Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0754960 | XP_024639117.1 | 84.043 | 188 | 22 | 3 | 1 | 184 | 1 | 184 | 1.14e-100 | 298 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0754960 | sp|Q84R94|TI10A_ORYSJ | 43.243 | 148 | 63 | 5 | 36 | 168 | 73 | 214 | 2.36e-28 | 108 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0754960 | A0A396HSW0 | 89.130 | 138 | 14 | 1 | 32 | 168 | 7 | 144 | 4.13e-86 | 259 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0754960 | TF | Tify |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0754960 | Msa0834360 | 0.904375 | 1.310345e-79 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0754960 | MtrunA17_Chr5g0399851 | 89.130 | 138 | 14 | 1 | 32 | 168 | 7 | 144 | 7.95e-90 | 259 |
| Msa0754960 | MtrunA17_Chr5g0399861 | 72.131 | 183 | 41 | 5 | 1 | 182 | 1 | 174 | 1.02e-89 | 260 |
| Msa0754960 | MtrunA17_Chr5g0399881 | 68.280 | 186 | 43 | 6 | 1 | 184 | 1 | 172 | 4.67e-81 | 238 |
| Msa0754960 | MtrunA17_Chr2g0301131 | 45.732 | 164 | 45 | 7 | 27 | 163 | 99 | 245 | 7.96e-35 | 122 |
| Msa0754960 | MtrunA17_Chr4g0070271 | 35.115 | 131 | 61 | 3 | 40 | 169 | 95 | 202 | 1.51e-17 | 76.6 |
| Msa0754960 | MtrunA17_Chr4g0069721 | 35.135 | 111 | 58 | 2 | 46 | 144 | 45 | 153 | 8.37e-14 | 66.2 |
| Msa0754960 | MtrunA17_Chr2g0302041 | 32.787 | 122 | 70 | 4 | 42 | 152 | 54 | 174 | 1.58e-13 | 65.9 |
| Msa0754960 | MtrunA17_Chr8g0344481 | 28.758 | 153 | 83 | 4 | 34 | 176 | 93 | 229 | 5.60e-11 | 59.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0754960 | AT1G19180.2 | 43.382 | 136 | 65 | 5 | 39 | 166 | 53 | 184 | 3.04e-27 | 102 |
| Msa0754960 | AT1G19180.1 | 43.382 | 136 | 65 | 5 | 39 | 166 | 119 | 250 | 1.19e-26 | 102 |
| Msa0754960 | AT1G19180.3 | 43.382 | 136 | 65 | 5 | 39 | 166 | 119 | 250 | 1.19e-26 | 102 |
| Msa0754960 | AT1G74950.1 | 40.580 | 138 | 68 | 5 | 39 | 164 | 112 | 247 | 4.63e-24 | 95.1 |
| Msa0754960 | AT1G74950.2 | 40.909 | 110 | 54 | 3 | 39 | 137 | 112 | 221 | 2.02e-18 | 79.7 |
| Msa0754960 | AT5G20900.1 | 34.234 | 111 | 65 | 1 | 46 | 148 | 57 | 167 | 1.93e-15 | 71.2 |
| Msa0754960 | AT1G72450.1 | 36.842 | 114 | 61 | 3 | 41 | 146 | 101 | 211 | 1.67e-13 | 67.4 |
| Msa0754960 | AT1G17380.1 | 29.452 | 146 | 92 | 2 | 11 | 146 | 63 | 207 | 4.50e-12 | 63.2 |
| Msa0754960 | AT1G17380.2 | 29.452 | 146 | 92 | 2 | 11 | 146 | 34 | 178 | 6.53e-12 | 62.4 |
| Msa0754960 | AT1G70700.2 | 35.238 | 105 | 61 | 3 | 46 | 145 | 119 | 221 | 1.58e-11 | 61.6 |
Find 53 sgRNAs with CRISPR-Local
