Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1356700 | XP_003611074.1 | 91.270 | 252 | 20 | 2 | 1 | 251 | 1 | 251 | 1.33e-157 | 447 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1356700 | G7KC16 | 91.270 | 252 | 20 | 2 | 1 | 251 | 1 | 251 | 6.38e-158 | 447 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1356700 | TR | Others |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0752800 | Msa1356700 | 0.837184 | 6.036297e-57 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1356700 | MtrunA17_Chr5g0397361 | 91.270 | 252 | 20 | 2 | 1 | 251 | 1 | 251 | 1.23e-161 | 447 |
| Msa1356700 | MtrunA17_Chr8g0387241 | 49.505 | 202 | 69 | 5 | 65 | 240 | 97 | 291 | 3.82e-54 | 177 |
| Msa1356700 | MtrunA17_Chr2g0311591 | 54.545 | 88 | 37 | 1 | 148 | 232 | 143 | 230 | 1.87e-22 | 93.2 |
| Msa1356700 | MtrunA17_Chr2g0327621 | 41.739 | 115 | 45 | 2 | 129 | 221 | 90 | 204 | 1.04e-19 | 85.1 |
| Msa1356700 | MtrunA17_Chr1g0168401 | 47.917 | 96 | 41 | 2 | 141 | 236 | 292 | 378 | 1.09e-19 | 87.4 |
| Msa1356700 | MtrunA17_Chr1g0186171 | 51.948 | 77 | 37 | 0 | 139 | 215 | 283 | 359 | 5.44e-19 | 85.5 |
| Msa1356700 | MtrunA17_Chr1g0147111 | 48.276 | 87 | 38 | 2 | 138 | 220 | 194 | 277 | 5.44e-17 | 78.6 |
| Msa1356700 | MtrunA17_Chr4g0030421 | 53.125 | 64 | 30 | 0 | 158 | 221 | 21 | 84 | 6.51e-16 | 72.4 |
| Msa1356700 | MtrunA17_Chr3g0126721 | 35.075 | 134 | 71 | 3 | 104 | 222 | 148 | 280 | 2.63e-15 | 73.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1356700 | AT5G41380.1 | 48.370 | 184 | 73 | 6 | 58 | 221 | 83 | 264 | 2.57e-40 | 141 |
| Msa1356700 | AT1G63820.1 | 49.342 | 152 | 54 | 5 | 117 | 248 | 117 | 265 | 2.51e-35 | 128 |
| Msa1356700 | AT3G12890.1 | 51.546 | 97 | 44 | 2 | 154 | 250 | 121 | 214 | 1.17e-21 | 90.9 |
| Msa1356700 | AT1G04500.4 | 33.484 | 221 | 107 | 8 | 34 | 234 | 146 | 346 | 4.72e-20 | 88.6 |
| Msa1356700 | AT1G04500.1 | 33.484 | 221 | 107 | 8 | 34 | 234 | 146 | 346 | 4.72e-20 | 88.6 |
| Msa1356700 | AT1G04500.3 | 33.484 | 221 | 107 | 8 | 34 | 234 | 137 | 337 | 4.81e-20 | 88.6 |
| Msa1356700 | AT2G33350.2 | 66.667 | 57 | 19 | 0 | 163 | 219 | 301 | 357 | 4.99e-18 | 82.8 |
| Msa1356700 | AT2G33350.1 | 66.667 | 57 | 19 | 0 | 163 | 219 | 302 | 358 | 5.91e-18 | 82.8 |
| Msa1356700 | AT2G33350.4 | 66.667 | 57 | 19 | 0 | 163 | 219 | 290 | 346 | 6.13e-18 | 82.8 |
| Msa1356700 | AT2G33350.5 | 66.667 | 57 | 19 | 0 | 163 | 219 | 310 | 366 | 6.36e-18 | 82.8 |
| Msa1356700 | AT4G27900.1 | 48.315 | 89 | 37 | 3 | 138 | 222 | 178 | 261 | 3.92e-16 | 76.3 |
| Msa1356700 | AT4G27900.2 | 48.315 | 89 | 37 | 3 | 138 | 222 | 178 | 261 | 3.92e-16 | 76.3 |
| Msa1356700 | AT5G53420.1 | 44.318 | 88 | 47 | 2 | 129 | 216 | 177 | 262 | 2.39e-15 | 73.9 |
| Msa1356700 | AT5G53420.2 | 44.318 | 88 | 47 | 2 | 129 | 216 | 98 | 183 | 2.94e-15 | 72.0 |
| Msa1356700 | AT5G53420.5 | 44.318 | 88 | 47 | 2 | 129 | 216 | 98 | 183 | 2.94e-15 | 72.0 |
| Msa1356700 | AT5G53420.4 | 44.318 | 88 | 47 | 2 | 129 | 216 | 98 | 183 | 2.94e-15 | 72.0 |
