AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0754610


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0754610 MtrunA17_Chr5g0400661 87.393 349 22 5 1 342 1 334 0.0 594
Msa0754610 MtrunA17_Chr4g0054571 46.893 354 128 11 1 342 24 329 1.08e-81 251
Msa0754610 MtrunA17_Chr2g0280161 41.695 295 132 9 62 338 74 346 4.00e-57 189
Msa0754610 MtrunA17_Chr4g0049331 43.774 265 107 8 86 341 75 306 1.01e-54 181
Msa0754610 MtrunA17_Chr2g0333621 40.741 270 128 8 75 342 72 311 1.69e-52 176
Msa0754610 MtrunA17_Chr5g0400621 40.484 289 125 7 61 342 81 329 5.54e-50 169
Msa0754610 MtrunA17_Chr4g0054581 35.657 373 193 12 6 342 13 374 5.85e-49 168
Msa0754610 MtrunA17_Chr4g0054561 38.947 285 117 11 64 341 90 324 1.29e-48 166
Msa0754610 MtrunA17_Chr4g0054551 39.362 282 120 9 64 341 90 324 1.59e-47 163
Msa0754610 MtrunA17_Chr8g0336681 37.262 263 142 7 78 338 90 331 4.88e-47 162
Msa0754610 MtrunA17_Chr4g0002801 38.346 266 133 5 80 342 93 330 4.41e-46 159
Msa0754610 MtrunA17_Chr2g0333641 40.392 255 126 7 87 341 78 306 4.85e-46 159
Msa0754610 MtrunA17_Chr4g0002781 38.060 268 135 7 80 342 108 349 5.38e-45 157
Msa0754610 MtrunA17_Chr2g0307131 43.077 195 96 2 145 338 167 347 6.37e-44 154
Msa0754610 MtrunA17_Chr6g0468491 35.144 313 152 11 34 339 38 306 2.47e-43 152
Msa0754610 MtrunA17_Chr5g0400671 35.314 303 148 10 59 342 50 323 1.11e-42 150
Msa0754610 MtrunA17_Chr2g0307141 42.781 187 94 2 152 338 178 351 2.23e-42 150
Msa0754610 MtrunA17_Chr5g0400641 47.337 169 76 2 160 328 1 156 2.31e-42 144
Msa0754610 MtrunA17_Chr4g0054621 39.631 217 105 4 130 342 143 337 9.82e-41 145
Msa0754610 MtrunA17_Chr4g0033291 40.092 217 109 4 126 342 129 324 3.73e-40 144
Msa0754610 MtrunA17_Chr7g0225901 37.500 224 121 5 102 323 35 241 2.00e-38 137
Msa0754610 MtrunA17_Chr4g0033391 38.537 205 107 4 141 342 128 316 2.41e-38 139
Msa0754610 MtrunA17_Chr2g0333611 40.526 190 92 4 156 342 44 215 5.20e-38 135
Msa0754610 MtrunA17_Chr7g0249811 35.135 259 122 5 85 342 115 328 2.83e-37 136
Msa0754610 MtrunA17_Chr4g0033281 32.493 357 172 12 7 342 13 321 2.61e-35 131
Msa0754610 MtrunA17_Chr2g0333541 39.459 185 99 3 157 340 94 266 1.22e-32 122
Msa0754610 MtrunA17_Chr6g0468461 30.423 355 162 12 2 322 8 311 2.29e-32 124
Msa0754610 MtrunA17_Chr7g0233441 37.736 159 76 2 183 341 60 195 1.01e-25 102
Msa0754610 MtrunA17_Chr4g0002831 36.571 175 86 5 168 341 53 203 1.94e-24 99.0
Msa0754610 MtrunA17_Chr4g0002851 34.483 174 82 3 168 341 54 195 3.85e-24 97.8
Msa0754610 MtrunA17_Chr7g0275821 32.000 150 77 3 157 304 252 378 1.85e-17 82.8
Msa0754610 MtrunA17_Chr7g0260841 58.065 62 25 1 157 217 355 416 2.58e-16 79.7
Msa0754610 MtrunA17_Chr1g0185621 30.065 153 86 3 157 301 475 614 3.67e-15 76.6
Msa0754610 MtrunA17_Chr7g0273081 24.658 219 153 4 130 341 90 303 4.28e-14 72.0
Msa0754610 MtrunA17_Chr8g0366751 45.833 72 39 0 139 210 444 515 9.37e-14 72.4
Msa0754610 MtrunA17_Chr8g0346161 28.409 176 106 6 123 295 262 420 1.34e-13 71.6
Msa0754610 MtrunA17_Chr3g0131691 29.379 177 112 5 143 316 288 454 1.54e-13 71.2
Msa0754610 MtrunA17_Chr5g0411341 27.094 203 127 5 123 314 463 655 4.56e-13 70.1
Msa0754610 MtrunA17_Chr8g0386921 22.705 207 128 3 117 303 371 565 6.90e-12 66.6