Find 122 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTACAAGAGGTTTCAAATTT+AGG | 0.093614 | 5_2:+8708477 | Msa0754960:CDS |
| TTACACTTCTTAATTAATTA+TGG | 0.165503 | 5_2:-8710671 | None:intergenic |
| CATGACATGAATTCATTAAT+TGG | 0.189235 | 5_2:-8710435 | None:intergenic |
| GTACCCACACCTGTTATTTA+TGG | 0.191322 | 5_2:+8708882 | Msa0754960:CDS |
| ATTCATTAATTGGCTTATTA+AGG | 0.221545 | 5_2:-8710425 | None:intergenic |
| TTAATTAAGAAGTGTAATTC+TGG | 0.268982 | 5_2:+8710677 | Msa0754960:three_prime_UTR |
| AGCTTCACTTCATCGGTTCT+TGG | 0.292747 | 5_2:+8709030 | Msa0754960:CDS |
| TATGAACTGGATCAATCATT+AGG | 0.302707 | 5_2:+8710554 | Msa0754960:three_prime_UTR |
| GTTGGGTTACTTGTTTGATA+TGG | 0.309920 | 5_2:-8710399 | None:intergenic |
| TACACTTCTTAATTAATTAT+GGG | 0.311234 | 5_2:-8710670 | None:intergenic |
| TTTCAAATTTAGGAAATTCC+AGG | 0.358166 | 5_2:+8708487 | Msa0754960:CDS |
| GATATAAAGCTTTGTGTTGA+TGG | 0.362339 | 5_2:-8710793 | None:intergenic |
| TTGAGAGTTAGTAGTTCCTT+TGG | 0.375053 | 5_2:-8708772 | None:intergenic |
| ATTGGCTTATTAAGGTTTGT+TGG | 0.391845 | 5_2:-8710417 | None:intergenic |
| AGTGAAGCTTTCCTTGTCAT+TGG | 0.396031 | 5_2:-8709016 | None:intergenic |
| TTGGCTTATTAAGGTTTGTT+GGG | 0.406880 | 5_2:-8710416 | None:intergenic |
| TGGAGCTACATTCTGATTTG+TGG | 0.411283 | 5_2:-8710488 | None:intergenic |
| AACTATATATATCTATGAAC+TGG | 0.419301 | 5_2:+8710541 | Msa0754960:three_prime_UTR |
| TTGTTTGAGGAGGGTGAGAG+TGG | 0.423859 | 5_2:-8708330 | None:intergenic |
| ATGAACTGGATCAATCATTA+GGG | 0.427313 | 5_2:+8710555 | Msa0754960:three_prime_UTR |
| GAATTTCTAGCAAGAAATGA+TGG | 0.446507 | 5_2:-8708840 | None:intergenic |
| CAAATGACAATCTTCTATGA+TGG | 0.453411 | 5_2:+8708687 | Msa0754960:CDS |
| TTCATCGGTTCTTGGAGAAA+AGG | 0.463618 | 5_2:+8709038 | Msa0754960:CDS |
| CATTCTGATTTGTGGTCTTG+TGG | 0.464643 | 5_2:-8710480 | None:intergenic |
| GAAGAATAGTTGTTTGAGGA+GGG | 0.475715 | 5_2:-8708339 | None:intergenic |
| GATTGAAGAATAGTTGTTTG+AGG | 0.479225 | 5_2:-8708343 | None:intergenic |
| AGAGTTAGTAGTTCCTTTGG+AGG | 0.509053 | 5_2:-8708769 | None:intergenic |
| TTGTGGTCTTGTGGTGATTG+TGG | 0.515403 | 5_2:-8710471 | None:intergenic |
| CAAGGAAAGCTTCACTTCAT+CGG | 0.526583 | 5_2:+8709023 | Msa0754960:CDS |
| ATTCATGTCATGGCTCTCCT+TGG | 0.527756 | 5_2:+8710446 | Msa0754960:CDS |
| AAATGACAATCTTCTATGAT+GGG | 0.538308 | 5_2:+8708688 | Msa0754960:CDS |
| AATGAAGGCTAATATTAAGA+AGG | 0.540403 | 5_2:+8708647 | Msa0754960:CDS |
| GGGTACTTGAAGAGAATTGT+TGG | 0.556411 | 5_2:-8708865 | None:intergenic |
| GAAAATTCAACATAGGTGTA+CGG | 0.557738 | 5_2:-8708431 | None:intergenic |
