Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0748210 | sp|F4JZT3|ARR24_ARATH | 32.381 | 105 | 71 | 0 | 33 | 137 | 18 | 122 | 1.35e-15 | 72.0 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0748210 | G7JJU6 | 78.523 | 149 | 32 | 0 | 1 | 149 | 1 | 149 | 4.07e-81 | 245 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0748210 | TR | Others |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0748210 | Msa1073030 | 0.948630 | 6.441427e-107 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0748210 | MtrunA17_Chr6g0451941 | 78.523 | 149 | 32 | 0 | 1 | 149 | 1 | 149 | 7.84e-85 | 245 |
| Msa0748210 | MtrunA17_Chr8g0364781 | 31.304 | 115 | 77 | 1 | 33 | 145 | 12 | 126 | 8.60e-15 | 67.0 |
| Msa0748210 | MtrunA17_Chr7g0262351 | 30.973 | 113 | 77 | 1 | 25 | 137 | 14 | 125 | 1.22e-14 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0748210 | AT5G26594.1 | 32.381 | 105 | 71 | 0 | 33 | 137 | 18 | 122 | 1.37e-16 | 72.0 |
Find 22 sgRNAs with CRISPR-Local
Find 208 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAAAACTTTCTTTGGTTAA+AGG | 0.152490 | 5_2:-1357598 | None:intergenic |
| CTTTCTTTGGTTAAAGGTTT+TGG | 0.180470 | 5_2:-1357592 | None:intergenic |
| CTCTTTCATTTGTTTATATC+TGG | 0.180960 | 5_2:-1356127 | None:intergenic |
| TACCTGGGGTCCATTGATTA+TGG | 0.224477 | 5_2:-1356373 | None:intergenic |
| GACCAGTTCAAAACTTTCTT+TGG | 0.249411 | 5_2:-1357605 | None:intergenic |
| TAGCACCAGTCAATAAAATA+TGG | 0.283273 | 5_2:-1356317 | None:intergenic |
| GCTTCTTGAGAACTATTTGC+AGG | 0.359227 | 5_2:-1356291 | None:intergenic |
| ATCAATGCATTGCTAATAGA+TGG | 0.376367 | 5_2:+1356207 | Msa0748210:CDS |
| CATCAAATGCTTGAATCAAT+AGG | 0.381106 | 5_2:+1356255 | Msa0748210:CDS |
| TTTGATTTGTCCATAATCAA+TGG | 0.400791 | 5_2:+1356363 | Msa0748210:CDS |
| TTTCATTTGTTTATATCTGG+TGG | 0.469134 | 5_2:-1356124 | None:intergenic |
| GTGAGACAGATGCGTGCAAT+GGG | 0.473335 | 5_2:+1357481 | Msa0748210:CDS |
| AACATGAAATTCATGTGTAT+CGG | 0.526904 | 5_2:-1357639 | None:intergenic |
| AGCAATGCATTGATGAGATA+AGG | 0.528514 | 5_2:-1356198 | None:intergenic |
| TGAGACTGCAACGAGACGCT+TGG | 0.539108 | 5_2:+1356230 | Msa0748210:CDS |
| GTCCATAATCAATGGACCCC+AGG | 0.541606 | 5_2:+1356371 | Msa0748210:CDS |
| ATTGCACATACAATGGATGC+AGG | 0.592854 | 5_2:+1356099 | None:intergenic |
| ATGAAATTCATGTGTATCGG+AGG | 0.606494 | 5_2:-1357636 | None:intergenic |
| GGTGAGACAGATGCGTGCAA+TGG | 0.623881 | 5_2:+1357480 | Msa0748210:CDS |
| GGGATACAGAGCAAGATGGT+CGG | 0.640760 | 5_2:+1357502 | Msa0748210:CDS |
| AATGGGGATACAGAGCAAGA+TGG | 0.668118 | 5_2:+1357498 | Msa0748210:CDS |
| TGAGACAGATGCGTGCAATG+GGG | 0.812421 | 5_2:+1357482 | Msa0748210:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGTTAGTAGTATTAATTAA+GGG | - | chr5_2:1357201-1357220 | None:intergenic | 15.0% |
