Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1073030 | XP_003607052.1 | 78.523 | 149 | 32 | 0 | 1 | 149 | 1 | 149 | 8.52e-81 | 245 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1073030 | sp|F4JZT3|ARR24_ARATH | 32.381 | 105 | 71 | 0 | 33 | 137 | 18 | 122 | 1.35e-15 | 72.0 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1073030 | G7JJU6 | 78.523 | 149 | 32 | 0 | 1 | 149 | 1 | 149 | 4.07e-81 | 245 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1073030 | TR | Others |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0748210 | Msa1073030 | 0.948630 | 6.441427e-107 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1073030 | MtrunA17_Chr6g0451941 | 78.523 | 149 | 32 | 0 | 1 | 149 | 1 | 149 | 7.84e-85 | 245 |
| Msa1073030 | MtrunA17_Chr8g0364781 | 31.304 | 115 | 77 | 1 | 33 | 145 | 12 | 126 | 8.60e-15 | 67.0 |
| Msa1073030 | MtrunA17_Chr7g0262351 | 30.973 | 113 | 77 | 1 | 25 | 137 | 14 | 125 | 1.22e-14 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1073030 | AT5G26594.1 | 32.381 | 105 | 71 | 0 | 33 | 137 | 18 | 122 | 1.37e-16 | 72.0 |
Find 22 sgRNAs with CRISPR-Local
Find 208 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAAAACTTTCTTTGGTTAA+AGG | 0.152490 | 7_2:+70344480 | None:intergenic |
| CTTTCTTTGGTTAAAGGTTT+TGG | 0.180470 | 7_2:+70344486 | None:intergenic |
| CTCTTTCATTTGTTTATATC+TGG | 0.180960 | 7_2:+70345951 | None:intergenic |
| TACCTGGGGTCCATTGATTA+TGG | 0.224477 | 7_2:+70345705 | None:intergenic |
| GACCAGTTCAAAACTTTCTT+TGG | 0.249411 | 7_2:+70344473 | None:intergenic |
| TAGCACCAGTCAATAAAATA+TGG | 0.283273 | 7_2:+70345761 | None:intergenic |
| GCTTCTTGAGAACTATTTGC+AGG | 0.359227 | 7_2:+70345787 | None:intergenic |
| ATCAATGCATTGCTAATAGA+TGG | 0.376367 | 7_2:-70345871 | Msa1073030:CDS |
| CATCAAATGCTTGAATCAAT+AGG | 0.381106 | 7_2:-70345823 | Msa1073030:CDS |
| TTTGATTTGTCCATAATCAA+TGG | 0.400791 | 7_2:-70345715 | Msa1073030:CDS |
| TTTCATTTGTTTATATCTGG+TGG | 0.469134 | 7_2:+70345954 | None:intergenic |
| GTGAGACAGATGCGTGCAAT+GGG | 0.473335 | 7_2:-70344597 | Msa1073030:CDS |
| AACATGAAATTCATGTGTAT+CGG | 0.526904 | 7_2:+70344439 | None:intergenic |
| AGCAATGCATTGATGAGATA+AGG | 0.528514 | 7_2:+70345880 | None:intergenic |
| TGAGACTGCAACGAGACGCT+TGG | 0.539108 | 7_2:-70345848 | Msa1073030:CDS |
| GTCCATAATCAATGGACCCC+AGG | 0.541606 | 7_2:-70345707 | Msa1073030:intron |
| ATTGCACATACAATGGATGC+AGG | 0.592854 | 7_2:-70345979 | None:intergenic |
| ATGAAATTCATGTGTATCGG+AGG | 0.606494 | 7_2:+70344442 | None:intergenic |
| GGTGAGACAGATGCGTGCAA+TGG | 0.623881 | 7_2:-70344598 | Msa1073030:CDS |
| GGGATACAGAGCAAGATGGT+CGG | 0.640760 | 7_2:-70344576 | Msa1073030:CDS |
| AATGGGGATACAGAGCAAGA+TGG | 0.668118 | 7_2:-70344580 | Msa1073030:CDS |
