110 AT5G26310.1 26.625 477 276 16 5 431 6 458 1.17e-39 149
Msa0748110 AT2G36760.1 25.000 492 280 15 6 432 14 481 1.18e-39 149
Msa0748110 AT1G01390.2 27.556 450 275 15 5 417 24 459 1.45e-39 149
Msa0748110 AT3G16520.2 27.778 342 226 8 91 415 98 435 5.05e-39 146
Msa0748110 AT3G16520.1 27.778 342 226 8 91 415 98 435 5.77e-39 146
Msa0748110 AT4G34131.1 26.708 483 286 15 6 436 10 476 1.22e-38 146
Msa0748110 AT1G24100.1 26.004 473 280 16 6 436 11 455 2.63e-38 144
Msa0748110 AT2G36790.1 26.819 481 285 16 6 432 13 480 4.91e-38 144
Msa0748110 AT1G73880.1 27.660 470 281 13 6 436 14 463 5.92e-38 144
Msa0748110 AT5G17050.1 25.000 452 308 13 6 436 12 453 4.90e-37 141
Msa0748110 AT4G34135.1 26.151 478 296 15 6 436 11 478 1.37e-36 140
Msa0748110 AT2G16890.2 25.482 467 286 13 6 429 9 456 7.29e-35 135
Msa0748110 AT2G29750.1 25.265 471 304 13 6 436 8 470 1.96e-34 134
Msa0748110 AT3G21750.1 22.316 475 312 13 6 436 4 465 2.55e-34 134
Msa0748110 AT2G16890.3 25.747 435 264 12 6 400 9 424 2.65e-34 133
Msa0748110 AT5G49690.1 25.586 469 284 16 6 436 10 451 1.05e-33 132
Msa0748110 AT3G53150.1 25.120 418 259 11 6 381 22 427 1.12e-33 132
Msa0748110 AT3G21790.1 22.526 475 321 10 6 436 4 475 1.19e-33 132
Msa0748110 AT4G36770.1 28.059 474 265 20 6 430 4 450 1.36e-33 131
Msa0748110 AT2G18570.1 24.174 484 296 17 5 440 4 464 6.53e-33 130
Msa0748110 AT1G30530.1 24.368 435 308 9 12 435 19 443 1.05e-32 129
Msa0748110 AT4G15280.1 22.803 478 311 14 6 436 4 470 1.36e-32 129
Msa0748110 AT3G21760.1 23.640 478 314 11 6 436 4 477 1.47e-32 129
Msa0748110 AT4G15280.2 22.803 478 311 14 6 436 36 502 2.09e-32 129
Msa0748110 AT5G14860.1 26.737 475 279 16 6 429 8 464 3.02e-32 128
Msa0748110 AT1G07250.1 24.788 472 308 13 6 437 6 470 4.06e-32 127
Msa0748110 AT3G21780.1 23.028 469 316 13 6 436 4 465 1.58e-31 126
Msa0748110 AT2G29740.1 25.157 477 298 14 6 436 8 471 1.93e-31 125
Msa0748110 AT1G07260.1 23.617 470 313 12 6 436 6 468 5.56e-31 124
Msa0748110 AT4G15260.1 24.148 352 226 9 119 436 7 351 6.79e-31 122
Msa0748110 AT3G21800.1 21.294 479 316 12 7 436 6 472 1.05e-30 124
Msa0748110 AT5G17040.2 32.821 195 125 3 225 417 122 312 1.41e-30 121
Msa0748110 AT5G17040.1 24.057 424 296 11 6 417 5 414 1.55e-30 122
Msa0748110 AT5G17030.1 24.941 425 300 9 6 417 12 430 2.04e-30 122
Msa0748110 AT2G18560.1 31.760 233 131 8 228 440 150 374 2.64e-30 121
Msa0748110 AT5G65550.1 25.173 433 281 14 6 408 9 428 4.87e-30 122
Msa0748110 AT5G54010.1 25.527 427 279 15 1 406 1 409 9.55e-30 120
Msa0748110 AT1G10400.1 25.105 474 293 17 6 437 7 460 3.03e-29 119
Msa0748110 AT5G12890.1 23.800 479 313 13 6 439 10 481 3.99e-29 119
Msa0748110 AT2G29730.1 23.011 465 314 15 6 436 5 459 1.02e-28 118
Msa0748110 AT5G37950.1 26.346 353 227 10 21 353 1 340 1.05e-28 116
Msa0748110 AT5G37950.2 26.149 348 228 10 21 353 1 334 1.87e-28 115
Msa0748110 AT2G29710.1 29.839 248 152 7 208 436 215 459 4.54e-28 116
Msa0748110 AT1G50580.1 26.362 459 291 16 1 436 1 435 1.67e-26 111
Msa0748110 AT4G27560.1 24.402 418 284 14 6 406 7 409 1.77e-26 111
Msa0748110 AT4G27570.1 24.880 418 282 14 6 406 7 409 2.80e-26 110
Msa0748110 AT1G51210.1 25.227 440 276 15 5 417 19 432 1.56e-25 108
Msa0748110 AT5G53990.1 24.424 434 269 16 1 406 1 403 1.60e-25 108
Msa0748110 AT2G22930.1 24.700 417 279 11 6 406 6 403 1.88e-25 108
Msa0748110 AT1G64920.1 24.828 435 270 16 1 406 1 407 7.73e-25 106
