Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0752800 | G7KC16 | 90.476 | 252 | 22 | 2 | 1 | 251 | 1 | 251 | 8.03e-156 | 442 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0752800 | TR | Others |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0752800 | Msa1356700 | 0.837184 | 6.036297e-57 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0752800 | MtrunA17_Chr5g0397361 | 90.476 | 252 | 22 | 2 | 1 | 251 | 1 | 251 | 1.55e-159 | 442 |
| Msa0752800 | MtrunA17_Chr8g0387241 | 49.010 | 202 | 70 | 5 | 65 | 240 | 97 | 291 | 3.07e-53 | 175 |
| Msa0752800 | MtrunA17_Chr2g0311591 | 54.545 | 88 | 37 | 1 | 148 | 232 | 143 | 230 | 1.93e-22 | 93.2 |
| Msa0752800 | MtrunA17_Chr2g0327621 | 37.013 | 154 | 56 | 4 | 90 | 221 | 70 | 204 | 5.56e-20 | 85.9 |
| Msa0752800 | MtrunA17_Chr1g0168401 | 47.917 | 96 | 41 | 2 | 141 | 236 | 292 | 378 | 1.11e-19 | 87.4 |
| Msa0752800 | MtrunA17_Chr1g0186171 | 51.948 | 77 | 37 | 0 | 139 | 215 | 283 | 359 | 5.60e-19 | 85.5 |
| Msa0752800 | MtrunA17_Chr1g0147111 | 48.276 | 87 | 38 | 2 | 138 | 220 | 194 | 277 | 5.77e-17 | 78.2 |
| Msa0752800 | MtrunA17_Chr4g0030421 | 53.125 | 64 | 30 | 0 | 158 | 221 | 21 | 84 | 6.86e-16 | 72.0 |
| Msa0752800 | MtrunA17_Chr3g0126721 | 35.075 | 134 | 71 | 3 | 104 | 222 | 148 | 280 | 3.33e-15 | 73.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0752800 | AT5G41380.1 | 48.649 | 185 | 71 | 7 | 58 | 221 | 83 | 264 | 1.71e-40 | 142 |
| Msa0752800 | AT1G63820.1 | 49.342 | 152 | 54 | 5 | 117 | 248 | 117 | 265 | 2.21e-35 | 128 |
| Msa0752800 | AT3G12890.1 | 52.128 | 94 | 42 | 2 | 154 | 247 | 121 | 211 | 7.23e-21 | 89.0 |
| Msa0752800 | AT1G04500.4 | 51.685 | 89 | 38 | 2 | 147 | 234 | 262 | 346 | 1.24e-19 | 87.4 |
| Msa0752800 | AT1G04500.1 | 51.685 | 89 | 38 | 2 | 147 | 234 | 262 | 346 | 1.24e-19 | 87.4 |
| Msa0752800 | AT1G04500.3 | 51.685 | 89 | 38 | 2 | 147 | 234 | 253 | 337 | 1.30e-19 | 87.0 |
| Msa0752800 | AT2G33350.2 | 66.667 | 57 | 19 | 0 | 163 | 219 | 301 | 357 | 5.28e-18 | 82.8 |
| Msa0752800 | AT2G33350.1 | 66.667 | 57 | 19 | 0 | 163 | 219 | 302 | 358 | 5.74e-18 | 82.8 |
| Msa0752800 | AT2G33350.4 | 66.667 | 57 | 19 | 0 | 163 | 219 | 290 | 346 | 6.56e-18 | 82.4 |
| Msa0752800 | AT2G33350.5 | 66.667 | 57 | 19 | 0 | 163 | 219 | 310 | 366 | 6.81e-18 | 82.8 |
| Msa0752800 | AT4G27900.1 | 48.315 | 89 | 37 | 3 | 138 | 222 | 178 | 261 | 4.08e-16 | 75.9 |
| Msa0752800 | AT4G27900.2 | 48.315 | 89 | 37 | 3 | 138 | 222 | 178 | 261 | 4.08e-16 | 75.9 |
| Msa0752800 | AT5G53420.1 | 44.318 | 88 | 47 | 2 | 129 | 216 | 177 | 262 | 2.64e-15 | 73.9 |
| Msa0752800 | AT5G53420.2 | 44.318 | 88 | 47 | 2 | 129 | 216 | 98 | 183 | 3.23e-15 | 72.0 |
| Msa0752800 | AT5G53420.5 | 44.318 | 88 | 47 | 2 | 129 | 216 | 98 | 183 | 3.23e-15 | 72.0 |
| Msa0752800 | AT5G53420.4 | 44.318 | 88 | 47 | 2 | 129 | 216 | 98 | 183 | 3.23e-15 | 72.0 |
| Msa0752800 | AT5G59990.1 | 41.463 | 123 | 62 | 3 | 136 | 250 | 119 | 239 | 1.01e-14 | 72.0 |