| TGAGACAGATGCGTGCAATG+GGG | 0.812421 | 7_2:-70344596 | Msa1073030:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGTTAGTAGTATTAATTAA+GGG | + | chr7_2:70345539-70345558 | None:intergenic | 15.0% |
| !! | AAGTTAGTAGTATTAATTAA+GGG | + | chr7_2:70345539-70345558 | None:intergenic | 15.0% |
| !! | TAAAGAAATTGTTTATACCT+GGG | + | chr7_2:70344729-70344748 | None:intergenic | 20.0% |
| !! | ATAAAGAAATTGTTTATACC+TGG | + | chr7_2:70344730-70344749 | None:intergenic | 20.0% |
| !! | AAAAGTTAACGTCATATTTA+CGG | - | chr7_2:70344826-70344845 | Msa1073030:intron | 20.0% |
| !! | TAATAATTTAATAATCCCCA+TGG | - | chr7_2:70345191-70345210 | Msa1073030:intron | 20.0% |
| !! | GGACAAAAATAAAATCAAAT+GGG | + | chr7_2:70345457-70345476 | None:intergenic | 20.0% |
| !!! | TATTAATTAAGGGTATGTTT+AGG | + | chr7_2:70345529-70345548 | None:intergenic | 20.0% |
| !! | CAAGTTAGTAGTATTAATTA+AGG | + | chr7_2:70345540-70345559 | None:intergenic | 20.0% |
| !! | TTTAATACACATACAAACAA+AGG | - | chr7_2:70345582-70345601 | Msa1073030:intron | 20.0% |
| !!! | TTTTTCACATTTCTTAAGAA+AGG | + | chr7_2:70345659-70345678 | None:intergenic | 20.0% |
| !! | TTATGAACATTACATGAAAT+GGG | + | chr7_2:70345729-70345748 | None:intergenic | 20.0% |
| !! | TAAAGAAATTGTTTATACCT+GGG | + | chr7_2:70344729-70344748 | None:intergenic | 20.0% |
| !! | ATAAAGAAATTGTTTATACC+TGG | + | chr7_2:70344730-70344749 | None:intergenic | 20.0% |
| !! | AAAAGTTAACGTCATATTTA+CGG | - | chr7_2:70344826-70344845 | Msa1073030:intron | 20.0% |
| !! | TAATAATTTAATAATCCCCA+TGG | - | chr7_2:70345191-70345210 | Msa1073030:intron | 20.0% |
| !! | GGACAAAAATAAAATCAAAT+GGG | + | chr7_2:70345457-70345476 | None:intergenic | 20.0% |
| !!! | TATTAATTAAGGGTATGTTT+AGG | + | chr7_2:70345529-70345548 | None:intergenic | 20.0% |
| !! | CAAGTTAGTAGTATTAATTA+AGG | + | chr7_2:70345540-70345559 | None:intergenic | 20.0% |
| !! | TTTAATACACATACAAACAA+AGG | - | chr7_2:70345582-70345601 | Msa1073030:intron | 20.0% |
| !!! | TTTTTCACATTTCTTAAGAA+AGG | + | chr7_2:70345659-70345678 | None:intergenic | 20.0% |
| !! | TTATGAACATTACATGAAAT+GGG | + | chr7_2:70345729-70345748 | None:intergenic | 20.0% |
| ! | TTTCATTTGTTTATATCTGG+TGG | + | chr7_2:70344465-70344484 | None:intergenic | 25.0% |
| ! | CTCTTTCATTTGTTTATATC+TGG | + | chr7_2:70344468-70344487 | None:intergenic | 25.0% |
| !!! | TTTGATTTGTCCATAATCAA+TGG | - | chr7_2:70344701-70344720 | Msa1073030:intron | 25.0% |
| ! | AAAGAAATTGTTTATACCTG+GGG | + | chr7_2:70344728-70344747 | None:intergenic | 25.0% |
| !!! | TAGTTGATAAGCATTAAGTT+TGG | + | chr7_2:70344982-70345001 | None:intergenic | 25.0% |
| ! | ATAATCTGATTGTCTAGATT+CGG | + | chr7_2:70345084-70345103 | None:intergenic | 25.0% |
| ! | GTCTTTGGTTAAAATCATTT+AGG | - | chr7_2:70345263-70345282 | Msa1073030:intron | 25.0% |
| ! | CAAAAATAAAATCAAATGGG+TGG | + | chr7_2:70345454-70345473 | None:intergenic | 25.0% |