Msa0748110 AT5G03490.1 29.245 212 143 4 229 436 251 459 8.21e-25 106
Msa0748110 AT1G07240.1 21.610 472 323 14 7 436 6 472 9.82e-25 106
Msa0748110 AT1G64910.1 24.940 417 280 16 1 402 1 399 1.57e-24 105
Msa0748110 AT3G29630.1 25.910 467 285 17 1 436 1 437 9.56e-24 103
Msa0748110 AT1G06000.1 28.826 281 168 13 183 437 157 431 6.98e-23 100
Msa0748110 AT4G09500.2 23.982 442 284 16 6 420 6 422 7.93e-22 97.8
Msa0748110 AT3G29630.2 24.619 459 275 17 1 436 1 411 1.90e-21 96.3
Msa0748110 AT4G01070.2 28.659 328 190 13 5 307 7 315 4.34e-21 94.4
Msa0748110 AT4G09500.1 23.218 435 271 14 6 420 6 397 1.63e-20 93.6
Msa0748110 AT5G54060.1 26.168 428 265 17 8 402 15 424 8.39e-20 92.0
Msa0748110 AT2G22590.1 23.059 438 304 15 6 417 15 445 3.06e-19 90.1
Msa0748110 AT2G23210.1 24.823 282 173 10 6 265 10 274 1.83e-15 77.0

Find 106 sgRNAs with CRISPR-Local

Find 180 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATTGTTGTTACATTTATTA+TGG 0.129790 5_2:-1234937 Msa0748110:CDS
GAGATACAAACTATAAATTT+TGG 0.179488 5_2:-1233484 Msa0748110:CDS
CTAGGGCTAGTTCATTAAAT+TGG 0.232886 5_2:+1233248 None:intergenic
TTGGAAGTGGGACACAATTT+AGG 0.247177 5_2:-1234906 Msa0748110:CDS
TTACTTCCATGGAAATCATT+AGG 0.251367 5_2:+1233151 None:intergenic
TCGCCCAACTAATAAACTTT+TGG 0.254931 5_2:+1232777 None:intergenic
TGGTAGGAACTTTGGTGATA+TGG 0.260975 5_2:+1233411 None:intergenic
ACAACAACAAAAGTTCATTT+TGG 0.269702 5_2:-1233366 Msa0748110:CDS
GAAAATGACTATTAATAATA+TGG 0.275879 5_2:-1232828 Msa0748110:CDS
GTGTCCATCATAGGTATATC+AGG 0.307459 5_2:+1233562 None:intergenic
TACTTCCATGGAAATCATTA+GGG 0.333367 5_2:+1233152 None:intergenic
TGTTACATTTATTATGGGTT+GGG 0.337526 5_2:-1234931 Msa0748110:CDS
ATTTATTATGGGTTGGGCTT+TGG 0.345834 5_2:-1234925 Msa0748110:CDS
CTAGTTCATTAAATTGGTTT+TGG 0.358155 5_2:+1233254 None:intergenic
ATATCACTTCTATCATCTTC+AGG 0.358654 5_2:+1235059 None:intergenic
AGTGACCTTGCAACCATGTT+TGG 0.359865 5_2:+1235175 None:intergenic
AAGATACAACTTGCTTAGAT+TGG 0.363758 5_2:-1233339 Msa0748110:CDS
TTAACTTCTTCTATAAGCTT+TGG 0.364725 5_2:+1234990 None:intergenic
ATTGTTGTTACATTTATTAT+GGG 0.367194 5_2:-1234936 Msa0748110:CDS
AAGTTTGTTGTGTCCATCAT+AGG 0.368447 5_2:+1233553 None:intergenic
ATCCCATCTTCAATAAGTTT+AGG 0.371481 5_2:+1234822 None:intergenic
CCTACCAATTGGTCCATTGA+TGG 0.377369 5_2:-1233395 Msa0748110:CDS
TTGTTACATTTATTATGGGT+TGG 0.377839 5_2:-1234932 Msa0748110:CDS
TATGGGTTGGGCTTTGGAAG+TGG 0.378573 5_2:-1234919 Msa0748110:CDS
TCTCCAAAAGTTTATTAGTT+GGG 0.379670 5_2:-1232780 Msa0748110:CDS
ACCAGCATGTACACCTTCTA+TGG 0.381997 5_2:+1233039 None:intergenic
ACATGTCCTTGACCTGGATA+TGG 0.388636 5_2:+1235230 None:intergenic
TTGTTGTTACTTTCCATCAA+TGG 0.392206 5_2:+1233382 None:intergenic
CTTTGGTAGTGTGGTAGTAA+TGG 0.394763 5_2:-1233278 Msa0748110:CDS
TCTATAAGCTTTGGAAGTCT+TGG 0.402505 5_2:+1234999 None:intergenic
GTAAAGGTAAAATTGTTAGT+TGG 0.403350 5_2:-1233132 Msa0748110:CDS
ATCTCCAAAAGTTTATTAGT+TGG 0.404458 5_2:-1232781 Msa0748110:CDS
TAAAGGTAAAATTGTTAGTT+GGG 0.409569 5_2:-1233131 Msa0748110:CDS
TACAACTTGCTTAGATTGGT+TGG 0.410010 5_2:-1233335 Msa0748110:CDS
AACCATAAACGATCGAAAAC+CGG 0.413554 5_2:-1235134 Msa0748110:CDS
ATACCTAAACTTATTGAAGA+TGG 0.422586 5_2:-1234825 Msa0748110:CDS
TCTGTCATATATGTTTCCTT+TGG 0.423583 5_2:-1233295 Msa0748110:CDS
CTGGTGTACGTTTCTTGTGC+TGG 0.427266 5_2:-1233021 Msa0748110:CDS
ATTTGTGATGTGTGGAAGAC+TGG 0.430215 5_2:-1232962 Msa0748110:CDS