Find 52 sgRNAs with CRISPR-Local
Find 176 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATTCATGCCATTGGAAATT+TGG | 0.108434 | 5_2:+6551942 | None:intergenic |
| TGTTTGGGCTTGAATGTTTA+TGG | 0.196449 | 5_2:+6552255 | None:intergenic |
| ATTCATGCCATTGGAAATTT+GGG | 0.264246 | 5_2:+6551943 | None:intergenic |
| ATCATCATGAAGACGAGTTC+TGG | 0.270661 | 5_2:-6551080 | Msa0752800:CDS |
| CAAAGTAGGGCGTTACAATT+TGG | 0.279002 | 5_2:-6551589 | Msa0752800:CDS |
| GGATCATAAGAGACTTTGTT+TGG | 0.295719 | 5_2:+6552239 | None:intergenic |
| AGCTCCTCTGCATTAACTTT+TGG | 0.308354 | 5_2:+6552036 | None:intergenic |
| GGAAATTTCTCTACTTTGGA+TGG | 0.338370 | 5_2:-6552110 | Msa0752800:CDS |
| GAACTTCCTCCGGCTTCTCT+TGG | 0.364020 | 5_2:+6551533 | None:intergenic |
| GCTTGGAAATTTCTCTACTT+TGG | 0.370290 | 5_2:-6552114 | Msa0752800:CDS |
| TAAGCTTCAGAAGGAAAATC+AGG | 0.384761 | 5_2:+6551987 | None:intergenic |
| GAAGTTCAACAAGATTATTA+AGG | 0.398859 | 5_2:-6551517 | Msa0752800:intron |
| GTGCAGTGCAGGAGATTTGC+AGG | 0.405645 | 5_2:-6551874 | Msa0752800:intron |
| GATTGTCGGCTAGTGTCTTT+CGG | 0.419573 | 5_2:+6551184 | None:intergenic |
| ATTTAGGTTGATTTCATTGA+AGG | 0.428619 | 5_2:-6550941 | Msa0752800:intron |
| TAATCTTGTTGAACTTCCTC+CGG | 0.431668 | 5_2:+6551523 | None:intergenic |
| GAAAACTGAGGAATGTCAAA+TGG | 0.438264 | 5_2:-6552078 | Msa0752800:CDS |
| GCACGCCCTTCTTATTTGTC+CGG | 0.440631 | 5_2:+6551893 | None:intergenic |
| GATCATAAGAGACTTTGTTT+GGG | 0.452048 | 5_2:+6552240 | None:intergenic |
| TCTTCTCCAACCAGTGAGCT+TGG | 0.454671 | 5_2:-6552131 | Msa0752800:CDS |
| ACGTATGCGTGTTCGATTGT+CGG | 0.459741 | 5_2:+6551170 | None:intergenic |
| GAAATTTCTCTACTTTGGAT+GGG | 0.461348 | 5_2:-6552109 | Msa0752800:CDS |
| ATAAGAAGGGCGTGCAGTGC+AGG | 0.462306 | 5_2:-6551885 | Msa0752800:CDS |
| GATGAAGTAAACTTCAAAGT+AGG | 0.477302 | 5_2:-6551603 | Msa0752800:CDS |
| TCATCATGAAGACGAGTTCT+GGG | 0.484075 | 5_2:-6551079 | Msa0752800:intron |
| GATCAGAACATGGCAACACC+TGG | 0.484597 | 5_2:-6551636 | Msa0752800:intron |
| CTGTTTCAATGTAATTGAAA+GGG | 0.489672 | 5_2:+6552210 | None:intergenic |
| ACTGTTTCAATGTAATTGAA+AGG | 0.489675 | 5_2:+6552209 | None:intergenic |
| TTTAGGTTGATTTCATTGAA+GGG | 0.494868 | 5_2:-6550940 | Msa0752800:intron |
| GGGAGCTCAATTCATGCCAT+TGG | 0.496254 | 5_2:+6551934 | None:intergenic |
| GGCAACACCTGGGTCTCAAA+CGG | 0.500495 | 5_2:-6551625 | Msa0752800:CDS |
| GATATAGAGCCAAGAGAAGC+CGG | 0.504164 | 5_2:-6551542 | Msa0752800:CDS |
| ACTTCATCCGTTTGAGACCC+AGG | 0.512208 | 5_2:+6551618 | None:intergenic |
| TCTTCACCGGACAAATAAGA+AGG | 0.514231 | 5_2:-6551899 | Msa0752800:CDS |
| AGAGAAATTTCCAAGCTCAC+TGG | 0.521246 | 5_2:+6552121 | None:intergenic |
| TTACATTGAAACAGTTCAAG+AGG | 0.525691 | 5_2:-6552201 | Msa0752800:CDS |
| CCCGAAAATAGTTTCTTCAC+CGG | 0.538362 | 5_2:-6551912 | Msa0752800:CDS |
| ATGAAGTAAACTTCAAAGTA+GGG | 0.543162 | 5_2:-6551602 | Msa0752800:CDS |
| TGTTGGTGTGATCTTAATAG+AGG | 0.547693 | 5_2:+6550903 | None:intergenic |
