Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0753110 | A0A072UCU8 | 87.714 | 643 | 56 | 3 | 1 | 642 | 1 | 621 | 0.0 | 1039 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0753110 | Msa0828670 | 0.810982 | 8.791709e-51 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0753110 | MtrunA17_Chr5g0397401 | 87.714 | 643 | 56 | 3 | 1 | 642 | 1 | 621 | 0.0 | 1039 |
Msa0753110 | MtrunA17_Chr8g0386851 | 50.870 | 747 | 244 | 20 | 1 | 642 | 1 | 729 | 0.0 | 576 |
Msa0753110 | MtrunA17_Chr4g0032351 | 30.081 | 369 | 197 | 15 | 292 | 641 | 549 | 875 | 1.01e-26 | 116 |
Msa0753110 | MtrunA17_Chr7g0240931 | 29.966 | 297 | 167 | 11 | 292 | 572 | 530 | 801 | 1.10e-26 | 115 |
Msa0753110 | MtrunA17_Chr1g0186181 | 28.947 | 342 | 175 | 11 | 289 | 573 | 264 | 594 | 5.74e-26 | 112 |
Msa0753110 | MtrunA17_Chr2g0328721 | 31.803 | 305 | 158 | 13 | 292 | 581 | 608 | 877 | 4.81e-25 | 110 |
Msa0753110 | MtrunA17_Chr4g0008861 | 27.297 | 370 | 222 | 13 | 215 | 572 | 542 | 876 | 8.83e-25 | 110 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0753110 | AT4G11450.1 | 35.841 | 731 | 317 | 24 | 16 | 642 | 12 | 694 | 3.49e-94 | 305 |
Msa0753110 | AT1G63520.1 | 33.075 | 387 | 194 | 11 | 284 | 642 | 179 | 528 | 2.18e-50 | 183 |
Msa0753110 | AT5G59020.1 | 29.570 | 372 | 190 | 15 | 292 | 641 | 458 | 779 | 4.20e-25 | 111 |
Msa0753110 | AT2G29510.1 | 28.689 | 366 | 193 | 15 | 292 | 641 | 525 | 838 | 9.86e-24 | 107 |
Msa0753110 | AT1G04490.9 | 33.168 | 202 | 94 | 8 | 391 | 573 | 210 | 389 | 3.41e-21 | 96.7 |
Msa0753110 | AT1G04490.5 | 33.168 | 202 | 94 | 8 | 391 | 573 | 210 | 389 | 3.41e-21 | 96.7 |
Msa0753110 | AT1G04490.6 | 33.168 | 202 | 94 | 8 | 391 | 573 | 210 | 389 | 3.41e-21 | 96.7 |
Msa0753110 | AT1G04490.3 | 33.168 | 202 | 94 | 8 | 391 | 573 | 210 | 389 | 3.41e-21 | 96.7 |
Msa0753110 | AT1G04490.7 | 33.168 | 202 | 94 | 8 | 391 | 573 | 210 | 389 | 3.41e-21 | 96.7 |
Msa0753110 | AT1G04490.2 | 33.168 | 202 | 94 | 8 | 391 | 573 | 210 | 389 | 3.41e-21 | 96.7 |
Msa0753110 | AT1G04490.1 | 33.168 | 202 | 94 | 8 | 391 | 573 | 210 | 389 | 3.41e-21 | 96.7 |
Msa0753110 | AT1G04490.8 | 33.168 | 202 | 94 | 8 | 391 | 573 | 210 | 389 | 3.41e-21 | 96.7 |
Msa0753110 | AT5G01030.3 | 41.379 | 116 | 59 | 2 | 457 | 572 | 612 | 718 | 6.21e-21 | 98.2 |
Msa0753110 | AT5G01030.1 | 41.379 | 116 | 59 | 2 | 457 | 572 | 612 | 718 | 6.21e-21 | 98.2 |
Msa0753110 | AT5G01030.2 | 41.379 | 116 | 59 | 2 | 457 | 572 | 612 | 718 | 6.21e-21 | 98.2 |
Msa0753110 | AT2G33360.2 | 39.831 | 118 | 65 | 2 | 459 | 576 | 323 | 434 | 1.77e-20 | 95.1 |
Msa0753110 | AT2G33360.1 | 39.831 | 118 | 65 | 2 | 459 | 576 | 478 | 589 | 2.66e-20 | 95.5 |
Msa0753110 | AT2G37930.3 | 34.234 | 111 | 62 | 2 | 461 | 571 | 429 | 528 | 2.49e-14 | 76.6 |
Msa0753110 | AT2G37930.4 | 34.234 | 111 | 62 | 2 | 461 | 571 | 429 | 528 | 2.49e-14 | 76.6 |
Msa0753110 | AT2G37930.1 | 34.234 | 111 | 62 | 2 | 461 | 571 | 401 | 500 | 2.52e-14 | 76.6 |
Msa0753110 | AT1G04490.4 | 32.836 | 134 | 61 | 5 | 391 | 505 | 210 | 333 | 4.75e-12 | 68.6 |
Find 123 sgRNAs with CRISPR-Local
Find 178 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATTACAATATAGACAATATT+TGG | 0.208992 | 5_2:+6813883 | Msa0753100:intron |
GTTATTGATTCTCTTGTAAT+TGG | 0.213853 | 5_2:-6816275 | Msa0753110:CDS |
GAGTAGGTAATGCTTTAAAT+TGG | 0.219018 | 5_2:-6815878 | Msa0753110:CDS |
TGTTGGTAGGACCTGAAATT+TGG | 0.234521 | 5_2:-6814131 | Msa0753110:three_prime_UTR |
CTGATTTGGACTCTGATAAA+TGG | 0.241736 | 5_2:+6816622 | None:intergenic |
GCATTAGAAGATGGAGTAAT+TGG | 0.242621 | 5_2:-6815732 | Msa0753110:CDS |
ATTTGTCAATAGAGAAATTA+AGG | 0.247687 | 5_2:-6816027 | Msa0753110:CDS |
