Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0750930 | sp|Q1G3Q4|RITF1_ARATH | 45.652 | 138 | 74 | 1 | 18 | 155 | 3 | 139 | 5.82e-39 | 137 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0750930 | G7K545 | 96.744 | 215 | 5 | 1 | 1 | 215 | 1 | 213 | 2.34e-151 | 428 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0750930 | TF | PLATZ |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0750930 | Msa1353050 | 0.803881 | 2.820376e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0750930 | MtrunA17_Chr5g0395181 | 96.744 | 215 | 5 | 1 | 1 | 215 | 1 | 213 | 4.50e-155 | 428 |
| Msa0750930 | MtrunA17_Chr4g0040071 | 78.607 | 201 | 38 | 2 | 19 | 214 | 13 | 213 | 6.80e-116 | 329 |
| Msa0750930 | MtrunA17_Chr5g0411151 | 70.755 | 212 | 55 | 2 | 7 | 211 | 21 | 232 | 8.17e-110 | 314 |
| Msa0750930 | MtrunA17_Chr8g0366581 | 69.302 | 215 | 59 | 2 | 7 | 214 | 19 | 233 | 1.28e-106 | 306 |
| Msa0750930 | MtrunA17_Chr1g0179781 | 55.612 | 196 | 81 | 4 | 21 | 210 | 7 | 202 | 3.58e-72 | 218 |
| Msa0750930 | MtrunA17_Chr7g0265291 | 55.500 | 200 | 82 | 4 | 21 | 213 | 7 | 206 | 1.07e-70 | 214 |
| Msa0750930 | MtrunA17_Chr2g0308401 | 49.265 | 136 | 59 | 4 | 22 | 147 | 5 | 140 | 3.07e-40 | 135 |
| Msa0750930 | MtrunA17_Chr4g0020811 | 47.794 | 136 | 61 | 3 | 22 | 147 | 7 | 142 | 4.92e-40 | 134 |
| Msa0750930 | MtrunA17_Chr2g0320521 | 35.556 | 225 | 108 | 5 | 22 | 209 | 7 | 231 | 1.91e-39 | 135 |
| Msa0750930 | MtrunA17_Chr2g0297251 | 35.398 | 226 | 106 | 5 | 21 | 210 | 37 | 258 | 3.15e-39 | 135 |
| Msa0750930 | MtrunA17_Chr4g0065041 | 45.185 | 135 | 73 | 1 | 21 | 155 | 8 | 141 | 1.24e-38 | 134 |
| Msa0750930 | MtrunA17_Chr7g0230511 | 44.030 | 134 | 73 | 2 | 21 | 154 | 9 | 140 | 6.93e-37 | 129 |
| Msa0750930 | MtrunA17_Chr2g0320561 | 46.809 | 141 | 65 | 4 | 22 | 152 | 5 | 145 | 5.34e-35 | 124 |
| Msa0750930 | MtrunA17_Chr2g0320551 | 44.853 | 136 | 65 | 3 | 22 | 147 | 5 | 140 | 2.26e-34 | 120 |
| Msa0750930 | MtrunA17_Chr4g0052451 | 41.463 | 82 | 42 | 1 | 73 | 148 | 11 | 92 | 1.97e-19 | 79.7 |
| Msa0750930 | MtrunA17_Chr5g0434331 | 28.141 | 199 | 110 | 7 | 15 | 209 | 37 | 206 | 2.59e-18 | 79.7 |
| Msa0750930 | MtrunA17_Chr8g0386511 | 30.519 | 154 | 99 | 3 | 60 | 209 | 4 | 153 | 7.52e-17 | 74.7 |
| Msa0750930 | MtrunA17_Chr8g0392151 | 32.877 | 146 | 75 | 5 | 23 | 147 | 15 | 158 | 4.83e-16 | 74.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0750930 | AT4G17900.1 | 64.762 | 210 | 66 | 3 | 7 | 210 | 20 | 227 | 1.47e-95 | 278 |
| Msa0750930 | AT4G17900.2 | 66.667 | 198 | 58 | 3 | 19 | 210 | 18 | 213 | 4.83e-93 | 271 |
| Msa0750930 | AT1G32700.1 | 66.509 | 212 | 55 | 5 | 15 | 214 | 4 | 211 | 1.67e-91 | 267 |
| Msa0750930 | AT1G21000.1 | 49.174 | 242 | 81 | 5 | 10 | 209 | 5 | 246 | 3.65e-75 | 227 |
| Msa0750930 | AT1G21000.2 | 49.174 | 242 | 81 | 5 | 10 | 209 | 2 | 243 | 3.78e-75 | 227 |
| Msa0750930 | AT5G46710.3 | 53.883 | 206 | 86 | 4 | 13 | 209 | 4 | 209 | 2.83e-73 | 221 |