| AAAACTGAGGAATGTCAAAT+GGG | 0.562447 | 5_2:-6552077 | Msa0752800:CDS |
| AAATTTCCAAGCTCACTGGT+TGG | 0.575257 | 5_2:+6552125 | None:intergenic |
| ATGTAATTGAAAGGGTAATG+AGG | 0.586254 | 5_2:+6552218 | None:intergenic |
| AGCTTACTATAACACACAGA+TGG | 0.607601 | 5_2:-6551970 | Msa0752800:CDS |
| TTCATGCCATTGGAAATTTG+GGG | 0.622889 | 5_2:+6551944 | None:intergenic |
| CTTCACCGGACAAATAAGAA+GGG | 0.624611 | 5_2:-6551898 | Msa0752800:CDS |
| TGGACTCCCCAAATTTCCAA+TGG | 0.637971 | 5_2:-6551950 | Msa0752800:CDS |
| ATCAGAACATGGCAACACCT+GGG | 0.639682 | 5_2:-6551635 | Msa0752800:intron |
| GTGTTATAGTAAGCTTCAGA+AGG | 0.641168 | 5_2:+6551978 | None:intergenic |
| GACAATCGAACACGCATACG+TGG | 0.645981 | 5_2:-6551168 | Msa0752800:CDS |
| TGGGTCTCGTTTGAAAACTG+AGG | 0.669045 | 5_2:-6552090 | Msa0752800:CDS |
| ACTACCAAAAGTTAATGCAG+AGG | 0.669632 | 5_2:-6552040 | Msa0752800:CDS |
| ATAGAGCCAAGAGAAGCCGG+AGG | 0.708071 | 5_2:-6551539 | Msa0752800:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTCATTTTTTAAATGTA+GGG | - | chr5_2:6551460-6551479 | Msa0752800:intron | 10.0% |
| !!! | TTTAATTTTATCTGTATTAA+AGG | - | chr5_2:6551540-6551559 | Msa0752800:CDS | 10.0% |
| !!! | ATTTTCATTTTTTAAATGTA+GGG | - | chr5_2:6551460-6551479 | Msa0752800:intron | 10.0% |
| !!! | TTTAATTTTATCTGTATTAA+AGG | - | chr5_2:6551540-6551559 | Msa0752800:CDS | 10.0% |
| !! | TTCAGATTAAAAAATGTATA+TGG | - | chr5_2:6551413-6551432 | Msa0752800:intron | 15.0% |
| !! | ATGATTAAATTAATACGTAT+CGG | + | chr5_2:6551442-6551461 | None:intergenic | 15.0% |
| !!! | CATTTTCATTTTTTAAATGT+AGG | - | chr5_2:6551459-6551478 | Msa0752800:intron | 15.0% |
| !! | TATATATAACATTATAACAG+TGG | + | chr5_2:6551796-6551815 | None:intergenic | 15.0% |
| !! | ATTTAGAAACAAAAAATATG+TGG | + | chr5_2:6551958-6551977 | None:intergenic | 15.0% |
| !!! | ATTTTTTGTTTCTAAATATG+TGG | - | chr5_2:6551961-6551980 | Msa0752800:CDS | 15.0% |
| !!! | TATTATTGAGGTTTTTATTT+AGG | - | chr5_2:6552255-6552274 | Msa0752800:CDS | 15.0% |
| !! | TTCAGATTAAAAAATGTATA+TGG | - | chr5_2:6551413-6551432 | Msa0752800:intron | 15.0% |
| !! | ATGATTAAATTAATACGTAT+CGG | + | chr5_2:6551442-6551461 | None:intergenic | 15.0% |
| !!! | CATTTTCATTTTTTAAATGT+AGG | - | chr5_2:6551459-6551478 | Msa0752800:intron | 15.0% |
| !! | TATATATAACATTATAACAG+TGG | + | chr5_2:6551796-6551815 | None:intergenic | 15.0% |
| !! | ATTTAGAAACAAAAAATATG+TGG | + | chr5_2:6551958-6551977 | None:intergenic | 15.0% |
| !!! | ATTTTTTGTTTCTAAATATG+TGG | - | chr5_2:6551961-6551980 | Msa0752800:CDS | 15.0% |
| !!! | TATTATTGAGGTTTTTATTT+AGG | - | chr5_2:6552255-6552274 | Msa0752800:CDS | 15.0% |
| !! | AAAAAATATATGGTAAACCA+CGG | + | chr5_2:6551380-6551399 | None:intergenic | 20.0% |
| !! | TAGATGCTCAAAAAAATATA+TGG | + | chr5_2:6551390-6551409 | None:intergenic | 20.0% |
| !! | TCAAATAATAGACATAAACA+CGG | + | chr5_2:6551494-6551513 | None:intergenic | 20.0% |