Msa0754610 MtrunA17_Chr1g0211081 27.957 186 114 6 150 315 310 495 9.71e-12 65.9
Msa0754610 MtrunA17_Chr7g0270871 44.118 68 38 0 142 209 197 264 1.12e-11 65.5
Msa0754610 MtrunA17_Chr8g0346151 35.366 82 50 1 134 215 259 337 1.97e-11 64.7
Msa0754610 MtrunA17_Chr4g0028071 27.972 143 85 5 159 298 151 278 2.04e-11 64.3
Msa0754610 MtrunA17_Chr8g0365711 23.280 189 124 3 132 319 230 398 2.21e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0754610 AT4G37850.2 38.040 347 173 14 9 341 6 324 3.67e-50 170
Msa0754610 AT4G37850.1 38.040 347 173 14 9 341 6 324 3.67e-50 170
Msa0754610 AT2G22760.1 44.737 190 92 4 155 342 117 295 4.41e-46 159
Msa0754610 AT2G22750.2 47.291 203 95 4 142 341 108 301 3.17e-44 154
Msa0754610 AT2G22750.5 38.596 342 179 9 9 341 6 325 6.66e-44 154
Msa0754610 AT2G22750.3 38.596 342 179 9 9 341 10 329 6.80e-44 154
Msa0754610 AT2G22750.1 47.291 203 94 5 142 341 108 300 9.01e-43 150
Msa0754610 AT2G22750.4 38.596 342 178 10 9 341 10 328 2.08e-42 150
Msa0754610 AT2G22770.1 42.553 188 106 1 156 341 131 318 1.29e-40 145
Msa0754610 AT2G22760.2 45.562 169 80 3 155 322 117 274 2.19e-40 144
Msa0754610 AT2G46510.1 47.297 74 39 0 139 212 377 450 1.81e-16 80.9
Msa0754610 AT1G32640.1 30.500 200 114 6 139 328 434 618 4.16e-16 79.7
Msa0754610 AT4G09820.1 30.464 151 72 2 153 303 359 476 3.19e-14 73.9
Msa0754610 AT1G01260.1 39.241 79 48 0 137 215 413 491 4.31e-14 73.6
Msa0754610 AT1G01260.2 39.241 79 48 0 137 215 413 491 4.31e-14 73.6
Msa0754610 AT1G01260.3 39.241 79 48 0 137 215 413 491 4.31e-14 73.6
Msa0754610 AT1G12860.2 29.448 163 100 5 158 316 268 419 9.57e-14 72.4
Msa0754610 AT1G12860.1 29.448 163 100 5 158 316 268 419 1.20e-13 72.0
Msa0754610 AT4G16430.1 40.476 84 46 1 131 214 298 377 1.63e-13 71.6
Msa0754610 AT5G46760.1 30.263 152 83 4 157 301 415 550 3.49e-13 70.9
Msa0754610 AT4G17880.1 27.485 171 107 4 131 301 394 547 2.13e-12 68.6
Msa0754610 AT2G16910.1 27.811 169 87 4 158 304 315 470 2.33e-12 68.2
Msa0754610 AT3G26744.6 27.108 166 104 5 158 316 308 463 3.83e-12 67.4
Msa0754610 AT3G26744.1 27.108 166 104 5 158 316 308 463 3.94e-12 67.4
Msa0754610 AT3G26744.4 27.108 166 104 5 158 316 308 463 3.94e-12 67.4
Msa0754610 AT3G26744.2 27.108 166 104 5 158 316 308 463 3.94e-12 67.4
Msa0754610 AT5G57150.3 29.189 185 113 5 144 318 41 217 4.63e-12 65.1
Msa0754610 AT5G57150.2 28.495 186 115 5 144 319 41 218 5.63e-12 65.1
Msa0754610 AT5G41315.2 26.144 153 103 3 157 299 449 601 8.21e-12 66.6
Msa0754610 AT5G41315.1 26.144 153 103 3 157 299 441 593 8.54e-12 66.6
Msa0754610 AT5G41315.3 26.144 153 103 3 157 299 446 598 8.81e-12 66.6
Msa0754610 AT4G29930.1 26.923 208 138 8 144 341 39 242 1.93e-11 63.9
Msa0754610 AT5G57150.4 28.962 183 112 5 144 316 41 215 2.61e-11 63.5
Msa0754610 AT5G57150.5 28.649 185 114 5 144 318 40 216 3.21e-11 62.8
Msa0754610 AT3G61950.6 29.932 147 88 2 157 301 128 261 4.76e-11 63.2
Msa0754610 AT5G57150.1 29.947 187 117 5 144 325 40 217 4.81e-11 62.8
Msa0754610 AT3G61950.2 29.932 147 88 2 157 301 128 261 5.93e-11 63.2
Msa0754610 AT3G61950.3 29.932 147 88 2 157 301 179 312 6.65e-11 63.2
Msa0754610 AT1G63650.3 26.174 149 103 3 157 299 405 552 7.22e-11 63.9