| ! | GGGACAAAAATAAAATCAAA+TGG | + | chr7_2:70345458-70345477 | None:intergenic | 25.0% |
| ! | TGCATCTAGTAATTTGAAAA+GGG | + | chr7_2:70345492-70345511 | None:intergenic | 25.0% |
| ! | ATGCATCTAGTAATTTGAAA+AGG | + | chr7_2:70345493-70345512 | None:intergenic | 25.0% |
| ! | AAGAAATGTGAAAAATGCAA+AGG | - | chr7_2:70345664-70345683 | Msa1073030:intron | 25.0% |
| ! | AGAAATGTGAAAAATGCAAA+GGG | - | chr7_2:70345665-70345684 | Msa1073030:intron | 25.0% |
| ! | GTTATGAACATTACATGAAA+TGG | + | chr7_2:70345730-70345749 | None:intergenic | 25.0% |
| ! | ACTACCACTAAAATAAATTG+TGG | - | chr7_2:70345778-70345797 | Msa1073030:CDS | 25.0% |
| !!! | ACAACCACAATTTATTTTAG+TGG | + | chr7_2:70345785-70345804 | None:intergenic | 25.0% |
| ! | TCAAAACTTTCTTTGGTTAA+AGG | + | chr7_2:70345939-70345958 | None:intergenic | 25.0% |
| ! | TTTCATTTGTTTATATCTGG+TGG | + | chr7_2:70344465-70344484 | None:intergenic | 25.0% |
| ! | CTCTTTCATTTGTTTATATC+TGG | + | chr7_2:70344468-70344487 | None:intergenic | 25.0% |
| !!! | TTTGATTTGTCCATAATCAA+TGG | - | chr7_2:70344701-70344720 | Msa1073030:intron | 25.0% |
| ! | AAAGAAATTGTTTATACCTG+GGG | + | chr7_2:70344728-70344747 | None:intergenic | 25.0% |
| !!! | TAGTTGATAAGCATTAAGTT+TGG | + | chr7_2:70344982-70345001 | None:intergenic | 25.0% |
| ! | ATAATCTGATTGTCTAGATT+CGG | + | chr7_2:70345084-70345103 | None:intergenic | 25.0% |
| ! | GTCTTTGGTTAAAATCATTT+AGG | - | chr7_2:70345263-70345282 | Msa1073030:intron | 25.0% |
| ! | CAAAAATAAAATCAAATGGG+TGG | + | chr7_2:70345454-70345473 | None:intergenic | 25.0% |
| ! | GGGACAAAAATAAAATCAAA+TGG | + | chr7_2:70345458-70345477 | None:intergenic | 25.0% |
| ! | TGCATCTAGTAATTTGAAAA+GGG | + | chr7_2:70345492-70345511 | None:intergenic | 25.0% |
| ! | ATGCATCTAGTAATTTGAAA+AGG | + | chr7_2:70345493-70345512 | None:intergenic | 25.0% |
| ! | AAGAAATGTGAAAAATGCAA+AGG | - | chr7_2:70345664-70345683 | Msa1073030:intron | 25.0% |
| ! | AGAAATGTGAAAAATGCAAA+GGG | - | chr7_2:70345665-70345684 | Msa1073030:intron | 25.0% |
| ! | GTTATGAACATTACATGAAA+TGG | + | chr7_2:70345730-70345749 | None:intergenic | 25.0% |
| ! | ACTACCACTAAAATAAATTG+TGG | - | chr7_2:70345778-70345797 | Msa1073030:CDS | 25.0% |
| !!! | ACAACCACAATTTATTTTAG+TGG | + | chr7_2:70345785-70345804 | None:intergenic | 25.0% |
| ! | TCAAAACTTTCTTTGGTTAA+AGG | + | chr7_2:70345939-70345958 | None:intergenic | 25.0% |
| ATCAATGCATTGCTAATAGA+TGG | - | chr7_2:70344545-70344564 | Msa1073030:CDS | 30.0% | |
| CATCAAATGCTTGAATCAAT+AGG | - | chr7_2:70344593-70344612 | Msa1073030:CDS | 30.0% | |
| ! | GCAATCCATATTTTATTGAC+TGG | - | chr7_2:70344650-70344669 | Msa1073030:intron | 30.0% |
| TAGCACCAGTCAATAAAATA+TGG | + | chr7_2:70344658-70344677 | None:intergenic | 30.0% | |
| !! | AAAATGAGTTGATAGCTACA+TGG | - | chr7_2:70344791-70344810 | Msa1073030:intron | 30.0% |