| !! | ACTTTACTAGTAATAATTGA+AGG | - | chr5_2:6551901-6551920 | Msa0752800:CDS | 20.0% |
| !!! | TCTTTTGTTGTTTTTAATTG+TGG | - | chr5_2:6551986-6552005 | Msa0752800:CDS | 20.0% |
| !! | AAAAAATATATGGTAAACCA+CGG | + | chr5_2:6551380-6551399 | None:intergenic | 20.0% |
| !! | TAGATGCTCAAAAAAATATA+TGG | + | chr5_2:6551390-6551409 | None:intergenic | 20.0% |
| !! | TCAAATAATAGACATAAACA+CGG | + | chr5_2:6551494-6551513 | None:intergenic | 20.0% |
| !! | ACTTTACTAGTAATAATTGA+AGG | - | chr5_2:6551901-6551920 | Msa0752800:CDS | 20.0% |
| !!! | TCTTTTGTTGTTTTTAATTG+TGG | - | chr5_2:6551986-6552005 | Msa0752800:CDS | 20.0% |
| ! | CTGTTTCAATGTAATTGAAA+GGG | + | chr5_2:6551005-6551024 | None:intergenic | 25.0% |
| ! | ACTGTTTCAATGTAATTGAA+AGG | + | chr5_2:6551006-6551025 | None:intergenic | 25.0% |
| !! | GTCTATTATTTGATAGTAGA+TGG | - | chr5_2:6551501-6551520 | Msa0752800:intron | 25.0% |
| ! | ATGAAGTAAACTTCAAAGTA+GGG | - | chr5_2:6551610-6551629 | Msa0752800:CDS | 25.0% |
| ! | GAAGTTCAACAAGATTATTA+AGG | - | chr5_2:6551695-6551714 | Msa0752800:intron | 25.0% |
| !!! | ACATTTTTTTTTACTTCCGA+GGG | + | chr5_2:6551832-6551851 | None:intergenic | 25.0% |
| !!! | AACATTTTTTTTTACTTCCG+AGG | + | chr5_2:6551833-6551852 | None:intergenic | 25.0% |
| !! | ATGTGGTGTTAATATTATTG+AGG | - | chr5_2:6552243-6552262 | Msa0752800:CDS | 25.0% |
| !!! | ATTTAGGTTGATTTCATTGA+AGG | - | chr5_2:6552271-6552290 | Msa0752800:CDS | 25.0% |
| !!! | TTTAGGTTGATTTCATTGAA+GGG | - | chr5_2:6552272-6552291 | Msa0752800:CDS | 25.0% |
| ! | CTGTTTCAATGTAATTGAAA+GGG | + | chr5_2:6551005-6551024 | None:intergenic | 25.0% |
| ! | ACTGTTTCAATGTAATTGAA+AGG | + | chr5_2:6551006-6551025 | None:intergenic | 25.0% |
| !! | GTCTATTATTTGATAGTAGA+TGG | - | chr5_2:6551501-6551520 | Msa0752800:intron | 25.0% |
| ! | ATGAAGTAAACTTCAAAGTA+GGG | - | chr5_2:6551610-6551629 | Msa0752800:CDS | 25.0% |
| ! | GAAGTTCAACAAGATTATTA+AGG | - | chr5_2:6551695-6551714 | Msa0752800:intron | 25.0% |
| !!! | ACATTTTTTTTTACTTCCGA+GGG | + | chr5_2:6551832-6551851 | None:intergenic | 25.0% |
| !!! | AACATTTTTTTTTACTTCCG+AGG | + | chr5_2:6551833-6551852 | None:intergenic | 25.0% |
| !! | ATGTGGTGTTAATATTATTG+AGG | - | chr5_2:6552243-6552262 | Msa0752800:CDS | 25.0% |
| !!! | ATTTAGGTTGATTTCATTGA+AGG | - | chr5_2:6552271-6552290 | Msa0752800:CDS | 25.0% |
| !!! | TTTAGGTTGATTTCATTGAA+GGG | - | chr5_2:6552272-6552291 | Msa0752800:CDS | 25.0% |
| ! | GATCATAAGAGACTTTGTTT+GGG | + | chr5_2:6550975-6550994 | None:intergenic | 30.0% |
| ATGTAATTGAAAGGGTAATG+AGG | + | chr5_2:6550997-6551016 | None:intergenic | 30.0% | |
| TTACATTGAAACAGTTCAAG+AGG | - | chr5_2:6551011-6551030 | Msa0752800:intron | 30.0% | |
| AGAAAAAGAAAAGAAGGAAG+AGG | + | chr5_2:6551064-6551083 | None:intergenic | 30.0% | |
| TGGAGAAGAAAAAGAAAAGA+AGG | + | chr5_2:6551070-6551089 | None:intergenic | 30.0% | |
| GAAATTTCTCTACTTTGGAT+GGG | - | chr5_2:6551103-6551122 | Msa0752800:CDS | 30.0% | |
