AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0753110


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0753110 MtrunA17_Chr5g0397401 87.714 643 56 3 1 642 1 621 0.0 1039
Msa0753110 MtrunA17_Chr8g0386851 50.870 747 244 20 1 642 1 729 0.0 576
Msa0753110 MtrunA17_Chr4g0032351 30.081 369 197 15 292 641 549 875 1.01e-26 116
Msa0753110 MtrunA17_Chr7g0240931 29.966 297 167 11 292 572 530 801 1.10e-26 115
Msa0753110 MtrunA17_Chr1g0186181 28.947 342 175 11 289 573 264 594 5.74e-26 112
Msa0753110 MtrunA17_Chr2g0328721 31.803 305 158 13 292 581 608 877 4.81e-25 110
Msa0753110 MtrunA17_Chr4g0008861 27.297 370 222 13 215 572 542 876 8.83e-25 110
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0753110 AT4G11450.1 35.841 731 317 24 16 642 12 694 3.49e-94 305
Msa0753110 AT1G63520.1 33.075 387 194 11 284 642 179 528 2.18e-50 183
Msa0753110 AT5G59020.1 29.570 372 190 15 292 641 458 779 4.20e-25 111
Msa0753110 AT2G29510.1 28.689 366 193 15 292 641 525 838 9.86e-24 107
Msa0753110 AT1G04490.9 33.168 202 94 8 391 573 210 389 3.41e-21 96.7
Msa0753110 AT1G04490.5 33.168 202 94 8 391 573 210 389 3.41e-21 96.7
Msa0753110 AT1G04490.6 33.168 202 94 8 391 573 210 389 3.41e-21 96.7
Msa0753110 AT1G04490.3 33.168 202 94 8 391 573 210 389 3.41e-21 96.7
Msa0753110 AT1G04490.7 33.168 202 94 8 391 573 210 389 3.41e-21 96.7
Msa0753110 AT1G04490.2 33.168 202 94 8 391 573 210 389 3.41e-21 96.7
Msa0753110 AT1G04490.1 33.168 202 94 8 391 573 210 389 3.41e-21 96.7
Msa0753110 AT1G04490.8 33.168 202 94 8 391 573 210 389 3.41e-21 96.7
Msa0753110 AT5G01030.3 41.379 116 59 2 457 572 612 718 6.21e-21 98.2
Msa0753110 AT5G01030.1 41.379 116 59 2 457 572 612 718 6.21e-21 98.2
Msa0753110 AT5G01030.2 41.379 116 59 2 457 572 612 718 6.21e-21 98.2
Msa0753110 AT2G33360.2 39.831 118 65 2 459 576 323 434 1.77e-20 95.1
Msa0753110 AT2G33360.1 39.831 118 65 2 459 576 478 589 2.66e-20 95.5
Msa0753110 AT2G37930.3 34.234 111 62 2 461 571 429 528 2.49e-14 76.6
Msa0753110 AT2G37930.4 34.234 111 62 2 461 571 429 528 2.49e-14 76.6
Msa0753110 AT2G37930.1 34.234 111 62 2 461 571 401 500 2.52e-14 76.6
Msa0753110 AT1G04490.4 32.836 134 61 5 391 505 210 333 4.75e-12 68.6

Find 123 sgRNAs with CRISPR-Local

Find 178 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTACAATATAGACAATATT+TGG 0.208992 5_2:+6813883 Msa0753100:intron
GTTATTGATTCTCTTGTAAT+TGG 0.213853 5_2:-6816275 Msa0753110:CDS
GAGTAGGTAATGCTTTAAAT+TGG 0.219018 5_2:-6815878 Msa0753110:CDS
TGTTGGTAGGACCTGAAATT+TGG 0.234521 5_2:-6814131 Msa0753110:three_prime_UTR
CTGATTTGGACTCTGATAAA+TGG 0.241736 5_2:+6816622 None:intergenic
GCATTAGAAGATGGAGTAAT+TGG 0.242621 5_2:-6815732 Msa0753110:CDS
ATTTGTCAATAGAGAAATTA+AGG 0.247687 5_2:-6816027 Msa0753110:CDS
TTCAAAGATTAGAAGTAATA+AGG 0.259001 5_2:-6816297 Msa0753110:CDS
GCACTTTATATGTTCAAATA+AGG 0.264367 5_2:+6813985 Msa0753100:intron
TTTACCTTAAACTCAAAATA+AGG 0.270888 5_2:+6815936 None:intergenic
GAGGTTGCGACTGTGGTGGC+TGG 0.277543 5_2:-6815371 Msa0753110:CDS
GAAGAAAATGGCCACAATTC+AGG 0.288041 5_2:-6816600 Msa0753110:CDS
GCCCGCCCAATAGGAGAAAA+AGG 0.312049 5_2:+6814262 Msa0753100:three_prime_UTR
ATGTTCACTTACCAAATTTC+AGG 0.315147 5_2:+6814120 Msa0753100:intron
TCTAGTCTATGAGATCTAAA+TGG 0.321402 5_2:+6816671 None:intergenic
AAGGAGAAATCATGTAGAAA+TGG 0.325403 5_2:-6816743 Msa0753110:CDS
TTTGGTGTTACAAATTATCT+TGG 0.330407 5_2:+6813901 Msa0753100:intron
ACCAACAATTGCATACAATA+TGG 0.339112 5_2:+6814147 Msa0753100:CDS
