Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1353050 | XP_003610806.1 | 96.744 | 215 | 5 | 1 | 1 | 215 | 1 | 213 | 4.90e-151 | 428 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1353050 | sp|Q1G3Q4|RITF1_ARATH | 45.652 | 138 | 74 | 1 | 18 | 155 | 3 | 139 | 5.82e-39 | 137 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1353050 | G7K545 | 96.744 | 215 | 5 | 1 | 1 | 215 | 1 | 213 | 2.34e-151 | 428 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1353050 | TF | PLATZ |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0750930 | Msa1353050 | 0.803881 | 2.820376e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1353050 | MtrunA17_Chr5g0395181 | 96.744 | 215 | 5 | 1 | 1 | 215 | 1 | 213 | 4.50e-155 | 428 |
| Msa1353050 | MtrunA17_Chr4g0040071 | 78.607 | 201 | 38 | 2 | 19 | 214 | 13 | 213 | 6.80e-116 | 329 |
| Msa1353050 | MtrunA17_Chr5g0411151 | 70.755 | 212 | 55 | 2 | 7 | 211 | 21 | 232 | 8.17e-110 | 314 |
| Msa1353050 | MtrunA17_Chr8g0366581 | 69.302 | 215 | 59 | 2 | 7 | 214 | 19 | 233 | 1.28e-106 | 306 |
| Msa1353050 | MtrunA17_Chr1g0179781 | 55.612 | 196 | 81 | 4 | 21 | 210 | 7 | 202 | 3.58e-72 | 218 |
| Msa1353050 | MtrunA17_Chr7g0265291 | 55.500 | 200 | 82 | 4 | 21 | 213 | 7 | 206 | 1.07e-70 | 214 |
| Msa1353050 | MtrunA17_Chr2g0308401 | 49.265 | 136 | 59 | 4 | 22 | 147 | 5 | 140 | 3.07e-40 | 135 |
| Msa1353050 | MtrunA17_Chr4g0020811 | 47.794 | 136 | 61 | 3 | 22 | 147 | 7 | 142 | 4.92e-40 | 134 |
| Msa1353050 | MtrunA17_Chr2g0320521 | 35.556 | 225 | 108 | 5 | 22 | 209 | 7 | 231 | 1.91e-39 | 135 |
| Msa1353050 | MtrunA17_Chr2g0297251 | 35.398 | 226 | 106 | 5 | 21 | 210 | 37 | 258 | 3.15e-39 | 135 |
| Msa1353050 | MtrunA17_Chr4g0065041 | 45.185 | 135 | 73 | 1 | 21 | 155 | 8 | 141 | 1.24e-38 | 134 |
| Msa1353050 | MtrunA17_Chr7g0230511 | 44.030 | 134 | 73 | 2 | 21 | 154 | 9 | 140 | 6.93e-37 | 129 |
| Msa1353050 | MtrunA17_Chr2g0320561 | 46.809 | 141 | 65 | 4 | 22 | 152 | 5 | 145 | 5.34e-35 | 124 |
| Msa1353050 | MtrunA17_Chr2g0320551 | 44.853 | 136 | 65 | 3 | 22 | 147 | 5 | 140 | 2.26e-34 | 120 |
| Msa1353050 | MtrunA17_Chr4g0052451 | 41.463 | 82 | 42 | 1 | 73 | 148 | 11 | 92 | 1.97e-19 | 79.7 |
| Msa1353050 | MtrunA17_Chr5g0434331 | 28.141 | 199 | 110 | 7 | 15 | 209 | 37 | 206 | 2.59e-18 | 79.7 |
| Msa1353050 | MtrunA17_Chr8g0386511 | 30.519 | 154 | 99 | 3 | 60 | 209 | 4 | 153 | 7.52e-17 | 74.7 |
| Msa1353050 | MtrunA17_Chr8g0392151 | 32.877 | 146 | 75 | 5 | 23 | 147 | 15 | 158 | 4.83e-16 | 74.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1353050 | AT4G17900.1 | 64.762 | 210 | 66 | 3 | 7 | 210 | 20 | 227 | 1.47e-95 | 278 |
| Msa1353050 | AT4G17900.2 | 66.667 | 198 | 58 | 3 | 19 | 210 | 18 | 213 | 4.83e-93 | 271 |
| Msa1353050 | AT1G32700.1 | 66.509 | 212 | 55 | 5 | 15 | 214 | 4 | 211 | 1.67e-91 | 267 |
| Msa1353050 | AT1G21000.1 | 49.174 | 242 | 81 | 5 | 10 | 209 | 5 | 246 | 3.65e-75 | 227 |
| Msa1353050 | AT1G21000.2 | 49.174 | 242 | 81 | 5 | 10 | 209 | 2 | 243 | 3.78e-75 | 227 |
| Msa1353050 | AT5G46710.3 | 53.883 | 206 | 86 | 4 | 13 | 209 | 4 | 209 | 2.83e-73 | 221 |