| AAAACTGAGGAATGTCAAAT+GGG | - | chr5_2:6551135-6551154 | Msa0752800:CDS | 30.0% | |
| ATTCATGCCATTGGAAATTT+GGG | + | chr5_2:6551272-6551291 | None:intergenic | 30.0% | |
| AATTCATGCCATTGGAAATT+TGG | + | chr5_2:6551273-6551292 | None:intergenic | 30.0% | |
| GATGAAGTAAACTTCAAAGT+AGG | - | chr5_2:6551609-6551628 | Msa0752800:CDS | 30.0% | |
| ATAAAAGAAAGTTGTTCCCT+CGG | - | chr5_2:6551813-6551832 | Msa0752800:intron | 30.0% | |
| !!! | TTTTCTGTTTTTGAACACAC+AGG | + | chr5_2:6552110-6552129 | None:intergenic | 30.0% |
| GTTTAATACTTGCATCAATG+TGG | - | chr5_2:6552226-6552245 | Msa0752800:CDS | 30.0% | |
| ! | GATCATAAGAGACTTTGTTT+GGG | + | chr5_2:6550975-6550994 | None:intergenic | 30.0% |
| ATGTAATTGAAAGGGTAATG+AGG | + | chr5_2:6550997-6551016 | None:intergenic | 30.0% | |
| TTACATTGAAACAGTTCAAG+AGG | - | chr5_2:6551011-6551030 | Msa0752800:intron | 30.0% | |
| AGAAAAAGAAAAGAAGGAAG+AGG | + | chr5_2:6551064-6551083 | None:intergenic | 30.0% | |
| TGGAGAAGAAAAAGAAAAGA+AGG | + | chr5_2:6551070-6551089 | None:intergenic | 30.0% | |
| GAAATTTCTCTACTTTGGAT+GGG | - | chr5_2:6551103-6551122 | Msa0752800:CDS | 30.0% | |
| AAAACTGAGGAATGTCAAAT+GGG | - | chr5_2:6551135-6551154 | Msa0752800:CDS | 30.0% | |
| ATTCATGCCATTGGAAATTT+GGG | + | chr5_2:6551272-6551291 | None:intergenic | 30.0% | |
| AATTCATGCCATTGGAAATT+TGG | + | chr5_2:6551273-6551292 | None:intergenic | 30.0% | |
| GATGAAGTAAACTTCAAAGT+AGG | - | chr5_2:6551609-6551628 | Msa0752800:CDS | 30.0% | |
| ATAAAAGAAAGTTGTTCCCT+CGG | - | chr5_2:6551813-6551832 | Msa0752800:intron | 30.0% | |
| !!! | TTTTCTGTTTTTGAACACAC+AGG | + | chr5_2:6552110-6552129 | None:intergenic | 30.0% |
| GTTTAATACTTGCATCAATG+TGG | - | chr5_2:6552226-6552245 | Msa0752800:CDS | 30.0% | |
| TGTTTGGGCTTGAATGTTTA+TGG | + | chr5_2:6550960-6550979 | None:intergenic | 35.0% | |
| GGATCATAAGAGACTTTGTT+TGG | + | chr5_2:6550976-6550995 | None:intergenic | 35.0% | |
| GCTTGGAAATTTCTCTACTT+TGG | - | chr5_2:6551098-6551117 | Msa0752800:CDS | 35.0% | |
| GGAAATTTCTCTACTTTGGA+TGG | - | chr5_2:6551102-6551121 | Msa0752800:CDS | 35.0% | |
| GAAAACTGAGGAATGTCAAA+TGG | - | chr5_2:6551134-6551153 | Msa0752800:CDS | 35.0% | |
| !! | CTGCATTAACTTTTGGTAGT+AGG | + | chr5_2:6551172-6551191 | None:intergenic | 35.0% |
| ACTACCAAAAGTTAATGCAG+AGG | - | chr5_2:6551172-6551191 | Msa0752800:CDS | 35.0% | |
| TAAGCTTCAGAAGGAAAATC+AGG | + | chr5_2:6551228-6551247 | None:intergenic | 35.0% | |
| GTGTTATAGTAAGCTTCAGA+AGG | + | chr5_2:6551237-6551256 | None:intergenic | 35.0% | |
| AGCTTACTATAACACACAGA+TGG | - | chr5_2:6551242-6551261 | Msa0752800:intron | 35.0% | |
| TTCATGCCATTGGAAATTTG+GGG | + | chr5_2:6551271-6551290 | None:intergenic | 35.0% | |
| ! | TCCGGTGAAGAAACTATTTT+CGG | + | chr5_2:6551304-6551323 | None:intergenic | 35.0% |
| GTTAAAATAACCTAACACCG+TGG | - | chr5_2:6551360-6551379 | Msa0752800:intron | 35.0% | |
| GCTGTTTATTGATCAGAACA+TGG | - | chr5_2:6551566-6551585 | Msa0752800:CDS | 35.0% | |