| Msa0750930 | AT5G46710.1 | 53.365 | 208 | 88 | 4 | 11 | 209 | 18 | 225 | 6.65e-73 | 221 |
| Msa0750930 | AT1G32700.2 | 66.477 | 176 | 45 | 4 | 49 | 214 | 1 | 172 | 2.75e-72 | 217 |
| Msa0750930 | AT1G76590.1 | 48.684 | 228 | 78 | 3 | 21 | 209 | 18 | 245 | 9.65e-71 | 216 |
| Msa0750930 | AT1G43000.2 | 45.495 | 222 | 102 | 3 | 7 | 209 | 2 | 223 | 3.34e-65 | 201 |
| Msa0750930 | AT1G43000.1 | 46.296 | 216 | 97 | 3 | 13 | 209 | 1 | 216 | 9.17e-65 | 199 |
| Msa0750930 | AT5G46710.2 | 59.420 | 138 | 55 | 1 | 11 | 147 | 18 | 155 | 1.16e-58 | 182 |
| Msa0750930 | AT2G27930.1 | 42.927 | 205 | 90 | 4 | 18 | 211 | 1 | 189 | 2.87e-51 | 164 |
| Msa0750930 | AT2G27930.4 | 42.927 | 205 | 90 | 4 | 18 | 211 | 1 | 189 | 2.87e-51 | 164 |
| Msa0750930 | AT2G27930.3 | 54.745 | 137 | 52 | 2 | 21 | 147 | 4 | 140 | 9.30e-48 | 155 |
| Msa0750930 | AT2G27930.2 | 54.745 | 137 | 52 | 2 | 21 | 147 | 4 | 140 | 9.30e-48 | 155 |
| Msa0750930 | AT2G12646.1 | 45.652 | 138 | 74 | 1 | 18 | 155 | 3 | 139 | 5.92e-40 | 137 |
| Msa0750930 | AT2G12646.2 | 45.652 | 138 | 74 | 1 | 18 | 155 | 3 | 139 | 5.92e-40 | 137 |
| Msa0750930 | AT2G12646.3 | 45.926 | 135 | 72 | 1 | 21 | 155 | 3 | 136 | 1.86e-39 | 136 |
| Msa0750930 | AT3G60670.1 | 45.455 | 132 | 71 | 1 | 16 | 147 | 2 | 132 | 1.73e-36 | 128 |
| Msa0750930 | AT1G31040.1 | 34.071 | 226 | 110 | 6 | 21 | 209 | 19 | 242 | 6.14e-35 | 124 |
| Msa0750930 | AT2G27930.5 | 43.243 | 148 | 58 | 3 | 74 | 211 | 61 | 192 | 1.19e-31 | 114 |
| Msa0750930 | AT2G27930.6 | 43.243 | 148 | 58 | 3 | 74 | 211 | 61 | 192 | 1.19e-31 | 114 |
| Msa0750930 | AT2G01818.1 | 32.127 | 221 | 126 | 6 | 12 | 209 | 2 | 221 | 1.27e-24 | 97.1 |
| Msa0750930 | AT2G01818.2 | 32.886 | 149 | 81 | 5 | 80 | 209 | 9 | 157 | 2.76e-12 | 62.8 |
Find 68 sgRNAs with CRISPR-Local
Find 141 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAATTCTTGTTGATGTAATT+TGG | 0.060988 | 5_2:+4487553 | None:intergenic |
| TTTCTTCTTCTGGAATTTCT+TGG | 0.228075 | 5_2:+4485629 | None:intergenic |
| GTTTAAGTATTTAGTAAATA+AGG | 0.240485 | 5_2:+4485445 | None:intergenic |
| CGGTGAGATTGGCAGAATTA+TGG | 0.272625 | 5_2:-4485400 | Msa0750930:three_prime_UTR |
| AATAAATGTTATTCATAATA+TGG | 0.276763 | 5_2:-4485289 | Msa0750930:three_prime_UTR |
| TTCACAGACATGGCAAATAT+TGG | 0.300856 | 5_2:+4486295 | None:intergenic |
| AATTCTTGTTGATGTAATTT+GGG | 0.307393 | 5_2:+4487554 | None:intergenic |
| AATTACATCAACAAGAATTA+TGG | 0.311763 | 5_2:-4487550 | Msa0750930:intron |
| TTACTAAGATAGTACTATAT+TGG | 0.339364 | 5_2:-4487642 | Msa0750930:five_prime_UTR |
| CTTTCCTCCAAACCAAAACT+TGG | 0.356857 | 5_2:-4487599 | Msa0750930:five_prime_UTR |
| TTATGATGGAAACCAAGTTT+TGG | 0.369868 | 5_2:+4487587 | None:intergenic |
| GAGGAAAATGTAGGAACTTT+GGG | 0.379553 | 5_2:+4487690 | None:intergenic |
| AGAGGAAAATGTAGGAACTT+TGG | 0.381616 | 5_2:+4487689 | None:intergenic |
| TCATTCACCTACTGCTCCCT+TGG | 0.389190 | 5_2:-4486257 | Msa0750930:CDS |
| GGGGATGGAGAAGGTGTAGT+TGG | 0.392811 | 5_2:-4487375 | Msa0750930:CDS |