TTCAAAGATTAGAAGTAATA+AGG | 0.259001 | 5_2:-6816297 | Msa0753110:CDS |
GCACTTTATATGTTCAAATA+AGG | 0.264367 | 5_2:+6813985 | Msa0753100:intron |
TTTACCTTAAACTCAAAATA+AGG | 0.270888 | 5_2:+6815936 | None:intergenic |
GAGGTTGCGACTGTGGTGGC+TGG | 0.277543 | 5_2:-6815371 | Msa0753110:CDS |
GAAGAAAATGGCCACAATTC+AGG | 0.288041 | 5_2:-6816600 | Msa0753110:CDS |
GCCCGCCCAATAGGAGAAAA+AGG | 0.312049 | 5_2:+6814262 | Msa0753100:three_prime_UTR |
ATGTTCACTTACCAAATTTC+AGG | 0.315147 | 5_2:+6814120 | Msa0753100:intron |
TCTAGTCTATGAGATCTAAA+TGG | 0.321402 | 5_2:+6816671 | None:intergenic |
AAGGAGAAATCATGTAGAAA+TGG | 0.325403 | 5_2:-6816743 | Msa0753110:CDS |
TTTGGTGTTACAAATTATCT+TGG | 0.330407 | 5_2:+6813901 | Msa0753100:intron |
ACCAACAATTGCATACAATA+TGG | 0.339112 | 5_2:+6814147 | Msa0753100:CDS |
ATGAGATGGAAGAACAGAAT+TGG | 0.341418 | 5_2:+6816787 | None:intergenic |
CATTCACTCCTATTAGAAAA+AGG | 0.353126 | 5_2:-6816157 | Msa0753110:CDS |
CAATCACTTTCTGATGGATA+TGG | 0.355890 | 5_2:+6816206 | None:intergenic |
AAAGGTAGGAGTACTTTCTT+TGG | 0.371277 | 5_2:+6814564 | Msa0753100:three_prime_UTR |
GAGTCCAAATCAGAAGAAAA+TGG | 0.371965 | 5_2:-6816612 | Msa0753110:CDS |
TTTGCAACAAAGGCATGTTC+AGG | 0.382252 | 5_2:+6815909 | None:intergenic |
ACACTTCATGCCCGCCCAAT+AGG | 0.384596 | 5_2:+6814253 | Msa0753100:three_prime_UTR |
TGGAGTAATTGGAAACTATA+TGG | 0.389111 | 5_2:-6815721 | Msa0753110:CDS |
AATATTGTCTATATTGTAAT+GGG | 0.393251 | 5_2:-6813880 | Msa0753110:three_prime_UTR |
CTCATAGCTGACAATATTGA+TGG | 0.400939 | 5_2:+6814052 | Msa0753100:intron |
GGTAGAGGTGCCATGCAAAA+TGG | 0.403175 | 5_2:+6814456 | Msa0753100:three_prime_UTR |
AGTAGGTAATGCTTTAAATT+GGG | 0.403955 | 5_2:-6815877 | Msa0753110:CDS |
GGATGAAATTCACATCAATA+TGG | 0.410646 | 5_2:-6814092 | Msa0753110:three_prime_UTR |
ACTAGTGACAACTCTTGTTC+TGG | 0.422154 | 5_2:-6816548 | Msa0753110:CDS |
AGGAGAAATCATGTAGAAAT+GGG | 0.428589 | 5_2:-6816742 | Msa0753110:CDS |
AAACAATAGCAGCACTTTCA+AGG | 0.433528 | 5_2:+6815592 | None:intergenic |
ATTGTCAGCTATGAGTTATA+AGG | 0.434506 | 5_2:-6814044 | Msa0753110:three_prime_UTR |
TATTGTAATGGGATAATAAG+AGG | 0.438232 | 5_2:-6813869 | Msa0753110:three_prime_UTR |
AAATATTGTCTATATTGTAA+TGG | 0.438286 | 5_2:-6813881 | Msa0753110:three_prime_UTR |
AACGAAGAATAATGCAGGCT+TGG | 0.438605 | 5_2:-6815826 | Msa0753110:CDS |
CGACTGTGGTGGCTGGGACA+TGG | 0.444536 | 5_2:-6815364 | Msa0753110:CDS |
GGCAAACCATGGTTTCCAAT+TGG | 0.448117 | 5_2:+6815447 | Msa0753100:three_prime_UTR |
CTTCAGCGCTAAGGAAGAAC+AGG | 0.449187 | 5_2:-6814434 | Msa0753110:CDS |
GAATTGCCTAAAAGAATAAG+AGG | 0.449551 | 5_2:+6815336 | Msa0753100:three_prime_UTR |
AAAGAAAGTACTCCTACCTT+TGG | 0.451706 | 5_2:-6814562 | Msa0753110:CDS |
ATTATTGATGGGACAAGAGT+TGG | 0.452032 | 5_2:-6816843 | None:intergenic |
ATGCAAAATGGCGACGCAAA+TGG | 0.453647 | 5_2:+6814468 | Msa0753100:three_prime_UTR |
TTGGTGTTACAAATTATCTT+GGG | 0.454142 | 5_2:+6813902 | Msa0753100:intron |
TCGAGTTGCGGCCTTCAATC+AGG | 0.454643 | 5_2:+6814198 | Msa0753100:CDS |
TGAAGAAATATCACTTGGTA+TGG | 0.455014 | 5_2:+6815497 | Msa0753100:three_prime_UTR |
TCCATATTGTATGCAATTGT+TGG | 0.457862 | 5_2:-6814148 | Msa0753110:three_prime_UTR |
GAATGAATAGTCAGCTCTCA+TGG | 0.463256 | 5_2:-6813953 | Msa0753110:three_prime_UTR |
TGAGATGGAAGAACAGAATT+GGG | 0.465267 | 5_2:+6816788 | None:intergenic |
TTATGTTCTGCATTAGAAGA+TGG | 0.466903 | 5_2:-6815741 | Msa0753110:CDS |
AGATTACCATGCAAATGAAC+AGG | 0.469037 | 5_2:+6815984 | None:intergenic |
GTGAAGGTGGTATTACCAAT+TGG | 0.472172 | 5_2:-6815462 | Msa0753110:CDS |
ACGAAGAATAATGCAGGCTT+GGG | 0.479565 | 5_2:-6815825 | Msa0753110:CDS |