TCCAGCTTCTGCCACTACTT+TGG 0.444015 5_2:-1234862 Msa0748110:CDS
GGTGACACTACCAGATGGTT+TGG 0.448739 5_2:-1235084 Msa0748110:CDS
AGTTGGTGATGATGACATAA+AGG 0.450028 5_2:-1232870 Msa0748110:CDS
CTTTCCATCAATGGACCAAT+TGG 0.450743 5_2:+1233391 None:intergenic
ATAAGCTTTGGAAGTCTTGG+AGG 0.453431 5_2:+1235002 None:intergenic
GGATGGAATTCTACCATAGA+AGG 0.456157 5_2:-1233052 Msa0748110:CDS
AACTTGTGAGAATTGCATAA+GGG 0.457199 5_2:+1235202 None:intergenic
GATCAAAGAAGATCTTATCT+AGG 0.457542 5_2:+1233518 None:intergenic
CTCCCCTGATATACCTATGA+TGG 0.458771 5_2:-1233566 Msa0748110:CDS
GGACCAATTGGTAGGAACTT+TGG 0.458930 5_2:+1233403 None:intergenic
TCACCAAAGTTCCTACCAAT+TGG 0.467404 5_2:-1233406 Msa0748110:CDS
TACCTAAACTTATTGAAGAT+GGG 0.472278 5_2:-1234824 Msa0748110:CDS
TTTCTTGTTATACCATATCC+AGG 0.475958 5_2:-1235242 Msa0748110:CDS
TTTACCTTGTTGTCATTACT+AGG 0.478103 5_2:+1233184 None:intergenic
AATGATTTCCATGGAAGTAA+AGG 0.480314 5_2:-1233148 Msa0748110:CDS
ATGGGTTGGGCTTTGGAAGT+GGG 0.481210 5_2:-1234918 Msa0748110:CDS
TGTCTAGAAGATCAAGTCCT+AGG 0.486727 5_2:+1233230 None:intergenic
CACTTGTATCTTGTCTTGCT+CGG 0.488719 5_2:+1235106 None:intergenic
AAGAAGGTGGATCAAGTAGT+TGG 0.496740 5_2:-1232887 Msa0748110:CDS
TCTTCAGGTTCCAAACCATC+TGG 0.498598 5_2:+1235074 None:intergenic
GAACTTGTGAGAATTGCATA+AGG 0.502829 5_2:+1235201 None:intergenic
ACTATTAATAATATGGAAGA+AGG 0.514243 5_2:-1232821 Msa0748110:CDS
CTTATGAAGCAAGCAATGGC+TGG 0.514750 5_2:+1233082 None:intergenic
GCCAAAGTAGTGGCAGAAGC+TGG 0.515181 5_2:+1234861 None:intergenic
GGACGAACAACCCAAAGAAA+AGG 0.516602 5_2:+1233205 None:intergenic
CTTTGGAAGTCTTGGAGGCA+TGG 0.521064 5_2:+1235007 None:intergenic
ATATGTTTCCTTTGGTAGTG+TGG 0.521270 5_2:-1233287 Msa0748110:CDS
GGACACAATTTAGGAATCAA+AGG 0.524020 5_2:-1234897 Msa0748110:CDS
GCATACCCTAATGATTTCCA+TGG 0.524493 5_2:-1233157 Msa0748110:CDS
GACACAATTTAGGAATCAAA+GGG 0.528806 5_2:-1234896 Msa0748110:CDS
GAATTAGAGAAAGATGATGA+TGG 0.530243 5_2:-1232935 Msa0748110:CDS
GAAACATATATGACAGATTG+AGG 0.532322 5_2:+1233301 None:intergenic
GATGGGATTATTGATTCTGA+AGG 0.541173 5_2:-1234807 Msa0748110:intron
CTTGTCTTGCTCGGAAACAC+CGG 0.544929 5_2:+1235115 None:intergenic
AAGGCAAGAGTTAAGAAAGA+AGG 0.546737 5_2:-1232903 Msa0748110:CDS
GCTTCATAAGTCATTGTGGA+TGG 0.554894 5_2:-1233069 Msa0748110:CDS
TTTGGAGATTATGTGATGAC+TGG 0.561048 5_2:+1232795 None:intergenic
GTCTAGAAGATCAAGTCCTA+GGG 0.562784 5_2:+1233231 None:intergenic
ACCATAGAAGGTGTACATGC+TGG 0.563487 5_2:-1233040 Msa0748110:CDS
ACTGCTTATGATCTTGAGCC+TGG 0.563828 5_2:-1233442 Msa0748110:CDS
TGTCCATCATAGGTATATCA+GGG 0.572365 5_2:+1233563 None:intergenic
TGAAGCAAGCAATGGCTGGA+TGG 0.573516 5_2:+1233086 None:intergenic
CCATCAATGGACCAATTGGT+AGG 0.574039 5_2:+1233395 None:intergenic
GCAAGAGTTAAGAAAGAAGG+TGG 0.577406 5_2:-1232900 Msa0748110:CDS
TCTTATCTAGGCCGCGCCAT+GGG 0.585959 5_2:+1233530 None:intergenic
AATCATATATTTGTGATGTG+TGG 0.589638 5_2:-1232970 Msa0748110:CDS
CAATTTAATGAACTAGCCCT+AGG 0.592472 5_2:-1233247 Msa0748110:CDS
CATTACTACCACACTACCAA+AGG 0.593338 5_2:+1233279 None:intergenic
GGGTTAACATGTCCTTGACC+TGG 0.597282 5_2:+1235224 None:intergenic
TATGGTATAACAAGAAAATG+TGG 0.598798 5_2:+1235248 None:intergenic
GACAGCACACGCCAAAGTAG+TGG 0.602253 5_2:+1234851 None:intergenic
ACAACAAACTTCCCATGGCG+CGG 0.605733 5_2:-1233541 Msa0748110:CDS
ATTAATAATATGGAAGAAGG+TGG 0.607660 5_2:-1232818 Msa0748110:CDS
