Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0797430 | XP_003611499.1 | 86.930 | 329 | 21 | 5 | 1 | 322 | 1 | 314 | 0.0 | 555 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0797430 | sp|Q9T072|BH025_ARATH | 39.571 | 326 | 155 | 14 | 9 | 320 | 6 | 303 | 4.43e-47 | 164 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0797430 | G7K131 | 86.930 | 329 | 21 | 5 | 1 | 322 | 1 | 314 | 0.0 | 555 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0797430 | TF | bHLH |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0754610 | Msa0797430 | 0.980535 | 1.916059e-150 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0797430 | MtrunA17_Chr5g0400661 | 86.930 | 329 | 21 | 5 | 1 | 322 | 1 | 314 | 0.0 | 555 |
| Msa0797430 | MtrunA17_Chr4g0054571 | 47.305 | 334 | 116 | 11 | 1 | 322 | 24 | 309 | 1.23e-74 | 233 |
| Msa0797430 | MtrunA17_Chr2g0280161 | 41.577 | 279 | 123 | 9 | 62 | 322 | 74 | 330 | 2.20e-51 | 173 |
| Msa0797430 | MtrunA17_Chr4g0049331 | 43.902 | 246 | 96 | 8 | 86 | 322 | 75 | 287 | 5.87e-49 | 166 |
| Msa0797430 | MtrunA17_Chr2g0333621 | 40.800 | 250 | 116 | 8 | 75 | 322 | 72 | 291 | 1.72e-46 | 159 |
| Msa0797430 | MtrunA17_Chr5g0400621 | 41.264 | 269 | 111 | 7 | 61 | 322 | 81 | 309 | 1.87e-46 | 160 |
| Msa0797430 | MtrunA17_Chr4g0054561 | 39.474 | 266 | 104 | 11 | 64 | 322 | 90 | 305 | 1.44e-43 | 152 |
| Msa0797430 | MtrunA17_Chr4g0054551 | 39.924 | 263 | 107 | 9 | 64 | 322 | 90 | 305 | 3.85e-43 | 151 |
| Msa0797430 | MtrunA17_Chr4g0054581 | 35.411 | 353 | 181 | 12 | 6 | 322 | 13 | 354 | 8.53e-43 | 151 |
| Msa0797430 | MtrunA17_Chr8g0336681 | 37.652 | 247 | 131 | 7 | 78 | 322 | 90 | 315 | 9.16e-43 | 150 |
| Msa0797430 | MtrunA17_Chr2g0333641 | 40.678 | 236 | 114 | 7 | 87 | 322 | 78 | 287 | 6.10e-42 | 147 |
| Msa0797430 | MtrunA17_Chr4g0002781 | 39.113 | 248 | 120 | 7 | 80 | 322 | 108 | 329 | 1.04e-41 | 148 |
| Msa0797430 | MtrunA17_Chr4g0002801 | 39.024 | 246 | 119 | 5 | 80 | 322 | 93 | 310 | 1.25e-41 | 147 |
| Msa0797430 | MtrunA17_Chr5g0400641 | 48.466 | 163 | 71 | 2 | 160 | 322 | 1 | 150 | 1.98e-41 | 141 |
| Msa0797430 | MtrunA17_Chr5g0400671 | 36.042 | 283 | 133 | 10 | 59 | 322 | 50 | 303 | 3.47e-41 | 145 |
| Msa0797430 | MtrunA17_Chr2g0307131 | 44.693 | 179 | 84 | 2 | 145 | 322 | 167 | 331 | 3.57e-40 | 144 |
| Msa0797430 | MtrunA17_Chr7g0225901 | 38.117 | 223 | 119 | 5 | 102 | 322 | 35 | 240 | 1.03e-38 | 137 |
| Msa0797430 | MtrunA17_Chr6g0468491 | 35.473 | 296 | 140 | 11 | 34 | 322 | 38 | 289 | 2.49e-38 | 138 |
| Msa0797430 | MtrunA17_Chr2g0307141 | 43.860 | 171 | 83 | 2 | 152 | 322 | 178 | 335 | 3.22e-38 | 139 |
| Msa0797430 | MtrunA17_Chr4g0054621 | 40.102 | 197 | 92 | 4 | 130 | 322 | 143 | 317 | 1.73e-35 | 131 |
| Msa0797430 | MtrunA17_Chr4g0033291 | 40.609 | 197 | 96 | 4 | 126 | 322 | 129 | 304 | 2.32e-34 | 128 |
| Msa0797430 | MtrunA17_Chr6g0468461 | 30.141 | 355 | 163 | 11 | 2 | 322 | 8 | 311 | 5.64e-33 | 124 |
| Msa0797430 | MtrunA17_Chr2g0333611 | 40.588 | 170 | 80 | 4 | 156 | 322 | 44 | 195 | 7.59e-33 | 121 |
| Msa0797430 | MtrunA17_Chr4g0033391 | 38.919 | 185 | 94 | 4 | 141 | 322 | 128 | 296 | 1.17e-32 | 123 |
| Msa0797430 | MtrunA17_Chr7g0249811 | 34.728 | 239 | 110 | 5 | 85 | 322 | 115 | 308 | 1.26e-32 | 123 |
| Msa0797430 | MtrunA17_Chr4g0033281 | 32.641 | 337 | 158 | 12 | 7 | 322 | 13 | 301 | 1.08e-30 | 118 |