| Msa1356700 | AT5G59990.1 | 43.103 | 116 | 56 | 3 | 136 | 243 | 119 | 232 | 4.39e-14 | 70.1 |
Find 53 sgRNAs with CRISPR-Local
Find 182 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATTCATGCCATTGGAAATT+TGG | 0.108434 | tig0015859:+4623 | None:intergenic |
| TGTTTGGGCTTGAATGTTTA+TGG | 0.196449 | tig0015859:+4936 | None:intergenic |
| ATTCATGCCATTGGAAATTT+GGG | 0.264246 | tig0015859:+4624 | None:intergenic |
| ATCATCATGAAGACGAGTTC+TGG | 0.270661 | tig0015859:-3756 | Msa1356700:CDS |
| CAAAGTAGGGCGTTACAATT+TGG | 0.279002 | tig0015859:-4270 | Msa1356700:CDS |
| GGATCATAAGAGACTTTGTT+TGG | 0.295719 | tig0015859:+4920 | None:intergenic |
| AGCTCCTCTGCATTAACTTT+TGG | 0.308354 | tig0015859:+4717 | None:intergenic |
| GGAAATTTCTCTACTTTGGA+TGG | 0.338370 | tig0015859:-4791 | Msa1356700:CDS |
| GAACTTCCTCCGGCTTCTCT+TGG | 0.364020 | tig0015859:+4214 | None:intergenic |
| GCTTGGAAATTTCTCTACTT+TGG | 0.370290 | tig0015859:-4795 | Msa1356700:CDS |
| GAAGTTCAACAAGATTATTA+AGG | 0.398859 | tig0015859:-4198 | Msa1356700:intron |
| GTGCAGTGCAGGAGATTTGC+AGG | 0.405645 | tig0015859:-4555 | Msa1356700:intron |
| GATTGTCGGCTAGTGTCTTT+CGG | 0.419573 | tig0015859:+3860 | None:intergenic |
| TAAGCTTCAGAAGGAAAATC+AGG | 0.424848 | tig0015859:+4668 | None:intergenic |
| ATTTAGGTTGATTTCATTGA+AGG | 0.428619 | tig0015859:-3617 | Msa1356700:intron |
| TAATCTTGTTGAACTTCCTC+CGG | 0.431668 | tig0015859:+4204 | None:intergenic |
| GGGAGTCCATCTGTGTGTTA+TGG | 0.434607 | tig0015859:+4645 | None:intergenic |
| GAAAACTGAGGAATGTCAAA+TGG | 0.438264 | tig0015859:-4759 | Msa1356700:CDS |
| GCACGCCCTTCTTATTTGTC+CGG | 0.440631 | tig0015859:+4574 | None:intergenic |
| TGTTGTTGTGATCTTAATAG+AGG | 0.449547 | tig0015859:+3579 | None:intergenic |
| GATCATAAGAGACTTTGTTT+GGG | 0.452048 | tig0015859:+4921 | None:intergenic |
| TCTTCTCCAACCAGTGAGCT+TGG | 0.454671 | tig0015859:-4812 | Msa1356700:CDS |
| ACGTATGCGTGTTCGATTGT+CGG | 0.459741 | tig0015859:+3846 | None:intergenic |
| GAAATTTCTCTACTTTGGAT+GGG | 0.461348 | tig0015859:-4790 | Msa1356700:CDS |
| ATAAGAAGGGCGTGCAGTGC+AGG | 0.462306 | tig0015859:-4566 | Msa1356700:CDS |
| GATGAAGTAAACTTCAAAGT+AGG | 0.477302 | tig0015859:-4284 | Msa1356700:CDS |
| TCATCATGAAGACGAGTTCT+GGG | 0.484075 | tig0015859:-3755 | Msa1356700:intron |
| GATCAGAACATGGCAACACC+TGG | 0.484597 | tig0015859:-4317 | Msa1356700:intron |
| CTGTTTCAATGTAATTGAAA+GGG | 0.489672 | tig0015859:+4891 | None:intergenic |
| ACTGTTTCAATGTAATTGAA+AGG | 0.489675 | tig0015859:+4890 | None:intergenic |
| TTTAGGTTGATTTCATTGAA+GGG | 0.494868 | tig0015859:-3616 | Msa1356700:intron |
| GGGAGCTCAATTCATGCCAT+TGG | 0.496254 | tig0015859:+4615 | None:intergenic |
| GGCAACACCTGGGTCTCAAA+CGG | 0.500495 | tig0015859:-4306 | Msa1356700:CDS |
| GATATAGAGCCAAGAGAAGC+CGG | 0.504164 | tig0015859:-4223 | Msa1356700:CDS |
| ACTTCATCCGTTTGAGACCC+AGG | 0.512208 | tig0015859:+4299 | None:intergenic |
| TCTTCACCGGACAAATAAGA+AGG | 0.514231 | tig0015859:-4580 | Msa1356700:CDS |
| AGAGAAATTTCCAAGCTCAC+TGG | 0.521246 | tig0015859:+4802 | None:intergenic |