ATGAGATGGAAGAACAGAAT+TGG 0.341418 5_2:+6816787 None:intergenic
CATTCACTCCTATTAGAAAA+AGG 0.353126 5_2:-6816157 Msa0753110:CDS
CAATCACTTTCTGATGGATA+TGG 0.355890 5_2:+6816206 None:intergenic
AAAGGTAGGAGTACTTTCTT+TGG 0.371277 5_2:+6814564 Msa0753100:three_prime_UTR
GAGTCCAAATCAGAAGAAAA+TGG 0.371965 5_2:-6816612 Msa0753110:CDS
TTTGCAACAAAGGCATGTTC+AGG 0.382252 5_2:+6815909 None:intergenic
ACACTTCATGCCCGCCCAAT+AGG 0.384596 5_2:+6814253 Msa0753100:three_prime_UTR
TGGAGTAATTGGAAACTATA+TGG 0.389111 5_2:-6815721 Msa0753110:CDS
AATATTGTCTATATTGTAAT+GGG 0.393251 5_2:-6813880 Msa0753110:three_prime_UTR
CTCATAGCTGACAATATTGA+TGG 0.400939 5_2:+6814052 Msa0753100:intron
GGTAGAGGTGCCATGCAAAA+TGG 0.403175 5_2:+6814456 Msa0753100:three_prime_UTR
AGTAGGTAATGCTTTAAATT+GGG 0.403955 5_2:-6815877 Msa0753110:CDS
GGATGAAATTCACATCAATA+TGG 0.410646 5_2:-6814092 Msa0753110:three_prime_UTR
ACTAGTGACAACTCTTGTTC+TGG 0.422154 5_2:-6816548 Msa0753110:CDS
AGGAGAAATCATGTAGAAAT+GGG 0.428589 5_2:-6816742 Msa0753110:CDS
AAACAATAGCAGCACTTTCA+AGG 0.433528 5_2:+6815592 None:intergenic
ATTGTCAGCTATGAGTTATA+AGG 0.434506 5_2:-6814044 Msa0753110:three_prime_UTR
TATTGTAATGGGATAATAAG+AGG 0.438232 5_2:-6813869 Msa0753110:three_prime_UTR
AAATATTGTCTATATTGTAA+TGG 0.438286 5_2:-6813881 Msa0753110:three_prime_UTR
AACGAAGAATAATGCAGGCT+TGG 0.438605 5_2:-6815826 Msa0753110:CDS
CGACTGTGGTGGCTGGGACA+TGG 0.444536 5_2:-6815364 Msa0753110:CDS
GGCAAACCATGGTTTCCAAT+TGG 0.448117 5_2:+6815447 Msa0753100:three_prime_UTR
CTTCAGCGCTAAGGAAGAAC+AGG 0.449187 5_2:-6814434 Msa0753110:CDS
GAATTGCCTAAAAGAATAAG+AGG 0.449551 5_2:+6815336 Msa0753100:three_prime_UTR
AAAGAAAGTACTCCTACCTT+TGG 0.451706 5_2:-6814562 Msa0753110:CDS
ATTATTGATGGGACAAGAGT+TGG 0.452032 5_2:-6816843 None:intergenic
ATGCAAAATGGCGACGCAAA+TGG 0.453647 5_2:+6814468 Msa0753100:three_prime_UTR
TTGGTGTTACAAATTATCTT+GGG 0.454142 5_2:+6813902 Msa0753100:intron
TCGAGTTGCGGCCTTCAATC+AGG 0.454643 5_2:+6814198 Msa0753100:CDS
TGAAGAAATATCACTTGGTA+TGG 0.455014 5_2:+6815497 Msa0753100:three_prime_UTR
TCCATATTGTATGCAATTGT+TGG 0.457862 5_2:-6814148 Msa0753110:three_prime_UTR
GAATGAATAGTCAGCTCTCA+TGG 0.463256 5_2:-6813953 Msa0753110:three_prime_UTR
TGAGATGGAAGAACAGAATT+GGG 0.465267 5_2:+6816788 None:intergenic
TTATGTTCTGCATTAGAAGA+TGG 0.466903 5_2:-6815741 Msa0753110:CDS
AGATTACCATGCAAATGAAC+AGG 0.469037 5_2:+6815984 None:intergenic
GTGAAGGTGGTATTACCAAT+TGG 0.472172 5_2:-6815462 Msa0753110:CDS
ACGAAGAATAATGCAGGCTT+GGG 0.479565 5_2:-6815825 Msa0753110:CDS
CTGTTCTTCCTTAGCGCTGA+AGG 0.482475 5_2:+6814435 Msa0753100:three_prime_UTR
TTCCTTAGCGCTGAAGGTAG+AGG 0.484557 5_2:+6814441 Msa0753100:three_prime_UTR
ACCTTCTTCAGTAATATCTC+AGG 0.485628 5_2:-6816468 Msa0753110:CDS
TTCTTGTTCCTGTGCTTGTG+TGG 0.488779 5_2:-6816414 Msa0753110:CDS
TGCTCACCTGTTCATTTGCA+TGG 0.492446 5_2:-6815990 Msa0753110:CDS
TCCTGAGATATTACTGAAGA+AGG 0.493642 5_2:+6816467 None:intergenic
TGACAAAGATTCATCATCAA+TGG 0.501640 5_2:-6815790 Msa0753110:CDS
TTCCAACATAGCCTGATTGA+AGG 0.507925 5_2:-6814209 Msa0753110:three_prime_UTR
GGCATGACATTAGTTGAAGA+GGG 0.515356 5_2:-6814541 Msa0753110:CDS
ATGCCTTTGTTGCAAAGACA+TGG 0.516018 5_2:-6815902 Msa0753110:CDS
AAACTGTTTGAATGCGAAGA+AGG 0.517043 5_2:-6816762 Msa0753110:CDS
AGGTTGCGACTGTGGTGGCT+GGG 0.520329 5_2:-6815370 Msa0753110:CDS
TTGCAACAAAGGCATGTTCA+GGG 0.525799 5_2:+6815910 None:intergenic
GATGAACAATCACTTTCTGA+TGG 0.526712 5_2:+6816200 None:intergenic