| Msa1353050 | AT5G46710.1 | 53.365 | 208 | 88 | 4 | 11 | 209 | 18 | 225 | 6.65e-73 | 221 |
| Msa1353050 | AT1G32700.2 | 66.477 | 176 | 45 | 4 | 49 | 214 | 1 | 172 | 2.75e-72 | 217 |
| Msa1353050 | AT1G76590.1 | 48.684 | 228 | 78 | 3 | 21 | 209 | 18 | 245 | 9.65e-71 | 216 |
| Msa1353050 | AT1G43000.2 | 45.495 | 222 | 102 | 3 | 7 | 209 | 2 | 223 | 3.34e-65 | 201 |
| Msa1353050 | AT1G43000.1 | 46.296 | 216 | 97 | 3 | 13 | 209 | 1 | 216 | 9.17e-65 | 199 |
| Msa1353050 | AT5G46710.2 | 59.420 | 138 | 55 | 1 | 11 | 147 | 18 | 155 | 1.16e-58 | 182 |
| Msa1353050 | AT2G27930.1 | 42.927 | 205 | 90 | 4 | 18 | 211 | 1 | 189 | 2.87e-51 | 164 |
| Msa1353050 | AT2G27930.4 | 42.927 | 205 | 90 | 4 | 18 | 211 | 1 | 189 | 2.87e-51 | 164 |
| Msa1353050 | AT2G27930.3 | 54.745 | 137 | 52 | 2 | 21 | 147 | 4 | 140 | 9.30e-48 | 155 |
| Msa1353050 | AT2G27930.2 | 54.745 | 137 | 52 | 2 | 21 | 147 | 4 | 140 | 9.30e-48 | 155 |
| Msa1353050 | AT2G12646.1 | 45.652 | 138 | 74 | 1 | 18 | 155 | 3 | 139 | 5.92e-40 | 137 |
| Msa1353050 | AT2G12646.2 | 45.652 | 138 | 74 | 1 | 18 | 155 | 3 | 139 | 5.92e-40 | 137 |
| Msa1353050 | AT2G12646.3 | 45.926 | 135 | 72 | 1 | 21 | 155 | 3 | 136 | 1.86e-39 | 136 |
| Msa1353050 | AT3G60670.1 | 45.455 | 132 | 71 | 1 | 16 | 147 | 2 | 132 | 1.73e-36 | 128 |
| Msa1353050 | AT1G31040.1 | 34.071 | 226 | 110 | 6 | 21 | 209 | 19 | 242 | 6.14e-35 | 124 |
| Msa1353050 | AT2G27930.5 | 43.243 | 148 | 58 | 3 | 74 | 211 | 61 | 192 | 1.19e-31 | 114 |
| Msa1353050 | AT2G27930.6 | 43.243 | 148 | 58 | 3 | 74 | 211 | 61 | 192 | 1.19e-31 | 114 |
| Msa1353050 | AT2G01818.1 | 32.127 | 221 | 126 | 6 | 12 | 209 | 2 | 221 | 1.27e-24 | 97.1 |
| Msa1353050 | AT2G01818.2 | 32.886 | 149 | 81 | 5 | 80 | 209 | 9 | 157 | 2.76e-12 | 62.8 |
Find 68 sgRNAs with CRISPR-Local
Find 143 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAATTCTTGTTGATGTAATT+TGG | 0.060988 | tig0013070:-11662 | None:intergenic |
| GTTTAAGTATTTAGTAAATA+AGG | 0.240485 | tig0013070:-13771 | None:intergenic |
| AATAAATGTTATTCATAATA+TGG | 0.276763 | tig0013070:+13927 | Msa1353050:three_prime_UTR |
| TGGTGAGATTGGCAGAATTA+TGG | 0.294442 | tig0013070:+13816 | Msa1353050:three_prime_UTR |
| TTCACAGACATGGCAAATAT+TGG | 0.300856 | tig0013070:-12921 | None:intergenic |
| AATTCTTGTTGATGTAATTT+GGG | 0.307393 | tig0013070:-11661 | None:intergenic |
| AATTACATCAACAAGAATTA+TGG | 0.311763 | tig0013070:+11665 | Msa1353050:exon |
| TTACTAAGATAGTACTATAT+TGG | 0.339364 | tig0013070:+11573 | Msa1353050:five_prime_UTR |
| CTTTCCTCCAAACCAAAACT+TGG | 0.356857 | tig0013070:+11616 | Msa1353050:five_prime_UTR |
| TATTTATTTACTCAGATAGT+TGG | 0.359410 | tig0013070:+13559 | Msa1353050:intron |
| TTATGATGGAAACCAAGTTT+TGG | 0.369868 | tig0013070:-11628 | None:intergenic |
| GAGGAAAATGTAGGAACTTT+GGG | 0.379553 | tig0013070:-11525 | None:intergenic |
| AGAGGAAAATGTAGGAACTT+TGG | 0.381616 | tig0013070:-11526 | None:intergenic |
| TCATTCACCTACTGCTCCCT+TGG | 0.389190 | tig0013070:+12959 | Msa1353050:CDS |
| GGGGATGGAGAAGGTGTAGT+TGG | 0.392811 | tig0013070:+11840 | Msa1353050:CDS |