| Msa0797430 | MtrunA17_Chr2g0333541 | 39.521 | 167 | 88 | 3 | 157 | 322 | 94 | 248 | 5.37e-26 | 104 |
| Msa0797430 | MtrunA17_Chr7g0233441 | 37.857 | 140 | 64 | 2 | 183 | 322 | 60 | 176 | 1.20e-19 | 85.5 |
| Msa0797430 | MtrunA17_Chr4g0002831 | 36.538 | 156 | 74 | 5 | 168 | 322 | 53 | 184 | 9.92e-19 | 83.2 |
| Msa0797430 | MtrunA17_Chr4g0002851 | 34.194 | 155 | 70 | 3 | 168 | 322 | 54 | 176 | 2.28e-18 | 82.0 |
| Msa0797430 | MtrunA17_Chr7g0275821 | 32.000 | 150 | 77 | 3 | 157 | 304 | 252 | 378 | 1.49e-17 | 82.8 |
| Msa0797430 | MtrunA17_Chr7g0260841 | 58.065 | 62 | 25 | 1 | 157 | 217 | 355 | 416 | 1.82e-16 | 79.7 |
| Msa0797430 | MtrunA17_Chr1g0185621 | 28.966 | 145 | 98 | 2 | 157 | 301 | 475 | 614 | 1.38e-15 | 77.4 |
| Msa0797430 | MtrunA17_Chr8g0366751 | 45.833 | 72 | 39 | 0 | 139 | 210 | 444 | 515 | 7.77e-14 | 72.0 |
| Msa0797430 | MtrunA17_Chr8g0346161 | 28.409 | 176 | 106 | 6 | 123 | 295 | 262 | 420 | 9.16e-14 | 71.6 |
| Msa0797430 | MtrunA17_Chr3g0131691 | 29.379 | 177 | 112 | 5 | 143 | 316 | 288 | 454 | 1.04e-13 | 71.6 |
| Msa0797430 | MtrunA17_Chr7g0273081 | 24.064 | 187 | 135 | 2 | 130 | 309 | 90 | 276 | 1.48e-13 | 70.1 |
| Msa0797430 | MtrunA17_Chr5g0411341 | 27.094 | 203 | 127 | 5 | 123 | 314 | 463 | 655 | 3.12e-13 | 70.5 |
| Msa0797430 | MtrunA17_Chr8g0386921 | 22.705 | 207 | 128 | 3 | 117 | 303 | 371 | 565 | 4.88e-12 | 66.6 |
| Msa0797430 | MtrunA17_Chr1g0211081 | 27.957 | 186 | 114 | 6 | 150 | 315 | 310 | 495 | 7.58e-12 | 65.9 |
| Msa0797430 | MtrunA17_Chr7g0270871 | 44.118 | 68 | 38 | 0 | 142 | 209 | 197 | 264 | 8.47e-12 | 65.5 |
| Msa0797430 | MtrunA17_Chr8g0365711 | 23.280 | 189 | 124 | 3 | 132 | 319 | 230 | 398 | 1.16e-11 | 65.1 |
| Msa0797430 | MtrunA17_Chr4g0028071 | 27.972 | 143 | 85 | 5 | 159 | 298 | 151 | 278 | 1.35e-11 | 64.7 |
| Msa0797430 | MtrunA17_Chr8g0346151 | 35.366 | 82 | 50 | 1 | 134 | 215 | 259 | 337 | 1.61e-11 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0797430 | AT4G37850.2 | 39.571 | 326 | 155 | 14 | 9 | 320 | 6 | 303 | 4.50e-48 | 164 |
| Msa0797430 | AT4G37850.1 | 39.571 | 326 | 155 | 14 | 9 | 320 | 6 | 303 | 4.50e-48 | 164 |
| Msa0797430 | AT2G22750.2 | 50.820 | 183 | 78 | 4 | 142 | 321 | 108 | 281 | 6.45e-42 | 147 |
| Msa0797430 | AT2G22750.1 | 50.820 | 183 | 78 | 4 | 142 | 321 | 108 | 281 | 7.30e-42 | 147 |
| Msa0797430 | AT2G22750.4 | 50.820 | 183 | 78 | 4 | 142 | 321 | 136 | 309 | 1.46e-41 | 147 |
| Msa0797430 | AT2G22750.3 | 50.820 | 183 | 78 | 4 | 142 | 321 | 136 | 309 | 1.49e-41 | 147 |
| Msa0797430 | AT2G22750.5 | 40.062 | 322 | 162 | 9 | 9 | 321 | 6 | 305 | 1.66e-41 | 147 |
| Msa0797430 | AT2G22760.2 | 46.154 | 169 | 79 | 3 | 155 | 322 | 117 | 274 | 2.37e-41 | 145 |
| Msa0797430 | AT2G22760.1 | 45.562 | 169 | 80 | 3 | 155 | 322 | 117 | 274 | 7.99e-41 | 144 |
| Msa0797430 | AT2G22770.1 | 42.604 | 169 | 95 | 1 | 156 | 322 | 131 | 299 | 1.11e-34 | 129 |
| Msa0797430 | AT2G46510.1 | 47.297 | 74 | 39 | 0 | 139 | 212 | 377 | 450 | 1.32e-16 | 80.9 |
| Msa0797430 | AT1G32640.1 | 30.570 | 193 | 109 | 6 | 139 | 321 | 434 | 611 | 3.42e-16 | 79.7 |
| Msa0797430 | AT4G09820.1 | 30.464 | 151 | 72 | 2 | 153 | 303 | 359 | 476 | 2.11e-14 | 74.3 |
| Msa0797430 | AT1G01260.1 | 39.241 | 79 | 48 | 0 | 137 | 215 | 413 | 491 | 3.77e-14 | 73.6 |
| Msa0797430 | AT1G01260.2 | 39.241 | 79 | 48 | 0 | 137 | 215 | 413 | 491 | 3.77e-14 | 73.6 |
| Msa0797430 | AT1G01260.3 | 39.241 | 79 | 48 | 0 | 137 | 215 | 413 | 491 | 3.77e-14 | 73.6 |