CTGTTCTTCCTTAGCGCTGA+AGG | 0.482475 | 5_2:+6814435 | Msa0753100:three_prime_UTR |
TTCCTTAGCGCTGAAGGTAG+AGG | 0.484557 | 5_2:+6814441 | Msa0753100:three_prime_UTR |
ACCTTCTTCAGTAATATCTC+AGG | 0.485628 | 5_2:-6816468 | Msa0753110:CDS |
TTCTTGTTCCTGTGCTTGTG+TGG | 0.488779 | 5_2:-6816414 | Msa0753110:CDS |
TGCTCACCTGTTCATTTGCA+TGG | 0.492446 | 5_2:-6815990 | Msa0753110:CDS |
TCCTGAGATATTACTGAAGA+AGG | 0.493642 | 5_2:+6816467 | None:intergenic |
TGACAAAGATTCATCATCAA+TGG | 0.501640 | 5_2:-6815790 | Msa0753110:CDS |
TTCCAACATAGCCTGATTGA+AGG | 0.507925 | 5_2:-6814209 | Msa0753110:three_prime_UTR |
GGCATGACATTAGTTGAAGA+GGG | 0.515356 | 5_2:-6814541 | Msa0753110:CDS |
ATGCCTTTGTTGCAAAGACA+TGG | 0.516018 | 5_2:-6815902 | Msa0753110:CDS |
AAACTGTTTGAATGCGAAGA+AGG | 0.517043 | 5_2:-6816762 | Msa0753110:CDS |
AGGTTGCGACTGTGGTGGCT+GGG | 0.520329 | 5_2:-6815370 | Msa0753110:CDS |
TTGCAACAAAGGCATGTTCA+GGG | 0.525799 | 5_2:+6815910 | None:intergenic |
GATGAACAATCACTTTCTGA+TGG | 0.526712 | 5_2:+6816200 | None:intergenic |
CAGTCATAACAGAGGAGAAG+AGG | 0.532964 | 5_2:-6814336 | Msa0753110:CDS |
TGTGGAGAAATATCAATCAC+TGG | 0.535638 | 5_2:-6815283 | Msa0753110:CDS |
CACCTCTACCTTCAGCGCTA+AGG | 0.536910 | 5_2:-6814443 | Msa0753110:CDS |
TATTGTATGCAATTGTTGGT+AGG | 0.537280 | 5_2:-6814144 | Msa0753110:three_prime_UTR |
ATACAATATGGACTCATAGC+TGG | 0.537713 | 5_2:+6814159 | Msa0753100:CDS |
CTTCATCGTTACTTGATCGA+TGG | 0.538533 | 5_2:-6815404 | Msa0753110:CDS |
GCCTAAAAGAATAAGAGGGC+AGG | 0.547406 | 5_2:+6815341 | Msa0753100:three_prime_UTR |
ATTGTAATGGGATAATAAGA+GGG | 0.550658 | 5_2:-6813868 | Msa0753110:three_prime_UTR |
TCTAGTGTAGTAGAAGTAGC+AGG | 0.550700 | 5_2:-6816329 | Msa0753110:CDS |
GAAAGCTTGAAATACAAAAG+AGG | 0.552857 | 5_2:-6815546 | Msa0753110:CDS |
ATTAGAACGAAGAATAATGC+AGG | 0.554547 | 5_2:-6815831 | Msa0753110:CDS |
GCTGTGATCCACACAAGCAC+AGG | 0.556818 | 5_2:+6816406 | None:intergenic |
TCATGAAGATAGCCCTCTTG+TGG | 0.557960 | 5_2:-6815301 | Msa0753110:CDS |
TGGCATGACATTAGTTGAAG+AGG | 0.559062 | 5_2:-6814542 | Msa0753110:CDS |
GGCCTTCAATCAGGCTATGT+TGG | 0.563061 | 5_2:+6814207 | Msa0753100:CDS |
CATGGTGGAGGTTGCGACTG+TGG | 0.566215 | 5_2:-6815378 | Msa0753110:CDS |
AAGCTTTCTCTCTTATGAAG+CGG | 0.566415 | 5_2:+6815561 | Msa0753100:three_prime_UTR |
GTATTACCAATTGGAAACCA+TGG | 0.570636 | 5_2:-6815453 | Msa0753110:CDS |
GATTGATATTTCTCCACAAG+AGG | 0.571910 | 5_2:+6815288 | Msa0753100:three_prime_UTR |
GCACAGGAACAAGAAACAGA+TGG | 0.584959 | 5_2:+6816422 | None:intergenic |
AAAAGATAGAAATTTCAAGT+AGG | 0.590011 | 5_2:-6816571 | Msa0753110:CDS |
AAAAGGCGGGTTCAGCATAG+AGG | 0.592188 | 5_2:+6814279 | Msa0753100:three_prime_UTR |
GAGAATATAGAAACTAGAAG+AGG | 0.592815 | 5_2:-6816647 | Msa0753110:CDS |
TTCAACTAATGTCATGCCAA+AGG | 0.596988 | 5_2:+6814546 | Msa0753100:three_prime_UTR |
TTGTGTGGTTCAGATGATGA+AGG | 0.597591 | 5_2:-6816509 | Msa0753110:CDS |
AAATGGCCACAATTCAGGAA+AGG | 0.598724 | 5_2:-6816595 | Msa0753110:CDS |
TTTCAGCACTTGGCAAACCA+TGG | 0.600295 | 5_2:+6815436 | Msa0753100:three_prime_UTR |
CACTTTCTGATGGATATGGT+TGG | 0.600468 | 5_2:+6816210 | None:intergenic |
GTTGCAAAGACATGGAGAGT+AGG | 0.601872 | 5_2:-6815894 | Msa0753110:CDS |
ACTAATGTCATGCCAAAGGT+AGG | 0.602147 | 5_2:+6814550 | Msa0753100:three_prime_UTR |
CATCGATCAAGTAACGATGA+AGG | 0.603033 | 5_2:+6815405 | Msa0753100:three_prime_UTR |
AGATGATGAAGGTTCTGTTG+AGG | 0.604425 | 5_2:-6816498 | Msa0753110:CDS |
GTCTATGAGATCTAAATGGA+AGG | 0.606001 | 5_2:+6816675 | None:intergenic |
TTACTTGATCGATGGAAACA+TGG | 0.608456 | 5_2:-6815396 | Msa0753110:CDS |