| TAATCTTGTTGAACTTCCTC+CGG | + | chr5_2:6551692-6551711 | None:intergenic | 35.0% | |
| ! | GTTTTTGAACACACAGGTTT+TGG | + | chr5_2:6552104-6552123 | None:intergenic | 35.0% |
| TGTTTGGGCTTGAATGTTTA+TGG | + | chr5_2:6550960-6550979 | None:intergenic | 35.0% | |
| GGATCATAAGAGACTTTGTT+TGG | + | chr5_2:6550976-6550995 | None:intergenic | 35.0% | |
| GCTTGGAAATTTCTCTACTT+TGG | - | chr5_2:6551098-6551117 | Msa0752800:CDS | 35.0% | |
| GGAAATTTCTCTACTTTGGA+TGG | - | chr5_2:6551102-6551121 | Msa0752800:CDS | 35.0% | |
| GAAAACTGAGGAATGTCAAA+TGG | - | chr5_2:6551134-6551153 | Msa0752800:CDS | 35.0% | |
| !! | CTGCATTAACTTTTGGTAGT+AGG | + | chr5_2:6551172-6551191 | None:intergenic | 35.0% |
| ACTACCAAAAGTTAATGCAG+AGG | - | chr5_2:6551172-6551191 | Msa0752800:CDS | 35.0% | |
| TAAGCTTCAGAAGGAAAATC+AGG | + | chr5_2:6551228-6551247 | None:intergenic | 35.0% | |
| GTGTTATAGTAAGCTTCAGA+AGG | + | chr5_2:6551237-6551256 | None:intergenic | 35.0% | |
| AGCTTACTATAACACACAGA+TGG | - | chr5_2:6551242-6551261 | Msa0752800:intron | 35.0% | |
| TTCATGCCATTGGAAATTTG+GGG | + | chr5_2:6551271-6551290 | None:intergenic | 35.0% | |
| ! | TCCGGTGAAGAAACTATTTT+CGG | + | chr5_2:6551304-6551323 | None:intergenic | 35.0% |
| GTTAAAATAACCTAACACCG+TGG | - | chr5_2:6551360-6551379 | Msa0752800:intron | 35.0% | |
| GCTGTTTATTGATCAGAACA+TGG | - | chr5_2:6551566-6551585 | Msa0752800:CDS | 35.0% | |
| TAATCTTGTTGAACTTCCTC+CGG | + | chr5_2:6551692-6551711 | None:intergenic | 35.0% | |
| ! | GTTTTTGAACACACAGGTTT+TGG | + | chr5_2:6552104-6552123 | None:intergenic | 35.0% |
| AAATTTCCAAGCTCACTGGT+TGG | + | chr5_2:6551090-6551109 | None:intergenic | 40.0% | |
| AGAGAAATTTCCAAGCTCAC+TGG | + | chr5_2:6551094-6551113 | None:intergenic | 40.0% | |
| ! | AGCTCCTCTGCATTAACTTT+TGG | + | chr5_2:6551179-6551198 | None:intergenic | 40.0% |
| ! | GGTGAAGAAACTATTTTCGG+GGG | + | chr5_2:6551301-6551320 | None:intergenic | 40.0% |
| ! | CGGTGAAGAAACTATTTTCG+GGG | + | chr5_2:6551302-6551321 | None:intergenic | 40.0% |
| ! | CCGGTGAAGAAACTATTTTC+GGG | + | chr5_2:6551303-6551322 | None:intergenic | 40.0% |
| CCCGAAAATAGTTTCTTCAC+CGG | - | chr5_2:6551300-6551319 | Msa0752800:intron | 40.0% | |
| TCTTCACCGGACAAATAAGA+AGG | - | chr5_2:6551313-6551332 | Msa0752800:intron | 40.0% | |
| CTTCACCGGACAAATAAGAA+GGG | - | chr5_2:6551314-6551333 | Msa0752800:intron | 40.0% | |
| ATATGGTAAACCACGGTGTT+AGG | + | chr5_2:6551373-6551392 | None:intergenic | 40.0% | |
| ! | CAAAGTAGGGCGTTACAATT+TGG | - | chr5_2:6551623-6551642 | Msa0752800:CDS | 40.0% |
| ATGCTCCAACATTACCTGAA+AGG | - | chr5_2:6551750-6551769 | Msa0752800:intron | 40.0% | |
| ! | ATGCTCCTTTCAGGTAATGT+TGG | + | chr5_2:6551758-6551777 | None:intergenic | 40.0% |
| AGTTCAGATATGCTCCTTTC+AGG | + | chr5_2:6551767-6551786 | None:intergenic | 40.0% | |
| ATCATCATGAAGACGAGTTC+TGG | - | chr5_2:6552132-6552151 | Msa0752800:CDS | 40.0% | |
| TCATCATGAAGACGAGTTCT+GGG | - | chr5_2:6552133-6552152 | Msa0752800:CDS | 40.0% | |