| AAGTTAAAGAAAGACAGAGC+TGG | 0.561002 | 5_2:-8710508 | None:intergenic |
| GGCTAATATTAAGAAGGAAG+AGG | 0.566182 | 5_2:+8708653 | Msa0754960:CDS |
| TCTTGGAGAAAAGGAAGGAT+AGG | 0.567398 | 5_2:+8709047 | Msa0754960:CDS |
| TGAAGAATAGTTGTTTGAGG+AGG | 0.569497 | 5_2:-8708340 | None:intergenic |
| TTACCATAAATAACAGGTGT+GGG | 0.570307 | 5_2:-8708885 | None:intergenic |
| AAGCATAGTTGTTATTGTTG+TGG | 0.572885 | 5_2:-8708797 | None:intergenic |
| ACGTGTTGAAAATTCAACAT+AGG | 0.573945 | 5_2:-8708438 | None:intergenic |
| TTGTGGTGATTGTGGTGCCA+AGG | 0.574286 | 5_2:-8710463 | None:intergenic |
| TCCTCATCTCTCTCTACAAG+AGG | 0.582418 | 5_2:+8708464 | Msa0754960:CDS |
| TCGGTTCTTGGAGAAAAGGA+AGG | 0.585705 | 5_2:+8709042 | Msa0754960:CDS |
| TTTACCATAAATAACAGGTG+TGG | 0.589296 | 5_2:-8708886 | None:intergenic |
| CAATTAATGAATTCATGTCA+TGG | 0.607012 | 5_2:+8710436 | Msa0754960:CDS |
| TGTTGATGGAAGAATTGACA+TGG | 0.629229 | 5_2:-8710779 | None:intergenic |
| CTAAATGTTCGTGAATGTTG+TGG | 0.634244 | 5_2:+8710631 | Msa0754960:three_prime_UTR |
| AATTTCTAGCAAGAAATGAT+GGG | 0.637681 | 5_2:-8708839 | None:intergenic |
| ACCTCTTGTAGAGAGAGATG+AGG | 0.644344 | 5_2:-8708465 | None:intergenic |
| TTCTAGCAAGAAATGATGGG+TGG | 0.652275 | 5_2:-8708836 | None:intergenic |
| TGCATATACAGTGAATGTAG+AGG | 0.666288 | 5_2:-8710703 | None:intergenic |
| ATACAGATTTACCAATGACA+AGG | 0.684860 | 5_2:+8709005 | Msa0754960:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTATGGTAAAAAAAATAAT+TGG | + | chr5_2:8708898-8708917 | Msa0754960:intron | 10.0% |
| !! | TTTGATTGTAAAAAAAATAA+GGG | + | chr5_2:8709124-8709143 | Msa0754960:intron | 10.0% |
| !!! | GATTTAATTCTTTTATTTTT+TGG | - | chr5_2:8709430-8709449 | None:intergenic | 10.0% |
| !!! | AATATGAATTTTTATGTTTT+TGG | - | chr5_2:8709684-8709703 | None:intergenic | 10.0% |
| !! | TAAAAAAAATCTAATTTCTT+TGG | + | chr5_2:8709719-8709738 | Msa0754960:intron | 10.0% |
| !! | AAAAAAAATCTAATTTCTTT+GGG | + | chr5_2:8709720-8709739 | Msa0754960:intron | 10.0% |
| !!! | TTTTTTTTACCATAAATAAC+AGG | - | chr5_2:8708894-8708913 | None:intergenic | 15.0% |
| !! | GTTTGATTGTAAAAAAAATA+AGG | + | chr5_2:8709123-8709142 | Msa0754960:intron | 15.0% |
| !!! | AAGTGTGATTTTAATTTATA+GGG | - | chr5_2:8709198-8709217 | None:intergenic | 15.0% |
| !!! | AAAGTGTGATTTTAATTTAT+AGG | - | chr5_2:8709199-8709218 | None:intergenic | 15.0% |
| !! | ACAAAATTCTGAATATTTAT+AGG | + | chr5_2:8709385-8709404 | Msa0754960:intron | 15.0% |
| !! | CAAAATTCTGAATATTTATA+GGG | + | chr5_2:8709386-8709405 | Msa0754960:intron | 15.0% |
