Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0754610 | sp|Q9T072|BH025_ARATH | 38.040 | 347 | 173 | 14 | 9 | 341 | 6 | 324 | 3.61e-49 | 170 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0754610 | G7K131 | 87.393 | 349 | 22 | 5 | 1 | 342 | 1 | 334 | 0.0 | 594 |
Gene ID | Type | Classification |
---|---|---|
Msa0754610 | TF | bHLH |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0754610 | Msa0797430 | 0.980535 | 1.916059e-150 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0754610 | MtrunA17_Chr5g0400661 | 87.393 | 349 | 22 | 5 | 1 | 342 | 1 | 334 | 0.0 | 594 |
Msa0754610 | MtrunA17_Chr4g0054571 | 46.893 | 354 | 128 | 11 | 1 | 342 | 24 | 329 | 1.08e-81 | 251 |
Msa0754610 | MtrunA17_Chr2g0280161 | 41.695 | 295 | 132 | 9 | 62 | 338 | 74 | 346 | 4.00e-57 | 189 |
Msa0754610 | MtrunA17_Chr4g0049331 | 43.774 | 265 | 107 | 8 | 86 | 341 | 75 | 306 | 1.01e-54 | 181 |
Msa0754610 | MtrunA17_Chr2g0333621 | 40.741 | 270 | 128 | 8 | 75 | 342 | 72 | 311 | 1.69e-52 | 176 |
Msa0754610 | MtrunA17_Chr5g0400621 | 40.484 | 289 | 125 | 7 | 61 | 342 | 81 | 329 | 5.54e-50 | 169 |
Msa0754610 | MtrunA17_Chr4g0054581 | 35.657 | 373 | 193 | 12 | 6 | 342 | 13 | 374 | 5.85e-49 | 168 |
Msa0754610 | MtrunA17_Chr4g0054561 | 38.947 | 285 | 117 | 11 | 64 | 341 | 90 | 324 | 1.29e-48 | 166 |
Msa0754610 | MtrunA17_Chr4g0054551 | 39.362 | 282 | 120 | 9 | 64 | 341 | 90 | 324 | 1.59e-47 | 163 |
Msa0754610 | MtrunA17_Chr8g0336681 | 37.262 | 263 | 142 | 7 | 78 | 338 | 90 | 331 | 4.88e-47 | 162 |
Msa0754610 | MtrunA17_Chr4g0002801 | 38.346 | 266 | 133 | 5 | 80 | 342 | 93 | 330 | 4.41e-46 | 159 |
Msa0754610 | MtrunA17_Chr2g0333641 | 40.392 | 255 | 126 | 7 | 87 | 341 | 78 | 306 | 4.85e-46 | 159 |
Msa0754610 | MtrunA17_Chr4g0002781 | 38.060 | 268 | 135 | 7 | 80 | 342 | 108 | 349 | 5.38e-45 | 157 |
Msa0754610 | MtrunA17_Chr2g0307131 | 43.077 | 195 | 96 | 2 | 145 | 338 | 167 | 347 | 6.37e-44 | 154 |
Msa0754610 | MtrunA17_Chr6g0468491 | 35.144 | 313 | 152 | 11 | 34 | 339 | 38 | 306 | 2.47e-43 | 152 |
Msa0754610 | MtrunA17_Chr5g0400671 | 35.314 | 303 | 148 | 10 | 59 | 342 | 50 | 323 | 1.11e-42 | 150 |
Msa0754610 | MtrunA17_Chr2g0307141 | 42.781 | 187 | 94 | 2 | 152 | 338 | 178 | 351 | 2.23e-42 | 150 |
Msa0754610 | MtrunA17_Chr5g0400641 | 47.337 | 169 | 76 | 2 | 160 | 328 | 1 | 156 | 2.31e-42 | 144 |
Msa0754610 | MtrunA17_Chr4g0054621 | 39.631 | 217 | 105 | 4 | 130 | 342 | 143 | 337 | 9.82e-41 | 145 |
Msa0754610 | MtrunA17_Chr4g0033291 | 40.092 | 217 | 109 | 4 | 126 | 342 | 129 | 324 | 3.73e-40 | 144 |
Msa0754610 | MtrunA17_Chr7g0225901 | 37.500 | 224 | 121 | 5 | 102 | 323 | 35 | 241 | 2.00e-38 | 137 |
Msa0754610 | MtrunA17_Chr4g0033391 | 38.537 | 205 | 107 | 4 | 141 | 342 | 128 | 316 | 2.41e-38 | 139 |
Msa0754610 | MtrunA17_Chr2g0333611 | 40.526 | 190 | 92 | 4 | 156 | 342 | 44 | 215 | 5.20e-38 | 135 |
Msa0754610 | MtrunA17_Chr7g0249811 | 35.135 | 259 | 122 | 5 | 85 | 342 | 115 | 328 | 2.83e-37 | 136 |
Msa0754610 | MtrunA17_Chr4g0033281 | 32.493 | 357 | 172 | 12 | 7 | 342 | 13 | 321 | 2.61e-35 | 131 |
Msa0754610 | MtrunA17_Chr2g0333541 | 39.459 | 185 | 99 | 3 | 157 | 340 | 94 | 266 | 1.22e-32 | 122 |
Msa0754610 | MtrunA17_Chr6g0468461 | 30.423 | 355 | 162 | 12 | 2 | 322 | 8 | 311 | 2.29e-32 | 124 |
Msa0754610 | MtrunA17_Chr7g0233441 | 37.736 | 159 | 76 | 2 | 183 | 341 | 60 | 195 | 1.01e-25 | 102 |
Msa0754610 | MtrunA17_Chr4g0002831 | 36.571 | 175 | 86 | 5 | 168 | 341 | 53 | 203 | 1.94e-24 | 99.0 |
Msa0754610 | MtrunA17_Chr4g0002851 | 34.483 | 174 | 82 | 3 | 168 | 341 | 54 | 195 | 3.85e-24 | 97.8 |
Msa0754610 | MtrunA17_Chr7g0275821 | 32.000 | 150 | 77 | 3 | 157 | 304 | 252 | 378 | 1.85e-17 | 82.8 |