TCTCCATGTCTTTGCAACAA+AGG | 0.610158 | 5_2:+6815899 | None:intergenic |
TGCAACAAAGGCATGTTCAG+GGG | 0.610690 | 5_2:+6815911 | None:intergenic |
TCATAGCTGACAATATTGAT+GGG | 0.611374 | 5_2:+6814053 | Msa0753100:intron |
TTCACTAGTAGAGCAAGTGA+AGG | 0.612894 | 5_2:-6815478 | Msa0753110:CDS |
ATTGATATTTCTCCACAAGA+GGG | 0.615796 | 5_2:+6815289 | Msa0753100:three_prime_UTR |
TTTGCCAAGTGCTGAAAGCG+AGG | 0.618483 | 5_2:-6815430 | Msa0753110:CDS |
TGAAATTTGGTAAGTGAACA+TGG | 0.619849 | 5_2:-6814118 | Msa0753110:three_prime_UTR |
ACTAGTAGAGCAAGTGAAGG+TGG | 0.627677 | 5_2:-6815475 | Msa0753110:CDS |
GCATGACATTAGTTGAAGAG+GGG | 0.628529 | 5_2:-6814540 | Msa0753110:CDS |
AATTGCCTAAAAGAATAAGA+GGG | 0.636194 | 5_2:+6815337 | Msa0753100:three_prime_UTR |
ACTAGTGAAGAAATATCACT+TGG | 0.637185 | 5_2:+6815492 | Msa0753100:three_prime_UTR |
GACAGTGTCTAATATTCACA+AGG | 0.640826 | 5_2:-6814314 | Msa0753110:CDS |
TTGCCAAGTGCTGAAAGCGA+GGG | 0.650835 | 5_2:-6815429 | Msa0753110:CDS |
TTTGGTAAGTGAACATGGTG+AGG | 0.652629 | 5_2:-6814113 | Msa0753110:three_prime_UTR |
TAGAAATGGGAAATTCAATG+AGG | 0.676384 | 5_2:-6816729 | Msa0753110:CDS |
GGTGGAGGTTGCGACTGTGG+TGG | 0.681780 | 5_2:-6815375 | Msa0753110:CDS |
GATCGATGGAAACATGGTGG+AGG | 0.686983 | 5_2:-6815390 | Msa0753110:CDS |
CTTGATCGATGGAAACATGG+TGG | 0.691146 | 5_2:-6815393 | Msa0753110:CDS |
CATCAAATCAGTCATAACAG+AGG | 0.691271 | 5_2:-6814344 | Msa0753110:CDS |
ACAGTGTCTAATATTCACAA+GGG | 0.748410 | 5_2:-6814313 | Msa0753110:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | ACTTACATTTTATCTATTTT+TGG | - | chr5_2:6816093-6816112 | Msa0753110:CDS | 15.0% |
!! | ATTACAATATAGACAATATT+TGG | + | chr5_2:6816811-6816830 | None:intergenic | 15.0% |
!! | AAATATTGTCTATATTGTAA+TGG | - | chr5_2:6816810-6816829 | Msa0753110:CDS | 15.0% |
!! | AATATTGTCTATATTGTAAT+GGG | - | chr5_2:6816811-6816830 | Msa0753110:CDS | 15.0% |
!!! | AAAAGATAGAAATTTCAAGT+AGG | - | chr5_2:6814120-6814139 | Msa0753110:three_prime_UTR | 20.0% |
!! | TTCAAAGATTAGAAGTAATA+AGG | - | chr5_2:6814394-6814413 | Msa0753110:CDS | 20.0% |
!! | ATTTGTCAATAGAGAAATTA+AGG | - | chr5_2:6814664-6814683 | Msa0753110:intron | 20.0% |
!! | TTTACCTTAAACTCAAAATA+AGG | + | chr5_2:6814758-6814777 | Msa0753100:intron | 20.0% |
!!! | TGCAATTGTTTTATAAAATG+TGG | + | chr5_2:6815765-6815784 | None:intergenic | 20.0% |
!!! | TTTTGTTGAATACAAATAAC+AGG | + | chr5_2:6815859-6815878 | None:intergenic | 20.0% |
!! | GTACTATAAAAAACAATAAG+AGG | + | chr5_2:6816075-6816094 | None:intergenic | 20.0% |
!!! | GTTATTGATTCTCTTGTAAT+TGG | - | chr5_2:6814416-6814435 | Msa0753110:CDS | 25.0% |
!!! | ACTTTTTTTGACTTTGTGAA+AGG | + | chr5_2:6814566-6814585 | Msa0753100:three_prime_UTR | 25.0% |
! | AAAAAAAGTTGCAAGAAACA+TGG | - | chr5_2:6814577-6814596 | Msa0753110:intron | 25.0% |
! | TGTCAAAAATCTTTGTTGAA+TGG | - | chr5_2:6814602-6814621 | Msa0753110:intron | 25.0% |
!!! | ACATCCTTATTTTGAGTTTA+AGG | - | chr5_2:6814751-6814770 | Msa0753110:intron | 25.0% |
!! | AGTAGGTAATGCTTTAAATT+GGG | - | chr5_2:6814814-6814833 | Msa0753110:intron | 25.0% |
! | AATTGCCTAAAAGAATAAGA+GGG | + | chr5_2:6815357-6815376 | Msa0753100:three_prime_UTR | 25.0% |
! | TGAAATTTAATCTTTACCTG+AGG | + | chr5_2:6815448-6815467 | Msa0753100:three_prime_UTR | 25.0% |
! | TCATATAAAGTCTTTCTTGA+AGG | - | chr5_2:6815465-6815484 | Msa0753110:CDS | 25.0% |
! | TTCTTATTAAATTCGAGAAC+TGG | + | chr5_2:6815513-6815532 | Msa0753100:three_prime_UTR | 25.0% |
! | ATTATGACGATTTAATCGAT+TGG | + | chr5_2:6815707-6815726 | None:intergenic | 25.0% |
! | TCATAGAATGCATATACAAT+CGG | - | chr5_2:6815906-6815925 | Msa0753110:CDS | 25.0% |