GTTATACCATATCCAGGTCA+AGG 0.608398 5_2:-1235236 Msa0748110:CDS
ACTTGTGAGAATTGCATAAG+GGG 0.611094 5_2:+1235203 None:intergenic
TCACAAGTTCTAGCCAAACA+TGG 0.613083 5_2:-1235188 Msa0748110:CDS
TCTAGCCAAACATGGTTGCA+AGG 0.620565 5_2:-1235180 Msa0748110:CDS
GGTGATATGGAAAATACACC+AGG 0.626519 5_2:+1233424 None:intergenic
GCTTGCTTCATAAGTCATTG+TGG 0.630073 5_2:-1233073 Msa0748110:CDS
TGGACACAACAAACTTCCCA+TGG 0.633427 5_2:-1233546 Msa0748110:CDS
ATGACTTATGAAGCAAGCAA+TGG 0.646585 5_2:+1233078 None:intergenic
CGAGCAAGACAAGATACAAG+TGG 0.649951 5_2:-1235105 Msa0748110:CDS
CTTGTGAGAATTGCATAAGG+GGG 0.662045 5_2:+1235204 None:intergenic
TCGTCCTAGTAATGACAACA+AGG 0.682098 5_2:-1233188 Msa0748110:CDS
CAAGTGGTGACACTACCAGA+TGG 0.688058 5_2:-1235089 Msa0748110:CDS
GTCCATCATAGGTATATCAG+GGG 0.691231 5_2:+1233564 None:intergenic
ACACAATTTAGGAATCAAAG+GGG 0.750071 5_2:-1234895 Msa0748110:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAGTTATTAAATAAAATTGT+AGG - chr5_2:1233952-1233971 Msa0748110:intron 10.0%
!!! TATTGTTGTTACATTTATTA+TGG - chr5_2:1233095-1233114 Msa0748110:CDS 15.0%
!!! ATTGTTGTTACATTTATTAT+GGG - chr5_2:1233096-1233115 Msa0748110:CDS 15.0%
!!! TTTTTTGAAGAAACTAAAAT+GGG + chr5_2:1233662-1233681 None:intergenic 15.0%
!!! TTTTTTTGAAGAAACTAAAA+TGG + chr5_2:1233663-1233682 None:intergenic 15.0%
!!! ATATCAACTTTTCTTATTTA+TGG - chr5_2:1233685-1233704 Msa0748110:intron 15.0%
!! TTAAATAAAATTGTAGGAAT+AGG - chr5_2:1233958-1233977 Msa0748110:intron 15.0%
!! TATATTACTTTAGTGAATTA+TGG + chr5_2:1234225-1234244 None:intergenic 15.0%
!! TAATTCACTAAAGTAATATA+TGG - chr5_2:1234225-1234244 Msa0748110:intron 15.0%
!! GAAAATGACTATTAATAATA+TGG - chr5_2:1235204-1235223 Msa0748110:CDS 15.0%
!!! AGATTTCACAATTAGTATTT+TGG - chr5_2:1233272-1233291 Msa0748110:CDS 20.0%
!!! GATTTCACAATTAGTATTTT+GGG - chr5_2:1233273-1233292 Msa0748110:CDS 20.0%
!! ATTTAATAACTTTCTACTTC+AGG + chr5_2:1233944-1233963 None:intergenic 20.0%
!! ACAATATCTCTAAATTAGAA+GGG + chr5_2:1234155-1234174 None:intergenic 20.0%
!! AACAATATCTCTAAATTAGA+AGG + chr5_2:1234156-1234175 None:intergenic 20.0%
!! TTAGAGATATTGTTGTAATT+TGG - chr5_2:1234162-1234181 Msa0748110:intron 20.0%
!!! GATTTGAATTTCTTGTTTTT+TGG + chr5_2:1234447-1234466 None:intergenic 20.0%
!!! GAGATACAAACTATAAATTT+TGG - chr5_2:1234548-1234567 Msa0748110:intron 20.0%
!!! AAACTATAAATTTTGGAGAA+TGG - chr5_2:1234555-1234574 Msa0748110:intron 20.0%
!! TAAAGGTAAAATTGTTAGTT+GGG - chr5_2:1234901-1234920 Msa0748110:CDS 20.0%
!!! TGGTTCAATATTTTATTTTG+TGG + chr5_2:1234929-1234948 None:intergenic 20.0%
!! AGAAATTGATCAGTAAAAAA+TGG + chr5_2:1235037-1235056 None:intergenic 20.0%
!! ACTATTAATAATATGGAAGA+AGG - chr5_2:1235211-1235230 Msa0748110:CDS 20.0%
! TATGGTATAACAAGAAAATG+TGG + chr5_2:1232787-1232806 None:intergenic 25.0%
! TTAACTTCTTCTATAAGCTT+TGG + chr5_2:1233045-1233064 None:intergenic 25.0%
! TTGTTACATTTATTATGGGT+TGG - chr5_2:1233100-1233119 Msa0748110:CDS 25.0%
! TGTTACATTTATTATGGGTT+GGG - chr5_2:1233101-1233120 Msa0748110:CDS 25.0%
! ATACCTAAACTTATTGAAGA+TGG - chr5_2:1233207-1233226 Msa0748110:CDS 25.0%
! TACCTAAACTTATTGAAGAT+GGG - chr5_2:1233208-1233227 Msa0748110:CDS 25.0%
!!! GGTAATACTTTTTACTGTTT+TGG - chr5_2:1233246-1233265 Msa0748110:CDS 25.0%
!!! TGAATAAGAAACTAGCTTTA+TGG + chr5_2:1233308-1233327 None:intergenic 25.0%
! TGTCAAATAATTACAAAGGT+AGG + chr5_2:1233567-1233586 None:intergenic 25.0%