| AAATTTCCAAGCTCACTGGT+TGG | + | chr5_2:6551090-6551109 | None:intergenic | 40.0% | |
| AGAGAAATTTCCAAGCTCAC+TGG | + | chr5_2:6551094-6551113 | None:intergenic | 40.0% | |
| ! | AGCTCCTCTGCATTAACTTT+TGG | + | chr5_2:6551179-6551198 | None:intergenic | 40.0% |
| ! | GGTGAAGAAACTATTTTCGG+GGG | + | chr5_2:6551301-6551320 | None:intergenic | 40.0% |
| ! | CGGTGAAGAAACTATTTTCG+GGG | + | chr5_2:6551302-6551321 | None:intergenic | 40.0% |
| ! | CCGGTGAAGAAACTATTTTC+GGG | + | chr5_2:6551303-6551322 | None:intergenic | 40.0% |
| CCCGAAAATAGTTTCTTCAC+CGG | - | chr5_2:6551300-6551319 | Msa0752800:intron | 40.0% | |
| TCTTCACCGGACAAATAAGA+AGG | - | chr5_2:6551313-6551332 | Msa0752800:intron | 40.0% | |
| CTTCACCGGACAAATAAGAA+GGG | - | chr5_2:6551314-6551333 | Msa0752800:intron | 40.0% | |
| ATATGGTAAACCACGGTGTT+AGG | + | chr5_2:6551373-6551392 | None:intergenic | 40.0% | |
| ! | CAAAGTAGGGCGTTACAATT+TGG | - | chr5_2:6551623-6551642 | Msa0752800:CDS | 40.0% |
| ATGCTCCAACATTACCTGAA+AGG | - | chr5_2:6551750-6551769 | Msa0752800:intron | 40.0% | |
| ! | ATGCTCCTTTCAGGTAATGT+TGG | + | chr5_2:6551758-6551777 | None:intergenic | 40.0% |
| AGTTCAGATATGCTCCTTTC+AGG | + | chr5_2:6551767-6551786 | None:intergenic | 40.0% | |
| ATCATCATGAAGACGAGTTC+TGG | - | chr5_2:6552132-6552151 | Msa0752800:CDS | 40.0% | |
| TCATCATGAAGACGAGTTCT+GGG | - | chr5_2:6552133-6552152 | Msa0752800:CDS | 40.0% | |
| TGGGTCTCGTTTGAAAACTG+AGG | - | chr5_2:6551122-6551141 | Msa0752800:CDS | 45.0% | |
| TGGACTCCCCAAATTTCCAA+TGG | - | chr5_2:6551262-6551281 | Msa0752800:intron | 45.0% | |
| ATCAGAACATGGCAACACCT+GGG | - | chr5_2:6551577-6551596 | Msa0752800:CDS | 45.0% | |
| GATATAGAGCCAAGAGAAGC+CGG | - | chr5_2:6551670-6551689 | Msa0752800:intron | 45.0% | |
| TTTCGGCATGCATACTGTTG+TGG | + | chr5_2:6552014-6552033 | None:intergenic | 45.0% | |
| ! | GATTGTCGGCTAGTGTCTTT+CGG | + | chr5_2:6552031-6552050 | None:intergenic | 45.0% |
| ACGTATGCGTGTTCGATTGT+CGG | + | chr5_2:6552045-6552064 | None:intergenic | 45.0% | |
| !!! | CACAGGTTTTGGAATCTCGT+TGG | + | chr5_2:6552093-6552112 | None:intergenic | 45.0% |
| TGGGTCTCGTTTGAAAACTG+AGG | - | chr5_2:6551122-6551141 | Msa0752800:CDS | 45.0% | |
| TGGACTCCCCAAATTTCCAA+TGG | - | chr5_2:6551262-6551281 | Msa0752800:intron | 45.0% | |
| ATCAGAACATGGCAACACCT+GGG | - | chr5_2:6551577-6551596 | Msa0752800:CDS | 45.0% | |
| GATATAGAGCCAAGAGAAGC+CGG | - | chr5_2:6551670-6551689 | Msa0752800:intron | 45.0% | |
| TTTCGGCATGCATACTGTTG+TGG | + | chr5_2:6552014-6552033 | None:intergenic | 45.0% | |
| ! | GATTGTCGGCTAGTGTCTTT+CGG | + | chr5_2:6552031-6552050 | None:intergenic | 45.0% |
| ACGTATGCGTGTTCGATTGT+CGG | + | chr5_2:6552045-6552064 | None:intergenic | 45.0% | |
| !!! | CACAGGTTTTGGAATCTCGT+TGG | + | chr5_2:6552093-6552112 | None:intergenic | 45.0% |
| TCTTCTCCAACCAGTGAGCT+TGG | - | chr5_2:6551081-6551100 | Msa0752800:CDS | 50.0% | |