| TTACATTGAAACAGTTCAAG+AGG | 0.525691 | tig0015859:-4882 | Msa1356700:CDS |
| CCCGAAAATAGTTTCTTCAC+CGG | 0.538362 | tig0015859:-4593 | Msa1356700:CDS |
| ATGAAGTAAACTTCAAAGTA+GGG | 0.543162 | tig0015859:-4283 | Msa1356700:CDS |
| AAAACTGAGGAATGTCAAAT+GGG | 0.562447 | tig0015859:-4758 | Msa1356700:CDS |
| AAATTTCCAAGCTCACTGGT+TGG | 0.575257 | tig0015859:+4806 | None:intergenic |
| ATGTAATTGAAAGGGTAATG+AGG | 0.586254 | tig0015859:+4899 | None:intergenic |
| AGCTTACCATAACACACAGA+TGG | 0.590460 | tig0015859:-4651 | Msa1356700:CDS |
| TTCATGCCATTGGAAATTTG+GGG | 0.622889 | tig0015859:+4625 | None:intergenic |
| CTTCACCGGACAAATAAGAA+GGG | 0.624611 | tig0015859:-4579 | Msa1356700:CDS |
| TGGACTCCCCAAATTTCCAA+TGG | 0.637971 | tig0015859:-4631 | Msa1356700:CDS |
| GTGTTATGGTAAGCTTCAGA+AGG | 0.638279 | tig0015859:+4659 | None:intergenic |
| ATCAGAACATGGCAACACCT+GGG | 0.639682 | tig0015859:-4316 | Msa1356700:intron |
| GACAATCGAACACGCATACG+TGG | 0.645981 | tig0015859:-3844 | Msa1356700:CDS |
| TGGGTCTCGTTTGAAAACTG+AGG | 0.669045 | tig0015859:-4771 | Msa1356700:CDS |
| ACTACCAAAAGTTAATGCAG+AGG | 0.669632 | tig0015859:-4721 | Msa1356700:CDS |
| ATAGAGCCAAGAGAAGCCGG+AGG | 0.708071 | tig0015859:-4220 | Msa1356700:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTCATTTTTTAAATGTA+GGG | - | tig0015859:4136-4155 | Msa1356700:intron | 10.0% |
| !!! | TTTAATTTTATCTGTATTAA+AGG | - | tig0015859:4216-4235 | Msa1356700:CDS | 10.0% |
| !!! | ATTTTCATTTTTTAAATGTA+GGG | - | tig0015859:4136-4155 | Msa1356700:intron | 10.0% |
| !!! | TTTAATTTTATCTGTATTAA+AGG | - | tig0015859:4216-4235 | Msa1356700:CDS | 10.0% |
| !! | TTCAGATTAAAAAATGTATA+TGG | - | tig0015859:4089-4108 | Msa1356700:intron | 15.0% |
| !!! | CATTTTCATTTTTTAAATGT+AGG | - | tig0015859:4135-4154 | Msa1356700:intron | 15.0% |
| !! | ACTAGTAATAAAATAATTGA+AGG | - | tig0015859:4582-4601 | Msa1356700:CDS | 15.0% |
| !! | ATTTAGAAACAAAAAATATG+TGG | + | tig0015859:4639-4658 | None:intergenic | 15.0% |
| !!! | ATTTTTTGTTTCTAAATATG+TGG | - | tig0015859:4642-4661 | Msa1356700:CDS | 15.0% |
| !!! | TATTATTGAGGTTTTTATTT+AGG | - | tig0015859:4936-4955 | Msa1356700:CDS | 15.0% |
| !! | TTCAGATTAAAAAATGTATA+TGG | - | tig0015859:4089-4108 | Msa1356700:intron | 15.0% |
| !!! | CATTTTCATTTTTTAAATGT+AGG | - | tig0015859:4135-4154 | Msa1356700:intron | 15.0% |
| !! | ACTAGTAATAAAATAATTGA+AGG | - | tig0015859:4582-4601 | Msa1356700:CDS | 15.0% |
| !! | ATTTAGAAACAAAAAATATG+TGG | + | tig0015859:4639-4658 | None:intergenic | 15.0% |
| !!! | ATTTTTTGTTTCTAAATATG+TGG | - | tig0015859:4642-4661 | Msa1356700:CDS | 15.0% |
| !!! | TATTATTGAGGTTTTTATTT+AGG | - | tig0015859:4936-4955 | Msa1356700:CDS | 15.0% |
| !! | TCAAATAATAGACATAAACA+CGG | + | tig0015859:4170-4189 | None:intergenic | 20.0% |
| !! | TGTATATAACATTATAACAG+TGG | + | tig0015859:4472-4491 | None:intergenic | 20.0% |
| !!! | TCTTTTGTTGTTTTTAATTG+TGG | - | tig0015859:4667-4686 | Msa1356700:CDS | 20.0% |