| !! | AAGTTAGTAGTATTAATTAA+GGG | - | chr5_2:1357201-1357220 | None:intergenic | 15.0% |
| !! | TAAAGAAATTGTTTATACCT+GGG | - | chr5_2:1356391-1356410 | None:intergenic | 20.0% |
| !! | ATAAAGAAATTGTTTATACC+TGG | - | chr5_2:1356392-1356411 | None:intergenic | 20.0% |
| !! | AAAAGTTAACGTCATATTTA+CGG | + | chr5_2:1356488-1356507 | Msa0748210:intron | 20.0% |
| !! | TAATAATTTAATAATCCCCA+TGG | + | chr5_2:1356853-1356872 | Msa0748210:intron | 20.0% |
| !! | GGACAAAAATAAAATCAAAT+GGG | - | chr5_2:1357119-1357138 | None:intergenic | 20.0% |
| !!! | TATTAATTAAGGGTATGTTT+AGG | - | chr5_2:1357191-1357210 | None:intergenic | 20.0% |
| !! | CAAGTTAGTAGTATTAATTA+AGG | - | chr5_2:1357202-1357221 | None:intergenic | 20.0% |
| !! | TTTAATACACATACAAACAA+AGG | + | chr5_2:1357244-1357263 | Msa0748210:intron | 20.0% |
| !!! | TTTTTCACATTTCTTAAGAA+AGG | - | chr5_2:1357321-1357340 | None:intergenic | 20.0% |
| !! | TTATGAACATTACATGAAAT+GGG | - | chr5_2:1357391-1357410 | None:intergenic | 20.0% |
| !! | TAAAGAAATTGTTTATACCT+GGG | - | chr5_2:1356391-1356410 | None:intergenic | 20.0% |
| !! | ATAAAGAAATTGTTTATACC+TGG | - | chr5_2:1356392-1356411 | None:intergenic | 20.0% |
| !! | AAAAGTTAACGTCATATTTA+CGG | + | chr5_2:1356488-1356507 | Msa0748210:intron | 20.0% |
| !! | TAATAATTTAATAATCCCCA+TGG | + | chr5_2:1356853-1356872 | Msa0748210:intron | 20.0% |
| !! | GGACAAAAATAAAATCAAAT+GGG | - | chr5_2:1357119-1357138 | None:intergenic | 20.0% |
| !!! | TATTAATTAAGGGTATGTTT+AGG | - | chr5_2:1357191-1357210 | None:intergenic | 20.0% |
| !! | CAAGTTAGTAGTATTAATTA+AGG | - | chr5_2:1357202-1357221 | None:intergenic | 20.0% |
| !! | TTTAATACACATACAAACAA+AGG | + | chr5_2:1357244-1357263 | Msa0748210:intron | 20.0% |
| !!! | TTTTTCACATTTCTTAAGAA+AGG | - | chr5_2:1357321-1357340 | None:intergenic | 20.0% |
| !! | TTATGAACATTACATGAAAT+GGG | - | chr5_2:1357391-1357410 | None:intergenic | 20.0% |
| ! | TTTCATTTGTTTATATCTGG+TGG | - | chr5_2:1356127-1356146 | None:intergenic | 25.0% |
| ! | CTCTTTCATTTGTTTATATC+TGG | - | chr5_2:1356130-1356149 | None:intergenic | 25.0% |
| !!! | TTTGATTTGTCCATAATCAA+TGG | + | chr5_2:1356363-1356382 | Msa0748210:CDS | 25.0% |
| ! | AAAGAAATTGTTTATACCTG+GGG | - | chr5_2:1356390-1356409 | None:intergenic | 25.0% |
| !!! | TAGTTGATAAGCATTAAGTT+TGG | - | chr5_2:1356644-1356663 | None:intergenic | 25.0% |
| ! | ATAATCTGATTGTCTAGATT+CGG | - | chr5_2:1356746-1356765 | None:intergenic | 25.0% |
| ! | GTCTTTGGTTAAAATCATTT+AGG | + | chr5_2:1356925-1356944 | Msa0748210:intron | 25.0% |
| ! | CAAAAATAAAATCAAATGGG+TGG | - | chr5_2:1357116-1357135 | None:intergenic | 25.0% |
| ! | GGGACAAAAATAAAATCAAA+TGG | - | chr5_2:1357120-1357139 | None:intergenic | 25.0% |