Msa0754610 | MtrunA17_Chr7g0260841 | 58.065 | 62 | 25 | 1 | 157 | 217 | 355 | 416 | 2.58e-16 | 79.7 |
Msa0754610 | MtrunA17_Chr1g0185621 | 30.065 | 153 | 86 | 3 | 157 | 301 | 475 | 614 | 3.67e-15 | 76.6 |
Msa0754610 | MtrunA17_Chr7g0273081 | 24.658 | 219 | 153 | 4 | 130 | 341 | 90 | 303 | 4.28e-14 | 72.0 |
Msa0754610 | MtrunA17_Chr8g0366751 | 45.833 | 72 | 39 | 0 | 139 | 210 | 444 | 515 | 9.37e-14 | 72.4 |
Msa0754610 | MtrunA17_Chr8g0346161 | 28.409 | 176 | 106 | 6 | 123 | 295 | 262 | 420 | 1.34e-13 | 71.6 |
Msa0754610 | MtrunA17_Chr3g0131691 | 29.379 | 177 | 112 | 5 | 143 | 316 | 288 | 454 | 1.54e-13 | 71.2 |
Msa0754610 | MtrunA17_Chr5g0411341 | 27.094 | 203 | 127 | 5 | 123 | 314 | 463 | 655 | 4.56e-13 | 70.1 |
Msa0754610 | MtrunA17_Chr8g0386921 | 22.705 | 207 | 128 | 3 | 117 | 303 | 371 | 565 | 6.90e-12 | 66.6 |
Msa0754610 | MtrunA17_Chr1g0211081 | 27.957 | 186 | 114 | 6 | 150 | 315 | 310 | 495 | 9.71e-12 | 65.9 |
Msa0754610 | MtrunA17_Chr7g0270871 | 44.118 | 68 | 38 | 0 | 142 | 209 | 197 | 264 | 1.12e-11 | 65.5 |
Msa0754610 | MtrunA17_Chr8g0346151 | 35.366 | 82 | 50 | 1 | 134 | 215 | 259 | 337 | 1.97e-11 | 64.7 |
Msa0754610 | MtrunA17_Chr4g0028071 | 27.972 | 143 | 85 | 5 | 159 | 298 | 151 | 278 | 2.04e-11 | 64.3 |
Msa0754610 | MtrunA17_Chr8g0365711 | 23.280 | 189 | 124 | 3 | 132 | 319 | 230 | 398 | 2.21e-11 | 64.7 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0754610 | AT4G37850.2 | 38.040 | 347 | 173 | 14 | 9 | 341 | 6 | 324 | 3.67e-50 | 170 |
Msa0754610 | AT4G37850.1 | 38.040 | 347 | 173 | 14 | 9 | 341 | 6 | 324 | 3.67e-50 | 170 |
Msa0754610 | AT2G22760.1 | 44.737 | 190 | 92 | 4 | 155 | 342 | 117 | 295 | 4.41e-46 | 159 |
Msa0754610 | AT2G22750.2 | 47.291 | 203 | 95 | 4 | 142 | 341 | 108 | 301 | 3.17e-44 | 154 |
Msa0754610 | AT2G22750.5 | 38.596 | 342 | 179 | 9 | 9 | 341 | 6 | 325 | 6.66e-44 | 154 |
Msa0754610 | AT2G22750.3 | 38.596 | 342 | 179 | 9 | 9 | 341 | 10 | 329 | 6.80e-44 | 154 |
Msa0754610 | AT2G22750.1 | 47.291 | 203 | 94 | 5 | 142 | 341 | 108 | 300 | 9.01e-43 | 150 |
Msa0754610 | AT2G22750.4 | 38.596 | 342 | 178 | 10 | 9 | 341 | 10 | 328 | 2.08e-42 | 150 |
Msa0754610 | AT2G22770.1 | 42.553 | 188 | 106 | 1 | 156 | 341 | 131 | 318 | 1.29e-40 | 145 |
Msa0754610 | AT2G22760.2 | 45.562 | 169 | 80 | 3 | 155 | 322 | 117 | 274 | 2.19e-40 | 144 |
Msa0754610 | AT2G46510.1 | 47.297 | 74 | 39 | 0 | 139 | 212 | 377 | 450 | 1.81e-16 | 80.9 |
Msa0754610 | AT1G32640.1 | 30.500 | 200 | 114 | 6 | 139 | 328 | 434 | 618 | 4.16e-16 | 79.7 |
Msa0754610 | AT4G09820.1 | 30.464 | 151 | 72 | 2 | 153 | 303 | 359 | 476 | 3.19e-14 | 73.9 |
Msa0754610 | AT1G01260.1 | 39.241 | 79 | 48 | 0 | 137 | 215 | 413 | 491 | 4.31e-14 | 73.6 |
Msa0754610 | AT1G01260.2 | 39.241 | 79 | 48 | 0 | 137 | 215 | 413 | 491 | 4.31e-14 | 73.6 |
Msa0754610 | AT1G01260.3 | 39.241 | 79 | 48 | 0 | 137 | 215 | 413 | 491 | 4.31e-14 | 73.6 |
Msa0754610 | AT1G12860.2 | 29.448 | 163 | 100 | 5 | 158 | 316 | 268 | 419 | 9.57e-14 | 72.4 |
Msa0754610 | AT1G12860.1 | 29.448 | 163 | 100 | 5 | 158 | 316 | 268 | 419 | 1.20e-13 | 72.0 |
Msa0754610 | AT4G16430.1 | 40.476 | 84 | 46 | 1 | 131 | 214 | 298 | 377 | 1.63e-13 | 71.6 |
Msa0754610 | AT5G46760.1 | 30.263 | 152 | 83 | 4 | 157 | 301 | 415 | 550 | 3.49e-13 | 70.9 |
Msa0754610 | AT4G17880.1 | 27.485 | 171 | 107 | 4 | 131 | 301 | 394 | 547 | 2.13e-12 | 68.6 |
Msa0754610 | AT2G16910.1 | 27.811 | 169 | 87 | 4 | 158 | 304 | 315 | 470 | 2.33e-12 | 68.2 |
Msa0754610 | AT3G26744.6 | 27.108 | 166 | 104 | 5 | 158 | 316 | 308 | 463 | 3.83e-12 | 67.4 |
Msa0754610 | AT3G26744.1 | 27.108 | 166 | 104 | 5 | 158 | 316 | 308 | 463 | 3.94e-12 | 67.4 |