| !! | TTTTAAGCGAACTTTGAGTT+GGG | + | chr7_2:70344884-70344903 | None:intergenic | 30.0% |
| !! | TTTTTAAGCGAACTTTGAGT+TGG | + | chr7_2:70344885-70344904 | None:intergenic | 30.0% |
| CATTAAGTTTGGATCTAGAT+AGG | + | chr7_2:70344971-70344990 | None:intergenic | 30.0% | |
| ! | TCTCTCTTTTAATCTAAGTC+TGG | - | chr7_2:70345118-70345137 | Msa1073030:intron | 30.0% |
| !!! | GCTTTTTTTGTTGCTTCAAT+TGG | - | chr7_2:70345322-70345341 | Msa1073030:intron | 30.0% |
| CCTACAATCTAACTAACTTA+AGG | + | chr7_2:70345376-70345395 | None:intergenic | 30.0% | |
| CCTTAAGTTAGTTAGATTGT+AGG | - | chr7_2:70345373-70345392 | Msa1073030:intron | 30.0% | |
| CATCTAGTAATTTGAAAAGG+GGG | + | chr7_2:70345490-70345509 | None:intergenic | 30.0% | |
| GCATCTAGTAATTTGAAAAG+GGG | + | chr7_2:70345491-70345510 | None:intergenic | 30.0% | |
| GAAATGTGAAAAATGCAAAG+GGG | - | chr7_2:70345666-70345685 | Msa1073030:intron | 30.0% | |
| AAATGTGAAAAATGCAAAGG+GGG | - | chr7_2:70345667-70345686 | Msa1073030:intron | 30.0% | |
| ! | GTGGTTGTATTTTATGTAGT+TGG | - | chr7_2:70345797-70345816 | Msa1073030:CDS | 30.0% |
| ! | CTTTCTTTGGTTAAAGGTTT+TGG | + | chr7_2:70345933-70345952 | None:intergenic | 30.0% |
| !!! | AACCAAAGAAAGTTTTGAAC+TGG | - | chr7_2:70345941-70345960 | Msa1073030:CDS | 30.0% |
| ATCAATGCATTGCTAATAGA+TGG | - | chr7_2:70344545-70344564 | Msa1073030:CDS | 30.0% | |
| CATCAAATGCTTGAATCAAT+AGG | - | chr7_2:70344593-70344612 | Msa1073030:CDS | 30.0% | |
| ! | GCAATCCATATTTTATTGAC+TGG | - | chr7_2:70344650-70344669 | Msa1073030:intron | 30.0% |
| TAGCACCAGTCAATAAAATA+TGG | + | chr7_2:70344658-70344677 | None:intergenic | 30.0% | |
| !! | AAAATGAGTTGATAGCTACA+TGG | - | chr7_2:70344791-70344810 | Msa1073030:intron | 30.0% |
| !! | TTTTAAGCGAACTTTGAGTT+GGG | + | chr7_2:70344884-70344903 | None:intergenic | 30.0% |
| !! | TTTTTAAGCGAACTTTGAGT+TGG | + | chr7_2:70344885-70344904 | None:intergenic | 30.0% |
| CATTAAGTTTGGATCTAGAT+AGG | + | chr7_2:70344971-70344990 | None:intergenic | 30.0% | |
| ! | TCTCTCTTTTAATCTAAGTC+TGG | - | chr7_2:70345118-70345137 | Msa1073030:intron | 30.0% |
| !!! | GCTTTTTTTGTTGCTTCAAT+TGG | - | chr7_2:70345322-70345341 | Msa1073030:intron | 30.0% |
| CCTACAATCTAACTAACTTA+AGG | + | chr7_2:70345376-70345395 | None:intergenic | 30.0% | |
| CCTTAAGTTAGTTAGATTGT+AGG | - | chr7_2:70345373-70345392 | Msa1073030:intron | 30.0% | |
| CATCTAGTAATTTGAAAAGG+GGG | + | chr7_2:70345490-70345509 | None:intergenic | 30.0% | |
| GCATCTAGTAATTTGAAAAG+GGG | + | chr7_2:70345491-70345510 | None:intergenic | 30.0% | |
| GAAATGTGAAAAATGCAAAG+GGG | - | chr7_2:70345666-70345685 | Msa1073030:intron | 30.0% | |
| AAATGTGAAAAATGCAAAGG+GGG | - | chr7_2:70345667-70345686 | Msa1073030:intron | 30.0% | |
| ! | GTGGTTGTATTTTATGTAGT+TGG | - | chr7_2:70345797-70345816 | Msa1073030:CDS | 30.0% |