| GGGAGCTCAATTCATGCCAT+TGG | + | chr5_2:6551281-6551300 | None:intergenic | 50.0% | |
| ! | GCACGCCCTTCTTATTTGTC+CGG | + | chr5_2:6551322-6551341 | None:intergenic | 50.0% |
| GATCAGAACATGGCAACACC+TGG | - | chr5_2:6551576-6551595 | Msa0752800:CDS | 50.0% | |
| ! | ACTTCATCCGTTTGAGACCC+AGG | + | chr5_2:6551597-6551616 | None:intergenic | 50.0% |
| GACAATCGAACACGCATACG+TGG | - | chr5_2:6552044-6552063 | Msa0752800:CDS | 50.0% | |
| TCTTCTCCAACCAGTGAGCT+TGG | - | chr5_2:6551081-6551100 | Msa0752800:CDS | 50.0% | |
| GGGAGCTCAATTCATGCCAT+TGG | + | chr5_2:6551281-6551300 | None:intergenic | 50.0% | |
| ! | GCACGCCCTTCTTATTTGTC+CGG | + | chr5_2:6551322-6551341 | None:intergenic | 50.0% |
| GATCAGAACATGGCAACACC+TGG | - | chr5_2:6551576-6551595 | Msa0752800:CDS | 50.0% | |
| ! | ACTTCATCCGTTTGAGACCC+AGG | + | chr5_2:6551597-6551616 | None:intergenic | 50.0% |
| GACAATCGAACACGCATACG+TGG | - | chr5_2:6552044-6552063 | Msa0752800:CDS | 50.0% | |
| ! | ATAAGAAGGGCGTGCAGTGC+AGG | - | chr5_2:6551327-6551346 | Msa0752800:intron | 55.0% |
| GTGCAGTGCAGGAGATTTGC+AGG | - | chr5_2:6551338-6551357 | Msa0752800:intron | 55.0% | |
| GGCAACACCTGGGTCTCAAA+CGG | - | chr5_2:6551587-6551606 | Msa0752800:CDS | 55.0% | |
| ATAGAGCCAAGAGAAGCCGG+AGG | - | chr5_2:6551673-6551692 | Msa0752800:intron | 55.0% | |
| GAACTTCCTCCGGCTTCTCT+TGG | + | chr5_2:6551682-6551701 | None:intergenic | 55.0% | |
| ! | ATAAGAAGGGCGTGCAGTGC+AGG | - | chr5_2:6551327-6551346 | Msa0752800:intron | 55.0% |
| GTGCAGTGCAGGAGATTTGC+AGG | - | chr5_2:6551338-6551357 | Msa0752800:intron | 55.0% | |
| GGCAACACCTGGGTCTCAAA+CGG | - | chr5_2:6551587-6551606 | Msa0752800:CDS | 55.0% | |
| ATAGAGCCAAGAGAAGCCGG+AGG | - | chr5_2:6551673-6551692 | Msa0752800:intron | 55.0% | |
| GAACTTCCTCCGGCTTCTCT+TGG | + | chr5_2:6551682-6551701 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 6550916 | 6552318 | 6550916 | ID=Msa0752800;Name=Msa0752800 |
| chr5_2 | mRNA | 6550916 | 6552318 | 6550916 | ID=Msa0752800-mRNA-1;Parent=Msa0752800;Name=Msa0752800-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|0|0|1|1|1|4|0|251 |
| chr5_2 | exon | 6551875 | 6552318 | 6551875 | ID=Msa0752800-mRNA-1:exon:2775;Parent=Msa0752800-mRNA-1 |
| chr5_2 | exon | 6551518 | 6551652 | 6551518 | ID=Msa0752800-mRNA-1:exon:2774;Parent=Msa0752800-mRNA-1 |
| chr5_2 | exon | 6551080 | 6551214 | 6551080 | ID=Msa0752800-mRNA-1:exon:2773;Parent=Msa0752800-mRNA-1 |
| chr5_2 | exon | 6550916 | 6550957 | 6550916 | ID=Msa0752800-mRNA-1:exon:2772;Parent=Msa0752800-mRNA-1 |
| chr5_2 | CDS | 6551875 | 6552318 | 6551875 | ID=Msa0752800-mRNA-1:cds;Parent=Msa0752800-mRNA-1 |
| chr5_2 | CDS | 6551518 | 6551652 | 6551518 | ID=Msa0752800-mRNA-1:cds;Parent=Msa0752800-mRNA-1 |
| chr5_2 | CDS | 6551080 | 6551214 | 6551080 | ID=Msa0752800-mRNA-1:cds;Parent=Msa0752800-mRNA-1 |
| chr5_2 | CDS | 6550916 | 6550957 | 6550916 | ID=Msa0752800-mRNA-1:cds;Parent=Msa0752800-mRNA-1 |
| Gene Sequence |
| Protein sequence |