Msa0754610 | AT3G26744.4 | 27.108 | 166 | 104 | 5 | 158 | 316 | 308 | 463 | 3.94e-12 | 67.4 |
Msa0754610 | AT3G26744.2 | 27.108 | 166 | 104 | 5 | 158 | 316 | 308 | 463 | 3.94e-12 | 67.4 |
Msa0754610 | AT5G57150.3 | 29.189 | 185 | 113 | 5 | 144 | 318 | 41 | 217 | 4.63e-12 | 65.1 |
Msa0754610 | AT5G57150.2 | 28.495 | 186 | 115 | 5 | 144 | 319 | 41 | 218 | 5.63e-12 | 65.1 |
Msa0754610 | AT5G41315.2 | 26.144 | 153 | 103 | 3 | 157 | 299 | 449 | 601 | 8.21e-12 | 66.6 |
Msa0754610 | AT5G41315.1 | 26.144 | 153 | 103 | 3 | 157 | 299 | 441 | 593 | 8.54e-12 | 66.6 |
Msa0754610 | AT5G41315.3 | 26.144 | 153 | 103 | 3 | 157 | 299 | 446 | 598 | 8.81e-12 | 66.6 |
Msa0754610 | AT4G29930.1 | 26.923 | 208 | 138 | 8 | 144 | 341 | 39 | 242 | 1.93e-11 | 63.9 |
Msa0754610 | AT5G57150.4 | 28.962 | 183 | 112 | 5 | 144 | 316 | 41 | 215 | 2.61e-11 | 63.5 |
Msa0754610 | AT5G57150.5 | 28.649 | 185 | 114 | 5 | 144 | 318 | 40 | 216 | 3.21e-11 | 62.8 |
Msa0754610 | AT3G61950.6 | 29.932 | 147 | 88 | 2 | 157 | 301 | 128 | 261 | 4.76e-11 | 63.2 |
Msa0754610 | AT5G57150.1 | 29.947 | 187 | 117 | 5 | 144 | 325 | 40 | 217 | 4.81e-11 | 62.8 |
Msa0754610 | AT3G61950.2 | 29.932 | 147 | 88 | 2 | 157 | 301 | 128 | 261 | 5.93e-11 | 63.2 |
Msa0754610 | AT3G61950.3 | 29.932 | 147 | 88 | 2 | 157 | 301 | 179 | 312 | 6.65e-11 | 63.2 |
Msa0754610 | AT1G63650.3 | 26.174 | 149 | 103 | 3 | 157 | 299 | 405 | 552 | 7.22e-11 | 63.9 |
Msa0754610 | AT1G63650.1 | 26.174 | 149 | 103 | 3 | 157 | 299 | 405 | 552 | 7.22e-11 | 63.9 |
Msa0754610 | AT1G63650.2 | 26.174 | 149 | 103 | 3 | 157 | 299 | 405 | 552 | 7.22e-11 | 63.9 |
Msa0754610 | AT3G61950.1 | 29.932 | 147 | 88 | 2 | 157 | 301 | 179 | 312 | 1.00e-10 | 62.8 |
Find 53 sgRNAs with CRISPR-Local
Find 171 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TATGTGATCTTGAGCATTTC+TGG | 0.145443 | 5_2:+8237212 | None:intergenic |
TTGCACTTTGAAATTAAAAT+TGG | 0.181855 | 5_2:+8236214 | None:intergenic |
AGTAGTTGTGCATTGCTATT+TGG | 0.235575 | 5_2:-8236663 | Msa0754610:CDS |
TTCAACATTGGTTCTAGTTT+TGG | 0.266677 | 5_2:+8237369 | None:intergenic |
ATGGATAAGGCTTCTGTATT+AGG | 0.299166 | 5_2:-8237014 | Msa0754610:CDS |
CTCTCTTGAATATTGCGTTT+TGG | 0.303171 | 5_2:+8237255 | None:intergenic |
TCAGACACCTCATCAAATTC+TGG | 0.305371 | 5_2:-8236861 | Msa0754610:CDS |
ACTCCTTCCAGACTTGAAAA+AGG | 0.315242 | 5_2:-8237133 | Msa0754610:intron |
GGGAAATCTTTAACCTCAAA+AGG | 0.344535 | 5_2:-8237303 | Msa0754610:CDS |
TTGGTCTTAAGTGTCTTTGT+AGG | 0.346951 | 5_2:+8237477 | None:intergenic |
GACACTCTTGCCTCAACTTC+AGG | 0.353101 | 5_2:+8236783 | None:intergenic |
CAGATTCTACGTTGTTCCTT+TGG | 0.354402 | 5_2:+8236931 | None:intergenic |
GACAAGTTGGTTGTGTGATT+TGG | 0.403546 | 5_2:-8237741 | Msa0754610:intron |
GATGAAGATTCTCTATCTCT+TGG | 0.405403 | 5_2:+8236697 | None:intergenic |
CAAAGCAAAGAATGTAAGAA+TGG | 0.443123 | 5_2:+8237409 | None:intergenic |
GATTCAACTTTGAAACCAAA+AGG | 0.445350 | 5_2:-8237342 | Msa0754610:CDS |
GGAATTGCTCATAGTGTTTG+AGG | 0.462284 | 5_2:+8237527 | None:intergenic |
GTACCCTATGTTTGAAGGGT+TGG | 0.464961 | 5_2:+8237458 | None:intergenic |
ACTTCAGGCAGTGACCTACT+TGG | 0.469914 | 5_2:+8236798 | None:intergenic |
GAAGGGTACCCTATGTTTGA+AGG | 0.486283 | 5_2:+8237453 | None:intergenic |
AAAGATTGTTGCAGTGACAT+AGG | 0.493042 | 5_2:+8237579 | None:intergenic |
AAGACCAACCCTTCAAACAT+AGG | 0.497958 | 5_2:-8237462 | Msa0754610:CDS |
AAGATTGTTGCAGTGACATA+GGG | 0.498647 | 5_2:+8237580 | None:intergenic |
TCACTGCAACAATCTTTCTC+TGG | 0.504710 | 5_2:-8237573 | Msa0754610:CDS |
AAAGCAAAGAATGTAAGAAT+GGG | 0.507449 | 5_2:+8237410 | None:intergenic |