!! | AAAAAGTTAGTTAGCCTAAT+TGG | - | chr5_2:6815939-6815958 | Msa0753110:CDS | 25.0% |
!!! | TACAACAATGTGTTTTTGAT+TGG | - | chr5_2:6816000-6816019 | Msa0753110:CDS | 25.0% |
!! | GTAATGAAGATAATTTTGCA+TGG | + | chr5_2:6816194-6816213 | None:intergenic | 25.0% |
! | GCACTTTATATGTTCAAATA+AGG | + | chr5_2:6816709-6816728 | None:intergenic | 25.0% |
!!! | TTGGTGTTACAAATTATCTT+GGG | + | chr5_2:6816792-6816811 | None:intergenic | 25.0% |
!!! | TTTGGTGTTACAAATTATCT+TGG | + | chr5_2:6816793-6816812 | None:intergenic | 25.0% |
!! | TATTGTAATGGGATAATAAG+AGG | - | chr5_2:6816822-6816841 | Msa0753110:CDS | 25.0% |
!! | ATTGTAATGGGATAATAAGA+GGG | - | chr5_2:6816823-6816842 | Msa0753110:CDS | 25.0% |
!! | TTCAAACAGTTTTGATGAGA+TGG | + | chr5_2:6813921-6813940 | Msa0753100:intron | 30.0% |
AAGGAGAAATCATGTAGAAA+TGG | - | chr5_2:6813948-6813967 | Msa0753110:three_prime_UTR | 30.0% | |
AGGAGAAATCATGTAGAAAT+GGG | - | chr5_2:6813949-6813968 | Msa0753110:three_prime_UTR | 30.0% | |
TAGAAATGGGAAATTCAATG+AGG | - | chr5_2:6813962-6813981 | Msa0753110:three_prime_UTR | 30.0% | |
TCTAGTCTATGAGATCTAAA+TGG | + | chr5_2:6814023-6814042 | Msa0753100:intron | 30.0% | |
GAGAATATAGAAACTAGAAG+AGG | - | chr5_2:6814044-6814063 | Msa0753110:three_prime_UTR | 30.0% | |
!!! | AGCATTTTTTATGCATTGTG+TGG | - | chr5_2:6814167-6814186 | Msa0753110:three_prime_UTR | 30.0% |
TAATTCTCCTCTTCAAAAAG+TGG | - | chr5_2:6814442-6814461 | Msa0753110:CDS | 30.0% | |
CATTCACTCCTATTAGAAAA+AGG | - | chr5_2:6814534-6814553 | Msa0753110:CDS | 30.0% | |
!! | GGATTTAGCCTTTTTCTAAT+AGG | + | chr5_2:6814545-6814564 | Msa0753100:three_prime_UTR | 30.0% |
!! | CTCAAGTTGAAAAACAAACA+AGG | - | chr5_2:6814728-6814747 | Msa0753110:intron | 30.0% |
! | GAGTAGGTAATGCTTTAAAT+TGG | - | chr5_2:6814813-6814832 | Msa0753110:intron | 30.0% |
ATTAGAACGAAGAATAATGC+AGG | - | chr5_2:6814860-6814879 | Msa0753110:intron | 30.0% | |
TGACAAAGATTCATCATCAA+TGG | - | chr5_2:6814901-6814920 | Msa0753110:intron | 30.0% | |
TTATGTTCTGCATTAGAAGA+TGG | - | chr5_2:6814950-6814969 | Msa0753110:intron | 30.0% | |
TGGAGTAATTGGAAACTATA+TGG | - | chr5_2:6814970-6814989 | Msa0753110:intron | 30.0% | |
GAAAGCTTGAAATACAAAAG+AGG | - | chr5_2:6815145-6815164 | Msa0753110:intron | 30.0% | |
TGAAGAAATATCACTTGGTA+TGG | + | chr5_2:6815197-6815216 | Msa0753100:intron | 30.0% | |
ACTAGTGAAGAAATATCACT+TGG | + | chr5_2:6815202-6815221 | Msa0753100:intron | 30.0% | |
GAATTGCCTAAAAGAATAAG+AGG | + | chr5_2:6815358-6815377 | Msa0753100:three_prime_UTR | 30.0% | |
ATTGATATTTCTCCACAAGA+GGG | + | chr5_2:6815405-6815424 | Msa0753100:three_prime_UTR | 30.0% | |
ATCGTGAAAAAATCAGTACA+GGG | + | chr5_2:6815653-6815672 | None:intergenic | 30.0% | |
AATCGTGAAAAAATCAGTAC+AGG | + | chr5_2:6815654-6815673 | None:intergenic | 30.0% | |
! | TCACGATTTAAAAGCATGTT+TGG | - | chr5_2:6815666-6815685 | Msa0753110:CDS | 30.0% |
TATCATCATATGAGAAGAGA+AGG | + | chr5_2:6815742-6815761 | None:intergenic | 30.0% | |
GAACATTCTTCAAACTAACT+AGG | - | chr5_2:6815824-6815843 | Msa0753110:CDS | 30.0% | |
!!! | TTTATCTATTTTTGGTGCAC+AGG | - | chr5_2:6816101-6816120 | Msa0753110:CDS | 30.0% |
!!! | TTATCTATTTTTGGTGCACA+GGG | - | chr5_2:6816102-6816121 | Msa0753110:CDS | 30.0% |
ACAGTGTCTAATATTCACAA+GGG | - | chr5_2:6816378-6816397 | Msa0753110:CDS | 30.0% | |
TCCATATTGTATGCAATTGT+TGG | - | chr5_2:6816543-6816562 | Msa0753110:CDS | 30.0% | |
ACCAACAATTGCATACAATA+TGG | + | chr5_2:6816547-6816566 | None:intergenic | 30.0% | |
TATTGTATGCAATTGTTGGT+AGG | - | chr5_2:6816547-6816566 | Msa0753110:CDS | 30.0% | |
ATGTTCACTTACCAAATTTC+AGG | + | chr5_2:6816574-6816593 | None:intergenic | 30.0% | |