| !! | TCAAATAATAGACATAAACA+CGG | + | tig0015859:4170-4189 | None:intergenic | 20.0% |
| !! | TGTATATAACATTATAACAG+TGG | + | tig0015859:4472-4491 | None:intergenic | 20.0% |
| !!! | TCTTTTGTTGTTTTTAATTG+TGG | - | tig0015859:4667-4686 | Msa1356700:CDS | 20.0% |
| ! | CTGTTTCAATGTAATTGAAA+GGG | + | tig0015859:3681-3700 | None:intergenic | 25.0% |
| ! | ACTGTTTCAATGTAATTGAA+AGG | + | tig0015859:3682-3701 | None:intergenic | 25.0% |
| ! | AAAATATATATGGTAAGCCA+CGG | + | tig0015859:4056-4075 | None:intergenic | 25.0% |
| ! | TGGATGCTCAAAAATATATA+TGG | + | tig0015859:4066-4085 | None:intergenic | 25.0% |
| !!! | ACATTTTTTAATCTGAAGTG+TGG | + | tig0015859:4086-4105 | None:intergenic | 25.0% |
| !! | GTCTATTATTTGATAGTAGA+TGG | - | tig0015859:4177-4196 | Msa1356700:intron | 25.0% |
| ! | ATGAAGTAAACTTCAAAGTA+GGG | - | tig0015859:4286-4305 | Msa1356700:CDS | 25.0% |
| ! | GAAGTTCAACAAGATTATTA+AGG | - | tig0015859:4371-4390 | Msa1356700:intron | 25.0% |
| !!! | ACATTTTTTTTTACTTCCGA+GGG | + | tig0015859:4508-4527 | None:intergenic | 25.0% |
| !!! | AACATTTTTTTTTACTTCCG+AGG | + | tig0015859:4509-4528 | None:intergenic | 25.0% |
| !! | ATGTGGTGTTAATATTATTG+AGG | - | tig0015859:4924-4943 | Msa1356700:CDS | 25.0% |
| !!! | ATTTAGGTTGATTTCATTGA+AGG | - | tig0015859:4952-4971 | Msa1356700:CDS | 25.0% |
| !!! | TTTAGGTTGATTTCATTGAA+GGG | - | tig0015859:4953-4972 | Msa1356700:CDS | 25.0% |
| ! | CTGTTTCAATGTAATTGAAA+GGG | + | tig0015859:3681-3700 | None:intergenic | 25.0% |
| ! | ACTGTTTCAATGTAATTGAA+AGG | + | tig0015859:3682-3701 | None:intergenic | 25.0% |
| ! | AAAATATATATGGTAAGCCA+CGG | + | tig0015859:4056-4075 | None:intergenic | 25.0% |
| ! | TGGATGCTCAAAAATATATA+TGG | + | tig0015859:4066-4085 | None:intergenic | 25.0% |
| !!! | ACATTTTTTAATCTGAAGTG+TGG | + | tig0015859:4086-4105 | None:intergenic | 25.0% |
| !! | GTCTATTATTTGATAGTAGA+TGG | - | tig0015859:4177-4196 | Msa1356700:intron | 25.0% |
| ! | ATGAAGTAAACTTCAAAGTA+GGG | - | tig0015859:4286-4305 | Msa1356700:CDS | 25.0% |
| ! | GAAGTTCAACAAGATTATTA+AGG | - | tig0015859:4371-4390 | Msa1356700:intron | 25.0% |
| !!! | ACATTTTTTTTTACTTCCGA+GGG | + | tig0015859:4508-4527 | None:intergenic | 25.0% |
| !!! | AACATTTTTTTTTACTTCCG+AGG | + | tig0015859:4509-4528 | None:intergenic | 25.0% |
| !! | ATGTGGTGTTAATATTATTG+AGG | - | tig0015859:4924-4943 | Msa1356700:CDS | 25.0% |
| !!! | ATTTAGGTTGATTTCATTGA+AGG | - | tig0015859:4952-4971 | Msa1356700:CDS | 25.0% |
| !!! | TTTAGGTTGATTTCATTGAA+GGG | - | tig0015859:4953-4972 | Msa1356700:CDS | 25.0% |
| ! | GATCATAAGAGACTTTGTTT+GGG | + | tig0015859:3651-3670 | None:intergenic | 30.0% |
| ATGTAATTGAAAGGGTAATG+AGG | + | tig0015859:3673-3692 | None:intergenic | 30.0% | |
| TTACATTGAAACAGTTCAAG+AGG | - | tig0015859:3687-3706 | Msa1356700:intron | 30.0% | |
| AGAAAAAGAAAAGAAGGAAG+AGG | + | tig0015859:3740-3759 | None:intergenic | 30.0% | |
| TGGAGAAGAAAAAGAAAAGA+AGG | + | tig0015859:3746-3765 | None:intergenic | 30.0% | |
| GAAATTTCTCTACTTTGGAT+GGG | - | tig0015859:3779-3798 | Msa1356700:CDS | 30.0% | |