CATTTGGATATAGATGGATA+AGG | 0.510043 | 5_2:-8237027 | Msa0754610:intron |
GTTGAATCAATGTTCAACAT+TGG | 0.511485 | 5_2:+8237357 | None:intergenic |
ACCTCATCAAATTCTGGCTA+TGG | 0.514888 | 5_2:-8236855 | Msa0754610:CDS |
GTTAAATTGCAAGACAGCTA+TGG | 0.515196 | 5_2:+8237814 | None:intergenic |
ATGAGTGAGTTCAATCACTT+AGG | 0.519827 | 5_2:+8236262 | None:intergenic |
TTTCTTGAAGCTGTTTCACA+TGG | 0.520049 | 5_2:+8236979 | None:intergenic |
GAAGTTCAGCCTAAGCGTGC+AGG | 0.528653 | 5_2:-8236322 | Msa0754610:CDS |
AACTTTGAAACCAAAAGGCA+AGG | 0.533663 | 5_2:-8237337 | Msa0754610:CDS |
CACTCTTATGTTTCTCACAA+TGG | 0.534111 | 5_2:+8236736 | None:intergenic |
TAGCTAGCTCCTGCACGCTT+AGG | 0.538929 | 5_2:+8236313 | None:intergenic |
GGAAATCTTTAACCTCAAAA+GGG | 0.543386 | 5_2:-8237302 | Msa0754610:CDS |
AACACTATGAGCAATTCCTC+AGG | 0.557225 | 5_2:-8237522 | Msa0754610:CDS |
TGACATCAAACGATGAGTCA+TGG | 0.561998 | 5_2:-8237763 | Msa0754610:CDS |
AGACCAACCCTTCAAACATA+GGG | 0.575956 | 5_2:-8237461 | Msa0754610:CDS |
AAGGGTACCCTATGTTTGAA+GGG | 0.581486 | 5_2:+8237454 | None:intergenic |
ACGATGAGTCATGGACAAGT+TGG | 0.581739 | 5_2:-8237754 | Msa0754610:CDS |
ATATCATACCTCAGCAATGA+CGG | 0.591116 | 5_2:+8236620 | None:intergenic |
TAGGTCACTGCCTGAAGTTG+AGG | 0.613765 | 5_2:-8236793 | Msa0754610:CDS |
CTGCAACAATCTTTCTCTGG+TGG | 0.629704 | 5_2:-8237570 | Msa0754610:CDS |
TTGAGGTTGTGTGAGAGCAA+TGG | 0.632047 | 5_2:+8237544 | None:intergenic |
AAGGAACAACGTAGAATCTG+TGG | 0.639673 | 5_2:-8236928 | Msa0754610:CDS |
TATTGGAAGAAAAGAACCAA+AGG | 0.640211 | 5_2:-8236947 | Msa0754610:CDS |
GAGATGTTAACTGCTTTGAG+AGG | 0.640656 | 5_2:-8237500 | Msa0754610:CDS |
ACCATAGCCAGAATTTGATG+AGG | 0.651808 | 5_2:+8236854 | None:intergenic |
TGACATAACCGTCATTGCTG+AGG | 0.654621 | 5_2:-8236628 | Msa0754610:intron |
CTCACACCTCAAAACCAAGT+AGG | 0.668534 | 5_2:-8236812 | Msa0754610:CDS |
AGATTGTTGCAGTGACATAG+GGG | 0.673309 | 5_2:+8237581 | None:intergenic |
AAAGCAGTTAACATCTCCTG+AGG | 0.687587 | 5_2:+8237506 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAATTAATGATACTAATTAA+TGG | - | chr5_2:8236993-8237012 | Msa0754610:CDS | 10.0% |
!! | AAATTAATGATACTAATTAA+TGG | - | chr5_2:8236993-8237012 | Msa0754610:CDS | 10.0% |
!!! | AAAGAACACTTATTTTAAAA+TGG | - | chr5_2:8237586-8237605 | Msa0754610:CDS | 15.0% |
!!! | GATTTTTTTAACATCAAAAT+AGG | - | chr5_2:8237626-8237645 | Msa0754610:intron | 15.0% |
!!! | AAAGAACACTTATTTTAAAA+TGG | - | chr5_2:8237586-8237605 | Msa0754610:CDS | 15.0% |
!!! | GATTTTTTTAACATCAAAAT+AGG | - | chr5_2:8237626-8237645 | Msa0754610:intron | 15.0% |
!!! | AATTTTGTTTGCACTTTTTT+TGG | - | chr5_2:8236368-8236387 | Msa0754610:intron | 20.0% |
!!! | AATTTGTTTAACAAATCAAG+AGG | + | chr5_2:8236978-8236997 | None:intergenic | 20.0% |
!! | ATTAATCATTTGGATATAGA+TGG | - | chr5_2:8237022-8237041 | Msa0754610:intron | 20.0% |
!!! | CACTTATATTTTTAAAACAG+TGG | + | chr5_2:8237470-8237489 | None:intergenic | 20.0% |
!!! | AACACTTATTTTAAAATGGA+GGG | - | chr5_2:8237590-8237609 | Msa0754610:CDS | 20.0% |
!!! | ATTTGAAAGAATCCAATTTT+AGG | - | chr5_2:8237829-8237848 | Msa0754610:five_prime_UTR | 20.0% |
!!! | AATTTTGTTTGCACTTTTTT+TGG | - | chr5_2:8236368-8236387 | Msa0754610:intron | 20.0% |
!!! | AATTTGTTTAACAAATCAAG+AGG | + | chr5_2:8236978-8236997 | None:intergenic | 20.0% |
!! | ATTAATCATTTGGATATAGA+TGG | - | chr5_2:8237022-8237041 | Msa0754610:intron | 20.0% |
!!! | CACTTATATTTTTAAAACAG+TGG | + | chr5_2:8237470-8237489 | None:intergenic | 20.0% |
!!! | AACACTTATTTTAAAATGGA+GGG | - | chr5_2:8237590-8237609 | Msa0754610:CDS | 20.0% |
!!! | TTGATGATTTTGTAATCTTC+TGG | + | chr5_2:8236440-8236459 | None:intergenic | 25.0% |