| TATTTATTGACTCAGATAGT+TGG | 0.398331 | 5_2:-4485657 | Msa0750930:intron |
| CTACTGCTCCCTTGGTTGTA+AGG | 0.404328 | 5_2:-4486249 | Msa0750930:intron |
| CTTCTTCTGGAATTTCTTGG+AGG | 0.404736 | 5_2:+4485632 | None:intergenic |
| ACTTGAATTCACGGTGAGAT+TGG | 0.416084 | 5_2:-4485411 | Msa0750930:three_prime_UTR |
| AAAAGTTAAGTGAGAGAGAT+GGG | 0.416132 | 5_2:-4485608 | Msa0750930:CDS |
| CTTCATATCATGATGTGATA+AGG | 0.416229 | 5_2:-4486433 | Msa0750930:CDS |
| ATTGTACATACTTGAATTCA+CGG | 0.419852 | 5_2:-4485420 | Msa0750930:three_prime_UTR |
| TTTAGAATTTCTACAACTTA+CGG | 0.422121 | 5_2:-4485360 | Msa0750930:three_prime_UTR |
| CAAAGATCACAGAGCTATCC+AGG | 0.430527 | 5_2:-4487178 | Msa0750930:intron |
| TTCTTGTTTGATAGATAAGA+AGG | 0.443037 | 5_2:-4486457 | Msa0750930:intron |
| TTCATATCATGATGTGATAA+GGG | 0.444748 | 5_2:-4486432 | Msa0750930:CDS |
| TTGTAAGGTGGCGGTGTTGA+AGG | 0.453737 | 5_2:+4485519 | None:intergenic |
| TGGGCTATGATTTCTTATGA+TGG | 0.467092 | 5_2:+4487573 | None:intergenic |
| AATGTAGGAACTTTGGGAGT+GGG | 0.468759 | 5_2:+4487696 | None:intergenic |
| GTTCCACATAGAGCTCCAAT+AGG | 0.475327 | 5_2:-4485474 | Msa0750930:CDS |
| GAAAAGAAAGAGGAAAATGT+AGG | 0.478491 | 5_2:+4487681 | None:intergenic |
| ATGTAGGAACTTTGGGAGTG+GGG | 0.479755 | 5_2:+4487697 | None:intergenic |
| TTCCACATAGAGCTCCAATA+GGG | 0.487236 | 5_2:-4485473 | Msa0750930:CDS |
| AAGAACCTTGCTTGGAGAAG+TGG | 0.495841 | 5_2:+4487303 | None:intergenic |
| GTGACACCTTTGCCAGGCTT+AGG | 0.508847 | 5_2:+4486317 | None:intergenic |
| TTGTAGAGAGGAAAAGAAAG+AGG | 0.510018 | 5_2:+4487671 | None:intergenic |
| ACAGTGTAGGATTGATATGT+AGG | 0.510361 | 5_2:+4485312 | None:intergenic |
| TAGTAATTTAATTTGTAGAG+AGG | 0.511938 | 5_2:+4487659 | None:intergenic |
| AATAACATTTATTACAGTGT+AGG | 0.512457 | 5_2:+4485299 | None:intergenic |
| CCTTTGCCAGGCTTAGGCTG+AGG | 0.513021 | 5_2:+4486323 | None:intergenic |
| ATATTGGTGACACCTTTGCC+AGG | 0.513857 | 5_2:+4486311 | None:intergenic |
| ATTGAACAAAGAACCTTGCT+TGG | 0.519311 | 5_2:+4487295 | None:intergenic |
| AGTGAGAGAGATGGGTCAGA+TGG | 0.523449 | 5_2:-4485600 | Msa0750930:CDS |
| CAAAATTGCTAAGAGGAGGA+AGG | 0.525337 | 5_2:-4485499 | Msa0750930:CDS |
| GAAAGGCCTCAGCCTAAGCC+TGG | 0.525826 | 5_2:-4486329 | Msa0750930:CDS |
| AGATTGTGTTCTTGAATGAA+AGG | 0.538525 | 5_2:-4486346 | Msa0750930:CDS |
| TATTGCTTGGACTGTATGAA+TGG | 0.540936 | 5_2:-4487231 | Msa0750930:CDS |
| TGAATGCAATATGTATTGCT+TGG | 0.544713 | 5_2:-4487244 | Msa0750930:CDS |
| CACCTTACAAAATTGCTAAG+AGG | 0.547965 | 5_2:-4485506 | Msa0750930:CDS |
| ATGGACTATAGTTGCACTAG+TGG | 0.548254 | 5_2:-4485270 | Msa0750930:three_prime_UTR |
| TGCAACCACTTCTCCAAGCA+AGG | 0.549474 | 5_2:-4487308 | Msa0750930:CDS |
| ATGCGCAATATTGTACAAAG+TGG | 0.561449 | 5_2:-4485232 | Msa0750930:three_prime_UTR |
| GAAGGCTTCGTTCACAGACA+TGG | 0.567153 | 5_2:+4486285 | None:intergenic |
| AAAATTGCTAAGAGGAGGAA+GGG | 0.570406 | 5_2:-4485498 | Msa0750930:CDS |
| AAATGTAGGAACTTTGGGAG+TGG | 0.578691 | 5_2:+4487695 | None:intergenic |