| ! | CTTTCTTTGGTTAAAGGTTT+TGG | + | chr7_2:70345933-70345952 | None:intergenic | 30.0% |
| !!! | AACCAAAGAAAGTTTTGAAC+TGG | - | chr7_2:70345941-70345960 | Msa1073030:CDS | 30.0% |
| ! | ATTCGCATTTTCTTCTCATC+AGG | + | chr7_2:70344491-70344510 | None:intergenic | 35.0% |
| ! | AGCAATGCATTGATGAGATA+AGG | + | chr7_2:70344539-70344558 | None:intergenic | 35.0% |
| AGTTAACGTCATATTTACGG+TGG | - | chr7_2:70344829-70344848 | Msa1073030:intron | 35.0% | |
| TCATATTTACGGTGGATCTT+GGG | - | chr7_2:70344837-70344856 | Msa1073030:intron | 35.0% | |
| !! | TTTAAGCGAACTTTGAGTTG+GGG | + | chr7_2:70344883-70344902 | None:intergenic | 35.0% |
| ! | CAATACGAGGATGTTTCTAA+TGG | + | chr7_2:70344926-70344945 | None:intergenic | 35.0% |
| TAGAAACATCCTCGTATTGA+CGG | - | chr7_2:70344927-70344946 | Msa1073030:intron | 35.0% | |
| !! | TCAACTAAGCTGATTTTCGT+TGG | - | chr7_2:70344995-70345014 | Msa1073030:intron | 35.0% |
| TTTCGCTCATGTATGATTGT+AGG | + | chr7_2:70345030-70345049 | None:intergenic | 35.0% | |
| ! | TTTTAACCAAAGACCTAGAG+AGG | + | chr7_2:70345257-70345276 | None:intergenic | 35.0% |
| CAAATGGGTGGTTACATTAA+GGG | + | chr7_2:70345442-70345461 | None:intergenic | 35.0% | |
| TCAAATGGGTGGTTACATTA+AGG | + | chr7_2:70345443-70345462 | None:intergenic | 35.0% | |
| TGAAAAGGGGGTTACATTTA+GGG | + | chr7_2:70345478-70345497 | None:intergenic | 35.0% | |
| TTGAAAAGGGGGTTACATTT+AGG | + | chr7_2:70345479-70345498 | None:intergenic | 35.0% | |
| AATGTGAAAAATGCAAAGGG+GGG | - | chr7_2:70345668-70345687 | Msa1073030:intron | 35.0% | |
| GACCAGTTCAAAACTTTCTT+TGG | + | chr7_2:70345946-70345965 | None:intergenic | 35.0% | |
| !!! | GAAAGTTTTGAACTGGTCAT+TGG | - | chr7_2:70345948-70345967 | Msa1073030:CDS | 35.0% |
| ! | ATTCGCATTTTCTTCTCATC+AGG | + | chr7_2:70344491-70344510 | None:intergenic | 35.0% |
| ! | AGCAATGCATTGATGAGATA+AGG | + | chr7_2:70344539-70344558 | None:intergenic | 35.0% |
| AGTTAACGTCATATTTACGG+TGG | - | chr7_2:70344829-70344848 | Msa1073030:intron | 35.0% | |
| TCATATTTACGGTGGATCTT+GGG | - | chr7_2:70344837-70344856 | Msa1073030:intron | 35.0% | |
| !! | TTTAAGCGAACTTTGAGTTG+GGG | + | chr7_2:70344883-70344902 | None:intergenic | 35.0% |
| ! | CAATACGAGGATGTTTCTAA+TGG | + | chr7_2:70344926-70344945 | None:intergenic | 35.0% |
| TAGAAACATCCTCGTATTGA+CGG | - | chr7_2:70344927-70344946 | Msa1073030:intron | 35.0% | |
| !! | TCAACTAAGCTGATTTTCGT+TGG | - | chr7_2:70344995-70345014 | Msa1073030:intron | 35.0% |
| TTTCGCTCATGTATGATTGT+AGG | + | chr7_2:70345030-70345049 | None:intergenic | 35.0% | |
| ! | TTTTAACCAAAGACCTAGAG+AGG | + | chr7_2:70345257-70345276 | None:intergenic | 35.0% |
| CAAATGGGTGGTTACATTAA+GGG | + | chr7_2:70345442-70345461 | None:intergenic | 35.0% | |
| TCAAATGGGTGGTTACATTA+AGG | + | chr7_2:70345443-70345462 | None:intergenic | 35.0% | |