| ! | TGCATCTAGTAATTTGAAAA+GGG | - | chr5_2:1357154-1357173 | None:intergenic | 25.0% |
| ! | ATGCATCTAGTAATTTGAAA+AGG | - | chr5_2:1357155-1357174 | None:intergenic | 25.0% |
| ! | AAGAAATGTGAAAAATGCAA+AGG | + | chr5_2:1357326-1357345 | Msa0748210:intron | 25.0% |
| ! | AGAAATGTGAAAAATGCAAA+GGG | + | chr5_2:1357327-1357346 | Msa0748210:intron | 25.0% |
| ! | GTTATGAACATTACATGAAA+TGG | - | chr5_2:1357392-1357411 | None:intergenic | 25.0% |
| ! | ACTACCACTAAAATAAATTG+TGG | + | chr5_2:1357440-1357459 | Msa0748210:intron | 25.0% |
| !!! | ACAACCACAATTTATTTTAG+TGG | - | chr5_2:1357447-1357466 | None:intergenic | 25.0% |
| ! | TCAAAACTTTCTTTGGTTAA+AGG | - | chr5_2:1357601-1357620 | None:intergenic | 25.0% |
| ! | TTTCATTTGTTTATATCTGG+TGG | - | chr5_2:1356127-1356146 | None:intergenic | 25.0% |
| ! | CTCTTTCATTTGTTTATATC+TGG | - | chr5_2:1356130-1356149 | None:intergenic | 25.0% |
| !!! | TTTGATTTGTCCATAATCAA+TGG | + | chr5_2:1356363-1356382 | Msa0748210:CDS | 25.0% |
| ! | AAAGAAATTGTTTATACCTG+GGG | - | chr5_2:1356390-1356409 | None:intergenic | 25.0% |
| !!! | TAGTTGATAAGCATTAAGTT+TGG | - | chr5_2:1356644-1356663 | None:intergenic | 25.0% |
| ! | ATAATCTGATTGTCTAGATT+CGG | - | chr5_2:1356746-1356765 | None:intergenic | 25.0% |
| ! | GTCTTTGGTTAAAATCATTT+AGG | + | chr5_2:1356925-1356944 | Msa0748210:intron | 25.0% |
| ! | CAAAAATAAAATCAAATGGG+TGG | - | chr5_2:1357116-1357135 | None:intergenic | 25.0% |
| ! | GGGACAAAAATAAAATCAAA+TGG | - | chr5_2:1357120-1357139 | None:intergenic | 25.0% |
| ! | TGCATCTAGTAATTTGAAAA+GGG | - | chr5_2:1357154-1357173 | None:intergenic | 25.0% |
| ! | ATGCATCTAGTAATTTGAAA+AGG | - | chr5_2:1357155-1357174 | None:intergenic | 25.0% |
| ! | AAGAAATGTGAAAAATGCAA+AGG | + | chr5_2:1357326-1357345 | Msa0748210:intron | 25.0% |
| ! | AGAAATGTGAAAAATGCAAA+GGG | + | chr5_2:1357327-1357346 | Msa0748210:intron | 25.0% |
| ! | GTTATGAACATTACATGAAA+TGG | - | chr5_2:1357392-1357411 | None:intergenic | 25.0% |
| ! | ACTACCACTAAAATAAATTG+TGG | + | chr5_2:1357440-1357459 | Msa0748210:intron | 25.0% |
| !!! | ACAACCACAATTTATTTTAG+TGG | - | chr5_2:1357447-1357466 | None:intergenic | 25.0% |
| ! | TCAAAACTTTCTTTGGTTAA+AGG | - | chr5_2:1357601-1357620 | None:intergenic | 25.0% |
| ATCAATGCATTGCTAATAGA+TGG | + | chr5_2:1356207-1356226 | Msa0748210:CDS | 30.0% | |
| CATCAAATGCTTGAATCAAT+AGG | + | chr5_2:1356255-1356274 | Msa0748210:CDS | 30.0% | |
| ! | GCAATCCATATTTTATTGAC+TGG | + | chr5_2:1356312-1356331 | Msa0748210:CDS | 30.0% |
| TAGCACCAGTCAATAAAATA+TGG | - | chr5_2:1356320-1356339 | None:intergenic | 30.0% | |
| !! | AAAATGAGTTGATAGCTACA+TGG | + | chr5_2:1356453-1356472 | Msa0748210:intron | 30.0% |