| TGGAGAAGTGGTTGCAACCA+TGG | 0.580919 | 5_2:+4487315 | None:intergenic |
| CTTACAACCAAGGGAGCAGT+AGG | 0.590242 | 5_2:+4486250 | None:intergenic |
| CCTCAGCCTAAGCCTGGCAA+AGG | 0.590940 | 5_2:-4486323 | Msa0750930:CDS |
| AAGAAATCAAGTGGCCACCA+TGG | 0.599172 | 5_2:-4487332 | Msa0750930:CDS |
| GATTGTGAAATAATCTAATG+AGG | 0.610847 | 5_2:-4485152 | Msa0750930:three_prime_UTR |
| AATGCATACCTTACAACCAA+GGG | 0.611602 | 5_2:+4486241 | None:intergenic |
| TGAATGAAGAAGAAATCAAG+TGG | 0.619967 | 5_2:-4487341 | Msa0750930:CDS |
| CTTACAAAATTGCTAAGAGG+AGG | 0.624645 | 5_2:-4485503 | Msa0750930:CDS |
| AGTAGGTGAATGAATCAAGA+AGG | 0.627686 | 5_2:+4486267 | None:intergenic |
| TCCACATAGAGCTCCAATAG+GGG | 0.638714 | 5_2:-4485472 | Msa0750930:CDS |
| CCACATAGAGCTCCAATAGG+GGG | 0.648093 | 5_2:-4485471 | Msa0750930:CDS |
| CAATGCATACCTTACAACCA+AGG | 0.674127 | 5_2:+4486240 | None:intergenic |
| AGAAGTGGTTGCAACCATGG+TGG | 0.773987 | 5_2:+4487318 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAAATCATGAAAAAAAAA+TGG | + | chr5_2:4485394-4485413 | None:intergenic | 10.0% |
| !! | TTAATTATATGTATGTAATT+AGG | - | chr5_2:4485452-4485471 | Msa0750930:exon | 10.0% |
| !! | TAATTATATGTATGTAATTA+GGG | - | chr5_2:4485453-4485472 | Msa0750930:exon | 10.0% |
| !! | AATAAATGTTATTCATAATA+TGG | - | chr5_2:4487560-4487579 | Msa0750930:five_prime_UTR | 10.0% |
| !!! | GTTGTTTGATATTTTTAATT+TGG | - | chr5_2:4485429-4485448 | Msa0750930:three_prime_UTR | 15.0% |
| !! | AATTATATGTATGTAATTAG+GGG | - | chr5_2:4485454-4485473 | Msa0750930:exon | 15.0% |
| !!! | GTCAAAAACATTTTTTTAAT+TGG | + | chr5_2:4486065-4486084 | None:intergenic | 15.0% |
| !!! | TTTTAAATCAATTTTGTAAG+AGG | + | chr5_2:4486238-4486257 | None:intergenic | 15.0% |
| !!! | ATTTTACACTCAATTTTTAT+TGG | - | chr5_2:4486855-4486874 | Msa0750930:intron | 15.0% |
| !! | GTTTAAGTATTTAGTAAATA+AGG | + | chr5_2:4487407-4487426 | None:intergenic | 15.0% |
| !!! | TAGTAATTTAATTTGTAGAG+AGG | + | chr5_2:4485193-4485212 | None:intergenic | 20.0% |
| !! | TTACTAAGATAGTACTATAT+TGG | - | chr5_2:4485207-4485226 | Msa0750930:three_prime_UTR | 20.0% |
| !! | AATTCTTGTTGATGTAATTT+GGG | + | chr5_2:4485298-4485317 | None:intergenic | 20.0% |
| !! | TAATTCTTGTTGATGTAATT+TGG | + | chr5_2:4485299-4485318 | None:intergenic | 20.0% |
| !! | AATTACATCAACAAGAATTA+TGG | - | chr5_2:4485299-4485318 | Msa0750930:three_prime_UTR | 20.0% |
| !! | ATTATATGTATGTAATTAGG+GGG | - | chr5_2:4485455-4485474 | Msa0750930:CDS | 20.0% |
| !!! | ATTTGAAATCTTCACAAAAT+TGG | + | chr5_2:4485850-4485869 | None:intergenic | 20.0% |
| !! | TAGAATCCATTAAAATACAT+TGG | + | chr5_2:4485951-4485970 | None:intergenic | 20.0% |
| !! | CACAATAATAAATTGTTTGA+TGG | + | chr5_2:4486100-4486119 | None:intergenic | 20.0% |
| !! | TGACTTTCATAAAATATAAG+AGG | - | chr5_2:4486198-4486217 | Msa0750930:intron | 20.0% |
| !! | ACCACATATATGATATAATA+TGG | - | chr5_2:4486334-4486353 | Msa0750930:CDS | 20.0% |
| !! | CCACATATATGATATAATAT+GGG | - | chr5_2:4486335-4486354 | Msa0750930:CDS | 20.0% |