| TGAAAAGGGGGTTACATTTA+GGG | + | chr7_2:70345478-70345497 | None:intergenic | 35.0% | |
| TTGAAAAGGGGGTTACATTT+AGG | + | chr7_2:70345479-70345498 | None:intergenic | 35.0% | |
| AATGTGAAAAATGCAAAGGG+GGG | - | chr7_2:70345668-70345687 | Msa1073030:intron | 35.0% | |
| GACCAGTTCAAAACTTTCTT+TGG | + | chr7_2:70345946-70345965 | None:intergenic | 35.0% | |
| !!! | GAAAGTTTTGAACTGGTCAT+TGG | - | chr7_2:70345948-70345967 | Msa1073030:CDS | 35.0% |
| GCTTCTTGAGAACTATTTGC+AGG | + | chr7_2:70344632-70344651 | None:intergenic | 40.0% | |
| GTCATATTTACGGTGGATCT+TGG | - | chr7_2:70344836-70344855 | Msa1073030:intron | 40.0% | |
| CATATTTACGGTGGATCTTG+GGG | - | chr7_2:70344838-70344857 | Msa1073030:intron | 40.0% | |
| CTTCATAAAGTCGACGACAA+AGG | + | chr7_2:70345058-70345077 | None:intergenic | 40.0% | |
| ACACCATCAGATCAATCCAT+GGG | + | chr7_2:70345210-70345229 | None:intergenic | 40.0% | |
| TACACCATCAGATCAATCCA+TGG | + | chr7_2:70345211-70345230 | None:intergenic | 40.0% | |
| ! | TTGATCTGATGGTGTAGACT+TGG | - | chr7_2:70345215-70345234 | Msa1073030:intron | 40.0% |
| ! | TGATCTGATGGTGTAGACTT+GGG | - | chr7_2:70345216-70345235 | Msa1073030:intron | 40.0% |
| CTAGAGAGGAGTAAATACCT+AGG | + | chr7_2:70345243-70345262 | None:intergenic | 40.0% | |
| CTAGGTATTTACTCCTCTCT+AGG | - | chr7_2:70345241-70345260 | Msa1073030:intron | 40.0% | |
| TTTACTCCTCTCTAGGTCTT+TGG | - | chr7_2:70345248-70345267 | Msa1073030:intron | 40.0% | |
| TTAGGTGCCTACAATTCATG+TGG | - | chr7_2:70345281-70345300 | Msa1073030:intron | 40.0% | |
| ATGTCCACCACATGAATTGT+AGG | + | chr7_2:70345291-70345310 | None:intergenic | 40.0% | |
| CCGATCTCATCATCAATTAG+CGG | + | chr7_2:70345352-70345371 | None:intergenic | 40.0% | |
| !! | CCGCTAATTGATGATGAGAT+CGG | - | chr7_2:70345349-70345368 | Msa1073030:intron | 40.0% |
| !!! | GGTTAAAGGTTTTGGAACAC+TGG | + | chr7_2:70345925-70345944 | None:intergenic | 40.0% |
| GCTTCTTGAGAACTATTTGC+AGG | + | chr7_2:70344632-70344651 | None:intergenic | 40.0% | |
| GTCATATTTACGGTGGATCT+TGG | - | chr7_2:70344836-70344855 | Msa1073030:intron | 40.0% | |
| CATATTTACGGTGGATCTTG+GGG | - | chr7_2:70344838-70344857 | Msa1073030:intron | 40.0% | |
| CTTCATAAAGTCGACGACAA+AGG | + | chr7_2:70345058-70345077 | None:intergenic | 40.0% | |
| ACACCATCAGATCAATCCAT+GGG | + | chr7_2:70345210-70345229 | None:intergenic | 40.0% | |
| TACACCATCAGATCAATCCA+TGG | + | chr7_2:70345211-70345230 | None:intergenic | 40.0% | |
| ! | TTGATCTGATGGTGTAGACT+TGG | - | chr7_2:70345215-70345234 | Msa1073030:intron | 40.0% |
| ! | TGATCTGATGGTGTAGACTT+GGG | - | chr7_2:70345216-70345235 | Msa1073030:intron | 40.0% |
| CTAGAGAGGAGTAAATACCT+AGG | + | chr7_2:70345243-70345262 | None:intergenic | 40.0% | |
| CTAGGTATTTACTCCTCTCT+AGG | - | chr7_2:70345241-70345260 | Msa1073030:intron | 40.0% | |