Msa0754610 AT1G63650.1 26.174 149 103 3 157 299 405 552 7.22e-11 63.9
Msa0754610 AT1G63650.2 26.174 149 103 3 157 299 405 552 7.22e-11 63.9
Msa0754610 AT3G61950.1 29.932 147 88 2 157 301 179 312 1.00e-10 62.8

Find 53 sgRNAs with CRISPR-Local

Find 171 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATGTGATCTTGAGCATTTC+TGG 0.145443 5_2:+8237212 None:intergenic
TTGCACTTTGAAATTAAAAT+TGG 0.181855 5_2:+8236214 None:intergenic
AGTAGTTGTGCATTGCTATT+TGG 0.235575 5_2:-8236663 Msa0754610:CDS
TTCAACATTGGTTCTAGTTT+TGG 0.266677 5_2:+8237369 None:intergenic
ATGGATAAGGCTTCTGTATT+AGG 0.299166 5_2:-8237014 Msa0754610:CDS
CTCTCTTGAATATTGCGTTT+TGG 0.303171 5_2:+8237255 None:intergenic
TCAGACACCTCATCAAATTC+TGG 0.305371 5_2:-8236861 Msa0754610:CDS
ACTCCTTCCAGACTTGAAAA+AGG 0.315242 5_2:-8237133 Msa0754610:intron
GGGAAATCTTTAACCTCAAA+AGG 0.344535 5_2:-8237303 Msa0754610:CDS
TTGGTCTTAAGTGTCTTTGT+AGG 0.346951 5_2:+8237477 None:intergenic
GACACTCTTGCCTCAACTTC+AGG 0.353101 5_2:+8236783 None:intergenic
CAGATTCTACGTTGTTCCTT+TGG 0.354402 5_2:+8236931 None:intergenic
GACAAGTTGGTTGTGTGATT+TGG 0.403546 5_2:-8237741 Msa0754610:intron
GATGAAGATTCTCTATCTCT+TGG 0.405403 5_2:+8236697 None:intergenic
CAAAGCAAAGAATGTAAGAA+TGG 0.443123 5_2:+8237409 None:intergenic
GATTCAACTTTGAAACCAAA+AGG 0.445350 5_2:-8237342 Msa0754610:CDS
GGAATTGCTCATAGTGTTTG+AGG 0.462284 5_2:+8237527 None:intergenic
GTACCCTATGTTTGAAGGGT+TGG 0.464961 5_2:+8237458 None:intergenic
ACTTCAGGCAGTGACCTACT+TGG 0.469914 5_2:+8236798 None:intergenic
GAAGGGTACCCTATGTTTGA+AGG 0.486283 5_2:+8237453 None:intergenic
AAAGATTGTTGCAGTGACAT+AGG 0.493042 5_2:+8237579 None:intergenic
AAGACCAACCCTTCAAACAT+AGG 0.497958 5_2:-8237462 Msa0754610:CDS
AAGATTGTTGCAGTGACATA+GGG 0.498647 5_2:+8237580 None:intergenic
TCACTGCAACAATCTTTCTC+TGG 0.504710 5_2:-8237573 Msa0754610:CDS
AAAGCAAAGAATGTAAGAAT+GGG 0.507449 5_2:+8237410 None:intergenic
CATTTGGATATAGATGGATA+AGG 0.510043 5_2:-8237027 Msa0754610:intron
GTTGAATCAATGTTCAACAT+TGG 0.511485 5_2:+8237357 None:intergenic
ACCTCATCAAATTCTGGCTA+TGG 0.514888 5_2:-8236855 Msa0754610:CDS
GTTAAATTGCAAGACAGCTA+TGG 0.515196 5_2:+8237814 None:intergenic
ATGAGTGAGTTCAATCACTT+AGG 0.519827 5_2:+8236262 None:intergenic
TTTCTTGAAGCTGTTTCACA+TGG 0.520049 5_2:+8236979 None:intergenic
GAAGTTCAGCCTAAGCGTGC+AGG 0.528653 5_2:-8236322 Msa0754610:CDS
AACTTTGAAACCAAAAGGCA+AGG 0.533663 5_2:-8237337 Msa0754610:CDS
CACTCTTATGTTTCTCACAA+TGG 0.534111 5_2:+8236736 None:intergenic
TAGCTAGCTCCTGCACGCTT+AGG 0.538929 5_2:+8236313 None:intergenic
GGAAATCTTTAACCTCAAAA+GGG 0.543386 5_2:-8237302 Msa0754610:CDS
AACACTATGAGCAATTCCTC+AGG 0.557225 5_2:-8237522 Msa0754610:CDS
TGACATCAAACGATGAGTCA+TGG 0.561998 5_2:-8237763 Msa0754610:CDS
AGACCAACCCTTCAAACATA+GGG 0.575956 5_2:-8237461 Msa0754610:CDS
AAGGGTACCCTATGTTTGAA+GGG 0.581486 5_2:+8237454 None:intergenic
ACGATGAGTCATGGACAAGT+TGG 0.581739 5_2:-8237754 Msa0754610:CDS
ATATCATACCTCAGCAATGA+CGG 0.591116 5_2:+8236620 None:intergenic
TAGGTCACTGCCTGAAGTTG+AGG 0.613765 5_2:-8236793 Msa0754610:CDS
CTGCAACAATCTTTCTCTGG+TGG 0.629704 5_2:-8237570 Msa0754610:CDS
TTGAGGTTGTGTGAGAGCAA+TGG 0.632047 5_2:+8237544 None:intergenic
AAGGAACAACGTAGAATCTG+TGG 0.639673 5_2:-8236928 Msa0754610:CDS