| !! | TTTTAAGCGAACTTTGAGTT+GGG | - | chr5_2:1356546-1356565 | None:intergenic | 30.0% |
| !! | TTTTTAAGCGAACTTTGAGT+TGG | - | chr5_2:1356547-1356566 | None:intergenic | 30.0% |
| CATTAAGTTTGGATCTAGAT+AGG | - | chr5_2:1356633-1356652 | None:intergenic | 30.0% | |
| ! | TCTCTCTTTTAATCTAAGTC+TGG | + | chr5_2:1356780-1356799 | Msa0748210:intron | 30.0% |
| !!! | GCTTTTTTTGTTGCTTCAAT+TGG | + | chr5_2:1356984-1357003 | Msa0748210:intron | 30.0% |
| CCTACAATCTAACTAACTTA+AGG | - | chr5_2:1357038-1357057 | None:intergenic | 30.0% | |
| CCTTAAGTTAGTTAGATTGT+AGG | + | chr5_2:1357035-1357054 | Msa0748210:intron | 30.0% | |
| CATCTAGTAATTTGAAAAGG+GGG | - | chr5_2:1357152-1357171 | None:intergenic | 30.0% | |
| GCATCTAGTAATTTGAAAAG+GGG | - | chr5_2:1357153-1357172 | None:intergenic | 30.0% | |
| GAAATGTGAAAAATGCAAAG+GGG | + | chr5_2:1357328-1357347 | Msa0748210:intron | 30.0% | |
| AAATGTGAAAAATGCAAAGG+GGG | + | chr5_2:1357329-1357348 | Msa0748210:intron | 30.0% | |
| ! | GTGGTTGTATTTTATGTAGT+TGG | + | chr5_2:1357459-1357478 | Msa0748210:intron | 30.0% |
| ! | CTTTCTTTGGTTAAAGGTTT+TGG | - | chr5_2:1357595-1357614 | None:intergenic | 30.0% |
| !!! | AACCAAAGAAAGTTTTGAAC+TGG | + | chr5_2:1357603-1357622 | Msa0748210:CDS | 30.0% |
| ATCAATGCATTGCTAATAGA+TGG | + | chr5_2:1356207-1356226 | Msa0748210:CDS | 30.0% | |
| CATCAAATGCTTGAATCAAT+AGG | + | chr5_2:1356255-1356274 | Msa0748210:CDS | 30.0% | |
| ! | GCAATCCATATTTTATTGAC+TGG | + | chr5_2:1356312-1356331 | Msa0748210:CDS | 30.0% |
| TAGCACCAGTCAATAAAATA+TGG | - | chr5_2:1356320-1356339 | None:intergenic | 30.0% | |
| !! | AAAATGAGTTGATAGCTACA+TGG | + | chr5_2:1356453-1356472 | Msa0748210:intron | 30.0% |
| !! | TTTTAAGCGAACTTTGAGTT+GGG | - | chr5_2:1356546-1356565 | None:intergenic | 30.0% |
| !! | TTTTTAAGCGAACTTTGAGT+TGG | - | chr5_2:1356547-1356566 | None:intergenic | 30.0% |
| CATTAAGTTTGGATCTAGAT+AGG | - | chr5_2:1356633-1356652 | None:intergenic | 30.0% | |
| ! | TCTCTCTTTTAATCTAAGTC+TGG | + | chr5_2:1356780-1356799 | Msa0748210:intron | 30.0% |
| !!! | GCTTTTTTTGTTGCTTCAAT+TGG | + | chr5_2:1356984-1357003 | Msa0748210:intron | 30.0% |
| CCTACAATCTAACTAACTTA+AGG | - | chr5_2:1357038-1357057 | None:intergenic | 30.0% | |
| CCTTAAGTTAGTTAGATTGT+AGG | + | chr5_2:1357035-1357054 | Msa0748210:intron | 30.0% | |
| CATCTAGTAATTTGAAAAGG+GGG | - | chr5_2:1357152-1357171 | None:intergenic | 30.0% | |
| GCATCTAGTAATTTGAAAAG+GGG | - | chr5_2:1357153-1357172 | None:intergenic | 30.0% | |
| GAAATGTGAAAAATGCAAAG+GGG | + | chr5_2:1357328-1357347 | Msa0748210:intron | 30.0% | |
| AAATGTGAAAAATGCAAAGG+GGG | + | chr5_2:1357329-1357348 | Msa0748210:intron | 30.0% | |
| ! | GTGGTTGTATTTTATGTAGT+TGG | + | chr5_2:1357459-1357478 | Msa0748210:intron | 30.0% |