CAGTCATAACAGAGGAGAAG+AGG 0.532964 5_2:-6814336 Msa0753110:CDS
TGTGGAGAAATATCAATCAC+TGG 0.535638 5_2:-6815283 Msa0753110:CDS
CACCTCTACCTTCAGCGCTA+AGG 0.536910 5_2:-6814443 Msa0753110:CDS
TATTGTATGCAATTGTTGGT+AGG 0.537280 5_2:-6814144 Msa0753110:three_prime_UTR
ATACAATATGGACTCATAGC+TGG 0.537713 5_2:+6814159 Msa0753100:CDS
CTTCATCGTTACTTGATCGA+TGG 0.538533 5_2:-6815404 Msa0753110:CDS
GCCTAAAAGAATAAGAGGGC+AGG 0.547406 5_2:+6815341 Msa0753100:three_prime_UTR
ATTGTAATGGGATAATAAGA+GGG 0.550658 5_2:-6813868 Msa0753110:three_prime_UTR
TCTAGTGTAGTAGAAGTAGC+AGG 0.550700 5_2:-6816329 Msa0753110:CDS
GAAAGCTTGAAATACAAAAG+AGG 0.552857 5_2:-6815546 Msa0753110:CDS
ATTAGAACGAAGAATAATGC+AGG 0.554547 5_2:-6815831 Msa0753110:CDS
GCTGTGATCCACACAAGCAC+AGG 0.556818 5_2:+6816406 None:intergenic
TCATGAAGATAGCCCTCTTG+TGG 0.557960 5_2:-6815301 Msa0753110:CDS
TGGCATGACATTAGTTGAAG+AGG 0.559062 5_2:-6814542 Msa0753110:CDS
GGCCTTCAATCAGGCTATGT+TGG 0.563061 5_2:+6814207 Msa0753100:CDS
CATGGTGGAGGTTGCGACTG+TGG 0.566215 5_2:-6815378 Msa0753110:CDS
AAGCTTTCTCTCTTATGAAG+CGG 0.566415 5_2:+6815561 Msa0753100:three_prime_UTR
GTATTACCAATTGGAAACCA+TGG 0.570636 5_2:-6815453 Msa0753110:CDS
GATTGATATTTCTCCACAAG+AGG 0.571910 5_2:+6815288 Msa0753100:three_prime_UTR
GCACAGGAACAAGAAACAGA+TGG 0.584959 5_2:+6816422 None:intergenic
AAAAGATAGAAATTTCAAGT+AGG 0.590011 5_2:-6816571 Msa0753110:CDS
AAAAGGCGGGTTCAGCATAG+AGG 0.592188 5_2:+6814279 Msa0753100:three_prime_UTR
GAGAATATAGAAACTAGAAG+AGG 0.592815 5_2:-6816647 Msa0753110:CDS
TTCAACTAATGTCATGCCAA+AGG 0.596988 5_2:+6814546 Msa0753100:three_prime_UTR
TTGTGTGGTTCAGATGATGA+AGG 0.597591 5_2:-6816509 Msa0753110:CDS
AAATGGCCACAATTCAGGAA+AGG 0.598724 5_2:-6816595 Msa0753110:CDS
TTTCAGCACTTGGCAAACCA+TGG 0.600295 5_2:+6815436 Msa0753100:three_prime_UTR
CACTTTCTGATGGATATGGT+TGG 0.600468 5_2:+6816210 None:intergenic
GTTGCAAAGACATGGAGAGT+AGG 0.601872 5_2:-6815894 Msa0753110:CDS
ACTAATGTCATGCCAAAGGT+AGG 0.602147 5_2:+6814550 Msa0753100:three_prime_UTR
CATCGATCAAGTAACGATGA+AGG 0.603033 5_2:+6815405 Msa0753100:three_prime_UTR
AGATGATGAAGGTTCTGTTG+AGG 0.604425 5_2:-6816498 Msa0753110:CDS
GTCTATGAGATCTAAATGGA+AGG 0.606001 5_2:+6816675 None:intergenic
TTACTTGATCGATGGAAACA+TGG 0.608456 5_2:-6815396 Msa0753110:CDS
TCTCCATGTCTTTGCAACAA+AGG 0.610158 5_2:+6815899 None:intergenic
TGCAACAAAGGCATGTTCAG+GGG 0.610690 5_2:+6815911 None:intergenic
TCATAGCTGACAATATTGAT+GGG 0.611374 5_2:+6814053 Msa0753100:intron
TTCACTAGTAGAGCAAGTGA+AGG 0.612894 5_2:-6815478 Msa0753110:CDS
ATTGATATTTCTCCACAAGA+GGG 0.615796 5_2:+6815289 Msa0753100:three_prime_UTR
TTTGCCAAGTGCTGAAAGCG+AGG 0.618483 5_2:-6815430 Msa0753110:CDS
TGAAATTTGGTAAGTGAACA+TGG 0.619849 5_2:-6814118 Msa0753110:three_prime_UTR
ACTAGTAGAGCAAGTGAAGG+TGG 0.627677 5_2:-6815475 Msa0753110:CDS
GCATGACATTAGTTGAAGAG+GGG 0.628529 5_2:-6814540 Msa0753110:CDS
AATTGCCTAAAAGAATAAGA+GGG 0.636194 5_2:+6815337 Msa0753100:three_prime_UTR
ACTAGTGAAGAAATATCACT+TGG 0.637185 5_2:+6815492 Msa0753100:three_prime_UTR
GACAGTGTCTAATATTCACA+AGG 0.640826 5_2:-6814314 Msa0753110:CDS
TTGCCAAGTGCTGAAAGCGA+GGG 0.650835 5_2:-6815429 Msa0753110:CDS
TTTGGTAAGTGAACATGGTG+AGG 0.652629 5_2:-6814113 Msa0753110:three_prime_UTR
TAGAAATGGGAAATTCAATG+AGG 0.676384 5_2:-6816729 Msa0753110:CDS
GGTGGAGGTTGCGACTGTGG+TGG 0.681780 5_2:-6815375 Msa0753110:CDS
GATCGATGGAAACATGGTGG+AGG 0.686983 5_2:-6815390 Msa0753110:CDS