| !!! | AATTTGACAAAAATTTTAGA+AGG | - | chr5_2:8709482-8709501 | None:intergenic | 15.0% |
| !!! | AAGTTTTTCATCATTTATTT+TGG | + | chr5_2:8709513-8709532 | Msa0754960:intron | 15.0% |
| !!! | TTTTGGGTTTAATATATTTT+TGG | - | chr5_2:8709889-8709908 | None:intergenic | 15.0% |
| !!! | TTATTTCCTATTTCATTTTT+GGG | - | chr5_2:8709905-8709924 | None:intergenic | 15.0% |
| !!! | ATTATTTCCTATTTCATTTT+TGG | - | chr5_2:8709906-8709925 | None:intergenic | 15.0% |
| !! | ATTATCAAATAAAAGTTCAT+CGG | - | chr5_2:8709943-8709962 | None:intergenic | 15.0% |
| !! | CAAAAATCATAATAGAAAAA+AGG | - | chr5_2:8710321-8710340 | None:intergenic | 15.0% |
| !! | TACACTTCTTAATTAATTAT+GGG | - | chr5_2:8710673-8710692 | None:intergenic | 15.0% |
| !! | TTACACTTCTTAATTAATTA+TGG | - | chr5_2:8710674-8710693 | None:intergenic | 15.0% |
| !!! | AATTTTCCTTAAGCATTTTA+AGG | + | chr5_2:8709232-8709251 | Msa0754960:intron | 20.0% |
| !!! | ATGTTGATGGAAAATTTTAT+AGG | + | chr5_2:8709325-8709344 | Msa0754960:intron | 20.0% |
| !!! | TGTTGATGGAAAATTTTATA+GGG | + | chr5_2:8709326-8709345 | Msa0754960:intron | 20.0% |
| !!! | AAAGTGTGATTTTATTTTGT+AGG | + | chr5_2:8709354-8709373 | Msa0754960:intron | 20.0% |
| !!! | AAGTGTGATTTTATTTTGTA+GGG | + | chr5_2:8709355-8709374 | Msa0754960:intron | 20.0% |
| !!! | AATGACATTTTTTCAGAAAT+AGG | - | chr5_2:8709767-8709786 | None:intergenic | 20.0% |
| !! | ATTAAACCCAAAAATGAAAT+AGG | + | chr5_2:8709896-8709915 | Msa0754960:intron | 20.0% |
| !!! | TATTTGATAATTGATAGACT+AGG | + | chr5_2:8709952-8709971 | Msa0754960:intron | 20.0% |
| !! | CAAACATATCAGTAAAAATA+TGG | - | chr5_2:8710348-8710367 | None:intergenic | 20.0% |
| !!! | ATTCATTAATTGGCTTATTA+AGG | - | chr5_2:8710428-8710447 | None:intergenic | 20.0% |
| !! | AACTATATATATCTATGAAC+TGG | + | chr5_2:8710541-8710560 | Msa0754960:three_prime_UTR | 20.0% |
| !!! | TTAATTAAGAAGTGTAATTC+TGG | + | chr5_2:8710677-8710696 | Msa0754960:three_prime_UTR | 20.0% |
| ! | TTTCAAATTTAGGAAATTCC+AGG | + | chr5_2:8708487-8708506 | Msa0754960:CDS | 25.0% |
| ! | AGTAGCTAAAAAAATGTTGA+TGG | - | chr5_2:8708547-8708566 | None:intergenic | 25.0% |
| ! | CATGATTCATGTTTATAACA+TGG | + | chr5_2:8708579-8708598 | Msa0754960:intron | 25.0% |
| ! | AATGAAGGCTAATATTAAGA+AGG | + | chr5_2:8708647-8708666 | Msa0754960:CDS | 25.0% |
| ! | AAATGACAATCTTCTATGAT+GGG | + | chr5_2:8708688-8708707 | Msa0754960:CDS | 25.0% |
| !!! | AATTTCTAGCAAGAAATGAT+GGG | - | chr5_2:8708842-8708861 | None:intergenic | 25.0% |
| ! | TAATTGGATATCTATTTGAG+TGG | + | chr5_2:8708914-8708933 | Msa0754960:intron | 25.0% |