| ! | CTTTCTTTGGTTAAAGGTTT+TGG | - | chr5_2:1357595-1357614 | None:intergenic | 30.0% |
| !!! | AACCAAAGAAAGTTTTGAAC+TGG | + | chr5_2:1357603-1357622 | Msa0748210:CDS | 30.0% |
| ! | ATTCGCATTTTCTTCTCATC+AGG | - | chr5_2:1356153-1356172 | None:intergenic | 35.0% |
| ! | AGCAATGCATTGATGAGATA+AGG | - | chr5_2:1356201-1356220 | None:intergenic | 35.0% |
| AGTTAACGTCATATTTACGG+TGG | + | chr5_2:1356491-1356510 | Msa0748210:intron | 35.0% | |
| TCATATTTACGGTGGATCTT+GGG | + | chr5_2:1356499-1356518 | Msa0748210:intron | 35.0% | |
| !! | TTTAAGCGAACTTTGAGTTG+GGG | - | chr5_2:1356545-1356564 | None:intergenic | 35.0% |
| ! | CAATACGAGGATGTTTCTAA+TGG | - | chr5_2:1356588-1356607 | None:intergenic | 35.0% |
| TAGAAACATCCTCGTATTGA+CGG | + | chr5_2:1356589-1356608 | Msa0748210:intron | 35.0% | |
| !! | TCAACTAAGCTGATTTTCGT+TGG | + | chr5_2:1356657-1356676 | Msa0748210:intron | 35.0% |
| TTTCGCTCATGTATGATTGT+AGG | - | chr5_2:1356692-1356711 | None:intergenic | 35.0% | |
| ! | TTTTAACCAAAGACCTAGAG+AGG | - | chr5_2:1356919-1356938 | None:intergenic | 35.0% |
| CAAATGGGTGGTTACATTAA+GGG | - | chr5_2:1357104-1357123 | None:intergenic | 35.0% | |
| TCAAATGGGTGGTTACATTA+AGG | - | chr5_2:1357105-1357124 | None:intergenic | 35.0% | |
| TGAAAAGGGGGTTACATTTA+GGG | - | chr5_2:1357140-1357159 | None:intergenic | 35.0% | |
| TTGAAAAGGGGGTTACATTT+AGG | - | chr5_2:1357141-1357160 | None:intergenic | 35.0% | |
| AATGTGAAAAATGCAAAGGG+GGG | + | chr5_2:1357330-1357349 | Msa0748210:intron | 35.0% | |
| GACCAGTTCAAAACTTTCTT+TGG | - | chr5_2:1357608-1357627 | None:intergenic | 35.0% | |
| !!! | GAAAGTTTTGAACTGGTCAT+TGG | + | chr5_2:1357610-1357629 | Msa0748210:CDS | 35.0% |
| ! | ATTCGCATTTTCTTCTCATC+AGG | - | chr5_2:1356153-1356172 | None:intergenic | 35.0% |
| ! | AGCAATGCATTGATGAGATA+AGG | - | chr5_2:1356201-1356220 | None:intergenic | 35.0% |
| AGTTAACGTCATATTTACGG+TGG | + | chr5_2:1356491-1356510 | Msa0748210:intron | 35.0% | |
| TCATATTTACGGTGGATCTT+GGG | + | chr5_2:1356499-1356518 | Msa0748210:intron | 35.0% | |
| !! | TTTAAGCGAACTTTGAGTTG+GGG | - | chr5_2:1356545-1356564 | None:intergenic | 35.0% |
| ! | CAATACGAGGATGTTTCTAA+TGG | - | chr5_2:1356588-1356607 | None:intergenic | 35.0% |
| TAGAAACATCCTCGTATTGA+CGG | + | chr5_2:1356589-1356608 | Msa0748210:intron | 35.0% | |
| !! | TCAACTAAGCTGATTTTCGT+TGG | + | chr5_2:1356657-1356676 | Msa0748210:intron | 35.0% |
| TTTCGCTCATGTATGATTGT+AGG | - | chr5_2:1356692-1356711 | None:intergenic | 35.0% | |
| ! | TTTTAACCAAAGACCTAGAG+AGG | - | chr5_2:1356919-1356938 | None:intergenic | 35.0% |
| CAAATGGGTGGTTACATTAA+GGG | - | chr5_2:1357104-1357123 | None:intergenic | 35.0% | |
| TCAAATGGGTGGTTACATTA+AGG | - | chr5_2:1357105-1357124 | None:intergenic | 35.0% | |