CTTGATCGATGGAAACATGG+TGG 0.691146 5_2:-6815393 Msa0753110:CDS
CATCAAATCAGTCATAACAG+AGG 0.691271 5_2:-6814344 Msa0753110:CDS
ACAGTGTCTAATATTCACAA+GGG 0.748410 5_2:-6814313 Msa0753110:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ACTTACATTTTATCTATTTT+TGG - chr5_2:6816093-6816112 Msa0753110:CDS 15.0%
!! ATTACAATATAGACAATATT+TGG + chr5_2:6816811-6816830 None:intergenic 15.0%
!! AAATATTGTCTATATTGTAA+TGG - chr5_2:6816810-6816829 Msa0753110:CDS 15.0%
!! AATATTGTCTATATTGTAAT+GGG - chr5_2:6816811-6816830 Msa0753110:CDS 15.0%
!!! AAAAGATAGAAATTTCAAGT+AGG - chr5_2:6814120-6814139 Msa0753110:three_prime_UTR 20.0%
!! TTCAAAGATTAGAAGTAATA+AGG - chr5_2:6814394-6814413 Msa0753110:CDS 20.0%
!! ATTTGTCAATAGAGAAATTA+AGG - chr5_2:6814664-6814683 Msa0753110:intron 20.0%
!! TTTACCTTAAACTCAAAATA+AGG + chr5_2:6814758-6814777 Msa0753100:intron 20.0%
!!! TGCAATTGTTTTATAAAATG+TGG + chr5_2:6815765-6815784 None:intergenic 20.0%
!!! TTTTGTTGAATACAAATAAC+AGG + chr5_2:6815859-6815878 None:intergenic 20.0%
!! GTACTATAAAAAACAATAAG+AGG + chr5_2:6816075-6816094 None:intergenic 20.0%
!!! GTTATTGATTCTCTTGTAAT+TGG - chr5_2:6814416-6814435 Msa0753110:CDS 25.0%
!!! ACTTTTTTTGACTTTGTGAA+AGG + chr5_2:6814566-6814585 Msa0753100:three_prime_UTR 25.0%
! AAAAAAAGTTGCAAGAAACA+TGG - chr5_2:6814577-6814596 Msa0753110:intron 25.0%
! TGTCAAAAATCTTTGTTGAA+TGG - chr5_2:6814602-6814621 Msa0753110:intron 25.0%
!!! ACATCCTTATTTTGAGTTTA+AGG - chr5_2:6814751-6814770 Msa0753110:intron 25.0%
!! AGTAGGTAATGCTTTAAATT+GGG - chr5_2:6814814-6814833 Msa0753110:intron 25.0%
! AATTGCCTAAAAGAATAAGA+GGG + chr5_2:6815357-6815376 Msa0753100:three_prime_UTR 25.0%
! TGAAATTTAATCTTTACCTG+AGG + chr5_2:6815448-6815467 Msa0753100:three_prime_UTR 25.0%
! TCATATAAAGTCTTTCTTGA+AGG - chr5_2:6815465-6815484 Msa0753110:CDS 25.0%
! TTCTTATTAAATTCGAGAAC+TGG + chr5_2:6815513-6815532 Msa0753100:three_prime_UTR 25.0%
! ATTATGACGATTTAATCGAT+TGG + chr5_2:6815707-6815726 None:intergenic 25.0%
! TCATAGAATGCATATACAAT+CGG - chr5_2:6815906-6815925 Msa0753110:CDS 25.0%
!! AAAAAGTTAGTTAGCCTAAT+TGG - chr5_2:6815939-6815958 Msa0753110:CDS 25.0%
!!! TACAACAATGTGTTTTTGAT+TGG - chr5_2:6816000-6816019 Msa0753110:CDS 25.0%
!! GTAATGAAGATAATTTTGCA+TGG + chr5_2:6816194-6816213 None:intergenic 25.0%
! GCACTTTATATGTTCAAATA+AGG + chr5_2:6816709-6816728 None:intergenic 25.0%
!!! TTGGTGTTACAAATTATCTT+GGG + chr5_2:6816792-6816811 None:intergenic 25.0%
!!! TTTGGTGTTACAAATTATCT+TGG + chr5_2:6816793-6816812 None:intergenic 25.0%
!! TATTGTAATGGGATAATAAG+AGG - chr5_2:6816822-6816841 Msa0753110:CDS 25.0%
!! ATTGTAATGGGATAATAAGA+GGG - chr5_2:6816823-6816842 Msa0753110:CDS 25.0%
!! TTCAAACAGTTTTGATGAGA+TGG + chr5_2:6813921-6813940 Msa0753100:intron 30.0%
AAGGAGAAATCATGTAGAAA+TGG - chr5_2:6813948-6813967 Msa0753110:three_prime_UTR 30.0%
AGGAGAAATCATGTAGAAAT+GGG - chr5_2:6813949-6813968 Msa0753110:three_prime_UTR 30.0%
TAGAAATGGGAAATTCAATG+AGG - chr5_2:6813962-6813981 Msa0753110:three_prime_UTR 30.0%
TCTAGTCTATGAGATCTAAA+TGG + chr5_2:6814023-6814042 Msa0753100:intron 30.0%
GAGAATATAGAAACTAGAAG+AGG - chr5_2:6814044-6814063 Msa0753110:three_prime_UTR 30.0%
!!! AGCATTTTTTATGCATTGTG+TGG - chr5_2:6814167-6814186 Msa0753110:three_prime_UTR 30.0%
TAATTCTCCTCTTCAAAAAG+TGG - chr5_2:6814442-6814461 Msa0753110:CDS 30.0%
CATTCACTCCTATTAGAAAA+AGG - chr5_2:6814534-6814553 Msa0753110:CDS 30.0%
!! GGATTTAGCCTTTTTCTAAT+AGG + chr5_2:6814545-6814564 Msa0753100:three_prime_UTR 30.0%