| Msa0797430 | AT1G12860.2 | 29.448 | 163 | 100 | 5 | 158 | 316 | 268 | 419 | 5.83e-14 | 72.4 |
| Msa0797430 | AT1G12860.1 | 29.448 | 163 | 100 | 5 | 158 | 316 | 268 | 419 | 7.97e-14 | 72.4 |
| Msa0797430 | AT4G16430.1 | 40.476 | 84 | 46 | 1 | 131 | 214 | 298 | 377 | 1.39e-13 | 71.6 |
| Msa0797430 | AT5G46760.1 | 30.263 | 152 | 83 | 4 | 157 | 301 | 415 | 550 | 2.27e-13 | 71.2 |
| Msa0797430 | AT4G17880.1 | 27.485 | 171 | 107 | 4 | 131 | 301 | 394 | 547 | 1.20e-12 | 68.9 |
| Msa0797430 | AT2G16910.1 | 27.811 | 169 | 87 | 4 | 158 | 304 | 315 | 470 | 1.91e-12 | 68.2 |
| Msa0797430 | AT3G26744.6 | 27.907 | 172 | 106 | 6 | 158 | 322 | 308 | 468 | 2.77e-12 | 67.8 |
| Msa0797430 | AT3G26744.1 | 27.108 | 166 | 104 | 5 | 158 | 316 | 308 | 463 | 3.30e-12 | 67.4 |
| Msa0797430 | AT3G26744.4 | 27.108 | 166 | 104 | 5 | 158 | 316 | 308 | 463 | 3.30e-12 | 67.4 |
| Msa0797430 | AT3G26744.2 | 27.108 | 166 | 104 | 5 | 158 | 316 | 308 | 463 | 3.30e-12 | 67.4 |
| Msa0797430 | AT5G57150.3 | 29.189 | 185 | 113 | 5 | 144 | 318 | 41 | 217 | 4.23e-12 | 65.1 |
| Msa0797430 | AT5G57150.2 | 28.495 | 186 | 115 | 5 | 144 | 319 | 41 | 218 | 5.45e-12 | 65.1 |
| Msa0797430 | AT5G41315.2 | 26.144 | 153 | 103 | 3 | 157 | 299 | 449 | 601 | 6.69e-12 | 66.6 |
| Msa0797430 | AT5G41315.1 | 26.144 | 153 | 103 | 3 | 157 | 299 | 441 | 593 | 6.78e-12 | 66.6 |
| Msa0797430 | AT5G41315.3 | 26.144 | 153 | 103 | 3 | 157 | 299 | 446 | 598 | 6.99e-12 | 66.6 |
| Msa0797430 | AT5G57150.5 | 28.649 | 185 | 114 | 5 | 144 | 318 | 40 | 216 | 2.85e-11 | 62.8 |
| Msa0797430 | AT5G57150.4 | 28.962 | 183 | 112 | 5 | 144 | 316 | 41 | 215 | 3.12e-11 | 63.2 |
| Msa0797430 | AT3G61950.6 | 29.932 | 147 | 88 | 2 | 157 | 301 | 128 | 261 | 4.31e-11 | 63.2 |
| Msa0797430 | AT1G63650.3 | 26.174 | 149 | 103 | 3 | 157 | 299 | 405 | 552 | 4.87e-11 | 63.9 |
| Msa0797430 | AT1G63650.1 | 26.174 | 149 | 103 | 3 | 157 | 299 | 405 | 552 | 4.87e-11 | 63.9 |
| Msa0797430 | AT1G63650.2 | 26.174 | 149 | 103 | 3 | 157 | 299 | 405 | 552 | 4.87e-11 | 63.9 |
| Msa0797430 | AT3G61950.2 | 29.932 | 147 | 88 | 2 | 157 | 301 | 128 | 261 | 5.94e-11 | 62.8 |
| Msa0797430 | AT3G61950.3 | 29.932 | 147 | 88 | 2 | 157 | 301 | 179 | 312 | 6.65e-11 | 63.2 |
| Msa0797430 | AT5G57150.1 | 29.121 | 182 | 111 | 5 | 144 | 315 | 40 | 213 | 7.29e-11 | 62.0 |
| Msa0797430 | AT3G61950.1 | 29.932 | 147 | 88 | 2 | 157 | 301 | 179 | 312 | 8.02e-11 | 62.8 |
Find 49 sgRNAs with CRISPR-Local
Find 149 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATGTGATCTTGAGCATTTC+TGG | 0.145443 | 5_3:-9584781 | None:intergenic |
| AGTAGTTGTGCATTGCTATT+TGG | 0.235575 | 5_3:+9585330 | Msa0797430:CDS |
| TTCAACATTGGTTCTAGTTT+TGG | 0.266677 | 5_3:-9584624 | None:intergenic |
| ATGGATAAGGCTTCTGTATT+AGG | 0.299166 | 5_3:+9584979 | Msa0797430:CDS |
| CTCTCTTGAATATTGCGTTT+TGG | 0.303171 | 5_3:-9584738 | None:intergenic |
| TCAGACACCTCATCAAATTC+TGG | 0.305371 | 5_3:+9585132 | Msa0797430:CDS |
| ACTCCTTCCAGACTTGAAAA+AGG | 0.315242 | 5_3:+9584860 | Msa0797430:CDS |
| GGGAAATCTTTAACCTCAAA+AGG | 0.344535 | 5_3:+9584690 | Msa0797430:CDS |
| TTGGTCTTAAGTGTCTTTGT+AGG | 0.346951 | 5_3:-9584516 | None:intergenic |
| GACACTCTTGCCTCAACTTC+AGG | 0.353101 | 5_3:-9585210 | None:intergenic |
| CAGATTCTACGTTGTTCCTT+TGG | 0.354402 | 5_3:-9585062 | None:intergenic |
| GACAAGTTGGTTGTGTGATT+TGG | 0.403546 | 5_3:+9584252 | Msa0797430:CDS |