| TGAAAAGGGGGTTACATTTA+GGG | - | chr5_2:1357140-1357159 | None:intergenic | 35.0% | |
| TTGAAAAGGGGGTTACATTT+AGG | - | chr5_2:1357141-1357160 | None:intergenic | 35.0% | |
| AATGTGAAAAATGCAAAGGG+GGG | + | chr5_2:1357330-1357349 | Msa0748210:intron | 35.0% | |
| GACCAGTTCAAAACTTTCTT+TGG | - | chr5_2:1357608-1357627 | None:intergenic | 35.0% | |
| !!! | GAAAGTTTTGAACTGGTCAT+TGG | + | chr5_2:1357610-1357629 | Msa0748210:CDS | 35.0% |
| GCTTCTTGAGAACTATTTGC+AGG | - | chr5_2:1356294-1356313 | None:intergenic | 40.0% | |
| GTCATATTTACGGTGGATCT+TGG | + | chr5_2:1356498-1356517 | Msa0748210:intron | 40.0% | |
| CATATTTACGGTGGATCTTG+GGG | + | chr5_2:1356500-1356519 | Msa0748210:intron | 40.0% | |
| CTTCATAAAGTCGACGACAA+AGG | - | chr5_2:1356720-1356739 | None:intergenic | 40.0% | |
| ACACCATCAGATCAATCCAT+GGG | - | chr5_2:1356872-1356891 | None:intergenic | 40.0% | |
| TACACCATCAGATCAATCCA+TGG | - | chr5_2:1356873-1356892 | None:intergenic | 40.0% | |
| ! | TTGATCTGATGGTGTAGACT+TGG | + | chr5_2:1356877-1356896 | Msa0748210:intron | 40.0% |
| ! | TGATCTGATGGTGTAGACTT+GGG | + | chr5_2:1356878-1356897 | Msa0748210:intron | 40.0% |
| CTAGAGAGGAGTAAATACCT+AGG | - | chr5_2:1356905-1356924 | None:intergenic | 40.0% | |
| CTAGGTATTTACTCCTCTCT+AGG | + | chr5_2:1356903-1356922 | Msa0748210:intron | 40.0% | |
| TTTACTCCTCTCTAGGTCTT+TGG | + | chr5_2:1356910-1356929 | Msa0748210:intron | 40.0% | |
| TTAGGTGCCTACAATTCATG+TGG | + | chr5_2:1356943-1356962 | Msa0748210:intron | 40.0% | |
| ATGTCCACCACATGAATTGT+AGG | - | chr5_2:1356953-1356972 | None:intergenic | 40.0% | |
| CCGATCTCATCATCAATTAG+CGG | - | chr5_2:1357014-1357033 | None:intergenic | 40.0% | |
| !! | CCGCTAATTGATGATGAGAT+CGG | + | chr5_2:1357011-1357030 | Msa0748210:intron | 40.0% |
| !!! | GGTTAAAGGTTTTGGAACAC+TGG | - | chr5_2:1357587-1357606 | None:intergenic | 40.0% |
| GCTTCTTGAGAACTATTTGC+AGG | - | chr5_2:1356294-1356313 | None:intergenic | 40.0% | |
| GTCATATTTACGGTGGATCT+TGG | + | chr5_2:1356498-1356517 | Msa0748210:intron | 40.0% | |
| CATATTTACGGTGGATCTTG+GGG | + | chr5_2:1356500-1356519 | Msa0748210:intron | 40.0% | |
| CTTCATAAAGTCGACGACAA+AGG | - | chr5_2:1356720-1356739 | None:intergenic | 40.0% | |
| ACACCATCAGATCAATCCAT+GGG | - | chr5_2:1356872-1356891 | None:intergenic | 40.0% | |
| TACACCATCAGATCAATCCA+TGG | - | chr5_2:1356873-1356892 | None:intergenic | 40.0% | |
| ! | TTGATCTGATGGTGTAGACT+TGG | + | chr5_2:1356877-1356896 | Msa0748210:intron | 40.0% |
| ! | TGATCTGATGGTGTAGACTT+GGG | + | chr5_2:1356878-1356897 | Msa0748210:intron | 40.0% |
| CTAGAGAGGAGTAAATACCT+AGG | - | chr5_2:1356905-1356924 | None:intergenic | 40.0% | |
| CTAGGTATTTACTCCTCTCT+AGG | + | chr5_2:1356903-1356922 | Msa0748210:intron | 40.0% | |