!! CTCAAGTTGAAAAACAAACA+AGG - chr5_2:6814728-6814747 Msa0753110:intron 30.0%
! GAGTAGGTAATGCTTTAAAT+TGG - chr5_2:6814813-6814832 Msa0753110:intron 30.0%
ATTAGAACGAAGAATAATGC+AGG - chr5_2:6814860-6814879 Msa0753110:intron 30.0%
TGACAAAGATTCATCATCAA+TGG - chr5_2:6814901-6814920 Msa0753110:intron 30.0%
TTATGTTCTGCATTAGAAGA+TGG - chr5_2:6814950-6814969 Msa0753110:intron 30.0%
TGGAGTAATTGGAAACTATA+TGG - chr5_2:6814970-6814989 Msa0753110:intron 30.0%
GAAAGCTTGAAATACAAAAG+AGG - chr5_2:6815145-6815164 Msa0753110:intron 30.0%
TGAAGAAATATCACTTGGTA+TGG + chr5_2:6815197-6815216 Msa0753100:intron 30.0%
ACTAGTGAAGAAATATCACT+TGG + chr5_2:6815202-6815221 Msa0753100:intron 30.0%
GAATTGCCTAAAAGAATAAG+AGG + chr5_2:6815358-6815377 Msa0753100:three_prime_UTR 30.0%
ATTGATATTTCTCCACAAGA+GGG + chr5_2:6815405-6815424 Msa0753100:three_prime_UTR 30.0%
ATCGTGAAAAAATCAGTACA+GGG + chr5_2:6815653-6815672 None:intergenic 30.0%
AATCGTGAAAAAATCAGTAC+AGG + chr5_2:6815654-6815673 None:intergenic 30.0%
! TCACGATTTAAAAGCATGTT+TGG - chr5_2:6815666-6815685 Msa0753110:CDS 30.0%
TATCATCATATGAGAAGAGA+AGG + chr5_2:6815742-6815761 None:intergenic 30.0%
GAACATTCTTCAAACTAACT+AGG - chr5_2:6815824-6815843 Msa0753110:CDS 30.0%
!!! TTTATCTATTTTTGGTGCAC+AGG - chr5_2:6816101-6816120 Msa0753110:CDS 30.0%
!!! TTATCTATTTTTGGTGCACA+GGG - chr5_2:6816102-6816121 Msa0753110:CDS 30.0%
ACAGTGTCTAATATTCACAA+GGG - chr5_2:6816378-6816397 Msa0753110:CDS 30.0%
TCCATATTGTATGCAATTGT+TGG - chr5_2:6816543-6816562 Msa0753110:CDS 30.0%
ACCAACAATTGCATACAATA+TGG + chr5_2:6816547-6816566 None:intergenic 30.0%
TATTGTATGCAATTGTTGGT+AGG - chr5_2:6816547-6816566 Msa0753110:CDS 30.0%
ATGTTCACTTACCAAATTTC+AGG + chr5_2:6816574-6816593 None:intergenic 30.0%
TGAAATTTGGTAAGTGAACA+TGG - chr5_2:6816573-6816592 Msa0753110:CDS 30.0%
GGATGAAATTCACATCAATA+TGG - chr5_2:6816599-6816618 Msa0753110:CDS 30.0%
TCATAGCTGACAATATTGAT+GGG + chr5_2:6816641-6816660 None:intergenic 30.0%
ATTGTCAGCTATGAGTTATA+AGG - chr5_2:6816647-6816666 Msa0753110:CDS 30.0%
TGAGATGGAAGAACAGAATT+GGG + chr5_2:6813906-6813925 Msa0753100:intron 35.0%
ATGAGATGGAAGAACAGAAT+TGG + chr5_2:6813907-6813926 Msa0753100:intron 35.0%
AAACTGTTTGAATGCGAAGA+AGG - chr5_2:6813929-6813948 Msa0753110:three_prime_UTR 35.0%
GTCTATGAGATCTAAATGGA+AGG + chr5_2:6814019-6814038 Msa0753100:intron 35.0%
!! CTGATTTGGACTCTGATAAA+TGG + chr5_2:6814072-6814091 Msa0753100:intron 35.0%
GAGTCCAAATCAGAAGAAAA+TGG - chr5_2:6814079-6814098 Msa0753110:three_prime_UTR 35.0%
! CTTTTTCCTTTCCTGAATTG+TGG + chr5_2:6814105-6814124 Msa0753100:intron 35.0%
ACCTTCTTCAGTAATATCTC+AGG - chr5_2:6814223-6814242 Msa0753110:three_prime_UTR 35.0%
TCCTGAGATATTACTGAAGA+AGG + chr5_2:6814227-6814246 Msa0753100:exon 35.0%
!!! GAGATTTCCACTTTTTGAAG+AGG + chr5_2:6814452-6814471 Msa0753100:three_prime_UTR 35.0%
! CAATCACTTTCTGATGGATA+TGG + chr5_2:6814488-6814507 Msa0753100:three_prime_UTR 35.0%
GATGAACAATCACTTTCTGA+TGG + chr5_2:6814494-6814513 Msa0753100:three_prime_UTR 35.0%
AGATTACCATGCAAATGAAC+AGG + chr5_2:6814710-6814729 Msa0753100:intron 35.0%
GCATTAGAAGATGGAGTAAT+TGG - chr5_2:6814959-6814978 Msa0753110:intron 35.0%
!! TGGCTGTAAGACTTTTTCTT+TGG + chr5_2:6815046-6815065 Msa0753100:intron 35.0%
AAACAATAGCAGCACTTTCA+AGG + chr5_2:6815102-6815121 Msa0753100:intron 35.0%
AAGCTTTCTCTCTTATGAAG+CGG + chr5_2:6815133-6815152 Msa0753100:intron 35.0%
GTATTACCAATTGGAAACCA+TGG - chr5_2:6815238-6815257 Msa0753110:intron 35.0%