TGAAATTTGGTAAGTGAACA+TGG | - | chr5_2:6816573-6816592 | Msa0753110:CDS | 30.0% | |
GGATGAAATTCACATCAATA+TGG | - | chr5_2:6816599-6816618 | Msa0753110:CDS | 30.0% | |
TCATAGCTGACAATATTGAT+GGG | + | chr5_2:6816641-6816660 | None:intergenic | 30.0% | |
ATTGTCAGCTATGAGTTATA+AGG | - | chr5_2:6816647-6816666 | Msa0753110:CDS | 30.0% | |
TGAGATGGAAGAACAGAATT+GGG | + | chr5_2:6813906-6813925 | Msa0753100:intron | 35.0% | |
ATGAGATGGAAGAACAGAAT+TGG | + | chr5_2:6813907-6813926 | Msa0753100:intron | 35.0% | |
AAACTGTTTGAATGCGAAGA+AGG | - | chr5_2:6813929-6813948 | Msa0753110:three_prime_UTR | 35.0% | |
GTCTATGAGATCTAAATGGA+AGG | + | chr5_2:6814019-6814038 | Msa0753100:intron | 35.0% | |
!! | CTGATTTGGACTCTGATAAA+TGG | + | chr5_2:6814072-6814091 | Msa0753100:intron | 35.0% |
GAGTCCAAATCAGAAGAAAA+TGG | - | chr5_2:6814079-6814098 | Msa0753110:three_prime_UTR | 35.0% | |
! | CTTTTTCCTTTCCTGAATTG+TGG | + | chr5_2:6814105-6814124 | Msa0753100:intron | 35.0% |
ACCTTCTTCAGTAATATCTC+AGG | - | chr5_2:6814223-6814242 | Msa0753110:three_prime_UTR | 35.0% | |
TCCTGAGATATTACTGAAGA+AGG | + | chr5_2:6814227-6814246 | Msa0753100:exon | 35.0% | |
!!! | GAGATTTCCACTTTTTGAAG+AGG | + | chr5_2:6814452-6814471 | Msa0753100:three_prime_UTR | 35.0% |
! | CAATCACTTTCTGATGGATA+TGG | + | chr5_2:6814488-6814507 | Msa0753100:three_prime_UTR | 35.0% |
GATGAACAATCACTTTCTGA+TGG | + | chr5_2:6814494-6814513 | Msa0753100:three_prime_UTR | 35.0% | |
AGATTACCATGCAAATGAAC+AGG | + | chr5_2:6814710-6814729 | Msa0753100:intron | 35.0% | |
GCATTAGAAGATGGAGTAAT+TGG | - | chr5_2:6814959-6814978 | Msa0753110:intron | 35.0% | |
!! | TGGCTGTAAGACTTTTTCTT+TGG | + | chr5_2:6815046-6815065 | Msa0753100:intron | 35.0% |
AAACAATAGCAGCACTTTCA+AGG | + | chr5_2:6815102-6815121 | Msa0753100:intron | 35.0% | |
AAGCTTTCTCTCTTATGAAG+CGG | + | chr5_2:6815133-6815152 | Msa0753100:intron | 35.0% | |
GTATTACCAATTGGAAACCA+TGG | - | chr5_2:6815238-6815257 | Msa0753110:intron | 35.0% | |
TTACTTGATCGATGGAAACA+TGG | - | chr5_2:6815295-6815314 | Msa0753110:CDS | 35.0% | |
GATTGATATTTCTCCACAAG+AGG | + | chr5_2:6815406-6815425 | Msa0753100:three_prime_UTR | 35.0% | |
TGTGGAGAAATATCAATCAC+TGG | - | chr5_2:6815408-6815427 | Msa0753110:CDS | 35.0% | |
CTTTCTTGAAGGAACTTAGA+TGG | - | chr5_2:6815476-6815495 | Msa0753110:CDS | 35.0% | |
TATTCTTAAATGCGCGTTCA+TGG | + | chr5_2:6815612-6815631 | None:intergenic | 35.0% | |
GAAGAATGTTCTAACTACTG+CGG | + | chr5_2:6815815-6815834 | None:intergenic | 35.0% | |
!! | AAAGGTAGGAGTACTTTCTT+TGG | + | chr5_2:6816130-6816149 | None:intergenic | 35.0% |
!! | AAAGAAAGTACTCCTACCTT+TGG | - | chr5_2:6816129-6816148 | Msa0753110:CDS | 35.0% |
TTCAACTAATGTCATGCCAA+AGG | + | chr5_2:6816148-6816167 | None:intergenic | 35.0% | |
CATCAAATCAGTCATAACAG+AGG | - | chr5_2:6816347-6816366 | Msa0753110:CDS | 35.0% | |
GACAGTGTCTAATATTCACA+AGG | - | chr5_2:6816377-6816396 | Msa0753110:CDS | 35.0% | |
!! | AAATATTTTCGCTCGAGTTG+CGG | + | chr5_2:6816508-6816527 | None:intergenic | 35.0% |
ATACAATATGGACTCATAGC+TGG | + | chr5_2:6816535-6816554 | None:intergenic | 35.0% | |
CTCATAGCTGACAATATTGA+TGG | + | chr5_2:6816642-6816661 | None:intergenic | 35.0% | |
! | TGGAAAAAATGTGGAGTATC+TGG | - | chr5_2:6816758-6816777 | Msa0753110:CDS | 35.0% |
!! | GTGGCCATTTTCTTCTGATT+TGG | + | chr5_2:6814086-6814105 | Msa0753100:intron | 40.0% |
GAAGAAAATGGCCACAATTC+AGG | - | chr5_2:6814091-6814110 | Msa0753110:three_prime_UTR | 40.0% | |
AAATGGCCACAATTCAGGAA+AGG | - | chr5_2:6814096-6814115 | Msa0753110:three_prime_UTR | 40.0% | |
ACTAGTGACAACTCTTGTTC+TGG | - | chr5_2:6814143-6814162 | Msa0753110:three_prime_UTR | 40.0% | |