| TTTACTCCTCTCTAGGTCTT+TGG | + | chr5_2:1356910-1356929 | Msa0748210:intron | 40.0% | |
| TTAGGTGCCTACAATTCATG+TGG | + | chr5_2:1356943-1356962 | Msa0748210:intron | 40.0% | |
| ATGTCCACCACATGAATTGT+AGG | - | chr5_2:1356953-1356972 | None:intergenic | 40.0% | |
| CCGATCTCATCATCAATTAG+CGG | - | chr5_2:1357014-1357033 | None:intergenic | 40.0% | |
| !! | CCGCTAATTGATGATGAGAT+CGG | + | chr5_2:1357011-1357030 | Msa0748210:intron | 40.0% |
| !!! | GGTTAAAGGTTTTGGAACAC+TGG | - | chr5_2:1357587-1357606 | None:intergenic | 40.0% |
| ! | TACCTGGGGTCCATTGATTA+TGG | - | chr5_2:1356376-1356395 | None:intergenic | 45.0% |
| ! | AAACATCCTCGTATTGACGG+TGG | + | chr5_2:1356592-1356611 | Msa0748210:intron | 45.0% |
| ! | AACATCCTCGTATTGACGGT+GGG | + | chr5_2:1356593-1356612 | Msa0748210:intron | 45.0% |
| ! | ATCCCCATGGATTGATCTGA+TGG | + | chr5_2:1356866-1356885 | Msa0748210:intron | 45.0% |
| CACCATCAGATCAATCCATG+GGG | - | chr5_2:1356871-1356890 | None:intergenic | 45.0% | |
| !! | GTGGTGGACATGTTCATACA+AGG | + | chr5_2:1356962-1356981 | Msa0748210:intron | 45.0% |
| TGGTTACATTAAGGGACGGA+GGG | - | chr5_2:1357096-1357115 | None:intergenic | 45.0% | |
| TGGGTGGTTACATTAAGGGA+CGG | - | chr5_2:1357100-1357119 | None:intergenic | 45.0% | |
| TGCAAAGGGGGGTTACATTA+AGG | + | chr5_2:1357341-1357360 | Msa0748210:intron | 45.0% | |
| GCAAAGGGGGGTTACATTAA+GGG | + | chr5_2:1357342-1357361 | Msa0748210:intron | 45.0% | |
| AATGGGGATACAGAGCAAGA+TGG | + | chr5_2:1357498-1357517 | Msa0748210:CDS | 45.0% | |
| ! | TACCTGGGGTCCATTGATTA+TGG | - | chr5_2:1356376-1356395 | None:intergenic | 45.0% |
| ! | AAACATCCTCGTATTGACGG+TGG | + | chr5_2:1356592-1356611 | Msa0748210:intron | 45.0% |
| ! | AACATCCTCGTATTGACGGT+GGG | + | chr5_2:1356593-1356612 | Msa0748210:intron | 45.0% |
| ! | ATCCCCATGGATTGATCTGA+TGG | + | chr5_2:1356866-1356885 | Msa0748210:intron | 45.0% |
| CACCATCAGATCAATCCATG+GGG | - | chr5_2:1356871-1356890 | None:intergenic | 45.0% | |
| !! | GTGGTGGACATGTTCATACA+AGG | + | chr5_2:1356962-1356981 | Msa0748210:intron | 45.0% |
| TGGTTACATTAAGGGACGGA+GGG | - | chr5_2:1357096-1357115 | None:intergenic | 45.0% | |
| TGGGTGGTTACATTAAGGGA+CGG | - | chr5_2:1357100-1357119 | None:intergenic | 45.0% | |
| TGCAAAGGGGGGTTACATTA+AGG | + | chr5_2:1357341-1357360 | Msa0748210:intron | 45.0% | |
| GCAAAGGGGGGTTACATTAA+GGG | + | chr5_2:1357342-1357361 | Msa0748210:intron | 45.0% | |
| AATGGGGATACAGAGCAAGA+TGG | + | chr5_2:1357498-1357517 | Msa0748210:CDS | 45.0% | |
| GTCCATAATCAATGGACCCC+AGG | + | chr5_2:1356371-1356390 | Msa0748210:CDS | 50.0% | |
| CAAAACCCACCGTCAATACG+AGG | - | chr5_2:1356601-1356620 | None:intergenic | 50.0% | |
| ATGGTGTAGACTTGGGACCT+AGG | + | chr5_2:1356885-1356904 | Msa0748210:intron | 50.0% | |