! TGTCTGTCAAATAATTACAA+AGG + chr5_2:1233571-1233590 None:intergenic 25.0%
!!! TTCAATTAATTTGTTGAGCA+TGG - chr5_2:1234074-1234093 Msa0748110:intron 25.0%
! AAGTCATATGTATGATACTA+CGG + chr5_2:1234189-1234208 None:intergenic 25.0%
! GAAACATATTTCACAAACAA+TGG + chr5_2:1234320-1234339 None:intergenic 25.0%
! TGTAACATAATATCAAGTTC+AGG - chr5_2:1234366-1234385 Msa0748110:intron 25.0%
!!! TGAATTTCTTGTTTTTTGGT+GGG + chr5_2:1234443-1234462 None:intergenic 25.0%
!!! TTGAATTTCTTGTTTTTTGG+TGG + chr5_2:1234444-1234463 None:intergenic 25.0%
!! ACAACAACAAAAGTTCATTT+TGG - chr5_2:1234666-1234685 Msa0748110:intron 25.0%
!!! CTAGTTCATTAAATTGGTTT+TGG + chr5_2:1234781-1234800 None:intergenic 25.0%
! GTAAAGGTAAAATTGTTAGT+TGG - chr5_2:1234900-1234919 Msa0748110:CDS 25.0%
! AATCATATATTTGTGATGTG+TGG - chr5_2:1235062-1235081 Msa0748110:CDS 25.0%
!!! ATGATGATGGTTTTATATCA+AGG - chr5_2:1235110-1235129 Msa0748110:CDS 25.0%
! ATTAATAATATGGAAGAAGG+TGG - chr5_2:1235214-1235233 Msa0748110:CDS 25.0%
! ATCTCCAAAAGTTTATTAGT+TGG - chr5_2:1235251-1235270 Msa0748110:CDS 25.0%
! TCTCCAAAAGTTTATTAGTT+GGG - chr5_2:1235252-1235271 Msa0748110:CDS 25.0%
! TTTCTTGTTATACCATATCC+AGG - chr5_2:1232790-1232809 Msa0748110:CDS 30.0%
AACTTGTGAGAATTGCATAA+GGG + chr5_2:1232833-1232852 None:intergenic 30.0%
ATATCACTTCTATCATCTTC+AGG + chr5_2:1232976-1232995 None:intergenic 30.0%
GACACAATTTAGGAATCAAA+GGG - chr5_2:1233136-1233155 Msa0748110:CDS 30.0%
ACACAATTTAGGAATCAAAG+GGG - chr5_2:1233137-1233156 Msa0748110:CDS 30.0%
ATCCCATCTTCAATAAGTTT+AGG + chr5_2:1233213-1233232 None:intergenic 30.0%
!! TTTTTCTGTCATCTCTAGAA+TGG + chr5_2:1233437-1233456 None:intergenic 30.0%
! AATAATGCCTCTTTTGTGTA+CGG - chr5_2:1233490-1233509 Msa0748110:CDS 30.0%
GTAGTATCATACATATGACT+TGG - chr5_2:1234188-1234207 Msa0748110:intron 30.0%
GATCATTTGTTTATGCAACA+CGG + chr5_2:1234292-1234311 None:intergenic 30.0%
GATCAAAGAAGATCTTATCT+AGG + chr5_2:1234517-1234536 None:intergenic 30.0%
!! CTATAAATTTTGGAGAATGG+TGG - chr5_2:1234558-1234577 Msa0748110:intron 30.0%
!! TTGTTGTTACTTTCCATCAA+TGG + chr5_2:1234653-1234672 None:intergenic 30.0%
! AAGATACAACTTGCTTAGAT+TGG - chr5_2:1234693-1234712 Msa0748110:intron 30.0%
GAAACATATATGACAGATTG+AGG + chr5_2:1234734-1234753 None:intergenic 30.0%
TCTGTCATATATGTTTCCTT+TGG - chr5_2:1234737-1234756 Msa0748110:intron 30.0%
! TTTACCTTGTTGTCATTACT+AGG + chr5_2:1234851-1234870 None:intergenic 30.0%
TACTTCCATGGAAATCATTA+GGG + chr5_2:1234883-1234902 None:intergenic 30.0%
TTACTTCCATGGAAATCATT+AGG + chr5_2:1234884-1234903 None:intergenic 30.0%
AATGATTTCCATGGAAGTAA+AGG - chr5_2:1234884-1234903 Msa0748110:CDS 30.0%
! CAATTTTACCTTTACTTCCA+TGG + chr5_2:1234895-1234914 None:intergenic 30.0%
GAATTAGAGAAAGATGATGA+TGG - chr5_2:1235097-1235116 Msa0748110:CDS 30.0%
ACTTGTGAGAATTGCATAAG+GGG + chr5_2:1232832-1232851 None:intergenic 35.0%
GAACTTGTGAGAATTGCATA+AGG + chr5_2:1232834-1232853 None:intergenic 35.0%
AACCATAAACGATCGAAAAC+CGG - chr5_2:1232898-1232917 Msa0748110:CDS 35.0%
!! TCTATAAGCTTTGGAAGTCT+TGG + chr5_2:1233036-1233055 None:intergenic 35.0%
!! ATTTATTATGGGTTGGGCTT+TGG - chr5_2:1233107-1233126 Msa0748110:CDS 35.0%
GGACACAATTTAGGAATCAA+AGG - chr5_2:1233135-1233154 Msa0748110:CDS 35.0%
!! GATGGGATTATTGATTCTGA+AGG - chr5_2:1233225-1233244 Msa0748110:CDS 35.0%
AAGTTAAGTTCCACGCTTAT+TGG - chr5_2:1233455-1233474 Msa0748110:CDS 35.0%