TTGTGTGGTTCAGATGATGA+AGG | - | chr5_2:6814182-6814201 | Msa0753110:three_prime_UTR | 40.0% | |
AGATGATGAAGGTTCTGTTG+AGG | - | chr5_2:6814193-6814212 | Msa0753110:three_prime_UTR | 40.0% | |
TCTAGTGTAGTAGAAGTAGC+AGG | - | chr5_2:6814362-6814381 | Msa0753110:CDS | 40.0% | |
! | CACTTTCTGATGGATATGGT+TGG | + | chr5_2:6814484-6814503 | Msa0753100:three_prime_UTR | 40.0% |
!! | GTCAGCATCTTTTGTTGTGT+TGG | + | chr5_2:6814633-6814652 | Msa0753100:intron | 40.0% |
! | TTGCAACAAAGGCATGTTCA+GGG | + | chr5_2:6814784-6814803 | Msa0753100:intron | 40.0% |
! | TTTGCAACAAAGGCATGTTC+AGG | + | chr5_2:6814785-6814804 | Msa0753100:intron | 40.0% |
ATGCCTTTGTTGCAAAGACA+TGG | - | chr5_2:6814789-6814808 | Msa0753110:intron | 40.0% | |
TCTCCATGTCTTTGCAACAA+AGG | + | chr5_2:6814795-6814814 | Msa0753100:intron | 40.0% | |
AACGAAGAATAATGCAGGCT+TGG | - | chr5_2:6814865-6814884 | Msa0753110:intron | 40.0% | |
ACGAAGAATAATGCAGGCTT+GGG | - | chr5_2:6814866-6814885 | Msa0753110:intron | 40.0% | |
!! | GAGTTTTCGAAGCATCTTGT+TGG | + | chr5_2:6815066-6815085 | Msa0753100:intron | 40.0% |
TTCACTAGTAGAGCAAGTGA+AGG | - | chr5_2:6815213-6815232 | Msa0753110:intron | 40.0% | |
GTGAAGGTGGTATTACCAAT+TGG | - | chr5_2:6815229-6815248 | Msa0753110:intron | 40.0% | |
CATCGATCAAGTAACGATGA+AGG | + | chr5_2:6815289-6815308 | Msa0753100:three_prime_UTR | 40.0% | |
CTTCATCGTTACTTGATCGA+TGG | - | chr5_2:6815287-6815306 | Msa0753110:CDS | 40.0% | |
CAATCCTATAGTATGTACGC+AGG | + | chr5_2:6815975-6815994 | None:intergenic | 40.0% | |
ACTAATGTCATGCCAAAGGT+AGG | + | chr5_2:6816144-6816163 | None:intergenic | 40.0% | |
TGGCATGACATTAGTTGAAG+AGG | - | chr5_2:6816149-6816168 | Msa0753110:CDS | 40.0% | |
GGCATGACATTAGTTGAAGA+GGG | - | chr5_2:6816150-6816169 | Msa0753110:CDS | 40.0% | |
GCATGACATTAGTTGAAGAG+GGG | - | chr5_2:6816151-6816170 | Msa0753110:CDS | 40.0% | |
TTCCAACATAGCCTGATTGA+AGG | - | chr5_2:6816482-6816501 | Msa0753110:CDS | 40.0% | |
! | TGTTGGTAGGACCTGAAATT+TGG | - | chr5_2:6816560-6816579 | Msa0753110:CDS | 40.0% |
TTTGGTAAGTGAACATGGTG+AGG | - | chr5_2:6816578-6816597 | Msa0753110:CDS | 40.0% | |
GAATGAATAGTCAGCTCTCA+TGG | - | chr5_2:6816738-6816757 | Msa0753110:CDS | 40.0% | |
CAGCTCTCATGGAAAAAATG+TGG | - | chr5_2:6816749-6816768 | Msa0753110:CDS | 40.0% | |
GCACAGGAACAAGAAACAGA+TGG | + | chr5_2:6814272-6814291 | Msa0753100:three_prime_UTR | 45.0% | |
TTCTTGTTCCTGTGCTTGTG+TGG | - | chr5_2:6814277-6814296 | Msa0753110:CDS | 45.0% | |
TGCTCACCTGTTCATTTGCA+TGG | - | chr5_2:6814701-6814720 | Msa0753110:intron | 45.0% | |
! | TGCAACAAAGGCATGTTCAG+GGG | + | chr5_2:6814783-6814802 | Msa0753100:intron | 45.0% |
GTTGCAAAGACATGGAGAGT+AGG | - | chr5_2:6814797-6814816 | Msa0753110:intron | 45.0% | |
ACTAGTAGAGCAAGTGAAGG+TGG | - | chr5_2:6815216-6815235 | Msa0753110:intron | 45.0% | |
GGCAAACCATGGTTTCCAAT+TGG | + | chr5_2:6815247-6815266 | Msa0753100:intron | 45.0% | |
TTTCAGCACTTGGCAAACCA+TGG | + | chr5_2:6815258-6815277 | Msa0753100:intron | 45.0% | |
CTTGATCGATGGAAACATGG+TGG | - | chr5_2:6815298-6815317 | Msa0753110:CDS | 45.0% | |
! | GCCTGCCCTCTTATTCTTTT+AGG | - | chr5_2:6815349-6815368 | Msa0753110:CDS | 45.0% |
GCCTAAAAGAATAAGAGGGC+AGG | + | chr5_2:6815353-6815372 | Msa0753100:three_prime_UTR | 45.0% | |
TCATGAAGATAGCCCTCTTG+TGG | - | chr5_2:6815390-6815409 | Msa0753110:CDS | 45.0% | |
GCGCGTTCATGGTATTTGAT+AGG | + | chr5_2:6815601-6815620 | None:intergenic | 45.0% | |
! | ATCCAGTCAGCGCTGAATTA+TGG | - | chr5_2:6815787-6815806 | Msa0753110:CDS | 45.0% |
!! | TTCCATAATTCAGCGCTGAC+TGG | + | chr5_2:6815792-6815811 | None:intergenic | 45.0% |