!!! | AATCTTTTTTTGGTAAGGAA+GGG | + | chr5_2:8236622-8236641 | None:intergenic | 25.0% |
! | AAAGCAAAGAATGTAAGAAT+GGG | + | chr5_2:8236648-8236667 | None:intergenic | 25.0% |
! | TCCTTAGAAAACCAAAAAAA+GGG | - | chr5_2:8236776-8236795 | Msa0754610:CDS | 25.0% |
! | ATGGTTACTCATTAATCATT+TGG | - | chr5_2:8237012-8237031 | Msa0754610:CDS | 25.0% |
!!! | GAACACTTATTTTAAAATGG+AGG | - | chr5_2:8237589-8237608 | Msa0754610:CDS | 25.0% |
!!! | TTGATGATTTTGTAATCTTC+TGG | + | chr5_2:8236440-8236459 | None:intergenic | 25.0% |
!!! | AATCTTTTTTTGGTAAGGAA+GGG | + | chr5_2:8236622-8236641 | None:intergenic | 25.0% |
! | AAAGCAAAGAATGTAAGAAT+GGG | + | chr5_2:8236648-8236667 | None:intergenic | 25.0% |
! | TCCTTAGAAAACCAAAAAAA+GGG | - | chr5_2:8236776-8236795 | Msa0754610:CDS | 25.0% |
! | ATGGTTACTCATTAATCATT+TGG | - | chr5_2:8237012-8237031 | Msa0754610:CDS | 25.0% |
!!! | GAACACTTATTTTAAAATGG+AGG | - | chr5_2:8237589-8237608 | Msa0754610:CDS | 25.0% |
AAAGTGCAAACAAAATTGTG+TGG | + | chr5_2:8236365-8236384 | None:intergenic | 30.0% | |
!!! | GAATCTTTTTTTGGTAAGGA+AGG | + | chr5_2:8236623-8236642 | None:intergenic | 30.0% |
!!! | GGAAGAATCTTTTTTTGGTA+AGG | + | chr5_2:8236627-8236646 | None:intergenic | 30.0% |
!!! | GAATGGGAAGAATCTTTTTT+TGG | + | chr5_2:8236632-8236651 | None:intergenic | 30.0% |
CAAAGCAAAGAATGTAAGAA+TGG | + | chr5_2:8236649-8236668 | None:intergenic | 30.0% | |
!!! | TTCAACATTGGTTCTAGTTT+TGG | + | chr5_2:8236689-8236708 | None:intergenic | 30.0% |
GTTGAATCAATGTTCAACAT+TGG | + | chr5_2:8236701-8236720 | None:intergenic | 30.0% | |
!! | GATTCAACTTTGAAACCAAA+AGG | - | chr5_2:8236713-8236732 | Msa0754610:CDS | 30.0% |
! | TGATTAAAAACCTTGCCTTT+TGG | + | chr5_2:8236731-8236750 | None:intergenic | 30.0% |
! | AAAGGCAAGGTTTTTAATCA+TGG | - | chr5_2:8236731-8236750 | Msa0754610:CDS | 30.0% |
! | AAGGCAAGGTTTTTAATCAT+GGG | - | chr5_2:8236732-8236751 | Msa0754610:CDS | 30.0% |
GGAAATCTTTAACCTCAAAA+GGG | - | chr5_2:8236753-8236772 | Msa0754610:CDS | 30.0% | |
GTCCTTAGAAAACCAAAAAA+AGG | - | chr5_2:8236775-8236794 | Msa0754610:CDS | 30.0% | |
!!! | TCCCTTTTTTTGGTTTTCTA+AGG | + | chr5_2:8236780-8236799 | None:intergenic | 30.0% |
!!! | AATTGAACCTTTTTCAAGTC+TGG | + | chr5_2:8236932-8236951 | None:intergenic | 30.0% |
CATTTGGATATAGATGGATA+AGG | - | chr5_2:8237028-8237047 | Msa0754610:intron | 30.0% | |
TCAAGAAAAAGTGAAGCTAT+TGG | - | chr5_2:8237091-8237110 | Msa0754610:intron | 30.0% | |
TATTGGAAGAAAAGAACCAA+AGG | - | chr5_2:8237108-8237127 | Msa0754610:intron | 30.0% | |
!! | TACTTAGTTTGTCTATCTTC+TGG | - | chr5_2:8237691-8237710 | Msa0754610:intron | 30.0% |
AAAGTGCAAACAAAATTGTG+TGG | + | chr5_2:8236365-8236384 | None:intergenic | 30.0% | |
!!! | GAATCTTTTTTTGGTAAGGA+AGG | + | chr5_2:8236623-8236642 | None:intergenic | 30.0% |
!!! | GGAAGAATCTTTTTTTGGTA+AGG | + | chr5_2:8236627-8236646 | None:intergenic | 30.0% |
!!! | GAATGGGAAGAATCTTTTTT+TGG | + | chr5_2:8236632-8236651 | None:intergenic | 30.0% |
CAAAGCAAAGAATGTAAGAA+TGG | + | chr5_2:8236649-8236668 | None:intergenic | 30.0% | |
!!! | TTCAACATTGGTTCTAGTTT+TGG | + | chr5_2:8236689-8236708 | None:intergenic | 30.0% |
GTTGAATCAATGTTCAACAT+TGG | + | chr5_2:8236701-8236720 | None:intergenic | 30.0% | |
!! | GATTCAACTTTGAAACCAAA+AGG | - | chr5_2:8236713-8236732 | Msa0754610:CDS | 30.0% |
! | TGATTAAAAACCTTGCCTTT+TGG | + | chr5_2:8236731-8236750 | None:intergenic | 30.0% |
! | AAAGGCAAGGTTTTTAATCA+TGG | - | chr5_2:8236731-8236750 | Msa0754610:CDS | 30.0% |
! | AAGGCAAGGTTTTTAATCAT+GGG | - | chr5_2:8236732-8236751 | Msa0754610:CDS | 30.0% |
GGAAATCTTTAACCTCAAAA+GGG | - | chr5_2:8236753-8236772 | Msa0754610:CDS | 30.0% | |