TATTGGAAGAAAAGAACCAA+AGG 0.640211 5_2:-8236947 Msa0754610:CDS
GAGATGTTAACTGCTTTGAG+AGG 0.640656 5_2:-8237500 Msa0754610:CDS
ACCATAGCCAGAATTTGATG+AGG 0.651808 5_2:+8236854 None:intergenic
TGACATAACCGTCATTGCTG+AGG 0.654621 5_2:-8236628 Msa0754610:intron
CTCACACCTCAAAACCAAGT+AGG 0.668534 5_2:-8236812 Msa0754610:CDS
AGATTGTTGCAGTGACATAG+GGG 0.673309 5_2:+8237581 None:intergenic
AAAGCAGTTAACATCTCCTG+AGG 0.687587 5_2:+8237506 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATTAATGATACTAATTAA+TGG - chr5_2:8236993-8237012 Msa0754610:CDS 10.0%
!! AAATTAATGATACTAATTAA+TGG - chr5_2:8236993-8237012 Msa0754610:CDS 10.0%
!!! AAAGAACACTTATTTTAAAA+TGG - chr5_2:8237586-8237605 Msa0754610:CDS 15.0%
!!! GATTTTTTTAACATCAAAAT+AGG - chr5_2:8237626-8237645 Msa0754610:intron 15.0%
!!! AAAGAACACTTATTTTAAAA+TGG - chr5_2:8237586-8237605 Msa0754610:CDS 15.0%
!!! GATTTTTTTAACATCAAAAT+AGG - chr5_2:8237626-8237645 Msa0754610:intron 15.0%
!!! AATTTTGTTTGCACTTTTTT+TGG - chr5_2:8236368-8236387 Msa0754610:intron 20.0%
!!! AATTTGTTTAACAAATCAAG+AGG + chr5_2:8236978-8236997 None:intergenic 20.0%
!! ATTAATCATTTGGATATAGA+TGG - chr5_2:8237022-8237041 Msa0754610:intron 20.0%
!!! CACTTATATTTTTAAAACAG+TGG + chr5_2:8237470-8237489 None:intergenic 20.0%
!!! AACACTTATTTTAAAATGGA+GGG - chr5_2:8237590-8237609 Msa0754610:CDS 20.0%
!!! ATTTGAAAGAATCCAATTTT+AGG - chr5_2:8237829-8237848 Msa0754610:five_prime_UTR 20.0%
!!! AATTTTGTTTGCACTTTTTT+TGG - chr5_2:8236368-8236387 Msa0754610:intron 20.0%
!!! AATTTGTTTAACAAATCAAG+AGG + chr5_2:8236978-8236997 None:intergenic 20.0%
!! ATTAATCATTTGGATATAGA+TGG - chr5_2:8237022-8237041 Msa0754610:intron 20.0%
!!! CACTTATATTTTTAAAACAG+TGG + chr5_2:8237470-8237489 None:intergenic 20.0%
!!! AACACTTATTTTAAAATGGA+GGG - chr5_2:8237590-8237609 Msa0754610:CDS 20.0%
!!! TTGATGATTTTGTAATCTTC+TGG + chr5_2:8236440-8236459 None:intergenic 25.0%
!!! AATCTTTTTTTGGTAAGGAA+GGG + chr5_2:8236622-8236641 None:intergenic 25.0%
! AAAGCAAAGAATGTAAGAAT+GGG + chr5_2:8236648-8236667 None:intergenic 25.0%
! TCCTTAGAAAACCAAAAAAA+GGG - chr5_2:8236776-8236795 Msa0754610:CDS 25.0%
! ATGGTTACTCATTAATCATT+TGG - chr5_2:8237012-8237031 Msa0754610:CDS 25.0%
!!! GAACACTTATTTTAAAATGG+AGG - chr5_2:8237589-8237608 Msa0754610:CDS 25.0%
!!! TTGATGATTTTGTAATCTTC+TGG + chr5_2:8236440-8236459 None:intergenic 25.0%
!!! AATCTTTTTTTGGTAAGGAA+GGG + chr5_2:8236622-8236641 None:intergenic 25.0%
! AAAGCAAAGAATGTAAGAAT+GGG + chr5_2:8236648-8236667 None:intergenic 25.0%
! TCCTTAGAAAACCAAAAAAA+GGG - chr5_2:8236776-8236795 Msa0754610:CDS 25.0%
! ATGGTTACTCATTAATCATT+TGG - chr5_2:8237012-8237031 Msa0754610:CDS 25.0%
!!! GAACACTTATTTTAAAATGG+AGG - chr5_2:8237589-8237608 Msa0754610:CDS 25.0%
AAAGTGCAAACAAAATTGTG+TGG + chr5_2:8236365-8236384 None:intergenic 30.0%
!!! GAATCTTTTTTTGGTAAGGA+AGG + chr5_2:8236623-8236642 None:intergenic 30.0%
!!! GGAAGAATCTTTTTTTGGTA+AGG + chr5_2:8236627-8236646 None:intergenic 30.0%
!!! GAATGGGAAGAATCTTTTTT+TGG + chr5_2:8236632-8236651 None:intergenic 30.0%
CAAAGCAAAGAATGTAAGAA+TGG + chr5_2:8236649-8236668 None:intergenic 30.0%
!!! TTCAACATTGGTTCTAGTTT+TGG + chr5_2:8236689-8236708 None:intergenic 30.0%