| !! | TCTTATTTGTTAGAAAGATC+TGG | - | chr5_2:8709081-8709100 | None:intergenic | 25.0% |
| ! | TACAATCAAACAGTAATTAG+TGG | - | chr5_2:8709114-8709133 | None:intergenic | 25.0% |
| ! | CAAAACTGTGAATATTTACA+GGG | - | chr5_2:8709167-8709186 | None:intergenic | 25.0% |
| ! | ACAAAACTGTGAATATTTAC+AGG | - | chr5_2:8709168-8709187 | None:intergenic | 25.0% |
| ! | TTTAGTCCTTAAAATGCTTA+AGG | - | chr5_2:8709241-8709260 | None:intergenic | 25.0% |
| !! | TGCTGATGGAAAAATTTTAT+AGG | + | chr5_2:8709263-8709282 | Msa0754960:intron | 25.0% |
| !! | GCTGATGGAAAAATTTTATA+GGG | + | chr5_2:8709264-8709283 | Msa0754960:intron | 25.0% |
| !! | TGCTGATGGAAAATTTTATA+AGG | + | chr5_2:8709295-8709314 | Msa0754960:intron | 25.0% |
| ! | ATAAGGACTAAAAATGTTGA+TGG | + | chr5_2:8709312-8709331 | Msa0754960:intron | 25.0% |
| ! | GAGTTGAATAAAAGTCATTA+AGG | - | chr5_2:8709540-8709559 | None:intergenic | 25.0% |
| !! | GTTAATTCTGAAAACTTAAG+AGG | + | chr5_2:8709979-8709998 | Msa0754960:intron | 25.0% |
| !! | TTCAATACTTTTGCAAAAGA+AGG | - | chr5_2:8710058-8710077 | None:intergenic | 25.0% |
| !!! | TTTGCAAAAGTATTGAATCT+CGG | + | chr5_2:8710061-8710080 | Msa0754960:intron | 25.0% |
| ! | ATTATCTGACTTTCAATCAA+TGG | - | chr5_2:8710189-8710208 | None:intergenic | 25.0% |
| ! | CATGACATGAATTCATTAAT+TGG | - | chr5_2:8710438-8710457 | None:intergenic | 25.0% |
| ! | CAATTAATGAATTCATGTCA+TGG | + | chr5_2:8710436-8710455 | Msa0754960:CDS | 25.0% |
| GATTGAAGAATAGTTGTTTG+AGG | - | chr5_2:8708346-8708365 | None:intergenic | 30.0% | |
| !!! | TGTTTTGTGCTTTTTTGGTA+CGG | - | chr5_2:8708395-8708414 | None:intergenic | 30.0% |
| !! | CATGATGTTTTGTGCTTTTT+TGG | - | chr5_2:8708400-8708419 | None:intergenic | 30.0% |
| GAAAATTCAACATAGGTGTA+CGG | - | chr5_2:8708434-8708453 | None:intergenic | 30.0% | |
| ACGTGTTGAAAATTCAACAT+AGG | - | chr5_2:8708441-8708460 | None:intergenic | 30.0% | |
| CTACAAGAGGTTTCAAATTT+AGG | + | chr5_2:8708477-8708496 | Msa0754960:CDS | 30.0% | |
| !! | GTTTTATTACAGAGCAATGA+AGG | + | chr5_2:8708632-8708651 | Msa0754960:intron | 30.0% |
| CAAATGACAATCTTCTATGA+TGG | + | chr5_2:8708687-8708706 | Msa0754960:CDS | 30.0% | |
| TGAAAAAGTCAAGGACATTA+TGG | + | chr5_2:8708740-8708759 | Msa0754960:CDS | 30.0% | |
| ! | AAGCATAGTTGTTATTGTTG+TGG | - | chr5_2:8708800-8708819 | None:intergenic | 30.0% |
| !! | GAATTTCTAGCAAGAAATGA+TGG | - | chr5_2:8708843-8708862 | None:intergenic | 30.0% |
| TTACCATAAATAACAGGTGT+GGG | - | chr5_2:8708888-8708907 | None:intergenic | 30.0% | |