TTACTTGATCGATGGAAACA+TGG - chr5_2:6815295-6815314 Msa0753110:CDS 35.0%
GATTGATATTTCTCCACAAG+AGG + chr5_2:6815406-6815425 Msa0753100:three_prime_UTR 35.0%
TGTGGAGAAATATCAATCAC+TGG - chr5_2:6815408-6815427 Msa0753110:CDS 35.0%
CTTTCTTGAAGGAACTTAGA+TGG - chr5_2:6815476-6815495 Msa0753110:CDS 35.0%
TATTCTTAAATGCGCGTTCA+TGG + chr5_2:6815612-6815631 None:intergenic 35.0%
GAAGAATGTTCTAACTACTG+CGG + chr5_2:6815815-6815834 None:intergenic 35.0%
!! AAAGGTAGGAGTACTTTCTT+TGG + chr5_2:6816130-6816149 None:intergenic 35.0%
!! AAAGAAAGTACTCCTACCTT+TGG - chr5_2:6816129-6816148 Msa0753110:CDS 35.0%
TTCAACTAATGTCATGCCAA+AGG + chr5_2:6816148-6816167 None:intergenic 35.0%
CATCAAATCAGTCATAACAG+AGG - chr5_2:6816347-6816366 Msa0753110:CDS 35.0%
GACAGTGTCTAATATTCACA+AGG - chr5_2:6816377-6816396 Msa0753110:CDS 35.0%
!! AAATATTTTCGCTCGAGTTG+CGG + chr5_2:6816508-6816527 None:intergenic 35.0%
ATACAATATGGACTCATAGC+TGG + chr5_2:6816535-6816554 None:intergenic 35.0%
CTCATAGCTGACAATATTGA+TGG + chr5_2:6816642-6816661 None:intergenic 35.0%
! TGGAAAAAATGTGGAGTATC+TGG - chr5_2:6816758-6816777 Msa0753110:CDS 35.0%
!! GTGGCCATTTTCTTCTGATT+TGG + chr5_2:6814086-6814105 Msa0753100:intron 40.0%
GAAGAAAATGGCCACAATTC+AGG - chr5_2:6814091-6814110 Msa0753110:three_prime_UTR 40.0%
AAATGGCCACAATTCAGGAA+AGG - chr5_2:6814096-6814115 Msa0753110:three_prime_UTR 40.0%
ACTAGTGACAACTCTTGTTC+TGG - chr5_2:6814143-6814162 Msa0753110:three_prime_UTR 40.0%
TTGTGTGGTTCAGATGATGA+AGG - chr5_2:6814182-6814201 Msa0753110:three_prime_UTR 40.0%
AGATGATGAAGGTTCTGTTG+AGG - chr5_2:6814193-6814212 Msa0753110:three_prime_UTR 40.0%
TCTAGTGTAGTAGAAGTAGC+AGG - chr5_2:6814362-6814381 Msa0753110:CDS 40.0%
! CACTTTCTGATGGATATGGT+TGG + chr5_2:6814484-6814503 Msa0753100:three_prime_UTR 40.0%
!! GTCAGCATCTTTTGTTGTGT+TGG + chr5_2:6814633-6814652 Msa0753100:intron 40.0%
! TTGCAACAAAGGCATGTTCA+GGG + chr5_2:6814784-6814803 Msa0753100:intron 40.0%
! TTTGCAACAAAGGCATGTTC+AGG + chr5_2:6814785-6814804 Msa0753100:intron 40.0%
ATGCCTTTGTTGCAAAGACA+TGG - chr5_2:6814789-6814808 Msa0753110:intron 40.0%
TCTCCATGTCTTTGCAACAA+AGG + chr5_2:6814795-6814814 Msa0753100:intron 40.0%
AACGAAGAATAATGCAGGCT+TGG - chr5_2:6814865-6814884 Msa0753110:intron 40.0%
ACGAAGAATAATGCAGGCTT+GGG - chr5_2:6814866-6814885 Msa0753110:intron 40.0%
!! GAGTTTTCGAAGCATCTTGT+TGG + chr5_2:6815066-6815085 Msa0753100:intron 40.0%
TTCACTAGTAGAGCAAGTGA+AGG - chr5_2:6815213-6815232 Msa0753110:intron 40.0%
GTGAAGGTGGTATTACCAAT+TGG - chr5_2:6815229-6815248 Msa0753110:intron 40.0%
CATCGATCAAGTAACGATGA+AGG + chr5_2:6815289-6815308 Msa0753100:three_prime_UTR 40.0%
CTTCATCGTTACTTGATCGA+TGG - chr5_2:6815287-6815306 Msa0753110:CDS 40.0%
CAATCCTATAGTATGTACGC+AGG + chr5_2:6815975-6815994 None:intergenic 40.0%
ACTAATGTCATGCCAAAGGT+AGG + chr5_2:6816144-6816163 None:intergenic 40.0%
TGGCATGACATTAGTTGAAG+AGG - chr5_2:6816149-6816168 Msa0753110:CDS 40.0%
GGCATGACATTAGTTGAAGA+GGG - chr5_2:6816150-6816169 Msa0753110:CDS 40.0%
GCATGACATTAGTTGAAGAG+GGG - chr5_2:6816151-6816170 Msa0753110:CDS 40.0%
TTCCAACATAGCCTGATTGA+AGG - chr5_2:6816482-6816501 Msa0753110:CDS 40.0%
! TGTTGGTAGGACCTGAAATT+TGG - chr5_2:6816560-6816579 Msa0753110:CDS 40.0%
TTTGGTAAGTGAACATGGTG+AGG - chr5_2:6816578-6816597 Msa0753110:CDS 40.0%
GAATGAATAGTCAGCTCTCA+TGG - chr5_2:6816738-6816757 Msa0753110:CDS 40.0%
CAGCTCTCATGGAAAAAATG+TGG - chr5_2:6816749-6816768 Msa0753110:CDS 40.0%