GTTGAATCAATGTTCAACAT+TGG + chr5_2:8236701-8236720 None:intergenic 30.0%
!! GATTCAACTTTGAAACCAAA+AGG - chr5_2:8236713-8236732 Msa0754610:CDS 30.0%
! TGATTAAAAACCTTGCCTTT+TGG + chr5_2:8236731-8236750 None:intergenic 30.0%
! AAAGGCAAGGTTTTTAATCA+TGG - chr5_2:8236731-8236750 Msa0754610:CDS 30.0%
! AAGGCAAGGTTTTTAATCAT+GGG - chr5_2:8236732-8236751 Msa0754610:CDS 30.0%
GGAAATCTTTAACCTCAAAA+GGG - chr5_2:8236753-8236772 Msa0754610:CDS 30.0%
GTCCTTAGAAAACCAAAAAA+AGG - chr5_2:8236775-8236794 Msa0754610:CDS 30.0%
!!! TCCCTTTTTTTGGTTTTCTA+AGG + chr5_2:8236780-8236799 None:intergenic 30.0%
!!! AATTGAACCTTTTTCAAGTC+TGG + chr5_2:8236932-8236951 None:intergenic 30.0%
CATTTGGATATAGATGGATA+AGG - chr5_2:8237028-8237047 Msa0754610:intron 30.0%
TCAAGAAAAAGTGAAGCTAT+TGG - chr5_2:8237091-8237110 Msa0754610:intron 30.0%
TATTGGAAGAAAAGAACCAA+AGG - chr5_2:8237108-8237127 Msa0754610:intron 30.0%
!! TACTTAGTTTGTCTATCTTC+TGG - chr5_2:8237691-8237710 Msa0754610:intron 30.0%
AAAGTGCAAACAAAATTGTG+TGG + chr5_2:8236365-8236384 None:intergenic 30.0%
!!! GAATCTTTTTTTGGTAAGGA+AGG + chr5_2:8236623-8236642 None:intergenic 30.0%
!!! GGAAGAATCTTTTTTTGGTA+AGG + chr5_2:8236627-8236646 None:intergenic 30.0%
!!! GAATGGGAAGAATCTTTTTT+TGG + chr5_2:8236632-8236651 None:intergenic 30.0%
CAAAGCAAAGAATGTAAGAA+TGG + chr5_2:8236649-8236668 None:intergenic 30.0%
!!! TTCAACATTGGTTCTAGTTT+TGG + chr5_2:8236689-8236708 None:intergenic 30.0%
GTTGAATCAATGTTCAACAT+TGG + chr5_2:8236701-8236720 None:intergenic 30.0%
!! GATTCAACTTTGAAACCAAA+AGG - chr5_2:8236713-8236732 Msa0754610:CDS 30.0%
! TGATTAAAAACCTTGCCTTT+TGG + chr5_2:8236731-8236750 None:intergenic 30.0%
! AAAGGCAAGGTTTTTAATCA+TGG - chr5_2:8236731-8236750 Msa0754610:CDS 30.0%
! AAGGCAAGGTTTTTAATCAT+GGG - chr5_2:8236732-8236751 Msa0754610:CDS 30.0%
GGAAATCTTTAACCTCAAAA+GGG - chr5_2:8236753-8236772 Msa0754610:CDS 30.0%
GTCCTTAGAAAACCAAAAAA+AGG - chr5_2:8236775-8236794 Msa0754610:CDS 30.0%
!!! TCCCTTTTTTTGGTTTTCTA+AGG + chr5_2:8236780-8236799 None:intergenic 30.0%
!!! AATTGAACCTTTTTCAAGTC+TGG + chr5_2:8236932-8236951 None:intergenic 30.0%
CATTTGGATATAGATGGATA+AGG - chr5_2:8237028-8237047 Msa0754610:intron 30.0%
TCAAGAAAAAGTGAAGCTAT+TGG - chr5_2:8237091-8237110 Msa0754610:intron 30.0%
TATTGGAAGAAAAGAACCAA+AGG - chr5_2:8237108-8237127 Msa0754610:intron 30.0%
!! TACTTAGTTTGTCTATCTTC+TGG - chr5_2:8237691-8237710 Msa0754610:intron 30.0%
GTTAAATTGCAAGACAGCTA+TGG + chr5_2:8236244-8236263 None:intergenic 35.0%
AAGATTGTTGCAGTGACATA+GGG + chr5_2:8236478-8236497 None:intergenic 35.0%
AAAGATTGTTGCAGTGACAT+AGG + chr5_2:8236479-8236498 None:intergenic 35.0%
!! TTGGTCTTAAGTGTCTTTGT+AGG + chr5_2:8236581-8236600 None:intergenic 35.0%
!! AACTTTGAAACCAAAAGGCA+AGG - chr5_2:8236718-8236737 Msa0754610:CDS 35.0%
GGGAAATCTTTAACCTCAAA+AGG - chr5_2:8236752-8236771 Msa0754610:CDS 35.0%
! CTCTCTTGAATATTGCGTTT+TGG + chr5_2:8236803-8236822 None:intergenic 35.0%
TATGTGATCTTGAGCATTTC+TGG + chr5_2:8236846-8236865 None:intergenic 35.0%
ATGGATAAGGCTTCTGTATT+AGG - chr5_2:8237041-8237060 Msa0754610:intron 35.0%
! TTTCTTGAAGCTGTTTCACA+TGG + chr5_2:8237079-8237098 None:intergenic 35.0%