| TTTACTCCTCTCTAGGTCTT+TGG | - | chr7_2:70345248-70345267 | Msa1073030:intron | 40.0% | |
| TTAGGTGCCTACAATTCATG+TGG | - | chr7_2:70345281-70345300 | Msa1073030:intron | 40.0% | |
| ATGTCCACCACATGAATTGT+AGG | + | chr7_2:70345291-70345310 | None:intergenic | 40.0% | |
| CCGATCTCATCATCAATTAG+CGG | + | chr7_2:70345352-70345371 | None:intergenic | 40.0% | |
| !! | CCGCTAATTGATGATGAGAT+CGG | - | chr7_2:70345349-70345368 | Msa1073030:intron | 40.0% |
| !!! | GGTTAAAGGTTTTGGAACAC+TGG | + | chr7_2:70345925-70345944 | None:intergenic | 40.0% |
| ! | TACCTGGGGTCCATTGATTA+TGG | + | chr7_2:70344714-70344733 | None:intergenic | 45.0% |
| ! | AAACATCCTCGTATTGACGG+TGG | - | chr7_2:70344930-70344949 | Msa1073030:intron | 45.0% |
| ! | AACATCCTCGTATTGACGGT+GGG | - | chr7_2:70344931-70344950 | Msa1073030:intron | 45.0% |
| ! | ATCCCCATGGATTGATCTGA+TGG | - | chr7_2:70345204-70345223 | Msa1073030:intron | 45.0% |
| CACCATCAGATCAATCCATG+GGG | + | chr7_2:70345209-70345228 | None:intergenic | 45.0% | |
| !! | GTGGTGGACATGTTCATACA+AGG | - | chr7_2:70345300-70345319 | Msa1073030:intron | 45.0% |
| TGGTTACATTAAGGGACGGA+GGG | + | chr7_2:70345434-70345453 | None:intergenic | 45.0% | |
| TGGGTGGTTACATTAAGGGA+CGG | + | chr7_2:70345438-70345457 | None:intergenic | 45.0% | |
| TGCAAAGGGGGGTTACATTA+AGG | - | chr7_2:70345679-70345698 | Msa1073030:intron | 45.0% | |
| GCAAAGGGGGGTTACATTAA+GGG | - | chr7_2:70345680-70345699 | Msa1073030:intron | 45.0% | |
| AATGGGGATACAGAGCAAGA+TGG | - | chr7_2:70345836-70345855 | Msa1073030:CDS | 45.0% | |
| ! | TACCTGGGGTCCATTGATTA+TGG | + | chr7_2:70344714-70344733 | None:intergenic | 45.0% |
| ! | AAACATCCTCGTATTGACGG+TGG | - | chr7_2:70344930-70344949 | Msa1073030:intron | 45.0% |
| ! | AACATCCTCGTATTGACGGT+GGG | - | chr7_2:70344931-70344950 | Msa1073030:intron | 45.0% |
| ! | ATCCCCATGGATTGATCTGA+TGG | - | chr7_2:70345204-70345223 | Msa1073030:intron | 45.0% |
| CACCATCAGATCAATCCATG+GGG | + | chr7_2:70345209-70345228 | None:intergenic | 45.0% | |
| !! | GTGGTGGACATGTTCATACA+AGG | - | chr7_2:70345300-70345319 | Msa1073030:intron | 45.0% |
| TGGTTACATTAAGGGACGGA+GGG | + | chr7_2:70345434-70345453 | None:intergenic | 45.0% | |
| TGGGTGGTTACATTAAGGGA+CGG | + | chr7_2:70345438-70345457 | None:intergenic | 45.0% | |
| TGCAAAGGGGGGTTACATTA+AGG | - | chr7_2:70345679-70345698 | Msa1073030:intron | 45.0% | |
| GCAAAGGGGGGTTACATTAA+GGG | - | chr7_2:70345680-70345699 | Msa1073030:intron | 45.0% | |
| AATGGGGATACAGAGCAAGA+TGG | - | chr7_2:70345836-70345855 | Msa1073030:CDS | 45.0% | |
| GTCCATAATCAATGGACCCC+AGG | - | chr7_2:70344709-70344728 | Msa1073030:intron | 50.0% | |
| CAAAACCCACCGTCAATACG+AGG | + | chr7_2:70344939-70344958 | None:intergenic | 50.0% | |
| ATGGTGTAGACTTGGGACCT+AGG | - | chr7_2:70345223-70345242 | Msa1073030:intron | 50.0% | |