| AAAACTGAGGAATGTCAAAT+GGG | - | tig0015859:3811-3830 | Msa1356700:CDS | 30.0% | |
| ATTCATGCCATTGGAAATTT+GGG | + | tig0015859:3948-3967 | None:intergenic | 30.0% | |
| AATTCATGCCATTGGAAATT+TGG | + | tig0015859:3949-3968 | None:intergenic | 30.0% | |
| GATGAAGTAAACTTCAAAGT+AGG | - | tig0015859:4285-4304 | Msa1356700:CDS | 30.0% | |
| !!! | TTTTCTGTTTTTGAACACAC+AGG | + | tig0015859:4791-4810 | None:intergenic | 30.0% |
| GTTTAATACTTGCATCAATG+TGG | - | tig0015859:4907-4926 | Msa1356700:CDS | 30.0% | |
| ! | GATCATAAGAGACTTTGTTT+GGG | + | tig0015859:3651-3670 | None:intergenic | 30.0% |
| ATGTAATTGAAAGGGTAATG+AGG | + | tig0015859:3673-3692 | None:intergenic | 30.0% | |
| TTACATTGAAACAGTTCAAG+AGG | - | tig0015859:3687-3706 | Msa1356700:intron | 30.0% | |
| AGAAAAAGAAAAGAAGGAAG+AGG | + | tig0015859:3740-3759 | None:intergenic | 30.0% | |
| TGGAGAAGAAAAAGAAAAGA+AGG | + | tig0015859:3746-3765 | None:intergenic | 30.0% | |
| GAAATTTCTCTACTTTGGAT+GGG | - | tig0015859:3779-3798 | Msa1356700:CDS | 30.0% | |
| AAAACTGAGGAATGTCAAAT+GGG | - | tig0015859:3811-3830 | Msa1356700:CDS | 30.0% | |
| ATTCATGCCATTGGAAATTT+GGG | + | tig0015859:3948-3967 | None:intergenic | 30.0% | |
| AATTCATGCCATTGGAAATT+TGG | + | tig0015859:3949-3968 | None:intergenic | 30.0% | |
| GATGAAGTAAACTTCAAAGT+AGG | - | tig0015859:4285-4304 | Msa1356700:CDS | 30.0% | |
| !!! | TTTTCTGTTTTTGAACACAC+AGG | + | tig0015859:4791-4810 | None:intergenic | 30.0% |
| GTTTAATACTTGCATCAATG+TGG | - | tig0015859:4907-4926 | Msa1356700:CDS | 30.0% | |
| TGTTTGGGCTTGAATGTTTA+TGG | + | tig0015859:3636-3655 | None:intergenic | 35.0% | |
| GGATCATAAGAGACTTTGTT+TGG | + | tig0015859:3652-3671 | None:intergenic | 35.0% | |
| GCTTGGAAATTTCTCTACTT+TGG | - | tig0015859:3774-3793 | Msa1356700:CDS | 35.0% | |
| GGAAATTTCTCTACTTTGGA+TGG | - | tig0015859:3778-3797 | Msa1356700:CDS | 35.0% | |
| GAAAACTGAGGAATGTCAAA+TGG | - | tig0015859:3810-3829 | Msa1356700:CDS | 35.0% | |
| !! | CTGCATTAACTTTTGGTAGT+AGG | + | tig0015859:3848-3867 | None:intergenic | 35.0% |
| ACTACCAAAAGTTAATGCAG+AGG | - | tig0015859:3848-3867 | Msa1356700:CDS | 35.0% | |
| TAAGCTTCAGAAGGAAAATC+AGG | + | tig0015859:3904-3923 | None:intergenic | 35.0% | |
| TTCATGCCATTGGAAATTTG+GGG | + | tig0015859:3947-3966 | None:intergenic | 35.0% | |
| ! | TCCGGTGAAGAAACTATTTT+CGG | + | tig0015859:3980-3999 | None:intergenic | 35.0% |
| GTTAAAATAACCTAACACCG+TGG | - | tig0015859:4036-4055 | Msa1356700:intron | 35.0% | |
| GCTGTTTATTGATCAGAACA+TGG | - | tig0015859:4242-4261 | Msa1356700:CDS | 35.0% | |
| TAATCTTGTTGAACTTCCTC+CGG | + | tig0015859:4368-4387 | None:intergenic | 35.0% | |
| ACAAAAGAAAGTTGTTCCCT+CGG | - | tig0015859:4489-4508 | Msa1356700:intron | 35.0% | |
| ! | GTTTTTGAACACACAGGTTT+TGG | + | tig0015859:4785-4804 | None:intergenic | 35.0% |
| TGTTTGGGCTTGAATGTTTA+TGG | + | tig0015859:3636-3655 | None:intergenic | 35.0% | |
| GGATCATAAGAGACTTTGTT+TGG | + | tig0015859:3652-3671 | None:intergenic | 35.0% | |