| !! | AATGTTTGCATACTTATTAT+AGG | + | chr5_2:4486951-4486970 | None:intergenic | 20.0% |
| !!! | TAATAAGTATGCAAACATTT+TGG | - | chr5_2:4486952-4486971 | Msa0750930:intron | 20.0% |
| !!! | TGTTATACTTACTTTTTCAA+GGG | + | chr5_2:4486995-4487014 | None:intergenic | 20.0% |
| !!! | ATGTTATACTTACTTTTTCA+AGG | + | chr5_2:4486996-4487015 | None:intergenic | 20.0% |
| !!! | TTTAGAATTTCTACAACTTA+CGG | - | chr5_2:4487489-4487508 | Msa0750930:intron | 20.0% |
| !! | AATAACATTTATTACAGTGT+AGG | + | chr5_2:4487553-4487572 | None:intergenic | 20.0% |
| ! | ATGTGTAGTATATGTTAAAG+GGG | + | chr5_2:4485353-4485372 | None:intergenic | 25.0% |
| ! | CATGTGTAGTATATGTTAAA+GGG | + | chr5_2:4485354-4485373 | None:intergenic | 25.0% |
| !!! | TATAAGTATCTTGTTTTACC+TGG | + | chr5_2:4485692-4485711 | None:intergenic | 25.0% |
| ! | ATTACTTAATAGTGTCAATG+TGG | - | chr5_2:4485781-4485800 | Msa0750930:intron | 25.0% |
| !!! | AATCAAAAGCTTTGAATTTG+AGG | - | chr5_2:4485867-4485886 | Msa0750930:intron | 25.0% |
| ! | AAAATATTTGTCTTCTGTGT+TGG | - | chr5_2:4485971-4485990 | Msa0750930:intron | 25.0% |
| ! | AATTATCACATCATGATTCA+TGG | + | chr5_2:4486146-4486165 | None:intergenic | 25.0% |
| ! | ATGAATCATGATGTGATAAT+TGG | - | chr5_2:4486145-4486164 | Msa0750930:intron | 25.0% |
| ! | CCCATATTATATCATATATG+TGG | + | chr5_2:4486338-4486357 | None:intergenic | 25.0% |
| !! | TTCTTGTTTGATAGATAAGA+AGG | - | chr5_2:4486392-4486411 | Msa0750930:CDS | 25.0% |
| ! | TTCATATCATGATGTGATAA+GGG | - | chr5_2:4486417-4486436 | Msa0750930:CDS | 25.0% |
| !!! | AGAAATTTTTGGACATAACA+GGG | - | chr5_2:4486452-4486471 | Msa0750930:intron | 25.0% |
| !!! | TGAAAGCAATTTTAACTTGA+TGG | + | chr5_2:4486648-4486667 | None:intergenic | 25.0% |
| ! | TCTAGGTAACGTTTAATATT+AGG | - | chr5_2:4486918-4486937 | Msa0750930:intron | 25.0% |
| !!! | TTTTTCAAGGGAAACAAATA+GGG | + | chr5_2:4486983-4487002 | None:intergenic | 25.0% |
| ! | GAGTTAATTAACACTCAAAT+TGG | - | chr5_2:4487019-4487038 | Msa0750930:intron | 25.0% |
| !!! | TATTTATTGACTCAGATAGT+TGG | - | chr5_2:4487192-4487211 | Msa0750930:CDS | 25.0% |
| ! | ATTGTACATACTTGAATTCA+CGG | - | chr5_2:4487429-4487448 | Msa0750930:intron | 25.0% |
| GAAAAGAAAGAGGAAAATGT+AGG | + | chr5_2:4485171-4485190 | None:intergenic | 30.0% | |
| !! | TTATGATGGAAACCAAGTTT+TGG | + | chr5_2:4485265-4485284 | None:intergenic | 30.0% |
| CCATGTGTAGTATATGTTAA+AGG | + | chr5_2:4485355-4485374 | None:intergenic | 30.0% | |
| CCTTTAACATATACTACACA+TGG | - | chr5_2:4485352-4485371 | Msa0750930:three_prime_UTR | 30.0% | |
| TGAATGAAGAAGAAATCAAG+TGG | - | chr5_2:4485508-4485527 | Msa0750930:CDS | 30.0% | |
| !! | CATATTGCATTCACTTTTGT+TGG | + | chr5_2:4485598-4485617 | None:intergenic | 30.0% |
| TGAATGCAATATGTATTGCT+TGG | - | chr5_2:4485605-4485624 | Msa0750930:CDS | 30.0% | |
| CTTCACAAAATTGGATGAAA+TGG | + | chr5_2:4485841-4485860 | None:intergenic | 30.0% | |
| CTTGTACACATTACTTTCTT+GGG | - | chr5_2:4485918-4485937 | Msa0750930:intron | 30.0% | |