| GATGAAGATTCTCTATCTCT+TGG | 0.405403 | 5_3:-9585296 | None:intergenic |
| CAAAGCAAAGAATGTAAGAA+TGG | 0.443123 | 5_3:-9584584 | None:intergenic |
| GATTCAACTTTGAAACCAAA+AGG | 0.445350 | 5_3:+9584651 | Msa0797430:CDS |
| GGAATTGCTCATAGTGTTTG+AGG | 0.462284 | 5_3:-9584466 | None:intergenic |
| GTACCCTATGTTTGAAGGGT+TGG | 0.464961 | 5_3:-9584535 | None:intergenic |
| ACTTCAGGCAGTGACCTACT+TGG | 0.469914 | 5_3:-9585195 | None:intergenic |
| GAAGGGTACCCTATGTTTGA+AGG | 0.486283 | 5_3:-9584540 | None:intergenic |
| AAAGATTGTTGCAGTGACAT+AGG | 0.493042 | 5_3:-9584414 | None:intergenic |
| AAGACCAACCCTTCAAACAT+AGG | 0.497958 | 5_3:+9584531 | Msa0797430:CDS |
| AAGATTGTTGCAGTGACATA+GGG | 0.498647 | 5_3:-9584413 | None:intergenic |
| TCACTGCAACAATCTTTCTC+TGG | 0.504710 | 5_3:+9584420 | Msa0797430:CDS |
| AAAGCAAAGAATGTAAGAAT+GGG | 0.507449 | 5_3:-9584583 | None:intergenic |
| CATTTGGATATAGATGGATA+AGG | 0.510043 | 5_3:+9584966 | Msa0797430:intron |
| GTTGAATCAATGTTCAACAT+TGG | 0.511485 | 5_3:-9584636 | None:intergenic |
| ACCTCATCAAATTCTGGCTA+TGG | 0.514888 | 5_3:+9585138 | Msa0797430:CDS |
| GTTAAATTGCAAGACAGCTA+TGG | 0.515196 | 5_3:-9584179 | None:intergenic |
| TTTCTTGAAGCTGTTTCACA+TGG | 0.520049 | 5_3:-9585014 | None:intergenic |
| AACTTTGAAACCAAAAGGCA+AGG | 0.533663 | 5_3:+9584656 | Msa0797430:CDS |
| CACTCTTATGTTTCTCACAA+TGG | 0.534111 | 5_3:-9585257 | None:intergenic |
| GGAAATCTTTAACCTCAAAA+GGG | 0.543386 | 5_3:+9584691 | Msa0797430:CDS |
| AACACTATGAGCAATTCCTC+AGG | 0.557225 | 5_3:+9584471 | Msa0797430:CDS |
| TGACATCAAACGATGAGTCA+TGG | 0.561998 | 5_3:+9584230 | Msa0797430:CDS |
| AGACCAACCCTTCAAACATA+GGG | 0.575956 | 5_3:+9584532 | Msa0797430:CDS |
| AAGGGTACCCTATGTTTGAA+GGG | 0.581486 | 5_3:-9584539 | None:intergenic |
| ACGATGAGTCATGGACAAGT+TGG | 0.581739 | 5_3:+9584239 | Msa0797430:CDS |
| ATATCATACCTCAGCAATGA+CGG | 0.591116 | 5_3:-9585373 | None:intergenic |
| TAGGTCACTGCCTGAAGTTG+AGG | 0.613765 | 5_3:+9585200 | Msa0797430:CDS |
| CTGCAACAATCTTTCTCTGG+TGG | 0.629704 | 5_3:+9584423 | Msa0797430:CDS |
| TTGAGGTTGTGTGAGAGCAA+TGG | 0.632047 | 5_3:-9584449 | None:intergenic |
| AAGGAACAACGTAGAATCTG+TGG | 0.639673 | 5_3:+9585065 | Msa0797430:CDS |
| TATTGGAAGAAAAGAACCAA+AGG | 0.640211 | 5_3:+9585046 | Msa0797430:CDS |
| GAGATGTTAACTGCTTTGAG+AGG | 0.640656 | 5_3:+9584493 | Msa0797430:CDS |
| ACCATAGCCAGAATTTGATG+AGG | 0.651808 | 5_3:-9585139 | None:intergenic |
| TGACATAACCGTCATTGCTG+AGG | 0.654621 | 5_3:+9585365 | Msa0797430:CDS |
| CTCACACCTCAAAACCAAGT+AGG | 0.668534 | 5_3:+9585181 | Msa0797430:CDS |
| AGATTGTTGCAGTGACATAG+GGG | 0.673309 | 5_3:-9584412 | None:intergenic |
| AAAGCAGTTAACATCTCCTG+AGG | 0.687587 | 5_3:-9584487 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTAATGATACTAATTAA+TGG | + | chr5_3:9584931-9584950 | Msa0797430:intron | 10.0% |
| !! | AAATTAATGATACTAATTAA+TGG | + | chr5_3:9584931-9584950 | Msa0797430:intron | 10.0% |
| !!! | AATTTTGTTTGCACTTTTTT+TGG | + | chr5_3:9584306-9584325 | Msa0797430:intron | 20.0% |
| !!! | AATTTGTTTAACAAATCAAG+AGG | - | chr5_3:9584916-9584935 | None:intergenic | 20.0% |
| !! | ATTAATCATTTGGATATAGA+TGG | + | chr5_3:9584960-9584979 | Msa0797430:intron | 20.0% |
| !!! | AATTTTGTTTGCACTTTTTT+TGG | + | chr5_3:9584306-9584325 | Msa0797430:intron | 20.0% |
| !!! | AATTTGTTTAACAAATCAAG+AGG | - | chr5_3:9584916-9584935 | None:intergenic | 20.0% |