| GCTTGGAAATTTCTCTACTT+TGG | - | tig0015859:3774-3793 | Msa1356700:CDS | 35.0% | |
| GGAAATTTCTCTACTTTGGA+TGG | - | tig0015859:3778-3797 | Msa1356700:CDS | 35.0% | |
| GAAAACTGAGGAATGTCAAA+TGG | - | tig0015859:3810-3829 | Msa1356700:CDS | 35.0% | |
| !! | CTGCATTAACTTTTGGTAGT+AGG | + | tig0015859:3848-3867 | None:intergenic | 35.0% |
| ACTACCAAAAGTTAATGCAG+AGG | - | tig0015859:3848-3867 | Msa1356700:CDS | 35.0% | |
| TAAGCTTCAGAAGGAAAATC+AGG | + | tig0015859:3904-3923 | None:intergenic | 35.0% | |
| TTCATGCCATTGGAAATTTG+GGG | + | tig0015859:3947-3966 | None:intergenic | 35.0% | |
| ! | TCCGGTGAAGAAACTATTTT+CGG | + | tig0015859:3980-3999 | None:intergenic | 35.0% |
| GTTAAAATAACCTAACACCG+TGG | - | tig0015859:4036-4055 | Msa1356700:intron | 35.0% | |
| GCTGTTTATTGATCAGAACA+TGG | - | tig0015859:4242-4261 | Msa1356700:CDS | 35.0% | |
| TAATCTTGTTGAACTTCCTC+CGG | + | tig0015859:4368-4387 | None:intergenic | 35.0% | |
| ACAAAAGAAAGTTGTTCCCT+CGG | - | tig0015859:4489-4508 | Msa1356700:intron | 35.0% | |
| ! | GTTTTTGAACACACAGGTTT+TGG | + | tig0015859:4785-4804 | None:intergenic | 35.0% |
| AAATTTCCAAGCTCACTGGT+TGG | + | tig0015859:3766-3785 | None:intergenic | 40.0% | |
| AGAGAAATTTCCAAGCTCAC+TGG | + | tig0015859:3770-3789 | None:intergenic | 40.0% | |
| ! | AGCTCCTCTGCATTAACTTT+TGG | + | tig0015859:3855-3874 | None:intergenic | 40.0% |
| GTGTTATGGTAAGCTTCAGA+AGG | + | tig0015859:3913-3932 | None:intergenic | 40.0% | |
| AGCTTACCATAACACACAGA+TGG | - | tig0015859:3918-3937 | Msa1356700:intron | 40.0% | |
| ! | GGTGAAGAAACTATTTTCGG+GGG | + | tig0015859:3977-3996 | None:intergenic | 40.0% |
| ! | CGGTGAAGAAACTATTTTCG+GGG | + | tig0015859:3978-3997 | None:intergenic | 40.0% |
| ! | CCGGTGAAGAAACTATTTTC+GGG | + | tig0015859:3979-3998 | None:intergenic | 40.0% |
| CCCGAAAATAGTTTCTTCAC+CGG | - | tig0015859:3976-3995 | Msa1356700:intron | 40.0% | |
| TCTTCACCGGACAAATAAGA+AGG | - | tig0015859:3989-4008 | Msa1356700:intron | 40.0% | |
| CTTCACCGGACAAATAAGAA+GGG | - | tig0015859:3990-4009 | Msa1356700:intron | 40.0% | |
| ! | CAAAGTAGGGCGTTACAATT+TGG | - | tig0015859:4299-4318 | Msa1356700:CDS | 40.0% |
| ATGCTCCAACATTACCTGAA+AGG | - | tig0015859:4426-4445 | Msa1356700:intron | 40.0% | |
| TGCTCCAACATTACCTGAAA+GGG | - | tig0015859:4427-4446 | Msa1356700:intron | 40.0% | |
| ! | ATACCCCTTTCAGGTAATGT+TGG | + | tig0015859:4434-4453 | None:intergenic | 40.0% |
| AGTTCAGATATACCCCTTTC+AGG | + | tig0015859:4443-4462 | None:intergenic | 40.0% | |
| ATCATCATGAAGACGAGTTC+TGG | - | tig0015859:4813-4832 | Msa1356700:CDS | 40.0% | |
| TCATCATGAAGACGAGTTCT+GGG | - | tig0015859:4814-4833 | Msa1356700:CDS | 40.0% | |
| AAATTTCCAAGCTCACTGGT+TGG | + | tig0015859:3766-3785 | None:intergenic | 40.0% | |
| AGAGAAATTTCCAAGCTCAC+TGG | + | tig0015859:3770-3789 | None:intergenic | 40.0% | |
| ! | AGCTCCTCTGCATTAACTTT+TGG | + | tig0015859:3855-3874 | None:intergenic | 40.0% |
| GTGTTATGGTAAGCTTCAGA+AGG | + | tig0015859:3913-3932 | None:intergenic | 40.0% | |