| TTGTACACATTACTTTCTTG+GGG | - | chr5_2:4485919-4485938 | Msa0750930:intron | 30.0% | |
| !! | AAGGGTCCAATGTATTTTAA+TGG | - | chr5_2:4485942-4485961 | Msa0750930:intron | 30.0% |
| TGCAATTCAAAAGTCAACTA+TGG | - | chr5_2:4486035-4486054 | Msa0750930:intron | 30.0% | |
| ATTCAAAAGTCAACTATGGA+TGG | - | chr5_2:4486039-4486058 | Msa0750930:intron | 30.0% | |
| TGTGCAATTTAAATAGCCAT+CGG | - | chr5_2:4486116-4486135 | Msa0750930:intron | 30.0% | |
| CTTCATATCATGATGTGATA+AGG | - | chr5_2:4486416-4486435 | Msa0750930:CDS | 30.0% | |
| !! | GTCTGAGATACAGAAATTTT+TGG | - | chr5_2:4486441-4486460 | Msa0750930:CDS | 30.0% |
| !! | CAGAAATTTTTGGACATAAC+AGG | - | chr5_2:4486451-4486470 | Msa0750930:intron | 30.0% |
| !! | GAAATTTTTGGACATAACAG+GGG | - | chr5_2:4486453-4486472 | Msa0750930:intron | 30.0% |
| AGATTGTGTTCTTGAATGAA+AGG | - | chr5_2:4486503-4486522 | Msa0750930:intron | 30.0% | |
| !!! | TTTTAACTTGATGGAGAGTT+GGG | + | chr5_2:4486639-4486658 | None:intergenic | 30.0% |
| !!! | ATTTTAACTTGATGGAGAGT+TGG | + | chr5_2:4486640-4486659 | None:intergenic | 30.0% |
| ! | TCCTGTATGTGTTAATGTTT+TGG | - | chr5_2:4486826-4486845 | Msa0750930:intron | 30.0% |
| ACCAAAACATTAACACATAC+AGG | + | chr5_2:4486830-4486849 | None:intergenic | 30.0% | |
| !!! | CTTTTTCAAGGGAAACAAAT+AGG | + | chr5_2:4486984-4487003 | None:intergenic | 30.0% |
| GTCTTCAAAATTGTATGCAT+GGG | - | chr5_2:4487041-4487060 | Msa0750930:intron | 30.0% | |
| !! | TTTCTTCTTCTGGAATTTCT+TGG | + | chr5_2:4487223-4487242 | None:intergenic | 30.0% |
| !! | CACTTAACTTTTTCTTCTTC+TGG | + | chr5_2:4487233-4487252 | None:intergenic | 30.0% |
| AAAAAGTTAAGTGAGAGAGA+TGG | - | chr5_2:4487240-4487259 | Msa0750930:CDS | 30.0% | |
| AAAAGTTAAGTGAGAGAGAT+GGG | - | chr5_2:4487241-4487260 | Msa0750930:CDS | 30.0% | |
| GAGGAAAATGTAGGAACTTT+GGG | + | chr5_2:4485162-4485181 | None:intergenic | 35.0% | |
| AGAGGAAAATGTAGGAACTT+TGG | + | chr5_2:4485163-4485182 | None:intergenic | 35.0% | |
| TTGTAGAGAGGAAAAGAAAG+AGG | + | chr5_2:4485181-4485200 | None:intergenic | 35.0% | |
| !!! | ATGGAAACCAAGTTTTGGTT+TGG | + | chr5_2:4485260-4485279 | None:intergenic | 35.0% |
| TGGGCTATGATTTCTTATGA+TGG | + | chr5_2:4485279-4485298 | None:intergenic | 35.0% | |
| TATGTATGTAATTAGGGGGA+TGG | - | chr5_2:4485459-4485478 | Msa0750930:CDS | 35.0% | |
| ATTGAACAAAGAACCTTGCT+TGG | + | chr5_2:4485557-4485576 | None:intergenic | 35.0% | |
| TATTGCTTGGACTGTATGAA+TGG | - | chr5_2:4485618-4485637 | Msa0750930:CDS | 35.0% | |
| CCAAGAAAGTAATGTGTACA+AGG | + | chr5_2:4485920-4485939 | None:intergenic | 35.0% | |
| CCTTGTACACATTACTTTCT+TGG | - | chr5_2:4485917-4485936 | Msa0750930:intron | 35.0% | |
| GATAATTGGATGATTGCTCA+AGG | - | chr5_2:4486159-4486178 | Msa0750930:intron | 35.0% | |
| TTCACAGACATGGCAAATAT+TGG | + | chr5_2:4486557-4486576 | None:intergenic | 35.0% | |
| AGTAGGTGAATGAATCAAGA+AGG | + | chr5_2:4486585-4486604 | None:intergenic | 35.0% | |
| AATGCATACCTTACAACCAA+GGG | + | chr5_2:4486611-4486630 | None:intergenic | 35.0% | |