CGATACCCAAACAAAACAAA+GGG + chr5_2:1233537-1233556 None:intergenic 35.0%
!!! CCTTTGTTTTGTTTGGGTAT+CGG - chr5_2:1233535-1233554 Msa0748110:CDS 35.0%
AACTTTCTACTTCAGGATTG+TGG + chr5_2:1233937-1233956 None:intergenic 35.0%
!! TAATTTGTTGAGCATGGCAT+TGG - chr5_2:1234080-1234099 Msa0748110:intron 35.0%
!! AATTTGTTGAGCATGGCATT+GGG - chr5_2:1234081-1234100 Msa0748110:intron 35.0%
TGTCCATCATAGGTATATCA+GGG + chr5_2:1234472-1234491 None:intergenic 35.0%
!! AAGTTTGTTGTGTCCATCAT+AGG + chr5_2:1234482-1234501 None:intergenic 35.0%
! TACAACTTGCTTAGATTGGT+TGG - chr5_2:1234697-1234716 Msa0748110:intron 35.0%
!! ATATGTTTCCTTTGGTAGTG+TGG - chr5_2:1234745-1234764 Msa0748110:intron 35.0%
!! CTAGGGCTAGTTCATTAAAT+TGG + chr5_2:1234787-1234806 None:intergenic 35.0%
CAATTTAATGAACTAGCCCT+AGG - chr5_2:1234785-1234804 Msa0748110:intron 35.0%
! TTCTAGACAAGCCTTTTCTT+TGG - chr5_2:1234816-1234835 Msa0748110:CDS 35.0%
! TCTAGACAAGCCTTTTCTTT+GGG - chr5_2:1234817-1234836 Msa0748110:CDS 35.0%
ATGACTTATGAAGCAAGCAA+TGG + chr5_2:1234957-1234976 None:intergenic 35.0%
AAGGCAAGAGTTAAGAAAGA+AGG - chr5_2:1235129-1235148 Msa0748110:CDS 35.0%
!! AGTTGGTGATGATGACATAA+AGG - chr5_2:1235162-1235181 Msa0748110:CDS 35.0%
TTTGGAGATTATGTGATGAC+TGG + chr5_2:1235240-1235259 None:intergenic 35.0%
! TCGCCCAACTAATAAACTTT+TGG + chr5_2:1235258-1235277 None:intergenic 35.0%
GTTATACCATATCCAGGTCA+AGG - chr5_2:1232796-1232815 Msa0748110:CDS 40.0%
CTTGTGAGAATTGCATAAGG+GGG + chr5_2:1232831-1232850 None:intergenic 40.0%
! TCACAAGTTCTAGCCAAACA+TGG - chr5_2:1232844-1232863 Msa0748110:CDS 40.0%
CACTTGTATCTTGTCTTGCT+CGG + chr5_2:1232929-1232948 None:intergenic 40.0%
!! ATAAGCTTTGGAAGTCTTGG+AGG + chr5_2:1233033-1233052 None:intergenic 40.0%
TTGGAAGTGGGACACAATTT+AGG - chr5_2:1233126-1233145 Msa0748110:CDS 40.0%
GATCATTTCTTCAGCTTCTG+TGG - chr5_2:1233347-1233366 Msa0748110:CDS 40.0%
! TTTTGTGTGTGTGGCTCATT+TGG - chr5_2:1233371-1233390 Msa0748110:CDS 40.0%
TTAAGTTCCACGCTTATTGG+TGG - chr5_2:1233458-1233477 Msa0748110:CDS 40.0%
!!! TCGGACCCTTTGTTTTGTTT+GGG - chr5_2:1233529-1233548 Msa0748110:CDS 40.0%
CCGATACCCAAACAAAACAA+AGG + chr5_2:1233538-1233557 None:intergenic 40.0%
GTCCATCATAGGTATATCAG+GGG + chr5_2:1234471-1234490 None:intergenic 40.0%
GTGTCCATCATAGGTATATC+AGG + chr5_2:1234473-1234492 None:intergenic 40.0%
GGTGATATGGAAAATACACC+AGG + chr5_2:1234611-1234630 None:intergenic 40.0%
! TGGTAGGAACTTTGGTGATA+TGG + chr5_2:1234624-1234643 None:intergenic 40.0%
TCACCAAAGTTCCTACCAAT+TGG - chr5_2:1234626-1234645 Msa0748110:intron 40.0%
CTTTCCATCAATGGACCAAT+TGG + chr5_2:1234644-1234663 None:intergenic 40.0%
CATTACTACCACACTACCAA+AGG + chr5_2:1234756-1234775 None:intergenic 40.0%
!! CTTTGGTAGTGTGGTAGTAA+TGG - chr5_2:1234754-1234773 Msa0748110:intron 40.0%
GTCTAGAAGATCAAGTCCTA+GGG + chr5_2:1234804-1234823 None:intergenic 40.0%
TGTCTAGAAGATCAAGTCCT+AGG + chr5_2:1234805-1234824 None:intergenic 40.0%
TCGTCCTAGTAATGACAACA+AGG - chr5_2:1234844-1234863 Msa0748110:CDS 40.0%
GCATACCCTAATGATTTCCA+TGG - chr5_2:1234875-1234894 Msa0748110:CDS 40.0%
GCTTGCTTCATAAGTCATTG+TGG - chr5_2:1234959-1234978 Msa0748110:CDS 40.0%
GCTTCATAAGTCATTGTGGA+TGG - chr5_2:1234963-1234982 Msa0748110:CDS 40.0%
GGATGGAATTCTACCATAGA+AGG - chr5_2:1234980-1234999 Msa0748110:CDS 40.0%
ATTTGTGATGTGTGGAAGAC+TGG - chr5_2:1235070-1235089 Msa0748110:CDS 40.0%