CACTCTTATGTTTCTCACAA+TGG + chr5_2:8237322-8237341 None:intergenic 35.0%
GATGAAGATTCTCTATCTCT+TGG + chr5_2:8237361-8237380 None:intergenic 35.0%
! AGTAGTTGTGCATTGCTATT+TGG - chr5_2:8237392-8237411 Msa0754610:CDS 35.0%
ATATCATACCTCAGCAATGA+CGG + chr5_2:8237438-8237457 None:intergenic 35.0%
ATGAGTGAGTTCAATCACTT+AGG + chr5_2:8237796-8237815 None:intergenic 35.0%
GTTAAATTGCAAGACAGCTA+TGG + chr5_2:8236244-8236263 None:intergenic 35.0%
AAGATTGTTGCAGTGACATA+GGG + chr5_2:8236478-8236497 None:intergenic 35.0%
AAAGATTGTTGCAGTGACAT+AGG + chr5_2:8236479-8236498 None:intergenic 35.0%
!! TTGGTCTTAAGTGTCTTTGT+AGG + chr5_2:8236581-8236600 None:intergenic 35.0%
!! AACTTTGAAACCAAAAGGCA+AGG - chr5_2:8236718-8236737 Msa0754610:CDS 35.0%
GGGAAATCTTTAACCTCAAA+AGG - chr5_2:8236752-8236771 Msa0754610:CDS 35.0%
! CTCTCTTGAATATTGCGTTT+TGG + chr5_2:8236803-8236822 None:intergenic 35.0%
TATGTGATCTTGAGCATTTC+TGG + chr5_2:8236846-8236865 None:intergenic 35.0%
ATGGATAAGGCTTCTGTATT+AGG - chr5_2:8237041-8237060 Msa0754610:intron 35.0%
! TTTCTTGAAGCTGTTTCACA+TGG + chr5_2:8237079-8237098 None:intergenic 35.0%
CACTCTTATGTTTCTCACAA+TGG + chr5_2:8237322-8237341 None:intergenic 35.0%
GATGAAGATTCTCTATCTCT+TGG + chr5_2:8237361-8237380 None:intergenic 35.0%
! AGTAGTTGTGCATTGCTATT+TGG - chr5_2:8237392-8237411 Msa0754610:CDS 35.0%
ATATCATACCTCAGCAATGA+CGG + chr5_2:8237438-8237457 None:intergenic 35.0%
ATGAGTGAGTTCAATCACTT+AGG + chr5_2:8237796-8237815 None:intergenic 35.0%
TGACATCAAACGATGAGTCA+TGG - chr5_2:8236292-8236311 Msa0754610:CDS 40.0%
!! GACAAGTTGGTTGTGTGATT+TGG - chr5_2:8236314-8236333 Msa0754610:CDS 40.0%
AAACTCTTGTGACTTTCCAC+AGG - chr5_2:8236412-8236431 Msa0754610:intron 40.0%
!! TTGTAATCTTCTGGTTCCTG+TGG + chr5_2:8236431-8236450 None:intergenic 40.0%
AGATTGTTGCAGTGACATAG+GGG + chr5_2:8236477-8236496 None:intergenic 40.0%
TCACTGCAACAATCTTTCTC+TGG - chr5_2:8236482-8236501 Msa0754610:intron 40.0%
GGAATTGCTCATAGTGTTTG+AGG + chr5_2:8236531-8236550 None:intergenic 40.0%
AACACTATGAGCAATTCCTC+AGG - chr5_2:8236533-8236552 Msa0754610:intron 40.0%
AAAGCAGTTAACATCTCCTG+AGG + chr5_2:8236552-8236571 None:intergenic 40.0%
! GAGATGTTAACTGCTTTGAG+AGG - chr5_2:8236555-8236574 Msa0754610:intron 40.0%
AAGACCAACCCTTCAAACAT+AGG - chr5_2:8236593-8236612 Msa0754610:intron 40.0%
AGACCAACCCTTCAAACATA+GGG - chr5_2:8236594-8236613 Msa0754610:intron 40.0%
!! AAGGGTACCCTATGTTTGAA+GGG + chr5_2:8236604-8236623 None:intergenic 40.0%
!! GTTTTCTAAGGACCCTTTTG+AGG + chr5_2:8236768-8236787 None:intergenic 40.0%
!! TGCGTTTTGGTCCCTTTTTT+TGG + chr5_2:8236790-8236809 None:intergenic 40.0%
ACTCCTTCCAGACTTGAAAA+AGG - chr5_2:8236922-8236941 Msa0754610:CDS 40.0%
!!! GAACCTTTTTCAAGTCTGGA+AGG + chr5_2:8236928-8236947 None:intergenic 40.0%
CAGATTCTACGTTGTTCCTT+TGG + chr5_2:8237127-8237146 None:intergenic 40.0%
AAGGAACAACGTAGAATCTG+TGG - chr5_2:8237127-8237146 Msa0754610:intron 40.0%
TCAGACACCTCATCAAATTC+TGG - chr5_2:8237194-8237213 Msa0754610:CDS 40.0%
! ACCTCATCAAATTCTGGCTA+TGG - chr5_2:8237200-8237219 Msa0754610:CDS 40.0%
ACCATAGCCAGAATTTGATG+AGG + chr5_2:8237204-8237223 None:intergenic 40.0%
! GACGGTTATGTCAAGTTTTG+TGG + chr5_2:8237420-8237439 None:intergenic 40.0%