| !! | ATTAATCATTTGGATATAGA+TGG | + | chr5_3:9584960-9584979 | Msa0797430:intron | 20.0% |
| !!! | TTGATGATTTTGTAATCTTC+TGG | - | chr5_3:9584378-9584397 | None:intergenic | 25.0% |
| !!! | AATCTTTTTTTGGTAAGGAA+GGG | - | chr5_3:9584560-9584579 | None:intergenic | 25.0% |
| ! | AAAGCAAAGAATGTAAGAAT+GGG | - | chr5_3:9584586-9584605 | None:intergenic | 25.0% |
| ! | TCCTTAGAAAACCAAAAAAA+GGG | + | chr5_3:9584714-9584733 | Msa0797430:CDS | 25.0% |
| ! | ATGGTTACTCATTAATCATT+TGG | + | chr5_3:9584950-9584969 | Msa0797430:intron | 25.0% |
| !!! | TTGATGATTTTGTAATCTTC+TGG | - | chr5_3:9584378-9584397 | None:intergenic | 25.0% |
| !!! | AATCTTTTTTTGGTAAGGAA+GGG | - | chr5_3:9584560-9584579 | None:intergenic | 25.0% |
| ! | AAAGCAAAGAATGTAAGAAT+GGG | - | chr5_3:9584586-9584605 | None:intergenic | 25.0% |
| ! | TCCTTAGAAAACCAAAAAAA+GGG | + | chr5_3:9584714-9584733 | Msa0797430:CDS | 25.0% |
| ! | ATGGTTACTCATTAATCATT+TGG | + | chr5_3:9584950-9584969 | Msa0797430:intron | 25.0% |
| AAAGTGCAAACAAAATTGTG+TGG | - | chr5_3:9584303-9584322 | None:intergenic | 30.0% | |
| !!! | GAATCTTTTTTTGGTAAGGA+AGG | - | chr5_3:9584561-9584580 | None:intergenic | 30.0% |
| !!! | GGAAGAATCTTTTTTTGGTA+AGG | - | chr5_3:9584565-9584584 | None:intergenic | 30.0% |
| !!! | GAATGGGAAGAATCTTTTTT+TGG | - | chr5_3:9584570-9584589 | None:intergenic | 30.0% |
| CAAAGCAAAGAATGTAAGAA+TGG | - | chr5_3:9584587-9584606 | None:intergenic | 30.0% | |
| !!! | TTCAACATTGGTTCTAGTTT+TGG | - | chr5_3:9584627-9584646 | None:intergenic | 30.0% |
| GTTGAATCAATGTTCAACAT+TGG | - | chr5_3:9584639-9584658 | None:intergenic | 30.0% | |
| !! | GATTCAACTTTGAAACCAAA+AGG | + | chr5_3:9584651-9584670 | Msa0797430:CDS | 30.0% |
| ! | TGATTAAAAACCTTGCCTTT+TGG | - | chr5_3:9584669-9584688 | None:intergenic | 30.0% |
| ! | AAAGGCAAGGTTTTTAATCA+TGG | + | chr5_3:9584669-9584688 | Msa0797430:CDS | 30.0% |
| ! | AAGGCAAGGTTTTTAATCAT+GGG | + | chr5_3:9584670-9584689 | Msa0797430:CDS | 30.0% |
| GGAAATCTTTAACCTCAAAA+GGG | + | chr5_3:9584691-9584710 | Msa0797430:CDS | 30.0% | |
| GTCCTTAGAAAACCAAAAAA+AGG | + | chr5_3:9584713-9584732 | Msa0797430:CDS | 30.0% | |
| !!! | TCCCTTTTTTTGGTTTTCTA+AGG | - | chr5_3:9584718-9584737 | None:intergenic | 30.0% |
| !!! | AATTGAACCTTTTTCAAGTC+TGG | - | chr5_3:9584870-9584889 | None:intergenic | 30.0% |
| CATTTGGATATAGATGGATA+AGG | + | chr5_3:9584966-9584985 | Msa0797430:intron | 30.0% | |
| TCAAGAAAAAGTGAAGCTAT+TGG | + | chr5_3:9585029-9585048 | Msa0797430:CDS | 30.0% | |
| TATTGGAAGAAAAGAACCAA+AGG | + | chr5_3:9585046-9585065 | Msa0797430:CDS | 30.0% | |
| AAAGTGCAAACAAAATTGTG+TGG | - | chr5_3:9584303-9584322 | None:intergenic | 30.0% | |
| !!! | GAATCTTTTTTTGGTAAGGA+AGG | - | chr5_3:9584561-9584580 | None:intergenic | 30.0% |
| !!! | GGAAGAATCTTTTTTTGGTA+AGG | - | chr5_3:9584565-9584584 | None:intergenic | 30.0% |
| !!! | GAATGGGAAGAATCTTTTTT+TGG | - | chr5_3:9584570-9584589 | None:intergenic | 30.0% |
| CAAAGCAAAGAATGTAAGAA+TGG | - | chr5_3:9584587-9584606 | None:intergenic | 30.0% | |
| !!! | TTCAACATTGGTTCTAGTTT+TGG | - | chr5_3:9584627-9584646 | None:intergenic | 30.0% |
| GTTGAATCAATGTTCAACAT+TGG | - | chr5_3:9584639-9584658 | None:intergenic | 30.0% | |
| !! | GATTCAACTTTGAAACCAAA+AGG | + | chr5_3:9584651-9584670 | Msa0797430:CDS | 30.0% |
| ! | TGATTAAAAACCTTGCCTTT+TGG | - | chr5_3:9584669-9584688 | None:intergenic | 30.0% |