GCAAGAGTTAAGAAAGAAGG+TGG - chr5_2:1235132-1235151 Msa0748110:CDS 40.0%
AAGAAGGTGGATCAAGTAGT+TGG - chr5_2:1235145-1235164 Msa0748110:CDS 40.0%
ACATGTCCTTGACCTGGATA+TGG + chr5_2:1232805-1232824 None:intergenic 45.0%
TCTAGCCAAACATGGTTGCA+AGG - chr5_2:1232852-1232871 Msa0748110:CDS 45.0%
AGTGACCTTGCAACCATGTT+TGG + chr5_2:1232860-1232879 None:intergenic 45.0%
!!! CACCGGTTTTCGATCGTTTA+TGG + chr5_2:1232903-1232922 None:intergenic 45.0%
CGAGCAAGACAAGATACAAG+TGG - chr5_2:1232927-1232946 Msa0748110:CDS 45.0%
! TCTTCAGGTTCCAAACCATC+TGG + chr5_2:1232961-1232980 None:intergenic 45.0%
! TTCTGTGGCTTTTGTGTGTG+TGG - chr5_2:1233362-1233381 Msa0748110:CDS 45.0%
CCTTTAACCACCAATAAGCG+TGG + chr5_2:1233468-1233487 None:intergenic 45.0%
! CCACGCTTATTGGTGGTTAA+AGG - chr5_2:1233465-1233484 Msa0748110:CDS 45.0%
CTCACAACCGTACACAAAAG+AGG + chr5_2:1233500-1233519 None:intergenic 45.0%
!!! GTCGGACCCTTTGTTTTGTT+TGG - chr5_2:1233528-1233547 Msa0748110:CDS 45.0%
AGCACAAGGTGTGCTAAAGA+AGG + chr5_2:1233609-1233628 None:intergenic 45.0%
TAGCACACCTTGTGCTTAAG+AGG - chr5_2:1233613-1233632 Msa0748110:intron 45.0%
CCACTGCGACTAAAGAGTAA+CGG + chr5_2:1234256-1234275 None:intergenic 45.0%
TACTCTTTAGTCGCAGTGGT+AGG - chr5_2:1234257-1234276 Msa0748110:intron 45.0%
! TGATCTCCTTTTCGCATTGC+AGG - chr5_2:1234413-1234432 Msa0748110:intron 45.0%
GGATTTCCTGCAATGCGAAA+AGG + chr5_2:1234422-1234441 None:intergenic 45.0%
CTCCCCTGATATACCTATGA+TGG - chr5_2:1234466-1234485 Msa0748110:intron 45.0%
TGGACACAACAAACTTCCCA+TGG - chr5_2:1234486-1234505 Msa0748110:intron 45.0%
ACTGCTTATGATCTTGAGCC+TGG - chr5_2:1234590-1234609 Msa0748110:intron 45.0%
GGACCAATTGGTAGGAACTT+TGG + chr5_2:1234632-1234651 None:intergenic 45.0%
CCATCAATGGACCAATTGGT+AGG + chr5_2:1234640-1234659 None:intergenic 45.0%
CCTACCAATTGGTCCATTGA+TGG - chr5_2:1234637-1234656 Msa0748110:intron 45.0%
GGACGAACAACCCAAAGAAA+AGG + chr5_2:1234830-1234849 None:intergenic 45.0%
CTTATGAAGCAAGCAATGGC+TGG + chr5_2:1234953-1234972 None:intergenic 45.0%
! ACCATAGAAGGTGTACATGC+TGG - chr5_2:1234992-1235011 Msa0748110:CDS 45.0%
ACCAGCATGTACACCTTCTA+TGG + chr5_2:1234996-1235015 None:intergenic 45.0%
GGGTTAACATGTCCTTGACC+TGG + chr5_2:1232811-1232830 None:intergenic 50.0%
CTTGTCTTGCTCGGAAACAC+CGG + chr5_2:1232920-1232939 None:intergenic 50.0%
CAAGTGGTGACACTACCAGA+TGG - chr5_2:1232943-1232962 Msa0748110:CDS 50.0%
GGTGACACTACCAGATGGTT+TGG - chr5_2:1232948-1232967 Msa0748110:CDS 50.0%
! CTTTGGAAGTCTTGGAGGCA+TGG + chr5_2:1233028-1233047 None:intergenic 50.0%
!! TATGGGTTGGGCTTTGGAAG+TGG - chr5_2:1233113-1233132 Msa0748110:CDS 50.0%
!! ATGGGTTGGGCTTTGGAAGT+GGG - chr5_2:1233114-1233133 Msa0748110:CDS 50.0%
TCCAGCTTCTGCCACTACTT+TGG - chr5_2:1233170-1233189 Msa0748110:CDS 50.0%
TTGTGTACGGTTGTGAGCAG+TGG - chr5_2:1233503-1233522 Msa0748110:CDS 50.0%
AGAGACGCCTCTTAAGCACA+AGG + chr5_2:1233623-1233642 None:intergenic 50.0%
TGGGAGGTGATCATCTAGCA+TGG - chr5_2:1234117-1234136 Msa0748110:intron 50.0%
CCGTTACTCTTTAGTCGCAG+TGG - chr5_2:1234253-1234272 Msa0748110:intron 50.0%
GTCGCAGTGGTAGGTACATT+TGG - chr5_2:1234266-1234285 Msa0748110:intron 50.0%
ACAACAAACTTCCCATGGCG+CGG - chr5_2:1234491-1234510 Msa0748110:intron 50.0%
TGAAGCAAGCAATGGCTGGA+TGG + chr5_2:1234949-1234968 None:intergenic 50.0%
CTGGTGTACGTTTCTTGTGC+TGG - chr5_2:1235011-1235030 Msa0748110:CDS 50.0%
GCCAAAGTAGTGGCAGAAGC+TGG + chr5_2:1233174-1233193 None:intergenic 55.0%