TCTTCTGGTACAAATGCAGA+TGG - chr5_2:8237706-8237725 Msa0754610:intron 40.0%
TGACATCAAACGATGAGTCA+TGG - chr5_2:8236292-8236311 Msa0754610:CDS 40.0%
!! GACAAGTTGGTTGTGTGATT+TGG - chr5_2:8236314-8236333 Msa0754610:CDS 40.0%
AAACTCTTGTGACTTTCCAC+AGG - chr5_2:8236412-8236431 Msa0754610:intron 40.0%
!! TTGTAATCTTCTGGTTCCTG+TGG + chr5_2:8236431-8236450 None:intergenic 40.0%
AGATTGTTGCAGTGACATAG+GGG + chr5_2:8236477-8236496 None:intergenic 40.0%
TCACTGCAACAATCTTTCTC+TGG - chr5_2:8236482-8236501 Msa0754610:intron 40.0%
GGAATTGCTCATAGTGTTTG+AGG + chr5_2:8236531-8236550 None:intergenic 40.0%
AACACTATGAGCAATTCCTC+AGG - chr5_2:8236533-8236552 Msa0754610:intron 40.0%
AAAGCAGTTAACATCTCCTG+AGG + chr5_2:8236552-8236571 None:intergenic 40.0%
! GAGATGTTAACTGCTTTGAG+AGG - chr5_2:8236555-8236574 Msa0754610:intron 40.0%
AAGACCAACCCTTCAAACAT+AGG - chr5_2:8236593-8236612 Msa0754610:intron 40.0%
AGACCAACCCTTCAAACATA+GGG - chr5_2:8236594-8236613 Msa0754610:intron 40.0%
!! AAGGGTACCCTATGTTTGAA+GGG + chr5_2:8236604-8236623 None:intergenic 40.0%
!! GTTTTCTAAGGACCCTTTTG+AGG + chr5_2:8236768-8236787 None:intergenic 40.0%
!! TGCGTTTTGGTCCCTTTTTT+TGG + chr5_2:8236790-8236809 None:intergenic 40.0%
ACTCCTTCCAGACTTGAAAA+AGG - chr5_2:8236922-8236941 Msa0754610:CDS 40.0%
!!! GAACCTTTTTCAAGTCTGGA+AGG + chr5_2:8236928-8236947 None:intergenic 40.0%
CAGATTCTACGTTGTTCCTT+TGG + chr5_2:8237127-8237146 None:intergenic 40.0%
AAGGAACAACGTAGAATCTG+TGG - chr5_2:8237127-8237146 Msa0754610:intron 40.0%
TCAGACACCTCATCAAATTC+TGG - chr5_2:8237194-8237213 Msa0754610:CDS 40.0%
! ACCTCATCAAATTCTGGCTA+TGG - chr5_2:8237200-8237219 Msa0754610:CDS 40.0%
ACCATAGCCAGAATTTGATG+AGG + chr5_2:8237204-8237223 None:intergenic 40.0%
! GACGGTTATGTCAAGTTTTG+TGG + chr5_2:8237420-8237439 None:intergenic 40.0%
TCTTCTGGTACAAATGCAGA+TGG - chr5_2:8237706-8237725 Msa0754610:intron 40.0%
ACGATGAGTCATGGACAAGT+TGG - chr5_2:8236301-8236320 Msa0754610:CDS 45.0%
CTGCAACAATCTTTCTCTGG+TGG - chr5_2:8236485-8236504 Msa0754610:intron 45.0%
TTGAGGTTGTGTGAGAGCAA+TGG + chr5_2:8236514-8236533 None:intergenic 45.0%
GTACCCTATGTTTGAAGGGT+TGG + chr5_2:8236600-8236619 None:intergenic 45.0%
!! GAAGGGTACCCTATGTTTGA+AGG + chr5_2:8236605-8236624 None:intergenic 45.0%
CTCACACCTCAAAACCAAGT+AGG - chr5_2:8237243-8237262 Msa0754610:CDS 45.0%
!!! CAGTGACCTACTTGGTTTTG+AGG + chr5_2:8237252-8237271 None:intergenic 45.0%
TGACATAACCGTCATTGCTG+AGG - chr5_2:8237427-8237446 Msa0754610:CDS 45.0%
ACGATGAGTCATGGACAAGT+TGG - chr5_2:8236301-8236320 Msa0754610:CDS 45.0%
CTGCAACAATCTTTCTCTGG+TGG - chr5_2:8236485-8236504 Msa0754610:intron 45.0%
TTGAGGTTGTGTGAGAGCAA+TGG + chr5_2:8236514-8236533 None:intergenic 45.0%
GTACCCTATGTTTGAAGGGT+TGG + chr5_2:8236600-8236619 None:intergenic 45.0%
!! GAAGGGTACCCTATGTTTGA+AGG + chr5_2:8236605-8236624 None:intergenic 45.0%
CTCACACCTCAAAACCAAGT+AGG - chr5_2:8237243-8237262 Msa0754610:CDS 45.0%
!!! CAGTGACCTACTTGGTTTTG+AGG + chr5_2:8237252-8237271 None:intergenic 45.0%
TGACATAACCGTCATTGCTG+AGG - chr5_2:8237427-8237446 Msa0754610:CDS 45.0%
ACTTCAGGCAGTGACCTACT+TGG + chr5_2:8237260-8237279 None:intergenic 50.0%
TAGGTCACTGCCTGAAGTTG+AGG - chr5_2:8237262-8237281 Msa0754610:CDS 50.0%