| AACGTTACCTAGATTGTTTG+AGG | + | chr5_2:4486911-4486930 | None:intergenic | 35.0% | |
| GGTCTTCAAAATTGTATGCA+TGG | - | chr5_2:4487040-4487059 | Msa0750930:intron | 35.0% | |
| ! | TTAGCAATTTTGTAAGGTGG+CGG | + | chr5_2:4487342-4487361 | None:intergenic | 35.0% |
| ! | CTCTTAGCAATTTTGTAAGG+TGG | + | chr5_2:4487345-4487364 | None:intergenic | 35.0% |
| CACCTTACAAAATTGCTAAG+AGG | - | chr5_2:4487343-4487362 | Msa0750930:CDS | 35.0% | |
| ! | CTCCTCTTAGCAATTTTGTA+AGG | + | chr5_2:4487348-4487367 | None:intergenic | 35.0% |
| CTTACAAAATTGCTAAGAGG+AGG | - | chr5_2:4487346-4487365 | Msa0750930:CDS | 35.0% | |
| AAAATTGCTAAGAGGAGGAA+GGG | - | chr5_2:4487351-4487370 | Msa0750930:CDS | 35.0% | |
| ACAGTGTAGGATTGATATGT+AGG | + | chr5_2:4487540-4487559 | None:intergenic | 35.0% | |
| ATGCGCAATATTGTACAAAG+TGG | - | chr5_2:4487617-4487636 | Msa0750930:five_prime_UTR | 35.0% | |
| ! | AATGTAGGAACTTTGGGAGT+GGG | + | chr5_2:4485156-4485175 | None:intergenic | 40.0% |
| ! | AAATGTAGGAACTTTGGGAG+TGG | + | chr5_2:4485157-4485176 | None:intergenic | 40.0% |
| CTTTCCTCCAAACCAAAACT+TGG | - | chr5_2:4485250-4485269 | Msa0750930:three_prime_UTR | 40.0% | |
| !!! | GAAACCAAGTTTTGGTTTGG+AGG | + | chr5_2:4485257-4485276 | None:intergenic | 40.0% |
| ACACATTACTTTCTTGGGGA+AGG | - | chr5_2:4485923-4485942 | Msa0750930:intron | 40.0% | |
| CACATTACTTTCTTGGGGAA+GGG | - | chr5_2:4485924-4485943 | Msa0750930:intron | 40.0% | |
| CAATGCATACCTTACAACCA+AGG | + | chr5_2:4486612-4486631 | None:intergenic | 40.0% | |
| TTTCTCATCGAACATGTGTC+TGG | - | chr5_2:4486688-4486707 | Msa0750930:intron | 40.0% | |
| GTTGTTGCCTCAAACAATCT+AGG | - | chr5_2:4486901-4486920 | Msa0750930:intron | 40.0% | |
| !! | CTTCTTCTGGAATTTCTTGG+AGG | + | chr5_2:4487220-4487239 | None:intergenic | 40.0% |
| CAAAATTGCTAAGAGGAGGA+AGG | - | chr5_2:4487350-4487369 | Msa0750930:CDS | 40.0% | |
| TTCCACATAGAGCTCCAATA+GGG | - | chr5_2:4487376-4487395 | Msa0750930:CDS | 40.0% | |
| ACTTGAATTCACGGTGAGAT+TGG | - | chr5_2:4487438-4487457 | Msa0750930:intron | 40.0% | |
| ! | ATGGACTATAGTTGCACTAG+TGG | - | chr5_2:4487579-4487598 | Msa0750930:five_prime_UTR | 40.0% |
| ! | ATGTAGGAACTTTGGGAGTG+GGG | + | chr5_2:4485155-4485174 | None:intergenic | 45.0% |
| TGTAATTAGGGGGATGGAGA+AGG | - | chr5_2:4485465-4485484 | Msa0750930:CDS | 45.0% | |
| AAGAAATCAAGTGGCCACCA+TGG | - | chr5_2:4485517-4485536 | Msa0750930:CDS | 45.0% | |
| AAGAACCTTGCTTGGAGAAG+TGG | + | chr5_2:4485549-4485568 | None:intergenic | 45.0% | |
| CAAAGATCACAGAGCTATCC+AGG | - | chr5_2:4485671-4485690 | Msa0750930:intron | 45.0% | |
| CATGATTCATGGTGAACCGA+TGG | + | chr5_2:4486135-4486154 | None:intergenic | 45.0% | |
| ! | ATATTGGTGACACCTTTGCC+AGG | + | chr5_2:4486541-4486560 | None:intergenic | 45.0% |
| GTTCCACATAGAGCTCCAAT+AGG | - | chr5_2:4487375-4487394 | Msa0750930:CDS | 45.0% | |
| TCCACATAGAGCTCCAATAG+GGG | - | chr5_2:4487377-4487396 | Msa0750930:CDS | 45.0% | |
| TAAATAAGGCCTCCCCCTAT+TGG | + | chr5_2:4487393-4487412 | None:intergenic | 45.0% | |