GACAGCACACGCCAAAGTAG+TGG + chr5_2:1233184-1233203 None:intergenic 55.0%
TGTACGGTTGTGAGCAGTGG+CGG - chr5_2:1233506-1233525 Msa0748110:CDS 55.0%
! GTTGAGCATGGCATTGGGAG+AGG - chr5_2:1234086-1234105 Msa0748110:intron 55.0%
! AGCATGGCATTGGGAGAGGA+AGG - chr5_2:1234090-1234109 Msa0748110:intron 55.0%
! GCATGGCATTGGGAGAGGAA+GGG - chr5_2:1234091-1234110 Msa0748110:intron 55.0%
! CATGGCATTGGGAGAGGAAG+GGG - chr5_2:1234092-1234111 Msa0748110:intron 55.0%
TCTTATCTAGGCCGCGCCAT+GGG + chr5_2:1234505-1234524 None:intergenic 55.0%
ATCTTATCTAGGCCGCGCCA+TGG + chr5_2:1234506-1234525 None:intergenic 55.0%
! ATTGGGAGAGGAAGGGGCGT+GGG - chr5_2:1234098-1234117 Msa0748110:intron 60.0%
CGGTTGTGAGCAGTGGCGGT+CGG - chr5_2:1233510-1233529 Msa0748110:CDS 65.0%
CATTGGGAGAGGAAGGGGCG+TGG - chr5_2:1234097-1234116 Msa0748110:intron 65.0%
! GGGAGAGGAAGGGGCGTGGG+AGG - chr5_2:1234101-1234120 Msa0748110:intron 75.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 1232772 1235282 1232772 ID=Msa0748110;Name=Msa0748110
chr5_2 mRNA 1232772 1235282 1232772 ID=Msa0748110-mRNA-1;Parent=Msa0748110;Name=Msa0748110-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|1|0|1|1|1|2|0|440
chr5_2 exon 1234808 1235282 1234808 ID=Msa0748110-mRNA-1:exon:290;Parent=Msa0748110-mRNA-1
chr5_2 exon 1232772 1233619 1232772 ID=Msa0748110-mRNA-1:exon:289;Parent=Msa0748110-mRNA-1
chr5_2 CDS 1234808 1235282 1234808 ID=Msa0748110-mRNA-1:cds;Parent=Msa0748110-mRNA-1
chr5_2 CDS 1232772 1233619 1232772 ID=Msa0748110-mRNA-1:cds;Parent=Msa0748110-mRNA-1
Gene Sequence

>Msa0748110

ATGGGTGTATTGCCACATTTTCTTGTTATACCATATCCAGGTCAAGGACATGTTAACCCCCTTATGCAATTCTCACAAGTTCTAGCCAAACATGGTTGCAAGGTCACTTTTCTACATACTGAGTTTAACCATAAACGATCGAAAACCGGTGTTTCCGAGCAAGACAAGATACAAGTGGTGACACTACCAGATGGTTTGGAACCTGAAGATGATAGAAGTGATATGAAGAAAGTTCTATTATCAATTAAAAGCACCATGCCTCCAAGACTTCCAAAGCTTATAGAAGAAGTTAATGCTTTGAATGTTGACAACAAGATCAATTGTATTGTTGTTACATTTATTATGGGTTGGGCTTTGGAAGTGGGACACAATTTAGGAATCAAAGGGGCTCTACTTTGTCCAGCTTCTGCCACTACTTTGGCGTGTGCTGTCTTCATACCTAAACTTATTGAAGATGGGATTATTGATTCTGAAGGAAATCCCACCAAAAAACAAGAAATTCAAATCTCCCCTGATATACCTATGATGGACACAACAAACTTCCCATGGCGCGGCCTAGATAAGATCTTCTTTGATCATTTTGTGCAAGAGATACAAACTATAAATTTTGGAGAATGGTGGCTTTGCAACACTGCTTATGATCTTGAGCCTGGTGTATTTTCCATATCACCAAAGTTCCTACCAATTGGTCCATTGATGGAAAGTAACAACAACAAAAGTTCATTTTGGCAAGAAGATACAACTTGCTTAGATTGGTTGGATAAGCAAGCACCTCAATCTGTCATATATGTTTCCTTTGGTAGTGTGGTAGTAATGGACCAAAACCAATTTAATGAACTAGCCCTAGGACTTGATCTTCTAGACAAGCCTTTTCTTTGGGTTGTTCGTCCTAGTAATGACAACAAGGTAAACTATGCATACCCTAATGATTTCCATGGAAGTAAAGGTAAAATTGTTAGTTGGGCACCACAAAATAAAATATTGAACCATCCAGCCATTGCTTGCTTCATAAGTCATTGTGGATGGAATTCTACCATAGAAGGTGTACATGCTGGTGTACGTTTCTTGTGCTGGCCATTTTTTACTGATCAATTTCTCAATAAATCATATATTTGTGATGTGTGGAAGACTGGACTTGAATTAGAGAAAGATGATGATGGTTTTATATCAAGGCAAGAGTTAAGAAAGAAGGTGGATCAAGTAGTTGGTGATGATGACATAAAGGCAATGTGTTTGAAAATGAAGAAAATGACTATTAATAATATGGAAGAAGGTGGCCAGTCATCACATAATCTCCAAAAGTTTATTAGTTGGGCGAATTAA
Protein sequence

>Msa0748110

MGVLPHFLVIPYPGQGHVNPLMQFSQVLAKHGCKVTFLHTEFNHKRSKTGVSEQDKIQVVTLPDGLEPEDDRSDMKKVLLSIKSTMPPRLPKLIEEVNALNVDNKINCIVVTFIMGWALEVGHNLGIKGALLCPASATTLACAVFIPKLIEDGIIDSEGNPTKKQEIQISPDIPMMDTTNFPWRGLDKIFFDHFVQEIQTINFGEWWLCNTAYDLEPGVFSISPKFLPIGPLMESNNNKSSFWQEDTTCLDWLDKQAPQSVIYVSFGSVVVMDQNQFNELALGLDLLDKPFLWVVRPSNDNKVNYAYPNDFHGSKGKIVSWAPQNKILNHPAIACFISHCGWNSTIEGVHAGVRFLCWPFFTDQFLNKSYICDVWKTGLELEKDDDGFISRQELRKKVDQVVGDDDIKAMCLKMKKMTINNMEEGGQSSHNLQKFISWAN*