GACACTCTTGCCTCAACTTC+AGG + chr5_2:8237275-8237294 None:intergenic 50.0%
ACTTCAGGCAGTGACCTACT+TGG + chr5_2:8237260-8237279 None:intergenic 50.0%
TAGGTCACTGCCTGAAGTTG+AGG - chr5_2:8237262-8237281 Msa0754610:CDS 50.0%
GACACTCTTGCCTCAACTTC+AGG + chr5_2:8237275-8237294 None:intergenic 50.0%
GAAGTTCAGCCTAAGCGTGC+AGG - chr5_2:8237733-8237752 Msa0754610:intron 55.0%
TAGCTAGCTCCTGCACGCTT+AGG + chr5_2:8237745-8237764 None:intergenic 55.0%
GAAGTTCAGCCTAAGCGTGC+AGG - chr5_2:8237733-8237752 Msa0754610:intron 55.0%
TAGCTAGCTCCTGCACGCTT+AGG + chr5_2:8237745-8237764 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 8236229 8237848 8236229 ID=Msa0754610;Name=Msa0754610
chr5_2 mRNA 8236229 8237848 8236229 ID=Msa0754610-mRNA-1;Parent=Msa0754610;Name=Msa0754610-mRNA-1;_AED=0.01;_eAED=0.01;_QI=62|1|1|1|1|1|4|58|342
chr5_2 exon 8236229 8236352 8236229 ID=Msa0754610-mRNA-1:exon:3789;Parent=Msa0754610-mRNA-1
chr5_2 exon 8236629 8237036 8236629 ID=Msa0754610-mRNA-1:exon:3788;Parent=Msa0754610-mRNA-1
chr5_2 exon 8237134 8237643 8237134 ID=Msa0754610-mRNA-1:exon:3787;Parent=Msa0754610-mRNA-1
chr5_2 exon 8237742 8237848 8237742 ID=Msa0754610-mRNA-1:exon:3786;Parent=Msa0754610-mRNA-1
chr5_2 five_prime_UTR 8237787 8237848 8237787 ID=Msa0754610-mRNA-1:five_prime_utr;Parent=Msa0754610-mRNA-1
chr5_2 CDS 8237742 8237786 8237742 ID=Msa0754610-mRNA-1:cds;Parent=Msa0754610-mRNA-1
chr5_2 CDS 8237134 8237643 8237134 ID=Msa0754610-mRNA-1:cds;Parent=Msa0754610-mRNA-1
chr5_2 CDS 8236629 8237036 8236629 ID=Msa0754610-mRNA-1:cds;Parent=Msa0754610-mRNA-1
chr5_2 CDS 8236287 8236352 8236287 ID=Msa0754610-mRNA-1:cds;Parent=Msa0754610-mRNA-1
chr5_2 three_prime_UTR 8236229 8236286 8236229 ID=Msa0754610-mRNA-1:three_prime_utr;Parent=Msa0754610-mRNA-1
Gene Sequence

>Msa0754610

ATGACATCAAACGATGAGTCATGGACAAGTTGGTTGTGTGATTTGGAACCAGAAGATTACAAAATCATCAATGACATTAACATAGCCCCTATGTCACTGCAACAATCTTTCTCTGGTGGTAGCCATTGCTCTCACACAACCTCAAACACTATGAGCAATTCCTCAGGAGATGTTAACTGCTTTGAGAGGCCTACAAAGACACTTAAGACCAACCCTTCAAACATAGGGTACCCTTCCTTACCAAAAAAAGATTCTTCCCATTCTTACATTCTTTGCTTTGACAATGAGAATCAAGAACCAAAACTAGAACCAATGTTGAACATTGATTCAACTTTGAAACCAAAAGGCAAGGTTTTTAATCATGGGAAATCTTTAACCTCAAAAGGGTCCTTAGAAAACCAAAAAAAGGGACCAAAACGCAATATTCAAGAGAGCAAGAAGACTGATTCAGCTGCCAGAAATGCTCAAGATCACATACTTGCTGAGAGAAAGAGAAGAGAAAAAATTAGTCAAAAGTTCATAGCTCTTTCAGCACTCCTTCCAGACTTGAAAAAGATGGATAAGGCTTCTGTATTAGGTGATGCTATAAACCATGTGAAACAGCTTCAAGAAAAAGTGAAGCTATTGGAAGAAAAGAACCAAAGGAACAACGTAGAATCTGTGGTATACGTTGAGAAGACAAAGTCATGTTCTTCAGATGAAGATGTTTCAGACACCTCATCAAATTCTGGCTATGGTAATTGTTGTCACACTCACACTCACACCTCAAAACCAAGTAGGTCACTGCCTGAAGTTGAGGCAAGAGTGTCAGAGAAAAACGTGCTGATTCGTGTCCATTGTGAGAAACATAAGAGTGTATTGATGAACATAATCCAAGAGATAGAGAATCTTCATCTATCAGTTACTAGTAGTTGTGCATTGCTATTTGGAACCACAAAACTTGACATAACCGTCATTGCTGAGATGGATGAGAAGTTCAGCCTAAGCGTGCAGGAGCTAGCTAGAAAACTTCAGATTGTACTATTGTAA

Protein sequence

>Msa0754610

MTSNDESWTSWLCDLEPEDYKIINDINIAPMSLQQSFSGGSHCSHTTSNTMSNSSGDVNCFERPTKTLKTNPSNIGYPSLPKKDSSHSYILCFDNENQEPKLEPMLNIDSTLKPKGKVFNHGKSLTSKGSLENQKKGPKRNIQESKKTDSAARNAQDHILAERKRREKISQKFIALSALLPDLKKMDKASVLGDAINHVKQLQEKVKLLEEKNQRNNVESVVYVEKTKSCSSDEDVSDTSSNSGYGNCCHTHTHTSKPSRSLPEVEARVSEKNVLIRVHCEKHKSVLMNIIQEIENLHLSVTSSCALLFGTTKLDITVIAEMDEKFSLSVQELARKLQIVLL*