| ACTTGAATTCGTGGTGAGAT+TGG | 0.403666 | tig0013070:+13805 | Msa1353050:three_prime_UTR |
| CTACTGCTCCCTTGGTTGTA+AGG | 0.404328 | tig0013070:+12967 | Msa1353050:CDS |
| CTTCATATCATGATGTGATA+AGG | 0.416229 | tig0013070:+12783 | Msa1353050:CDS |
| TTTAGAATTTCTACAACTTA+CGG | 0.422121 | tig0013070:+13856 | Msa1353050:three_prime_UTR |
| CAAAGATCACAGAGCTATCC+AGG | 0.430527 | tig0013070:+12037 | Msa1353050:CDS |
| ATTGTACATACTTGAATTCG+TGG | 0.442837 | tig0013070:+13796 | Msa1353050:three_prime_UTR |
| TTCTTGTTTGATAGATAAGA+AGG | 0.443037 | tig0013070:+12759 | Msa1353050:intron |
| TTTCTTCTGGAATTTCTTGG+AGG | 0.443249 | tig0013070:-13584 | None:intergenic |
| TTCATATCATGATGTGATAA+GGG | 0.444748 | tig0013070:+12784 | Msa1353050:CDS |
| AAAAGTTAAGTGAGAGAGAT+GGG | 0.446555 | tig0013070:+13608 | Msa1353050:CDS |
| TTGTAAGGTGGCGGTGTTGA+AGG | 0.453737 | tig0013070:-13697 | None:intergenic |
| TGGGCTATGATTTCTTATGA+TGG | 0.467092 | tig0013070:-11642 | None:intergenic |
| AATGTAGGAACTTTGGGAGT+GGG | 0.468759 | tig0013070:-11519 | None:intergenic |
| GTTCCACATAGAGCTCCAAT+AGG | 0.475327 | tig0013070:+13742 | Msa1353050:CDS |
| GAAAAGAAAGAGGAAAATGT+AGG | 0.478491 | tig0013070:-11534 | None:intergenic |
| ATGTAGGAACTTTGGGAGTG+GGG | 0.479755 | tig0013070:-11518 | None:intergenic |
| TTCCACATAGAGCTCCAATA+GGG | 0.487236 | tig0013070:+13743 | Msa1353050:CDS |
| AAGAACCTTGCTTGGAGAAG+TGG | 0.495841 | tig0013070:-11912 | None:intergenic |
| AAAATTGTCTATTGTGATTG+TGG | 0.499448 | tig0013070:+14049 | Msa1353050:three_prime_UTR |
| GTGACACCTTTGCCAGGCTT+AGG | 0.508847 | tig0013070:-12899 | None:intergenic |
| TTGTAGAGAGGAAAAGAAAG+AGG | 0.510018 | tig0013070:-11544 | None:intergenic |
| ACAGTGTAGGATTGATATGT+AGG | 0.510361 | tig0013070:-13904 | None:intergenic |
| TAGTAATTTAATTTGTAGAG+AGG | 0.511938 | tig0013070:-11556 | None:intergenic |
| AATAACATTTATTACAGTGT+AGG | 0.512457 | tig0013070:-13917 | None:intergenic |
| CCTTTGCCAGGCTTAGGCTG+AGG | 0.513021 | tig0013070:-12893 | None:intergenic |
| ATATTGGTGACACCTTTGCC+AGG | 0.513857 | tig0013070:-12905 | None:intergenic |
| ATTGAACAAAGAACCTTGCT+TGG | 0.519311 | tig0013070:-11920 | None:intergenic |
| AGTGAGAGAGATGGGTCAGA+TGG | 0.523449 | tig0013070:+13616 | Msa1353050:CDS |
| CAAAATTGCTAAGAGGAGGA+AGG | 0.525337 | tig0013070:+13717 | Msa1353050:CDS |
| GAAAGGCCTCAGCCTAAGCC+TGG | 0.525826 | tig0013070:+12887 | Msa1353050:CDS |
| AGATTGTGTTCTTGAATGAA+AGG | 0.538525 | tig0013070:+12870 | Msa1353050:CDS |
| TATTGCTTGGACTGTATGAA+TGG | 0.540936 | tig0013070:+11984 | Msa1353050:CDS |
| TGAATGCAATATGTATTGCT+TGG | 0.544713 | tig0013070:+11971 | Msa1353050:CDS |
| CACCTTACAAAATTGCTAAG+AGG | 0.547965 | tig0013070:+13710 | Msa1353050:CDS |
| ATGGACTATAGTTGCACTAG+TGG | 0.548254 | tig0013070:+13946 | Msa1353050:three_prime_UTR |
| TGCAACCACTTCTCCAAGCA+AGG | 0.549474 | tig0013070:+11907 | Msa1353050:CDS |
| ATGCGCAATATTGTACAAAG+TGG | 0.561449 | tig0013070:+13984 | Msa1353050:three_prime_UTR |
| GAAGGCTTCGTTCACAGACA+TGG | 0.567153 | tig0013070:-12931 | None:intergenic |