| AGCTTACCATAACACACAGA+TGG | - | tig0015859:3918-3937 | Msa1356700:intron | 40.0% | |
| ! | GGTGAAGAAACTATTTTCGG+GGG | + | tig0015859:3977-3996 | None:intergenic | 40.0% |
| ! | CGGTGAAGAAACTATTTTCG+GGG | + | tig0015859:3978-3997 | None:intergenic | 40.0% |
| ! | CCGGTGAAGAAACTATTTTC+GGG | + | tig0015859:3979-3998 | None:intergenic | 40.0% |
| CCCGAAAATAGTTTCTTCAC+CGG | - | tig0015859:3976-3995 | Msa1356700:intron | 40.0% | |
| TCTTCACCGGACAAATAAGA+AGG | - | tig0015859:3989-4008 | Msa1356700:intron | 40.0% | |
| CTTCACCGGACAAATAAGAA+GGG | - | tig0015859:3990-4009 | Msa1356700:intron | 40.0% | |
| ! | CAAAGTAGGGCGTTACAATT+TGG | - | tig0015859:4299-4318 | Msa1356700:CDS | 40.0% |
| ATGCTCCAACATTACCTGAA+AGG | - | tig0015859:4426-4445 | Msa1356700:intron | 40.0% | |
| TGCTCCAACATTACCTGAAA+GGG | - | tig0015859:4427-4446 | Msa1356700:intron | 40.0% | |
| ! | ATACCCCTTTCAGGTAATGT+TGG | + | tig0015859:4434-4453 | None:intergenic | 40.0% |
| AGTTCAGATATACCCCTTTC+AGG | + | tig0015859:4443-4462 | None:intergenic | 40.0% | |
| ATCATCATGAAGACGAGTTC+TGG | - | tig0015859:4813-4832 | Msa1356700:CDS | 40.0% | |
| TCATCATGAAGACGAGTTCT+GGG | - | tig0015859:4814-4833 | Msa1356700:CDS | 40.0% | |
| TGGGTCTCGTTTGAAAACTG+AGG | - | tig0015859:3798-3817 | Msa1356700:CDS | 45.0% | |
| TGGACTCCCCAAATTTCCAA+TGG | - | tig0015859:3938-3957 | Msa1356700:intron | 45.0% | |
| ATATGGTAAGCCACGGTGTT+AGG | + | tig0015859:4049-4068 | None:intergenic | 45.0% | |
| ATCAGAACATGGCAACACCT+GGG | - | tig0015859:4253-4272 | Msa1356700:CDS | 45.0% | |
| GATATAGAGCCAAGAGAAGC+CGG | - | tig0015859:4346-4365 | Msa1356700:intron | 45.0% | |
| GCTCCAACATTACCTGAAAG+GGG | - | tig0015859:4428-4447 | Msa1356700:intron | 45.0% | |
| TTTCGGCATGCATACTGTTG+TGG | + | tig0015859:4695-4714 | None:intergenic | 45.0% | |
| ! | GATTGTCGGCTAGTGTCTTT+CGG | + | tig0015859:4712-4731 | None:intergenic | 45.0% |
| ACGTATGCGTGTTCGATTGT+CGG | + | tig0015859:4726-4745 | None:intergenic | 45.0% | |
| !!! | CACAGGTTTTGGAATCTCGT+TGG | + | tig0015859:4774-4793 | None:intergenic | 45.0% |
| TGGGTCTCGTTTGAAAACTG+AGG | - | tig0015859:3798-3817 | Msa1356700:CDS | 45.0% | |
| TGGACTCCCCAAATTTCCAA+TGG | - | tig0015859:3938-3957 | Msa1356700:intron | 45.0% | |
| ATATGGTAAGCCACGGTGTT+AGG | + | tig0015859:4049-4068 | None:intergenic | 45.0% | |
| ATCAGAACATGGCAACACCT+GGG | - | tig0015859:4253-4272 | Msa1356700:CDS | 45.0% | |
| GATATAGAGCCAAGAGAAGC+CGG | - | tig0015859:4346-4365 | Msa1356700:intron | 45.0% | |
| GCTCCAACATTACCTGAAAG+GGG | - | tig0015859:4428-4447 | Msa1356700:intron | 45.0% | |
| TTTCGGCATGCATACTGTTG+TGG | + | tig0015859:4695-4714 | None:intergenic | 45.0% | |
| ! | GATTGTCGGCTAGTGTCTTT+CGG | + | tig0015859:4712-4731 | None:intergenic | 45.0% |
| ACGTATGCGTGTTCGATTGT+CGG | + | tig0015859:4726-4745 | None:intergenic | 45.0% | |
| !!! | CACAGGTTTTGGAATCTCGT+TGG | + | tig0015859:4774-4793 | None:intergenic | 45.0% |
| TCTTCTCCAACCAGTGAGCT+TGG | - | tig0015859:3757-3776 | Msa1356700:CDS | 50.0% | |
| GGGAGTCCATCTGTGTGTTA+TGG | + | tig0015859:3927-3946 | None:intergenic | 50.0% | |