| ! | AAAGGCAAGGTTTTTAATCA+TGG | + | chr5_3:9584669-9584688 | Msa0797430:CDS | 30.0% |
| ! | AAGGCAAGGTTTTTAATCAT+GGG | + | chr5_3:9584670-9584689 | Msa0797430:CDS | 30.0% |
| GGAAATCTTTAACCTCAAAA+GGG | + | chr5_3:9584691-9584710 | Msa0797430:CDS | 30.0% | |
| GTCCTTAGAAAACCAAAAAA+AGG | + | chr5_3:9584713-9584732 | Msa0797430:CDS | 30.0% | |
| !!! | TCCCTTTTTTTGGTTTTCTA+AGG | - | chr5_3:9584718-9584737 | None:intergenic | 30.0% |
| !!! | AATTGAACCTTTTTCAAGTC+TGG | - | chr5_3:9584870-9584889 | None:intergenic | 30.0% |
| CATTTGGATATAGATGGATA+AGG | + | chr5_3:9584966-9584985 | Msa0797430:intron | 30.0% | |
| TCAAGAAAAAGTGAAGCTAT+TGG | + | chr5_3:9585029-9585048 | Msa0797430:CDS | 30.0% | |
| TATTGGAAGAAAAGAACCAA+AGG | + | chr5_3:9585046-9585065 | Msa0797430:CDS | 30.0% | |
| GTTAAATTGCAAGACAGCTA+TGG | - | chr5_3:9584182-9584201 | None:intergenic | 35.0% | |
| AAGATTGTTGCAGTGACATA+GGG | - | chr5_3:9584416-9584435 | None:intergenic | 35.0% | |
| AAAGATTGTTGCAGTGACAT+AGG | - | chr5_3:9584417-9584436 | None:intergenic | 35.0% | |
| !! | TTGGTCTTAAGTGTCTTTGT+AGG | - | chr5_3:9584519-9584538 | None:intergenic | 35.0% |
| !! | AACTTTGAAACCAAAAGGCA+AGG | + | chr5_3:9584656-9584675 | Msa0797430:CDS | 35.0% |
| GGGAAATCTTTAACCTCAAA+AGG | + | chr5_3:9584690-9584709 | Msa0797430:CDS | 35.0% | |
| ! | CTCTCTTGAATATTGCGTTT+TGG | - | chr5_3:9584741-9584760 | None:intergenic | 35.0% |
| TATGTGATCTTGAGCATTTC+TGG | - | chr5_3:9584784-9584803 | None:intergenic | 35.0% | |
| ATGGATAAGGCTTCTGTATT+AGG | + | chr5_3:9584979-9584998 | Msa0797430:CDS | 35.0% | |
| ! | TTTCTTGAAGCTGTTTCACA+TGG | - | chr5_3:9585017-9585036 | None:intergenic | 35.0% |
| CACTCTTATGTTTCTCACAA+TGG | - | chr5_3:9585260-9585279 | None:intergenic | 35.0% | |
| GATGAAGATTCTCTATCTCT+TGG | - | chr5_3:9585299-9585318 | None:intergenic | 35.0% | |
| ! | AGTAGTTGTGCATTGCTATT+TGG | + | chr5_3:9585330-9585349 | Msa0797430:CDS | 35.0% |
| GTTAAATTGCAAGACAGCTA+TGG | - | chr5_3:9584182-9584201 | None:intergenic | 35.0% | |
| AAGATTGTTGCAGTGACATA+GGG | - | chr5_3:9584416-9584435 | None:intergenic | 35.0% | |
| AAAGATTGTTGCAGTGACAT+AGG | - | chr5_3:9584417-9584436 | None:intergenic | 35.0% | |
| !! | TTGGTCTTAAGTGTCTTTGT+AGG | - | chr5_3:9584519-9584538 | None:intergenic | 35.0% |
| !! | AACTTTGAAACCAAAAGGCA+AGG | + | chr5_3:9584656-9584675 | Msa0797430:CDS | 35.0% |
| GGGAAATCTTTAACCTCAAA+AGG | + | chr5_3:9584690-9584709 | Msa0797430:CDS | 35.0% | |
| ! | CTCTCTTGAATATTGCGTTT+TGG | - | chr5_3:9584741-9584760 | None:intergenic | 35.0% |
| TATGTGATCTTGAGCATTTC+TGG | - | chr5_3:9584784-9584803 | None:intergenic | 35.0% | |
| ATGGATAAGGCTTCTGTATT+AGG | + | chr5_3:9584979-9584998 | Msa0797430:CDS | 35.0% | |
| ! | TTTCTTGAAGCTGTTTCACA+TGG | - | chr5_3:9585017-9585036 | None:intergenic | 35.0% |
| CACTCTTATGTTTCTCACAA+TGG | - | chr5_3:9585260-9585279 | None:intergenic | 35.0% | |
| GATGAAGATTCTCTATCTCT+TGG | - | chr5_3:9585299-9585318 | None:intergenic | 35.0% | |
| ! | AGTAGTTGTGCATTGCTATT+TGG | + | chr5_3:9585330-9585349 | Msa0797430:CDS | 35.0% |
| TGACATCAAACGATGAGTCA+TGG | + | chr5_3:9584230-9584249 | Msa0797430:CDS | 40.0% | |
| !! | GACAAGTTGGTTGTGTGATT+TGG | + | chr5_3:9584252-9584271 | Msa0797430:CDS | 40.0% |
| AAACTCTTGTGACTTTCCAC+AGG | + | chr5_3:9584350-9584369 | Msa0797430:intron | 40.0% | |