| TTTACCATAAATAACAGGTG+TGG | - | chr5_2:8708889-8708908 | None:intergenic | 30.0% | |
| ATACAGATTTACCAATGACA+AGG | + | chr5_2:8709005-8709024 | Msa0754960:intron | 30.0% | |
| TCAAACAGTAATTAGTGGTT+AGG | - | chr5_2:8709109-8709128 | None:intergenic | 30.0% | |
| TGCTTAAGGAAAATTTCACA+GGG | - | chr5_2:8709227-8709246 | None:intergenic | 30.0% | |
| ATGCTTAAGGAAAATTTCAC+AGG | - | chr5_2:8709228-8709247 | None:intergenic | 30.0% | |
| TTAAGGACTAAAAATGCTGA+TGG | + | chr5_2:8709249-8709268 | Msa0754960:intron | 30.0% | |
| ! | CATGAGTTGACTAAAAAGTA+AGG | + | chr5_2:8709806-8709825 | Msa0754960:intron | 30.0% |
| TCAACAATTCCTTTAGACAT+AGG | + | chr5_2:8710214-8710233 | Msa0754960:intron | 30.0% | |
| ATTTCGGAACAAGAAGTAAA+AGG | - | chr5_2:8710273-8710292 | None:intergenic | 30.0% | |
| ! | TTGGCTTATTAAGGTTTGTT+GGG | - | chr5_2:8710419-8710438 | None:intergenic | 30.0% |
| ! | ATTGGCTTATTAAGGTTTGT+TGG | - | chr5_2:8710420-8710439 | None:intergenic | 30.0% |
| TATGAACTGGATCAATCATT+AGG | + | chr5_2:8710554-8710573 | Msa0754960:three_prime_UTR | 30.0% | |
| ATGAACTGGATCAATCATTA+GGG | + | chr5_2:8710555-8710574 | Msa0754960:three_prime_UTR | 30.0% | |
| ! | TTTCTCTATTTTGTAGGACT+TGG | + | chr5_2:8710580-8710599 | Msa0754960:three_prime_UTR | 30.0% |
| !! | AGACATATTTTTGTGAGCAT+AGG | - | chr5_2:8710613-8710632 | None:intergenic | 30.0% |
| GAAGAATAGTTGTTTGAGGA+GGG | - | chr5_2:8708342-8708361 | None:intergenic | 35.0% | |
| TGAAGAATAGTTGTTTGAGG+AGG | - | chr5_2:8708343-8708362 | None:intergenic | 35.0% | |
| GGCTAATATTAAGAAGGAAG+AGG | + | chr5_2:8708653-8708672 | Msa0754960:CDS | 35.0% | |
| TATTCCAGCTGAAAAAGTCA+AGG | + | chr5_2:8708731-8708750 | Msa0754960:CDS | 35.0% | |
| ! | ATTATGGTCTTTTCCTCCAA+AGG | + | chr5_2:8708756-8708775 | Msa0754960:CDS | 35.0% |
| TTGAGAGTTAGTAGTTCCTT+TGG | - | chr5_2:8708775-8708794 | None:intergenic | 35.0% | |
| ! | ATTTGTTAGAAAGATCTGGC+TGG | - | chr5_2:8709077-8709096 | None:intergenic | 35.0% |
| ATAGGGACTAAAAATGCTGA+TGG | + | chr5_2:8709281-8709300 | Msa0754960:intron | 35.0% | |
| CATGCATTTCCTATGTCTAA+AGG | - | chr5_2:8710226-8710245 | None:intergenic | 35.0% | |
| TGACACGACTCAAACTATTT+CGG | - | chr5_2:8710289-8710308 | None:intergenic | 35.0% | |
| GTTGGGTTACTTGTTTGATA+TGG | - | chr5_2:8710402-8710421 | None:intergenic | 35.0% | |
| AAGTTAAAGAAAGACAGAGC+TGG | - | chr5_2:8710511-8710530 | None:intergenic | 35.0% | |
| !! | AGGGTGTTTCTCTATTTTGT+AGG | + | chr5_2:8710574-8710593 | Msa0754960:three_prime_UTR | 35.0% |