| GGTGCCTACAATTCATGTGG+TGG | + | chr5_2:1356946-1356965 | Msa0748210:intron | 50.0% | |
| GTGGTTACATTAAGGGACGG+AGG | - | chr5_2:1357097-1357116 | None:intergenic | 50.0% | |
| AGGGGGGTTACATTAAGGGA+CGG | + | chr5_2:1357346-1357365 | Msa0748210:intron | 50.0% | |
| GGGTTACATTAAGGGACGGA+GGG | + | chr5_2:1357350-1357369 | Msa0748210:intron | 50.0% | |
| GTGAGACAGATGCGTGCAAT+GGG | + | chr5_2:1357481-1357500 | Msa0748210:CDS | 50.0% | |
| TGAGACAGATGCGTGCAATG+GGG | + | chr5_2:1357482-1357501 | Msa0748210:CDS | 50.0% | |
| GGGATACAGAGCAAGATGGT+CGG | + | chr5_2:1357502-1357521 | Msa0748210:CDS | 50.0% | |
| GTCCATAATCAATGGACCCC+AGG | + | chr5_2:1356371-1356390 | Msa0748210:CDS | 50.0% | |
| CAAAACCCACCGTCAATACG+AGG | - | chr5_2:1356601-1356620 | None:intergenic | 50.0% | |
| ATGGTGTAGACTTGGGACCT+AGG | + | chr5_2:1356885-1356904 | Msa0748210:intron | 50.0% | |
| GGTGCCTACAATTCATGTGG+TGG | + | chr5_2:1356946-1356965 | Msa0748210:intron | 50.0% | |
| GTGGTTACATTAAGGGACGG+AGG | - | chr5_2:1357097-1357116 | None:intergenic | 50.0% | |
| AGGGGGGTTACATTAAGGGA+CGG | + | chr5_2:1357346-1357365 | Msa0748210:intron | 50.0% | |
| GGGTTACATTAAGGGACGGA+GGG | + | chr5_2:1357350-1357369 | Msa0748210:intron | 50.0% | |
| GTGAGACAGATGCGTGCAAT+GGG | + | chr5_2:1357481-1357500 | Msa0748210:CDS | 50.0% | |
| TGAGACAGATGCGTGCAATG+GGG | + | chr5_2:1357482-1357501 | Msa0748210:CDS | 50.0% | |
| GGGATACAGAGCAAGATGGT+CGG | + | chr5_2:1357502-1357521 | Msa0748210:CDS | 50.0% | |
| TGAGACTGCAACGAGACGCT+TGG | + | chr5_2:1356230-1356249 | Msa0748210:CDS | 55.0% | |
| GGGGTTACATTAAGGGACGG+AGG | + | chr5_2:1357349-1357368 | Msa0748210:intron | 55.0% | |
| GGTGAGACAGATGCGTGCAA+TGG | + | chr5_2:1357480-1357499 | Msa0748210:CDS | 55.0% | |
| TGAGACTGCAACGAGACGCT+TGG | + | chr5_2:1356230-1356249 | Msa0748210:CDS | 55.0% | |
| GGGGTTACATTAAGGGACGG+AGG | + | chr5_2:1357349-1357368 | Msa0748210:intron | 55.0% | |
| GGTGAGACAGATGCGTGCAA+TGG | + | chr5_2:1357480-1357499 | Msa0748210:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 1356111 | 1357651 | 1356111 | ID=Msa0748210;Name=Msa0748210 |
| chr5_2 | mRNA | 1356111 | 1357651 | 1356111 | ID=Msa0748210-mRNA-1;Parent=Msa0748210;Name=Msa0748210-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|0|0|1|1|1|2|0|151 |
| chr5_2 | exon | 1356111 | 1356392 | 1356111 | ID=Msa0748210-mRNA-1:exon:323;Parent=Msa0748210-mRNA-1 |
| chr5_2 | exon | 1357478 | 1357651 | 1357478 | ID=Msa0748210-mRNA-1:exon:324;Parent=Msa0748210-mRNA-1 |
| chr5_2 | CDS | 1356111 | 1356392 | 1356111 | ID=Msa0748210-mRNA-1:cds;Parent=Msa0748210-mRNA-1 |
| chr5_2 | CDS | 1357478 | 1357651 | 1357478 | ID=Msa0748210-mRNA-1:cds;Parent=Msa0748210-mRNA-1 |
| Gene Sequence |
| Protein sequence |