| AAAATTGCTAAGAGGAGGAA+GGG | 0.570406 | tig0013070:+13718 | Msa1353050:CDS |
| AAATGTAGGAACTTTGGGAG+TGG | 0.578691 | tig0013070:-11520 | None:intergenic |
| TGGAGAAGTGGTTGCAACCA+TGG | 0.580919 | tig0013070:-11900 | None:intergenic |
| CTTACAACCAAGGGAGCAGT+AGG | 0.590242 | tig0013070:-12966 | None:intergenic |
| CCTCAGCCTAAGCCTGGCAA+AGG | 0.590940 | tig0013070:+12893 | Msa1353050:CDS |
| AAGAAATCAAGTGGCCACCA+TGG | 0.599172 | tig0013070:+11883 | Msa1353050:CDS |
| AATGCATACCTTACAACCAA+GGG | 0.611602 | tig0013070:-12975 | None:intergenic |
| TGAATGAAGAAGAAATCAAG+TGG | 0.619967 | tig0013070:+11874 | Msa1353050:CDS |
| CTTACAAAATTGCTAAGAGG+AGG | 0.624645 | tig0013070:+13713 | Msa1353050:CDS |
| AGTAGGTGAATGAATCAAGA+AGG | 0.627686 | tig0013070:-12949 | None:intergenic |
| GATTGTGGAATAATCTAATG+AGG | 0.630038 | tig0013070:+14064 | Msa1353050:three_prime_UTR |
| TCCACATAGAGCTCCAATAG+GGG | 0.638714 | tig0013070:+13744 | Msa1353050:CDS |
| CCACATAGAGCTCCAATAGG+GGG | 0.648093 | tig0013070:+13745 | Msa1353050:CDS |
| CAATGCATACCTTACAACCA+AGG | 0.674127 | tig0013070:-12976 | None:intergenic |
| AGAAGTGGTTGCAACCATGG+TGG | 0.773987 | tig0013070:-11897 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAAATCATGAAAAAAAAA+TGG | - | tig0013070:11760-11779 | None:intergenic | 10.0% |
| !! | TTAATTATATGTATGTAATT+AGG | + | tig0013070:11818-11837 | Msa1353050:intron | 10.0% |
| !! | TAATTATATGTATGTAATTA+GGG | + | tig0013070:11819-11838 | Msa1353050:intron | 10.0% |
| !! | CAAAATAAAAATTTGAAAAA+TGG | - | tig0013070:13535-13554 | None:intergenic | 10.0% |
| !! | AATAAATGTTATTCATAATA+TGG | + | tig0013070:13927-13946 | Msa1353050:three_prime_UTR | 10.0% |
| !!! | GTTGTTTGATATTTTTAATT+TGG | + | tig0013070:11795-11814 | Msa1353050:intron | 15.0% |
| !! | AATTATATGTATGTAATTAG+GGG | + | tig0013070:11820-11839 | Msa1353050:intron | 15.0% |
| !!! | GTCAAAAACATTTTTTTAAT+TGG | - | tig0013070:12431-12450 | None:intergenic | 15.0% |
| !!! | TTTTAAATCAATTTTGTAAG+AGG | - | tig0013070:12605-12624 | None:intergenic | 15.0% |
| !!! | ATTTTACACTCAATTTTTAT+TGG | + | tig0013070:13222-13241 | Msa1353050:intron | 15.0% |
| !! | GTTTAAGTATTTAGTAAATA+AGG | - | tig0013070:13774-13793 | None:intergenic | 15.0% |
| !!! | TAGTAATTTAATTTGTAGAG+AGG | - | tig0013070:11559-11578 | None:intergenic | 20.0% |
| !! | TTACTAAGATAGTACTATAT+TGG | + | tig0013070:11573-11592 | Msa1353050:five_prime_UTR | 20.0% |
| !! | AATTCTTGTTGATGTAATTT+GGG | - | tig0013070:11664-11683 | None:intergenic | 20.0% |
| !! | TAATTCTTGTTGATGTAATT+TGG | - | tig0013070:11665-11684 | None:intergenic | 20.0% |
| !! | AATTACATCAACAAGAATTA+TGG | + | tig0013070:11665-11684 | Msa1353050:exon | 20.0% |
| !! | ATTATATGTATGTAATTAGG+GGG | + | tig0013070:11821-11840 | Msa1353050:intron | 20.0% |
| !!! | ATTTGAAATCTTCACAAAAT+TGG | - | tig0013070:12216-12235 | None:intergenic | 20.0% |
| !! | TAGAATCCATTAAAATACAT+TGG | - | tig0013070:12317-12336 | None:intergenic | 20.0% |
| !! | CACAATAATAAATTGTTTGA+TGG | - | tig0013070:12467-12486 | None:intergenic | 20.0% |