!! | CAGGAGCTTGTTGTCCAATT+AGG | + | chr5_2:6815956-6815975 | None:intergenic | 45.0% |
AGCTCCTGCGTACATACTAT+AGG | - | chr5_2:6815968-6815987 | Msa0753110:CDS | 45.0% | |
ATGCAAAATGGCGACGCAAA+TGG | + | chr5_2:6816226-6816245 | None:intergenic | 45.0% | |
!! | ATTTGCGTCGCCATTTTGCA+TGG | - | chr5_2:6816225-6816244 | Msa0753110:CDS | 45.0% |
CAGTCATAACAGAGGAGAAG+AGG | - | chr5_2:6816355-6816374 | Msa0753110:CDS | 45.0% | |
! | AACCCGCCTTTTTCTCCTAT+TGG | - | chr5_2:6816423-6816442 | Msa0753110:CDS | 45.0% |
! | ACCCGCCTTTTTCTCCTATT+GGG | - | chr5_2:6816424-6816443 | Msa0753110:CDS | 45.0% |
!! | TTTGCCAAGTGCTGAAAGCG+AGG | - | chr5_2:6815261-6815280 | Msa0753110:intron | 50.0% |
!! | TTGCCAAGTGCTGAAAGCGA+GGG | - | chr5_2:6815262-6815281 | Msa0753110:intron | 50.0% |
GATCGATGGAAACATGGTGG+AGG | - | chr5_2:6815301-6815320 | Msa0753110:CDS | 50.0% | |
! | GGAACTTTTCTCTCAGCCTC+AGG | - | chr5_2:6815429-6815448 | Msa0753110:CDS | 50.0% |
!! | GGTAGAGGTGCCATGCAAAA+TGG | + | chr5_2:6816238-6816257 | None:intergenic | 50.0% |
! | TTCCTTAGCGCTGAAGGTAG+AGG | + | chr5_2:6816253-6816272 | None:intergenic | 50.0% |
! | CTGTTCTTCCTTAGCGCTGA+AGG | + | chr5_2:6816259-6816278 | None:intergenic | 50.0% |
CTTCAGCGCTAAGGAAGAAC+AGG | - | chr5_2:6816257-6816276 | Msa0753110:CDS | 50.0% | |
! | AAAAGGCGGGTTCAGCATAG+AGG | + | chr5_2:6816415-6816434 | None:intergenic | 50.0% |
GCCCAATAGGAGAAAAAGGC+GGG | + | chr5_2:6816428-6816447 | None:intergenic | 50.0% | |
CGCCCAATAGGAGAAAAAGG+CGG | + | chr5_2:6816429-6816448 | None:intergenic | 50.0% | |
! | CGCCTTTTTCTCCTATTGGG+CGG | - | chr5_2:6816427-6816446 | Msa0753110:CDS | 50.0% |
! | GCCTTTTTCTCCTATTGGGC+GGG | - | chr5_2:6816428-6816447 | Msa0753110:CDS | 50.0% |
GGCCTTCAATCAGGCTATGT+TGG | + | chr5_2:6816487-6816506 | None:intergenic | 50.0% | |
GCTGTGATCCACACAAGCAC+AGG | + | chr5_2:6814288-6814307 | Msa0753100:three_prime_UTR | 55.0% | |
CACCTCTACCTTCAGCGCTA+AGG | - | chr5_2:6816248-6816267 | Msa0753110:CDS | 55.0% | |
GCCCGCCCAATAGGAGAAAA+AGG | + | chr5_2:6816432-6816451 | None:intergenic | 55.0% | |
ACACTTCATGCCCGCCCAAT+AGG | + | chr5_2:6816441-6816460 | None:intergenic | 55.0% | |
! | TCGAGTTGCGGCCTTCAATC+AGG | + | chr5_2:6816496-6816515 | None:intergenic | 55.0% |
GGACCCTCGCTTTCAGCACT+TGG | + | chr5_2:6815268-6815287 | Msa0753100:three_prime_UTR | 60.0% | |
! | CATGGTGGAGGTTGCGACTG+TGG | - | chr5_2:6815313-6815332 | Msa0753110:CDS | 60.0% |
AGGTTGCGACTGTGGTGGCT+GGG | - | chr5_2:6815321-6815340 | Msa0753110:CDS | 60.0% | |
GGTGGAGGTTGCGACTGTGG+TGG | - | chr5_2:6815316-6815335 | Msa0753110:CDS | 65.0% | |
GAGGTTGCGACTGTGGTGGC+TGG | - | chr5_2:6815320-6815339 | Msa0753110:CDS | 65.0% | |
CGACTGTGGTGGCTGGGACA+TGG | - | chr5_2:6815327-6815346 | Msa0753110:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5_2 | gene | 6813855 | 6816858 | 6813855 | ID=Msa0753110;Name=Msa0753110 |
chr5_2 | mRNA | 6813855 | 6816858 | 6813855 | ID=Msa0753110-mRNA-1;Parent=Msa0753110;Name=Msa0753110-mRNA-1;_AED=0.27;_eAED=0.27;_QI=0|1|0.5|1|1|1|2|403|642 |
chr5_2 | exon | 6813855 | 6814590 | 6813855 | ID=Msa0753110-mRNA-1:exon:3015;Parent=Msa0753110-mRNA-1 |
chr5_2 | exon | 6815263 | 6816858 | 6815263 | ID=Msa0753110-mRNA-1:exon:3014;Parent=Msa0753110-mRNA-1 |
chr5_2 | CDS | 6815263 | 6816858 | 6815263 | ID=Msa0753110-mRNA-1:cds;Parent=Msa0753110-mRNA-1 |
chr5_2 | CDS | 6814258 | 6814590 | 6814258 | ID=Msa0753110-mRNA-1:cds;Parent=Msa0753110-mRNA-1 |
chr5_2 | three_prime_UTR | 6813855 | 6814257 | 6813855 | ID=Msa0753110-mRNA-1:three_prime_utr;Parent=Msa0753110-mRNA-1 |
Gene Sequence |
Protein sequence |