GTCCTTAGAAAACCAAAAAA+AGG | - | chr5_2:8236775-8236794 | Msa0754610:CDS | 30.0% | |
!!! | TCCCTTTTTTTGGTTTTCTA+AGG | + | chr5_2:8236780-8236799 | None:intergenic | 30.0% |
!!! | AATTGAACCTTTTTCAAGTC+TGG | + | chr5_2:8236932-8236951 | None:intergenic | 30.0% |
CATTTGGATATAGATGGATA+AGG | - | chr5_2:8237028-8237047 | Msa0754610:intron | 30.0% | |
TCAAGAAAAAGTGAAGCTAT+TGG | - | chr5_2:8237091-8237110 | Msa0754610:intron | 30.0% | |
TATTGGAAGAAAAGAACCAA+AGG | - | chr5_2:8237108-8237127 | Msa0754610:intron | 30.0% | |
!! | TACTTAGTTTGTCTATCTTC+TGG | - | chr5_2:8237691-8237710 | Msa0754610:intron | 30.0% |
GTTAAATTGCAAGACAGCTA+TGG | + | chr5_2:8236244-8236263 | None:intergenic | 35.0% | |
AAGATTGTTGCAGTGACATA+GGG | + | chr5_2:8236478-8236497 | None:intergenic | 35.0% | |
AAAGATTGTTGCAGTGACAT+AGG | + | chr5_2:8236479-8236498 | None:intergenic | 35.0% | |
!! | TTGGTCTTAAGTGTCTTTGT+AGG | + | chr5_2:8236581-8236600 | None:intergenic | 35.0% |
!! | AACTTTGAAACCAAAAGGCA+AGG | - | chr5_2:8236718-8236737 | Msa0754610:CDS | 35.0% |
GGGAAATCTTTAACCTCAAA+AGG | - | chr5_2:8236752-8236771 | Msa0754610:CDS | 35.0% | |
! | CTCTCTTGAATATTGCGTTT+TGG | + | chr5_2:8236803-8236822 | None:intergenic | 35.0% |
TATGTGATCTTGAGCATTTC+TGG | + | chr5_2:8236846-8236865 | None:intergenic | 35.0% | |
ATGGATAAGGCTTCTGTATT+AGG | - | chr5_2:8237041-8237060 | Msa0754610:intron | 35.0% | |
! | TTTCTTGAAGCTGTTTCACA+TGG | + | chr5_2:8237079-8237098 | None:intergenic | 35.0% |
CACTCTTATGTTTCTCACAA+TGG | + | chr5_2:8237322-8237341 | None:intergenic | 35.0% | |
GATGAAGATTCTCTATCTCT+TGG | + | chr5_2:8237361-8237380 | None:intergenic | 35.0% | |
! | AGTAGTTGTGCATTGCTATT+TGG | - | chr5_2:8237392-8237411 | Msa0754610:CDS | 35.0% |
ATATCATACCTCAGCAATGA+CGG | + | chr5_2:8237438-8237457 | None:intergenic | 35.0% | |
ATGAGTGAGTTCAATCACTT+AGG | + | chr5_2:8237796-8237815 | None:intergenic | 35.0% | |
GTTAAATTGCAAGACAGCTA+TGG | + | chr5_2:8236244-8236263 | None:intergenic | 35.0% | |
AAGATTGTTGCAGTGACATA+GGG | + | chr5_2:8236478-8236497 | None:intergenic | 35.0% | |
AAAGATTGTTGCAGTGACAT+AGG | + | chr5_2:8236479-8236498 | None:intergenic | 35.0% | |
!! | TTGGTCTTAAGTGTCTTTGT+AGG | + | chr5_2:8236581-8236600 | None:intergenic | 35.0% |
!! | AACTTTGAAACCAAAAGGCA+AGG | - | chr5_2:8236718-8236737 | Msa0754610:CDS | 35.0% |
GGGAAATCTTTAACCTCAAA+AGG | - | chr5_2:8236752-8236771 | Msa0754610:CDS | 35.0% | |
! | CTCTCTTGAATATTGCGTTT+TGG | + | chr5_2:8236803-8236822 | None:intergenic | 35.0% |
TATGTGATCTTGAGCATTTC+TGG | + | chr5_2:8236846-8236865 | None:intergenic | 35.0% | |
ATGGATAAGGCTTCTGTATT+AGG | - | chr5_2:8237041-8237060 | Msa0754610:intron | 35.0% | |
! | TTTCTTGAAGCTGTTTCACA+TGG | + | chr5_2:8237079-8237098 | None:intergenic | 35.0% |
CACTCTTATGTTTCTCACAA+TGG | + | chr5_2:8237322-8237341 | None:intergenic | 35.0% | |
GATGAAGATTCTCTATCTCT+TGG | + | chr5_2:8237361-8237380 | None:intergenic | 35.0% | |
! | AGTAGTTGTGCATTGCTATT+TGG | - | chr5_2:8237392-8237411 | Msa0754610:CDS | 35.0% |
ATATCATACCTCAGCAATGA+CGG | + | chr5_2:8237438-8237457 | None:intergenic | 35.0% | |
ATGAGTGAGTTCAATCACTT+AGG | + | chr5_2:8237796-8237815 | None:intergenic | 35.0% | |
TGACATCAAACGATGAGTCA+TGG | - | chr5_2:8236292-8236311 | Msa0754610:CDS | 40.0% | |
!! | GACAAGTTGGTTGTGTGATT+TGG | - | chr5_2:8236314-8236333 | Msa0754610:CDS | 40.0% |
AAACTCTTGTGACTTTCCAC+AGG | - | chr5_2:8236412-8236431 | Msa0754610:intron | 40.0% | |
!! | TTGTAATCTTCTGGTTCCTG+TGG | + | chr5_2:8236431-8236450 | None:intergenic | 40.0% |
AGATTGTTGCAGTGACATAG+GGG | + | chr5_2:8236477-8236496 | None:intergenic | 40.0% | |