| !! | TGACTTTCATAAAATATAAG+AGG | + | tig0013070:12565-12584 | Msa1353050:intron | 20.0% |
| !! | ACCACATATATGATATAATA+TGG | + | tig0013070:12701-12720 | Msa1353050:intron | 20.0% |
| !! | CCACATATATGATATAATAT+GGG | + | tig0013070:12702-12721 | Msa1353050:intron | 20.0% |
| !! | AATGTTTGCATACTTATTAT+AGG | - | tig0013070:13318-13337 | None:intergenic | 20.0% |
| !!! | TAATAAGTATGCAAACATTT+TGG | + | tig0013070:13319-13338 | Msa1353050:intron | 20.0% |
| !!! | TGTTATACTTACTTTTTCAA+GGG | - | tig0013070:13362-13381 | None:intergenic | 20.0% |
| !!! | ATGTTATACTTACTTTTTCA+AGG | - | tig0013070:13363-13382 | None:intergenic | 20.0% |
| !! | TATTTATTTACTCAGATAGT+TGG | + | tig0013070:13559-13578 | Msa1353050:intron | 20.0% |
| !!! | TTTAGAATTTCTACAACTTA+CGG | + | tig0013070:13856-13875 | Msa1353050:three_prime_UTR | 20.0% |
| !! | AATAACATTTATTACAGTGT+AGG | - | tig0013070:13920-13939 | None:intergenic | 20.0% |
| ! | ATGTGTAGTATATGTTAAAG+GGG | - | tig0013070:11719-11738 | None:intergenic | 25.0% |
| ! | CATGTGTAGTATATGTTAAA+GGG | - | tig0013070:11720-11739 | None:intergenic | 25.0% |
| !!! | TATAAGTATCTTGTTTTACC+TGG | - | tig0013070:12058-12077 | None:intergenic | 25.0% |
| !!! | AATCAAAAGCTTTGAATTTG+AGG | + | tig0013070:12233-12252 | Msa1353050:intron | 25.0% |
| ! | AAAATATTTGTCTTCTGTGT+TGG | + | tig0013070:12337-12356 | Msa1353050:intron | 25.0% |
| ! | AATTATCACATCATGATTCA+TGG | - | tig0013070:12513-12532 | None:intergenic | 25.0% |
| ! | ATGAATCATGATGTGATAAT+TGG | + | tig0013070:12512-12531 | Msa1353050:intron | 25.0% |
| ! | CCCATATTATATCATATATG+TGG | - | tig0013070:12705-12724 | None:intergenic | 25.0% |
| !! | TTCTTGTTTGATAGATAAGA+AGG | + | tig0013070:12759-12778 | Msa1353050:intron | 25.0% |
| ! | TTCATATCATGATGTGATAA+GGG | + | tig0013070:12784-12803 | Msa1353050:CDS | 25.0% |
| !!! | AGAAATTTTTGGACATAACA+GGG | + | tig0013070:12819-12838 | Msa1353050:CDS | 25.0% |
| !!! | TGAAAGCAATTTTAACTTGA+TGG | - | tig0013070:13015-13034 | None:intergenic | 25.0% |
| ! | TCTAGGTAACGTTTAATATT+AGG | + | tig0013070:13285-13304 | Msa1353050:intron | 25.0% |
| !!! | TTTTTCAAGGGAAACAAATA+GGG | - | tig0013070:13350-13369 | None:intergenic | 25.0% |
| ! | GAGTTAATTAACACTCAAAT+TGG | + | tig0013070:13386-13405 | Msa1353050:intron | 25.0% |
| ! | GTCTTCAAAATTGTATTCAT+GGG | + | tig0013070:13408-13427 | Msa1353050:intron | 25.0% |
| !!! | TTTTTTCTTCTGGAATTTCT+TGG | - | tig0013070:13590-13609 | None:intergenic | 25.0% |
| !!! | CACTTAACTTTTTTTTCTTC+TGG | - | tig0013070:13600-13619 | None:intergenic | 25.0% |
| ! | AAAATTGTCTATTGTGATTG+TGG | + | tig0013070:14049-14068 | Msa1353050:three_prime_UTR | 25.0% |
| GAAAAGAAAGAGGAAAATGT+AGG | - | tig0013070:11537-11556 | None:intergenic | 30.0% | |
| !! | TTATGATGGAAACCAAGTTT+TGG | - | tig0013070:11631-11650 | None:intergenic | 30.0% |
| CCATGTGTAGTATATGTTAA+AGG | - | tig0013070:11721-11740 | None:intergenic | 30.0% | |
| CCTTTAACATATACTACACA+TGG | + | tig0013070:11718-11737 | Msa1353050:intron | 30.0% | |
| TGAATGAAGAAGAAATCAAG+TGG | + | tig0013070:11874-11893 | Msa1353050:CDS | 30.0% | |