| !! | TTGTAATCTTCTGGTTCCTG+TGG | - | chr5_3:9584369-9584388 | None:intergenic | 40.0% |
| AGATTGTTGCAGTGACATAG+GGG | - | chr5_3:9584415-9584434 | None:intergenic | 40.0% | |
| TCACTGCAACAATCTTTCTC+TGG | + | chr5_3:9584420-9584439 | Msa0797430:CDS | 40.0% | |
| GGAATTGCTCATAGTGTTTG+AGG | - | chr5_3:9584469-9584488 | None:intergenic | 40.0% | |
| AACACTATGAGCAATTCCTC+AGG | + | chr5_3:9584471-9584490 | Msa0797430:CDS | 40.0% | |
| AAAGCAGTTAACATCTCCTG+AGG | - | chr5_3:9584490-9584509 | None:intergenic | 40.0% | |
| ! | GAGATGTTAACTGCTTTGAG+AGG | + | chr5_3:9584493-9584512 | Msa0797430:CDS | 40.0% |
| AAGACCAACCCTTCAAACAT+AGG | + | chr5_3:9584531-9584550 | Msa0797430:CDS | 40.0% | |
| AGACCAACCCTTCAAACATA+GGG | + | chr5_3:9584532-9584551 | Msa0797430:CDS | 40.0% | |
| !! | AAGGGTACCCTATGTTTGAA+GGG | - | chr5_3:9584542-9584561 | None:intergenic | 40.0% |
| !! | GTTTTCTAAGGACCCTTTTG+AGG | - | chr5_3:9584706-9584725 | None:intergenic | 40.0% |
| !! | TGCGTTTTGGTCCCTTTTTT+TGG | - | chr5_3:9584728-9584747 | None:intergenic | 40.0% |
| ACTCCTTCCAGACTTGAAAA+AGG | + | chr5_3:9584860-9584879 | Msa0797430:CDS | 40.0% | |
| !!! | GAACCTTTTTCAAGTCTGGA+AGG | - | chr5_3:9584866-9584885 | None:intergenic | 40.0% |
| CAGATTCTACGTTGTTCCTT+TGG | - | chr5_3:9585065-9585084 | None:intergenic | 40.0% | |
| AAGGAACAACGTAGAATCTG+TGG | + | chr5_3:9585065-9585084 | Msa0797430:CDS | 40.0% | |
| TCAGACACCTCATCAAATTC+TGG | + | chr5_3:9585132-9585151 | Msa0797430:CDS | 40.0% | |
| ! | ACCTCATCAAATTCTGGCTA+TGG | + | chr5_3:9585138-9585157 | Msa0797430:CDS | 40.0% |
| ACCATAGCCAGAATTTGATG+AGG | - | chr5_3:9585142-9585161 | None:intergenic | 40.0% | |
| ! | GACGGTTATGTCAAGTTTTG+TGG | - | chr5_3:9585358-9585377 | None:intergenic | 40.0% |
| TGACATCAAACGATGAGTCA+TGG | + | chr5_3:9584230-9584249 | Msa0797430:CDS | 40.0% | |
| !! | GACAAGTTGGTTGTGTGATT+TGG | + | chr5_3:9584252-9584271 | Msa0797430:CDS | 40.0% |
| AAACTCTTGTGACTTTCCAC+AGG | + | chr5_3:9584350-9584369 | Msa0797430:intron | 40.0% | |
| !! | TTGTAATCTTCTGGTTCCTG+TGG | - | chr5_3:9584369-9584388 | None:intergenic | 40.0% |
| AGATTGTTGCAGTGACATAG+GGG | - | chr5_3:9584415-9584434 | None:intergenic | 40.0% | |
| TCACTGCAACAATCTTTCTC+TGG | + | chr5_3:9584420-9584439 | Msa0797430:CDS | 40.0% | |
| GGAATTGCTCATAGTGTTTG+AGG | - | chr5_3:9584469-9584488 | None:intergenic | 40.0% | |
| AACACTATGAGCAATTCCTC+AGG | + | chr5_3:9584471-9584490 | Msa0797430:CDS | 40.0% | |
| AAAGCAGTTAACATCTCCTG+AGG | - | chr5_3:9584490-9584509 | None:intergenic | 40.0% | |
| ! | GAGATGTTAACTGCTTTGAG+AGG | + | chr5_3:9584493-9584512 | Msa0797430:CDS | 40.0% |
| AAGACCAACCCTTCAAACAT+AGG | + | chr5_3:9584531-9584550 | Msa0797430:CDS | 40.0% | |
| AGACCAACCCTTCAAACATA+GGG | + | chr5_3:9584532-9584551 | Msa0797430:CDS | 40.0% | |
| !! | AAGGGTACCCTATGTTTGAA+GGG | - | chr5_3:9584542-9584561 | None:intergenic | 40.0% |
| !! | GTTTTCTAAGGACCCTTTTG+AGG | - | chr5_3:9584706-9584725 | None:intergenic | 40.0% |
| !! | TGCGTTTTGGTCCCTTTTTT+TGG | - | chr5_3:9584728-9584747 | None:intergenic | 40.0% |
| ACTCCTTCCAGACTTGAAAA+AGG | + | chr5_3:9584860-9584879 | Msa0797430:CDS | 40.0% | |
| !!! | GAACCTTTTTCAAGTCTGGA+AGG | - | chr5_3:9584866-9584885 | None:intergenic | 40.0% |
| CAGATTCTACGTTGTTCCTT+TGG | - | chr5_3:9585065-9585084 | None:intergenic | 40.0% | |
| AAGGAACAACGTAGAATCTG+TGG | + | chr5_3:9585065-9585084 | Msa0797430:CDS | 40.0% | |