TCACTGCAACAATCTTTCTC+TGG | - | chr5_2:8236482-8236501 | Msa0754610:intron | 40.0% | |
GGAATTGCTCATAGTGTTTG+AGG | + | chr5_2:8236531-8236550 | None:intergenic | 40.0% | |
AACACTATGAGCAATTCCTC+AGG | - | chr5_2:8236533-8236552 | Msa0754610:intron | 40.0% | |
AAAGCAGTTAACATCTCCTG+AGG | + | chr5_2:8236552-8236571 | None:intergenic | 40.0% | |
! | GAGATGTTAACTGCTTTGAG+AGG | - | chr5_2:8236555-8236574 | Msa0754610:intron | 40.0% |
AAGACCAACCCTTCAAACAT+AGG | - | chr5_2:8236593-8236612 | Msa0754610:intron | 40.0% | |
AGACCAACCCTTCAAACATA+GGG | - | chr5_2:8236594-8236613 | Msa0754610:intron | 40.0% | |
!! | AAGGGTACCCTATGTTTGAA+GGG | + | chr5_2:8236604-8236623 | None:intergenic | 40.0% |
!! | GTTTTCTAAGGACCCTTTTG+AGG | + | chr5_2:8236768-8236787 | None:intergenic | 40.0% |
!! | TGCGTTTTGGTCCCTTTTTT+TGG | + | chr5_2:8236790-8236809 | None:intergenic | 40.0% |
ACTCCTTCCAGACTTGAAAA+AGG | - | chr5_2:8236922-8236941 | Msa0754610:CDS | 40.0% | |
!!! | GAACCTTTTTCAAGTCTGGA+AGG | + | chr5_2:8236928-8236947 | None:intergenic | 40.0% |
CAGATTCTACGTTGTTCCTT+TGG | + | chr5_2:8237127-8237146 | None:intergenic | 40.0% | |
AAGGAACAACGTAGAATCTG+TGG | - | chr5_2:8237127-8237146 | Msa0754610:intron | 40.0% | |
TCAGACACCTCATCAAATTC+TGG | - | chr5_2:8237194-8237213 | Msa0754610:CDS | 40.0% | |
! | ACCTCATCAAATTCTGGCTA+TGG | - | chr5_2:8237200-8237219 | Msa0754610:CDS | 40.0% |
ACCATAGCCAGAATTTGATG+AGG | + | chr5_2:8237204-8237223 | None:intergenic | 40.0% | |
! | GACGGTTATGTCAAGTTTTG+TGG | + | chr5_2:8237420-8237439 | None:intergenic | 40.0% |
TCTTCTGGTACAAATGCAGA+TGG | - | chr5_2:8237706-8237725 | Msa0754610:intron | 40.0% | |
TGACATCAAACGATGAGTCA+TGG | - | chr5_2:8236292-8236311 | Msa0754610:CDS | 40.0% | |
!! | GACAAGTTGGTTGTGTGATT+TGG | - | chr5_2:8236314-8236333 | Msa0754610:CDS | 40.0% |
AAACTCTTGTGACTTTCCAC+AGG | - | chr5_2:8236412-8236431 | Msa0754610:intron | 40.0% | |
!! | TTGTAATCTTCTGGTTCCTG+TGG | + | chr5_2:8236431-8236450 | None:intergenic | 40.0% |
AGATTGTTGCAGTGACATAG+GGG | + | chr5_2:8236477-8236496 | None:intergenic | 40.0% | |
TCACTGCAACAATCTTTCTC+TGG | - | chr5_2:8236482-8236501 | Msa0754610:intron | 40.0% | |
GGAATTGCTCATAGTGTTTG+AGG | + | chr5_2:8236531-8236550 | None:intergenic | 40.0% | |
AACACTATGAGCAATTCCTC+AGG | - | chr5_2:8236533-8236552 | Msa0754610:intron | 40.0% | |
AAAGCAGTTAACATCTCCTG+AGG | + | chr5_2:8236552-8236571 | None:intergenic | 40.0% | |
! | GAGATGTTAACTGCTTTGAG+AGG | - | chr5_2:8236555-8236574 | Msa0754610:intron | 40.0% |
AAGACCAACCCTTCAAACAT+AGG | - | chr5_2:8236593-8236612 | Msa0754610:intron | 40.0% | |
AGACCAACCCTTCAAACATA+GGG | - | chr5_2:8236594-8236613 | Msa0754610:intron | 40.0% | |
!! | AAGGGTACCCTATGTTTGAA+GGG | + | chr5_2:8236604-8236623 | None:intergenic | 40.0% |
!! | GTTTTCTAAGGACCCTTTTG+AGG | + | chr5_2:8236768-8236787 | None:intergenic | 40.0% |
!! | TGCGTTTTGGTCCCTTTTTT+TGG | + | chr5_2:8236790-8236809 | None:intergenic | 40.0% |
ACTCCTTCCAGACTTGAAAA+AGG | - | chr5_2:8236922-8236941 | Msa0754610:CDS | 40.0% | |
!!! | GAACCTTTTTCAAGTCTGGA+AGG | + | chr5_2:8236928-8236947 | None:intergenic | 40.0% |
CAGATTCTACGTTGTTCCTT+TGG | + | chr5_2:8237127-8237146 | None:intergenic | 40.0% | |
AAGGAACAACGTAGAATCTG+TGG | - | chr5_2:8237127-8237146 | Msa0754610:intron | 40.0% | |
TCAGACACCTCATCAAATTC+TGG | - | chr5_2:8237194-8237213 | Msa0754610:CDS | 40.0% | |
! | ACCTCATCAAATTCTGGCTA+TGG | - | chr5_2:8237200-8237219 | Msa0754610:CDS | 40.0% |
ACCATAGCCAGAATTTGATG+AGG | + | chr5_2:8237204-8237223 | None:intergenic | 40.0% | |
! | GACGGTTATGTCAAGTTTTG+TGG | + | chr5_2:8237420-8237439 | None:intergenic | 40.0% |