| !! | CATATTGCATTCACTTTTGT+TGG | - | tig0013070:11964-11983 | None:intergenic | 30.0% |
| TGAATGCAATATGTATTGCT+TGG | + | tig0013070:11971-11990 | Msa1353050:CDS | 30.0% | |
| ATTACTTCATAGTGTCAATG+TGG | + | tig0013070:12147-12166 | Msa1353050:intron | 30.0% | |
| CTTCACAAAATTGGATGAAA+TGG | - | tig0013070:12207-12226 | None:intergenic | 30.0% | |
| CTTGTACACATTACTTTCTT+GGG | + | tig0013070:12284-12303 | Msa1353050:intron | 30.0% | |
| TTGTACACATTACTTTCTTG+GGG | + | tig0013070:12285-12304 | Msa1353050:intron | 30.0% | |
| !! | AAGGGTCCAATGTATTTTAA+TGG | + | tig0013070:12308-12327 | Msa1353050:intron | 30.0% |
| TGCAATTCAAAAGTCAACTA+TGG | + | tig0013070:12401-12420 | Msa1353050:intron | 30.0% | |
| ATTCAAAAGTCAACTATGGA+TGG | + | tig0013070:12405-12424 | Msa1353050:intron | 30.0% | |
| TGTGCAATTTAAATAGCCAT+CGG | + | tig0013070:12483-12502 | Msa1353050:intron | 30.0% | |
| CTTCATATCATGATGTGATA+AGG | + | tig0013070:12783-12802 | Msa1353050:CDS | 30.0% | |
| !! | GTCTGAGATACAGAAATTTT+TGG | + | tig0013070:12808-12827 | Msa1353050:CDS | 30.0% |
| !! | CAGAAATTTTTGGACATAAC+AGG | + | tig0013070:12818-12837 | Msa1353050:CDS | 30.0% |
| !! | GAAATTTTTGGACATAACAG+GGG | + | tig0013070:12820-12839 | Msa1353050:CDS | 30.0% |
| AGATTGTGTTCTTGAATGAA+AGG | + | tig0013070:12870-12889 | Msa1353050:CDS | 30.0% | |
| !!! | TTTTAACTTGATGGAGAGTT+GGG | - | tig0013070:13006-13025 | None:intergenic | 30.0% |
| !!! | ATTTTAACTTGATGGAGAGT+TGG | - | tig0013070:13007-13026 | None:intergenic | 30.0% |
| ! | TCCTGTATGTGTTAATGTTT+TGG | + | tig0013070:13193-13212 | Msa1353050:intron | 30.0% |
| ACCAAAACATTAACACATAC+AGG | - | tig0013070:13197-13216 | None:intergenic | 30.0% | |
| !!! | CTTTTTCAAGGGAAACAAAT+AGG | - | tig0013070:13351-13370 | None:intergenic | 30.0% |
| GGTCTTCAAAATTGTATTCA+TGG | + | tig0013070:13407-13426 | Msa1353050:intron | 30.0% | |
| AAAAAGTTAAGTGAGAGAGA+TGG | + | tig0013070:13607-13626 | Msa1353050:CDS | 30.0% | |
| AAAAGTTAAGTGAGAGAGAT+GGG | + | tig0013070:13608-13627 | Msa1353050:CDS | 30.0% | |
| ATTGTACATACTTGAATTCG+TGG | + | tig0013070:13796-13815 | Msa1353050:three_prime_UTR | 30.0% | |
| GAGGAAAATGTAGGAACTTT+GGG | - | tig0013070:11528-11547 | None:intergenic | 35.0% | |
| AGAGGAAAATGTAGGAACTT+TGG | - | tig0013070:11529-11548 | None:intergenic | 35.0% | |
| TTGTAGAGAGGAAAAGAAAG+AGG | - | tig0013070:11547-11566 | None:intergenic | 35.0% | |
| !!! | ATGGAAACCAAGTTTTGGTT+TGG | - | tig0013070:11626-11645 | None:intergenic | 35.0% |
| TGGGCTATGATTTCTTATGA+TGG | - | tig0013070:11645-11664 | None:intergenic | 35.0% | |
| TATGTATGTAATTAGGGGGA+TGG | + | tig0013070:11825-11844 | Msa1353050:intron | 35.0% | |
| ATTGAACAAAGAACCTTGCT+TGG | - | tig0013070:11923-11942 | None:intergenic | 35.0% | |
| TATTGCTTGGACTGTATGAA+TGG | + | tig0013070:11984-12003 | Msa1353050:CDS | 35.0% | |
| CCAAGAAAGTAATGTGTACA+AGG | - | tig0013070:12286-12305 | None:intergenic | 35.0% | |
| CCTTGTACACATTACTTTCT+TGG | + | tig0013070:12283-12302 | Msa1353050:intron | 35.0% | |
| GATAATTGGATGATTGCTCA+AGG | + | tig0013070:12526-12545 | Msa1353050:intron | 35.0% | |