| GGTGCCTACAATTCATGTGG+TGG | - | chr7_2:70345284-70345303 | Msa1073030:intron | 50.0% | |
| GTGGTTACATTAAGGGACGG+AGG | + | chr7_2:70345435-70345454 | None:intergenic | 50.0% | |
| AGGGGGGTTACATTAAGGGA+CGG | - | chr7_2:70345684-70345703 | Msa1073030:intron | 50.0% | |
| GGGTTACATTAAGGGACGGA+GGG | - | chr7_2:70345688-70345707 | Msa1073030:intron | 50.0% | |
| GTGAGACAGATGCGTGCAAT+GGG | - | chr7_2:70345819-70345838 | Msa1073030:CDS | 50.0% | |
| TGAGACAGATGCGTGCAATG+GGG | - | chr7_2:70345820-70345839 | Msa1073030:CDS | 50.0% | |
| GGGATACAGAGCAAGATGGT+CGG | - | chr7_2:70345840-70345859 | Msa1073030:CDS | 50.0% | |
| GTCCATAATCAATGGACCCC+AGG | - | chr7_2:70344709-70344728 | Msa1073030:intron | 50.0% | |
| CAAAACCCACCGTCAATACG+AGG | + | chr7_2:70344939-70344958 | None:intergenic | 50.0% | |
| ATGGTGTAGACTTGGGACCT+AGG | - | chr7_2:70345223-70345242 | Msa1073030:intron | 50.0% | |
| GGTGCCTACAATTCATGTGG+TGG | - | chr7_2:70345284-70345303 | Msa1073030:intron | 50.0% | |
| GTGGTTACATTAAGGGACGG+AGG | + | chr7_2:70345435-70345454 | None:intergenic | 50.0% | |
| AGGGGGGTTACATTAAGGGA+CGG | - | chr7_2:70345684-70345703 | Msa1073030:intron | 50.0% | |
| GGGTTACATTAAGGGACGGA+GGG | - | chr7_2:70345688-70345707 | Msa1073030:intron | 50.0% | |
| GTGAGACAGATGCGTGCAAT+GGG | - | chr7_2:70345819-70345838 | Msa1073030:CDS | 50.0% | |
| TGAGACAGATGCGTGCAATG+GGG | - | chr7_2:70345820-70345839 | Msa1073030:CDS | 50.0% | |
| GGGATACAGAGCAAGATGGT+CGG | - | chr7_2:70345840-70345859 | Msa1073030:CDS | 50.0% | |
| TGAGACTGCAACGAGACGCT+TGG | - | chr7_2:70344568-70344587 | Msa1073030:CDS | 55.0% | |
| GGGGTTACATTAAGGGACGG+AGG | - | chr7_2:70345687-70345706 | Msa1073030:intron | 55.0% | |
| GGTGAGACAGATGCGTGCAA+TGG | - | chr7_2:70345818-70345837 | Msa1073030:CDS | 55.0% | |
| TGAGACTGCAACGAGACGCT+TGG | - | chr7_2:70344568-70344587 | Msa1073030:CDS | 55.0% | |
| GGGGTTACATTAAGGGACGG+AGG | - | chr7_2:70345687-70345706 | Msa1073030:intron | 55.0% | |
| GGTGAGACAGATGCGTGCAA+TGG | - | chr7_2:70345818-70345837 | Msa1073030:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 70344449 | 70345989 | 70344449 | ID=Msa1073030;Name=Msa1073030 |
| chr7_2 | mRNA | 70344449 | 70345989 | 70344449 | ID=Msa1073030-mRNA-1;Parent=Msa1073030;Name=Msa1073030-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|0|0|1|1|1|2|0|151 |
| chr7_2 | exon | 70345708 | 70345989 | 70345708 | ID=Msa1073030-mRNA-1:exon:15817;Parent=Msa1073030-mRNA-1 |
| chr7_2 | exon | 70344449 | 70344622 | 70344449 | ID=Msa1073030-mRNA-1:exon:15816;Parent=Msa1073030-mRNA-1 |
| chr7_2 | CDS | 70345708 | 70345989 | 70345708 | ID=Msa1073030-mRNA-1:cds;Parent=Msa1073030-mRNA-1 |
| chr7_2 | CDS | 70344449 | 70344622 | 70344449 | ID=Msa1073030-mRNA-1:cds;Parent=Msa1073030-mRNA-1 |
| Gene Sequence |
| Protein sequence |