| TCAGACACCTCATCAAATTC+TGG | + | chr5_3:9585132-9585151 | Msa0797430:CDS | 40.0% | |
| ! | ACCTCATCAAATTCTGGCTA+TGG | + | chr5_3:9585138-9585157 | Msa0797430:CDS | 40.0% |
| ACCATAGCCAGAATTTGATG+AGG | - | chr5_3:9585142-9585161 | None:intergenic | 40.0% | |
| ! | GACGGTTATGTCAAGTTTTG+TGG | - | chr5_3:9585358-9585377 | None:intergenic | 40.0% |
| ACGATGAGTCATGGACAAGT+TGG | + | chr5_3:9584239-9584258 | Msa0797430:CDS | 45.0% | |
| CTGCAACAATCTTTCTCTGG+TGG | + | chr5_3:9584423-9584442 | Msa0797430:CDS | 45.0% | |
| TTGAGGTTGTGTGAGAGCAA+TGG | - | chr5_3:9584452-9584471 | None:intergenic | 45.0% | |
| GTACCCTATGTTTGAAGGGT+TGG | - | chr5_3:9584538-9584557 | None:intergenic | 45.0% | |
| !! | GAAGGGTACCCTATGTTTGA+AGG | - | chr5_3:9584543-9584562 | None:intergenic | 45.0% |
| CTCACACCTCAAAACCAAGT+AGG | + | chr5_3:9585181-9585200 | Msa0797430:CDS | 45.0% | |
| !!! | CAGTGACCTACTTGGTTTTG+AGG | - | chr5_3:9585190-9585209 | None:intergenic | 45.0% |
| TGACATAACCGTCATTGCTG+AGG | + | chr5_3:9585365-9585384 | Msa0797430:CDS | 45.0% | |
| ACGATGAGTCATGGACAAGT+TGG | + | chr5_3:9584239-9584258 | Msa0797430:CDS | 45.0% | |
| CTGCAACAATCTTTCTCTGG+TGG | + | chr5_3:9584423-9584442 | Msa0797430:CDS | 45.0% | |
| TTGAGGTTGTGTGAGAGCAA+TGG | - | chr5_3:9584452-9584471 | None:intergenic | 45.0% | |
| GTACCCTATGTTTGAAGGGT+TGG | - | chr5_3:9584538-9584557 | None:intergenic | 45.0% | |
| !! | GAAGGGTACCCTATGTTTGA+AGG | - | chr5_3:9584543-9584562 | None:intergenic | 45.0% |
| CTCACACCTCAAAACCAAGT+AGG | + | chr5_3:9585181-9585200 | Msa0797430:CDS | 45.0% | |
| !!! | CAGTGACCTACTTGGTTTTG+AGG | - | chr5_3:9585190-9585209 | None:intergenic | 45.0% |
| TGACATAACCGTCATTGCTG+AGG | + | chr5_3:9585365-9585384 | Msa0797430:CDS | 45.0% | |
| ACTTCAGGCAGTGACCTACT+TGG | - | chr5_3:9585198-9585217 | None:intergenic | 50.0% | |
| TAGGTCACTGCCTGAAGTTG+AGG | + | chr5_3:9585200-9585219 | Msa0797430:CDS | 50.0% | |
| GACACTCTTGCCTCAACTTC+AGG | - | chr5_3:9585213-9585232 | None:intergenic | 50.0% | |
| CCGTCATTGCTGAGGTATGA+AGG | + | chr5_3:9585373-9585392 | Msa0797430:CDS | 50.0% | |
| ACTTCAGGCAGTGACCTACT+TGG | - | chr5_3:9585198-9585217 | None:intergenic | 50.0% | |
| TAGGTCACTGCCTGAAGTTG+AGG | + | chr5_3:9585200-9585219 | Msa0797430:CDS | 50.0% | |
| GACACTCTTGCCTCAACTTC+AGG | - | chr5_3:9585213-9585232 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 9584167 | 9585392 | 9584167 | ID=Msa0797430;Name=Msa0797430 |
| chr5_3 | mRNA | 9584167 | 9585392 | 9584167 | ID=Msa0797430-mRNA-1;Parent=Msa0797430;Name=Msa0797430-mRNA-1;_AED=0.06;_eAED=0.06;_QI=62|1|0.66|1|1|1|3|0|322 |
| chr5_3 | exon | 9584167 | 9584273 | 9584167 | ID=Msa0797430-mRNA-1:exon:4113;Parent=Msa0797430-mRNA-1 |
| chr5_3 | exon | 9584372 | 9584881 | 9584372 | ID=Msa0797430-mRNA-1:exon:4114;Parent=Msa0797430-mRNA-1 |
| chr5_3 | exon | 9584979 | 9585392 | 9584979 | ID=Msa0797430-mRNA-1:exon:4115;Parent=Msa0797430-mRNA-1 |
| chr5_3 | five_prime_UTR | 9584167 | 9584228 | 9584167 | ID=Msa0797430-mRNA-1:five_prime_utr;Parent=Msa0797430-mRNA-1 |
| chr5_3 | CDS | 9584229 | 9584273 | 9584229 | ID=Msa0797430-mRNA-1:cds;Parent=Msa0797430-mRNA-1 |
| chr5_3 | CDS | 9584372 | 9584881 | 9584372 | ID=Msa0797430-mRNA-1:cds;Parent=Msa0797430-mRNA-1 |
| chr5_3 | CDS | 9584979 | 9585392 | 9584979 | ID=Msa0797430-mRNA-1:cds;Parent=Msa0797430-mRNA-1 |
| Gene Sequence |
| Protein sequence |