| TTCACAGACATGGCAAATAT+TGG | - | tig0013070:12924-12943 | None:intergenic | 35.0% | |
| AGTAGGTGAATGAATCAAGA+AGG | - | tig0013070:12952-12971 | None:intergenic | 35.0% | |
| AATGCATACCTTACAACCAA+GGG | - | tig0013070:12978-12997 | None:intergenic | 35.0% | |
| AACGTTACCTAGATTGTTTG+AGG | - | tig0013070:13278-13297 | None:intergenic | 35.0% | |
| !! | TTTCTTCTGGAATTTCTTGG+AGG | - | tig0013070:13587-13606 | None:intergenic | 35.0% |
| ! | TTAGCAATTTTGTAAGGTGG+CGG | - | tig0013070:13709-13728 | None:intergenic | 35.0% |
| ! | CTCTTAGCAATTTTGTAAGG+TGG | - | tig0013070:13712-13731 | None:intergenic | 35.0% |
| CACCTTACAAAATTGCTAAG+AGG | + | tig0013070:13710-13729 | Msa1353050:CDS | 35.0% | |
| ! | CTCCTCTTAGCAATTTTGTA+AGG | - | tig0013070:13715-13734 | None:intergenic | 35.0% |
| CTTACAAAATTGCTAAGAGG+AGG | + | tig0013070:13713-13732 | Msa1353050:CDS | 35.0% | |
| AAAATTGCTAAGAGGAGGAA+GGG | + | tig0013070:13718-13737 | Msa1353050:CDS | 35.0% | |
| ACAGTGTAGGATTGATATGT+AGG | - | tig0013070:13907-13926 | None:intergenic | 35.0% | |
| ATGCGCAATATTGTACAAAG+TGG | + | tig0013070:13984-14003 | Msa1353050:three_prime_UTR | 35.0% | |
| ! | AATGTAGGAACTTTGGGAGT+GGG | - | tig0013070:11522-11541 | None:intergenic | 40.0% |
| ! | AAATGTAGGAACTTTGGGAG+TGG | - | tig0013070:11523-11542 | None:intergenic | 40.0% |
| CTTTCCTCCAAACCAAAACT+TGG | + | tig0013070:11616-11635 | Msa1353050:five_prime_UTR | 40.0% | |
| !!! | GAAACCAAGTTTTGGTTTGG+AGG | - | tig0013070:11623-11642 | None:intergenic | 40.0% |
| ACACATTACTTTCTTGGGGA+AGG | + | tig0013070:12289-12308 | Msa1353050:intron | 40.0% | |
| CACATTACTTTCTTGGGGAA+GGG | + | tig0013070:12290-12309 | Msa1353050:intron | 40.0% | |
| CAATGCATACCTTACAACCA+AGG | - | tig0013070:12979-12998 | None:intergenic | 40.0% | |
| TTTCTCATCGAACATGTGTC+TGG | + | tig0013070:13055-13074 | Msa1353050:intron | 40.0% | |
| GTTGTTGCCTCAAACAATCT+AGG | + | tig0013070:13268-13287 | Msa1353050:intron | 40.0% | |
| CAAAATTGCTAAGAGGAGGA+AGG | + | tig0013070:13717-13736 | Msa1353050:CDS | 40.0% | |
| TTCCACATAGAGCTCCAATA+GGG | + | tig0013070:13743-13762 | Msa1353050:CDS | 40.0% | |
| ACTTGAATTCGTGGTGAGAT+TGG | + | tig0013070:13805-13824 | Msa1353050:three_prime_UTR | 40.0% | |
| TGGTGAGATTGGCAGAATTA+TGG | + | tig0013070:13816-13835 | Msa1353050:three_prime_UTR | 40.0% | |
| ! | ATGGACTATAGTTGCACTAG+TGG | + | tig0013070:13946-13965 | Msa1353050:three_prime_UTR | 40.0% |
| ! | ATGTAGGAACTTTGGGAGTG+GGG | - | tig0013070:11521-11540 | None:intergenic | 45.0% |
| TGTAATTAGGGGGATGGAGA+AGG | + | tig0013070:11831-11850 | Msa1353050:intron | 45.0% | |
| AAGAAATCAAGTGGCCACCA+TGG | + | tig0013070:11883-11902 | Msa1353050:CDS | 45.0% | |
| AAGAACCTTGCTTGGAGAAG+TGG | - | tig0013070:11915-11934 | None:intergenic | 45.0% | |
| CAAAGATCACAGAGCTATCC+AGG | + | tig0013070:12037-12056 | Msa1353050:CDS | 45.0% | |
| CATGATTCATGGTGAACCGA+TGG | - | tig0013070:12502-12521 | None:intergenic | 45.0% | |
| ! | ATATTGGTGACACCTTTGCC+AGG | - | tig0013070:12908-12927 | None:intergenic | 45.0% |