| CGGTGAGATTGGCAGAATTA+TGG | - | chr5_2:4487449-4487468 | Msa0750930:intron | 45.0% | |
| AGAAGTGGTTGCAACCATGG+TGG | + | chr5_2:4485534-4485553 | None:intergenic | 50.0% | |
| TGGAGAAGTGGTTGCAACCA+TGG | + | chr5_2:4485537-4485556 | None:intergenic | 50.0% | |
| TGCAACCACTTCTCCAAGCA+AGG | - | chr5_2:4485541-4485560 | Msa0750930:CDS | 50.0% | |
| GAAGGCTTCGTTCACAGACA+TGG | + | chr5_2:4486567-4486586 | None:intergenic | 50.0% | |
| TCATTCACCTACTGCTCCCT+TGG | - | chr5_2:4486592-4486611 | Msa0750930:intron | 50.0% | |
| CTTACAACCAAGGGAGCAGT+AGG | + | chr5_2:4486602-4486621 | None:intergenic | 50.0% | |
| CTACTGCTCCCTTGGTTGTA+AGG | - | chr5_2:4486600-4486619 | Msa0750930:intron | 50.0% | |
| AGTGAGAGAGATGGGTCAGA+TGG | - | chr5_2:4487249-4487268 | Msa0750930:CDS | 50.0% | |
| ! | TTGTAAGGTGGCGGTGTTGA+AGG | + | chr5_2:4487333-4487352 | None:intergenic | 50.0% |
| CCACATAGAGCTCCAATAGG+GGG | - | chr5_2:4487378-4487397 | Msa0750930:CDS | 50.0% | |
| ! | GGGGATGGAGAAGGTGTAGT+TGG | - | chr5_2:4485474-4485493 | Msa0750930:CDS | 55.0% |
| GTGACACCTTTGCCAGGCTT+AGG | + | chr5_2:4486535-4486554 | None:intergenic | 55.0% | |
| CCCCCTATTGGAGCTCTATG+TGG | + | chr5_2:4487381-4487400 | None:intergenic | 55.0% | |
| CATAGAGCTCCAATAGGGGG+AGG | - | chr5_2:4487381-4487400 | Msa0750930:intron | 55.0% | |
| GAAAGGCCTCAGCCTAAGCC+TGG | - | chr5_2:4486520-4486539 | Msa0750930:intron | 60.0% | |
| CCTTTGCCAGGCTTAGGCTG+AGG | + | chr5_2:4486529-4486548 | None:intergenic | 60.0% | |
| CCTCAGCCTAAGCCTGGCAA+AGG | - | chr5_2:4486526-4486545 | Msa0750930:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 4485152 | 4487719 | 4485152 | ID=Msa0750930;Name=Msa0750930 |
| chr5_2 | mRNA | 4485152 | 4487719 | 4485152 | ID=Msa0750930-mRNA-1;Parent=Msa0750930;Name=Msa0750930-mRNA-1;_AED=0.02;_eAED=0.02;_QI=166|1|1|1|1|1|4|303|215 |
| chr5_2 | exon | 4485152 | 4485664 | 4485152 | ID=Msa0750930-mRNA-1:exon:1705;Parent=Msa0750930-mRNA-1 |
| chr5_2 | exon | 4486250 | 4486465 | 4486250 | ID=Msa0750930-mRNA-1:exon:1704;Parent=Msa0750930-mRNA-1 |
| chr5_2 | exon | 4487179 | 4487397 | 4487179 | ID=Msa0750930-mRNA-1:exon:1703;Parent=Msa0750930-mRNA-1 |
| chr5_2 | exon | 4487551 | 4487719 | 4487551 | ID=Msa0750930-mRNA-1:exon:1702;Parent=Msa0750930-mRNA-1 |
| chr5_2 | five_prime_UTR | 4487554 | 4487719 | 4487554 | ID=Msa0750930-mRNA-1:five_prime_utr;Parent=Msa0750930-mRNA-1 |
| chr5_2 | CDS | 4487551 | 4487553 | 4487551 | ID=Msa0750930-mRNA-1:cds;Parent=Msa0750930-mRNA-1 |
| chr5_2 | CDS | 4487179 | 4487397 | 4487179 | ID=Msa0750930-mRNA-1:cds;Parent=Msa0750930-mRNA-1 |
| chr5_2 | CDS | 4486250 | 4486465 | 4486250 | ID=Msa0750930-mRNA-1:cds;Parent=Msa0750930-mRNA-1 |
| chr5_2 | CDS | 4485455 | 4485664 | 4485455 | ID=Msa0750930-mRNA-1:cds;Parent=Msa0750930-mRNA-1 |
| chr5_2 | three_prime_UTR | 4485152 | 4485454 | 4485152 | ID=Msa0750930-mRNA-1:three_prime_utr;Parent=Msa0750930-mRNA-1 |
| Gene Sequence |
| Protein sequence |