GCACAGGAACAAGAAACAGA+TGG + chr5_2:6814272-6814291 Msa0753100:three_prime_UTR 45.0%
TTCTTGTTCCTGTGCTTGTG+TGG - chr5_2:6814277-6814296 Msa0753110:CDS 45.0%
TGCTCACCTGTTCATTTGCA+TGG - chr5_2:6814701-6814720 Msa0753110:intron 45.0%
! TGCAACAAAGGCATGTTCAG+GGG + chr5_2:6814783-6814802 Msa0753100:intron 45.0%
GTTGCAAAGACATGGAGAGT+AGG - chr5_2:6814797-6814816 Msa0753110:intron 45.0%
ACTAGTAGAGCAAGTGAAGG+TGG - chr5_2:6815216-6815235 Msa0753110:intron 45.0%
GGCAAACCATGGTTTCCAAT+TGG + chr5_2:6815247-6815266 Msa0753100:intron 45.0%
TTTCAGCACTTGGCAAACCA+TGG + chr5_2:6815258-6815277 Msa0753100:intron 45.0%
CTTGATCGATGGAAACATGG+TGG - chr5_2:6815298-6815317 Msa0753110:CDS 45.0%
! GCCTGCCCTCTTATTCTTTT+AGG - chr5_2:6815349-6815368 Msa0753110:CDS 45.0%
GCCTAAAAGAATAAGAGGGC+AGG + chr5_2:6815353-6815372 Msa0753100:three_prime_UTR 45.0%
TCATGAAGATAGCCCTCTTG+TGG - chr5_2:6815390-6815409 Msa0753110:CDS 45.0%
GCGCGTTCATGGTATTTGAT+AGG + chr5_2:6815601-6815620 None:intergenic 45.0%
! ATCCAGTCAGCGCTGAATTA+TGG - chr5_2:6815787-6815806 Msa0753110:CDS 45.0%
!! TTCCATAATTCAGCGCTGAC+TGG + chr5_2:6815792-6815811 None:intergenic 45.0%
!! CAGGAGCTTGTTGTCCAATT+AGG + chr5_2:6815956-6815975 None:intergenic 45.0%
AGCTCCTGCGTACATACTAT+AGG - chr5_2:6815968-6815987 Msa0753110:CDS 45.0%
ATGCAAAATGGCGACGCAAA+TGG + chr5_2:6816226-6816245 None:intergenic 45.0%
!! ATTTGCGTCGCCATTTTGCA+TGG - chr5_2:6816225-6816244 Msa0753110:CDS 45.0%
CAGTCATAACAGAGGAGAAG+AGG - chr5_2:6816355-6816374 Msa0753110:CDS 45.0%
! AACCCGCCTTTTTCTCCTAT+TGG - chr5_2:6816423-6816442 Msa0753110:CDS 45.0%
! ACCCGCCTTTTTCTCCTATT+GGG - chr5_2:6816424-6816443 Msa0753110:CDS 45.0%
!! TTTGCCAAGTGCTGAAAGCG+AGG - chr5_2:6815261-6815280 Msa0753110:intron 50.0%
!! TTGCCAAGTGCTGAAAGCGA+GGG - chr5_2:6815262-6815281 Msa0753110:intron 50.0%
GATCGATGGAAACATGGTGG+AGG - chr5_2:6815301-6815320 Msa0753110:CDS 50.0%
! GGAACTTTTCTCTCAGCCTC+AGG - chr5_2:6815429-6815448 Msa0753110:CDS 50.0%
!! GGTAGAGGTGCCATGCAAAA+TGG + chr5_2:6816238-6816257 None:intergenic 50.0%
! TTCCTTAGCGCTGAAGGTAG+AGG + chr5_2:6816253-6816272 None:intergenic 50.0%
! CTGTTCTTCCTTAGCGCTGA+AGG + chr5_2:6816259-6816278 None:intergenic 50.0%
CTTCAGCGCTAAGGAAGAAC+AGG - chr5_2:6816257-6816276 Msa0753110:CDS 50.0%
! AAAAGGCGGGTTCAGCATAG+AGG + chr5_2:6816415-6816434 None:intergenic 50.0%
GCCCAATAGGAGAAAAAGGC+GGG + chr5_2:6816428-6816447 None:intergenic 50.0%
CGCCCAATAGGAGAAAAAGG+CGG + chr5_2:6816429-6816448 None:intergenic 50.0%
! CGCCTTTTTCTCCTATTGGG+CGG - chr5_2:6816427-6816446 Msa0753110:CDS 50.0%
! GCCTTTTTCTCCTATTGGGC+GGG - chr5_2:6816428-6816447 Msa0753110:CDS 50.0%
GGCCTTCAATCAGGCTATGT+TGG + chr5_2:6816487-6816506 None:intergenic 50.0%
GCTGTGATCCACACAAGCAC+AGG + chr5_2:6814288-6814307 Msa0753100:three_prime_UTR 55.0%
CACCTCTACCTTCAGCGCTA+AGG - chr5_2:6816248-6816267 Msa0753110:CDS 55.0%
GCCCGCCCAATAGGAGAAAA+AGG + chr5_2:6816432-6816451 None:intergenic 55.0%
ACACTTCATGCCCGCCCAAT+AGG + chr5_2:6816441-6816460 None:intergenic 55.0%
! TCGAGTTGCGGCCTTCAATC+AGG + chr5_2:6816496-6816515 None:intergenic 55.0%
GGACCCTCGCTTTCAGCACT+TGG + chr5_2:6815268-6815287 Msa0753100:three_prime_UTR 60.0%
! CATGGTGGAGGTTGCGACTG+TGG - chr5_2:6815313-6815332 Msa0753110:CDS 60.0%
AGGTTGCGACTGTGGTGGCT+GGG - chr5_2:6815321-6815340 Msa0753110:CDS 60.0%
GGTGGAGGTTGCGACTGTGG+TGG - chr5_2:6815316-6815335 Msa0753110:CDS 65.0%
GAGGTTGCGACTGTGGTGGC+TGG - chr5_2:6815320-6815339 Msa0753110:CDS 65.0%