| GGGAGCTCAATTCATGCCAT+TGG | + | tig0015859:3957-3976 | None:intergenic | 50.0% | |
| ! | GCACGCCCTTCTTATTTGTC+CGG | + | tig0015859:3998-4017 | None:intergenic | 50.0% |
| GATCAGAACATGGCAACACC+TGG | - | tig0015859:4252-4271 | Msa1356700:CDS | 50.0% | |
| ! | ACTTCATCCGTTTGAGACCC+AGG | + | tig0015859:4273-4292 | None:intergenic | 50.0% |
| GACAATCGAACACGCATACG+TGG | - | tig0015859:4725-4744 | Msa1356700:CDS | 50.0% | |
| TCTTCTCCAACCAGTGAGCT+TGG | - | tig0015859:3757-3776 | Msa1356700:CDS | 50.0% | |
| GGGAGTCCATCTGTGTGTTA+TGG | + | tig0015859:3927-3946 | None:intergenic | 50.0% | |
| GGGAGCTCAATTCATGCCAT+TGG | + | tig0015859:3957-3976 | None:intergenic | 50.0% | |
| ! | GCACGCCCTTCTTATTTGTC+CGG | + | tig0015859:3998-4017 | None:intergenic | 50.0% |
| GATCAGAACATGGCAACACC+TGG | - | tig0015859:4252-4271 | Msa1356700:CDS | 50.0% | |
| ! | ACTTCATCCGTTTGAGACCC+AGG | + | tig0015859:4273-4292 | None:intergenic | 50.0% |
| GACAATCGAACACGCATACG+TGG | - | tig0015859:4725-4744 | Msa1356700:CDS | 50.0% | |
| ! | ATAAGAAGGGCGTGCAGTGC+AGG | - | tig0015859:4003-4022 | Msa1356700:intron | 55.0% |
| GTGCAGTGCAGGAGATTTGC+AGG | - | tig0015859:4014-4033 | Msa1356700:intron | 55.0% | |
| GGCAACACCTGGGTCTCAAA+CGG | - | tig0015859:4263-4282 | Msa1356700:CDS | 55.0% | |
| ATAGAGCCAAGAGAAGCCGG+AGG | - | tig0015859:4349-4368 | Msa1356700:intron | 55.0% | |
| GAACTTCCTCCGGCTTCTCT+TGG | + | tig0015859:4358-4377 | None:intergenic | 55.0% | |
| ! | ATAAGAAGGGCGTGCAGTGC+AGG | - | tig0015859:4003-4022 | Msa1356700:intron | 55.0% |
| GTGCAGTGCAGGAGATTTGC+AGG | - | tig0015859:4014-4033 | Msa1356700:intron | 55.0% | |
| GGCAACACCTGGGTCTCAAA+CGG | - | tig0015859:4263-4282 | Msa1356700:CDS | 55.0% | |
| ATAGAGCCAAGAGAAGCCGG+AGG | - | tig0015859:4349-4368 | Msa1356700:intron | 55.0% | |
| GAACTTCCTCCGGCTTCTCT+TGG | + | tig0015859:4358-4377 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0015859 | gene | 3592 | 4999 | 3592 | ID=Msa1356700;Name=Msa1356700 |
| tig0015859 | mRNA | 3592 | 4999 | 3592 | ID=Msa1356700-mRNA-1;Parent=Msa1356700;Name=Msa1356700-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|0|0|1|1|1|4|0|251 |
| tig0015859 | exon | 4556 | 4999 | 4556 | ID=Msa1356700-mRNA-1:exon:10113;Parent=Msa1356700-mRNA-1 |
| tig0015859 | exon | 4199 | 4333 | 4199 | ID=Msa1356700-mRNA-1:exon:10112;Parent=Msa1356700-mRNA-1 |
| tig0015859 | exon | 3756 | 3890 | 3756 | ID=Msa1356700-mRNA-1:exon:10111;Parent=Msa1356700-mRNA-1 |
| tig0015859 | exon | 3592 | 3633 | 3592 | ID=Msa1356700-mRNA-1:exon:10110;Parent=Msa1356700-mRNA-1 |
| tig0015859 | CDS | 4556 | 4999 | 4556 | ID=Msa1356700-mRNA-1:cds;Parent=Msa1356700-mRNA-1 |
| tig0015859 | CDS | 4199 | 4333 | 4199 | ID=Msa1356700-mRNA-1:cds;Parent=Msa1356700-mRNA-1 |
| tig0015859 | CDS | 3756 | 3890 | 3756 | ID=Msa1356700-mRNA-1:cds;Parent=Msa1356700-mRNA-1 |
| tig0015859 | CDS | 3592 | 3633 | 3592 | ID=Msa1356700-mRNA-1:cds;Parent=Msa1356700-mRNA-1 |
| Gene Sequence |
| Protein sequence |