TCTTCTGGTACAAATGCAGA+TGG | - | chr5_2:8237706-8237725 | Msa0754610:intron | 40.0% | |
ACGATGAGTCATGGACAAGT+TGG | - | chr5_2:8236301-8236320 | Msa0754610:CDS | 45.0% | |
CTGCAACAATCTTTCTCTGG+TGG | - | chr5_2:8236485-8236504 | Msa0754610:intron | 45.0% | |
TTGAGGTTGTGTGAGAGCAA+TGG | + | chr5_2:8236514-8236533 | None:intergenic | 45.0% | |
GTACCCTATGTTTGAAGGGT+TGG | + | chr5_2:8236600-8236619 | None:intergenic | 45.0% | |
!! | GAAGGGTACCCTATGTTTGA+AGG | + | chr5_2:8236605-8236624 | None:intergenic | 45.0% |
CTCACACCTCAAAACCAAGT+AGG | - | chr5_2:8237243-8237262 | Msa0754610:CDS | 45.0% | |
!!! | CAGTGACCTACTTGGTTTTG+AGG | + | chr5_2:8237252-8237271 | None:intergenic | 45.0% |
TGACATAACCGTCATTGCTG+AGG | - | chr5_2:8237427-8237446 | Msa0754610:CDS | 45.0% | |
ACGATGAGTCATGGACAAGT+TGG | - | chr5_2:8236301-8236320 | Msa0754610:CDS | 45.0% | |
CTGCAACAATCTTTCTCTGG+TGG | - | chr5_2:8236485-8236504 | Msa0754610:intron | 45.0% | |
TTGAGGTTGTGTGAGAGCAA+TGG | + | chr5_2:8236514-8236533 | None:intergenic | 45.0% | |
GTACCCTATGTTTGAAGGGT+TGG | + | chr5_2:8236600-8236619 | None:intergenic | 45.0% | |
!! | GAAGGGTACCCTATGTTTGA+AGG | + | chr5_2:8236605-8236624 | None:intergenic | 45.0% |
CTCACACCTCAAAACCAAGT+AGG | - | chr5_2:8237243-8237262 | Msa0754610:CDS | 45.0% | |
!!! | CAGTGACCTACTTGGTTTTG+AGG | + | chr5_2:8237252-8237271 | None:intergenic | 45.0% |
TGACATAACCGTCATTGCTG+AGG | - | chr5_2:8237427-8237446 | Msa0754610:CDS | 45.0% | |
ACTTCAGGCAGTGACCTACT+TGG | + | chr5_2:8237260-8237279 | None:intergenic | 50.0% | |
TAGGTCACTGCCTGAAGTTG+AGG | - | chr5_2:8237262-8237281 | Msa0754610:CDS | 50.0% | |
GACACTCTTGCCTCAACTTC+AGG | + | chr5_2:8237275-8237294 | None:intergenic | 50.0% | |
ACTTCAGGCAGTGACCTACT+TGG | + | chr5_2:8237260-8237279 | None:intergenic | 50.0% | |
TAGGTCACTGCCTGAAGTTG+AGG | - | chr5_2:8237262-8237281 | Msa0754610:CDS | 50.0% | |
GACACTCTTGCCTCAACTTC+AGG | + | chr5_2:8237275-8237294 | None:intergenic | 50.0% | |
GAAGTTCAGCCTAAGCGTGC+AGG | - | chr5_2:8237733-8237752 | Msa0754610:intron | 55.0% | |
TAGCTAGCTCCTGCACGCTT+AGG | + | chr5_2:8237745-8237764 | None:intergenic | 55.0% | |
GAAGTTCAGCCTAAGCGTGC+AGG | - | chr5_2:8237733-8237752 | Msa0754610:intron | 55.0% | |
TAGCTAGCTCCTGCACGCTT+AGG | + | chr5_2:8237745-8237764 | None:intergenic | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5_2 | gene | 8236229 | 8237848 | 8236229 | ID=Msa0754610;Name=Msa0754610 |
chr5_2 | mRNA | 8236229 | 8237848 | 8236229 | ID=Msa0754610-mRNA-1;Parent=Msa0754610;Name=Msa0754610-mRNA-1;_AED=0.01;_eAED=0.01;_QI=62|1|1|1|1|1|4|58|342 |
chr5_2 | exon | 8236229 | 8236352 | 8236229 | ID=Msa0754610-mRNA-1:exon:3789;Parent=Msa0754610-mRNA-1 |
chr5_2 | exon | 8236629 | 8237036 | 8236629 | ID=Msa0754610-mRNA-1:exon:3788;Parent=Msa0754610-mRNA-1 |
chr5_2 | exon | 8237134 | 8237643 | 8237134 | ID=Msa0754610-mRNA-1:exon:3787;Parent=Msa0754610-mRNA-1 |
chr5_2 | exon | 8237742 | 8237848 | 8237742 | ID=Msa0754610-mRNA-1:exon:3786;Parent=Msa0754610-mRNA-1 |
chr5_2 | five_prime_UTR | 8237787 | 8237848 | 8237787 | ID=Msa0754610-mRNA-1:five_prime_utr;Parent=Msa0754610-mRNA-1 |
chr5_2 | CDS | 8237742 | 8237786 | 8237742 | ID=Msa0754610-mRNA-1:cds;Parent=Msa0754610-mRNA-1 |
chr5_2 | CDS | 8237134 | 8237643 | 8237134 | ID=Msa0754610-mRNA-1:cds;Parent=Msa0754610-mRNA-1 |
chr5_2 | CDS | 8236629 | 8237036 | 8236629 | ID=Msa0754610-mRNA-1:cds;Parent=Msa0754610-mRNA-1 |
chr5_2 | CDS | 8236287 | 8236352 | 8236287 | ID=Msa0754610-mRNA-1:cds;Parent=Msa0754610-mRNA-1 |
chr5_2 | three_prime_UTR | 8236229 | 8236286 | 8236229 | ID=Msa0754610-mRNA-1:three_prime_utr;Parent=Msa0754610-mRNA-1 |
Gene Sequence |
Protein sequence |