CGACTGTGGTGGCTGGGACA+TGG - chr5_2:6815327-6815346 Msa0753110:CDS 65.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 6813855 6816858 6813855 ID=Msa0753110;Name=Msa0753110
chr5_2 mRNA 6813855 6816858 6813855 ID=Msa0753110-mRNA-1;Parent=Msa0753110;Name=Msa0753110-mRNA-1;_AED=0.27;_eAED=0.27;_QI=0|1|0.5|1|1|1|2|403|642
chr5_2 exon 6813855 6814590 6813855 ID=Msa0753110-mRNA-1:exon:3015;Parent=Msa0753110-mRNA-1
chr5_2 exon 6815263 6816858 6815263 ID=Msa0753110-mRNA-1:exon:3014;Parent=Msa0753110-mRNA-1
chr5_2 CDS 6815263 6816858 6815263 ID=Msa0753110-mRNA-1:cds;Parent=Msa0753110-mRNA-1
chr5_2 CDS 6814258 6814590 6814258 ID=Msa0753110-mRNA-1:cds;Parent=Msa0753110-mRNA-1
chr5_2 three_prime_UTR 6813855 6814257 6813855 ID=Msa0753110-mRNA-1:three_prime_utr;Parent=Msa0753110-mRNA-1
Gene Sequence

>Msa0753110

ATGGGACAAGAGTTGGATCTCAATGACAAGTCTTCTGTGAGTCTCAGTCCCAATTCTGTTCTTCCATCTCATCAAAACTGTTTGAATGCGAAGAAGGAGAAATCATGTAGAAATGGGAAATTCAATGAGGACTTTGCTGAGATCAATTCTTCATGCAAGAGCCTTCCATTTAGATCTCATAGACTAGAAGAGAATATAGAAACTAGAAGAGGTTCCATTTATCAGAGTCCAAATCAGAAGAAAATGGCCACAATTCAGGAAAGGAAAAAGATAGAAATTTCAAGTAGGACTAGTGACAACTCTTGTTCTGGTAGCATTTTTTATGCATTGTGTGGTTCAGATGATGAAGGTTCTGTTGAGGTTGAGACACCTTCTTCAGTAATATCTCAGGATTCAGAATTGAGTTCTCAATCTCCATCTGTTTCTTGTTCCTGTGCTTGTGTGGATCACAGCATATCAAGTAGTTTTATTGAATTGTGCATAAATTCAGATGTTTGTGATAAAAAATCTAGTGTAGTAGAAGTAGCAGGTTCAGTAAATTCAAAGATTAGAAGTAATAAGGTTATTGATTCTCTTGTAATTGGTAATAATTCTCCTCTTCAAAAAGTGGAAATCTCTCACTCTCACCAACCATATCCATCAGAAAGTGATTGTTCATCAAGAGTGAGTTCAAAAGTCTCATTCACTCCTATTAGAAAAAGGCTAAATCCTTTCACAAAGTCAAAAAAAGTTGCAAGAAACATGGCTTGTCAAAAATCTTTGTTGAATGGCTTTTCCAACACAACAAAAGATGCTGACATTGTTTCTGAATTTGTCAATAGAGAAATTAAGGATTCTAGTCTAGCATGCTCACCTGTTCATTTGCATGGTAATCTCAAGTTGAAAAACAAACAAGGACATCCTTATTTTGAGTTTAAGGTAAATTCCCCTGAACATGCCTTTGTTGCAAAGACATGGAGAGTAGGTAATGCTTTAAATTGGGTATATACATTTCACTCTGTTGATATTAGAACGAAGAATAATGCAGGCTTGGGAACTCAACATTGTGACAAAGATTCATCATCAATGGTAGCACAGATGCTAGTTTCTTGTAGTTTATGTTCTGCATTAGAAGATGGAGTAATTGGAAACTATATGGTTACAGAATTTGTGTTGTATGATTTTACTCATTCAAGAAAAAGTGTTATGCCAAAGAAAAAGTCTTACAGCCAACAAGATGCTTCGAAAACTCTGAATGCTTCTAGCCTTGAAAGTGCTGCTATTGTTTTGCGAATACCGCTTCATAAGAGAGAAAGCTTGAAATACAAAAGAGGTGATAGAACGAATACTAAAGCATATTCCATACCAAGTGATATTTCTTCACTAGTAGAGCAAGTGAAGGTGGTATTACCAATTGGAAACCATGGTTTGCCAAGTGCTGAAAGCGAGGGTCCTTCATCGTTACTTGATCGATGGAAACATGGTGGAGGTTGCGACTGTGGTGGCTGGGACATGGCCTGCCCTCTTATTCTTTTAGGCAATTCTAGTGTTCAGTTTCATGAAGATAGCCCTCTTGTGGAGAAATATCAATCACTGGAACTTTTCTCTCAGCCTCAGGGAACCAAAGAAAGTACTCCTACCTTTGGCATGACATTAGTTGAAGAGGGGCAATATGCAGTTGATTTCCATGCAAAATTATCTTCATTACAAGCTTTCTCCATTTGCGTCGCCATTTTGCATGGCACCTCTACCTTCAGCGCTAAGGAAGAACAGGCGAAAAATCAACAGTTATCTCAATGCAGTTCGTTAAATACACTTATTGAAGAAGAAGTAGAATCATTCATCAAATCAGTCATAACAGAGGAGAAGAGGACAGTGTCTAATATTCACAAGGGAATTCATCGATCCTCTATGCTGAACCCGCCTTTTTCTCCTATTGGGCGGGCATGA

Protein sequence

>Msa0753110

MGQELDLNDKSSVSLSPNSVLPSHQNCLNAKKEKSCRNGKFNEDFAEINSSCKSLPFRSHRLEENIETRRGSIYQSPNQKKMATIQERKKIEISSRTSDNSCSGSIFYALCGSDDEGSVEVETPSSVISQDSELSSQSPSVSCSCACVDHSISSSFIELCINSDVCDKKSSVVEVAGSVNSKIRSNKVIDSLVIGNNSPLQKVEISHSHQPYPSESDCSSRVSSKVSFTPIRKRLNPFTKSKKVARNMACQKSLLNGFSNTTKDADIVSEFVNREIKDSSLACSPVHLHGNLKLKNKQGHPYFEFKVNSPEHAFVAKTWRVGNALNWVYTFHSVDIRTKNNAGLGTQHCDKDSSSMVAQMLVSCSLCSALEDGVIGNYMVTEFVLYDFTHSRKSVMPKKKSYSQQDASKTLNASSLESAAIVLRIPLHKRESLKYKRGDRTNTKAYSIPSDISSLVEQVKVVLPIGNHGLPSAESEGPSSLLDRWKHGGGCDCGGWDMACPLILLGNSSVQFHEDSPLVEKYQSLELFSQPQGTKESTPTFGMTLVEEGQYAVDFHAKLSSLQAFSICVAILHGTSTFSAKEEQAKNQQLSQCSSLNTLIEEEVESFIKSVITEEKRTVSNIHKGIHRSSMLNPPFSPIGRA*