| GTTCCACATAGAGCTCCAAT+AGG | + | tig0013070:13742-13761 | Msa1353050:CDS | 45.0% | |
| TCCACATAGAGCTCCAATAG+GGG | + | tig0013070:13744-13763 | Msa1353050:CDS | 45.0% | |
| TAAATAAGGCCTCCCCCTAT+TGG | - | tig0013070:13760-13779 | None:intergenic | 45.0% | |
| AGAAGTGGTTGCAACCATGG+TGG | - | tig0013070:11900-11919 | None:intergenic | 50.0% | |
| TGGAGAAGTGGTTGCAACCA+TGG | - | tig0013070:11903-11922 | None:intergenic | 50.0% | |
| TGCAACCACTTCTCCAAGCA+AGG | + | tig0013070:11907-11926 | Msa1353050:CDS | 50.0% | |
| GAAGGCTTCGTTCACAGACA+TGG | - | tig0013070:12934-12953 | None:intergenic | 50.0% | |
| TCATTCACCTACTGCTCCCT+TGG | + | tig0013070:12959-12978 | Msa1353050:CDS | 50.0% | |
| CTTACAACCAAGGGAGCAGT+AGG | - | tig0013070:12969-12988 | None:intergenic | 50.0% | |
| CTACTGCTCCCTTGGTTGTA+AGG | + | tig0013070:12967-12986 | Msa1353050:CDS | 50.0% | |
| AGTGAGAGAGATGGGTCAGA+TGG | + | tig0013070:13616-13635 | Msa1353050:CDS | 50.0% | |
| ! | TTGTAAGGTGGCGGTGTTGA+AGG | - | tig0013070:13700-13719 | None:intergenic | 50.0% |
| CCACATAGAGCTCCAATAGG+GGG | + | tig0013070:13745-13764 | Msa1353050:CDS | 50.0% | |
| ! | GGGGATGGAGAAGGTGTAGT+TGG | + | tig0013070:11840-11859 | Msa1353050:CDS | 55.0% |
| GTGACACCTTTGCCAGGCTT+AGG | - | tig0013070:12902-12921 | None:intergenic | 55.0% | |
| CCCCCTATTGGAGCTCTATG+TGG | - | tig0013070:13748-13767 | None:intergenic | 55.0% | |
| CATAGAGCTCCAATAGGGGG+AGG | + | tig0013070:13748-13767 | Msa1353050:CDS | 55.0% | |
| GAAAGGCCTCAGCCTAAGCC+TGG | + | tig0013070:12887-12906 | Msa1353050:CDS | 60.0% | |
| CCTTTGCCAGGCTTAGGCTG+AGG | - | tig0013070:12896-12915 | None:intergenic | 60.0% | |
| CCTCAGCCTAAGCCTGGCAA+AGG | + | tig0013070:12893-12912 | Msa1353050:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0013070 | gene | 11518 | 14086 | 11518 | ID=Msa1353050;Name=Msa1353050 |
| tig0013070 | mRNA | 11518 | 14086 | 11518 | ID=Msa1353050-mRNA-1;Parent=Msa1353050;Name=Msa1353050-mRNA-1;_AED=0.02;_eAED=0.02;_QI=166|1|1|1|1|1|4|303|215 |
| tig0013070 | exon | 11518 | 11686 | 11518 | ID=Msa1353050-mRNA-1:exon:8470;Parent=Msa1353050-mRNA-1 |
| tig0013070 | exon | 11840 | 12058 | 11840 | ID=Msa1353050-mRNA-1:exon:8471;Parent=Msa1353050-mRNA-1 |
| tig0013070 | exon | 12773 | 12988 | 12773 | ID=Msa1353050-mRNA-1:exon:8472;Parent=Msa1353050-mRNA-1 |
| tig0013070 | exon | 13574 | 14086 | 13574 | ID=Msa1353050-mRNA-1:exon:8473;Parent=Msa1353050-mRNA-1 |
| tig0013070 | five_prime_UTR | 11518 | 11683 | 11518 | ID=Msa1353050-mRNA-1:five_prime_utr;Parent=Msa1353050-mRNA-1 |
| tig0013070 | CDS | 11684 | 11686 | 11684 | ID=Msa1353050-mRNA-1:cds;Parent=Msa1353050-mRNA-1 |
| tig0013070 | CDS | 11840 | 12058 | 11840 | ID=Msa1353050-mRNA-1:cds;Parent=Msa1353050-mRNA-1 |
| tig0013070 | CDS | 12773 | 12988 | 12773 | ID=Msa1353050-mRNA-1:cds;Parent=Msa1353050-mRNA-1 |
| tig0013070 | CDS | 13574 | 13783 | 13574 | ID=Msa1353050-mRNA-1:cds;Parent=Msa1353050-mRNA-1 |
| tig0013070 | three_prime_UTR | 13784 | 14086 | 13784 | ID=Msa1353050-mRNA-1:three_prime_utr;Parent=Msa1353050-mRNA-1 |
| Gene Sequence |
| Protein sequence |