| CTAAATGTTCGTGAATGTTG+TGG | + | chr5_2:8710631-8710650 | Msa0754960:three_prime_UTR | 35.0% | |
| TGCATATACAGTGAATGTAG+AGG | - | chr5_2:8710706-8710725 | None:intergenic | 35.0% | |
| ! | TGTTGATGGAAGAATTGACA+TGG | - | chr5_2:8710782-8710801 | None:intergenic | 35.0% |
| GTAGCAAAAGAACATGTACC+TGG | - | chr5_2:8708508-8708527 | None:intergenic | 40.0% | |
| !!! | ATGTCCTTGACTTTTTCAGC+TGG | - | chr5_2:8708738-8708757 | None:intergenic | 40.0% |
| AGAGTTAGTAGTTCCTTTGG+AGG | - | chr5_2:8708772-8708791 | None:intergenic | 40.0% | |
| ! | TTCTAGCAAGAAATGATGGG+TGG | - | chr5_2:8708839-8708858 | None:intergenic | 40.0% |
| GGGTACTTGAAGAGAATTGT+TGG | - | chr5_2:8708868-8708887 | None:intergenic | 40.0% | |
| ! | GTACCCACACCTGTTATTTA+TGG | + | chr5_2:8708882-8708901 | Msa0754960:CDS | 40.0% |
| AGTGAAGCTTTCCTTGTCAT+TGG | - | chr5_2:8709019-8709038 | None:intergenic | 40.0% | |
| CAAGGAAAGCTTCACTTCAT+CGG | + | chr5_2:8709023-8709042 | Msa0754960:CDS | 40.0% | |
| !! | TTCATCGGTTCTTGGAGAAA+AGG | + | chr5_2:8709038-8709057 | Msa0754960:CDS | 40.0% |
| TCTTGGAGAAAAGGAAGGAT+AGG | + | chr5_2:8709047-8709066 | Msa0754960:CDS | 40.0% | |
| GCCATCAATTTGTGATCAGT+CGG | + | chr5_2:8710083-8710102 | Msa0754960:intron | 40.0% | |
| ! | CATTCTGATTTGTGGTCTTG+TGG | - | chr5_2:8710483-8710502 | None:intergenic | 40.0% |
| ! | TGGAGCTACATTCTGATTTG+TGG | - | chr5_2:8710491-8710510 | None:intergenic | 40.0% |
| TCCTCATCTCTCTCTACAAG+AGG | + | chr5_2:8708464-8708483 | Msa0754960:CDS | 45.0% | |
| ACCTCTTGTAGAGAGAGATG+AGG | - | chr5_2:8708468-8708487 | None:intergenic | 45.0% | |
| !! | AGCTTCACTTCATCGGTTCT+TGG | + | chr5_2:8709030-8709049 | Msa0754960:CDS | 45.0% |
| TCGGTTCTTGGAGAAAAGGA+AGG | + | chr5_2:8709042-8709061 | Msa0754960:CDS | 45.0% | |
| GCCGACTGATCACAAATTGA+TGG | - | chr5_2:8710087-8710106 | None:intergenic | 45.0% | |
| ATTCATGTCATGGCTCTCCT+TGG | + | chr5_2:8710446-8710465 | Msa0754960:CDS | 45.0% | |
| !! | TTGTGGTCTTGTGGTGATTG+TGG | - | chr5_2:8710474-8710493 | None:intergenic | 45.0% |
| !!! | ATTTAATTCTTTTATTTTTT+GGG | - | chr5_2:8709429-8709448 | None:intergenic | 5.0% |
| TTGTTTGAGGAGGGTGAGAG+TGG | - | chr5_2:8708333-8708352 | None:intergenic | 50.0% | |
| ! | TTGTGGTGATTGTGGTGCCA+AGG | - | chr5_2:8710466-8710485 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 8708309 | 8710814 | 8708309 | ID=Msa0754960;Name=Msa0754960 |
| chr5_2 | mRNA | 8708309 | 8710814 | 8708309 | ID=Msa0754960-mRNA-1;Parent=Msa0754960;Name=Msa0754960-mRNA-1;_AED=0.20;_eAED=0.20;_QI=108|1|1|1|1|1|4|287|184 |
| chr5_2 | exon | 8708309 | 8708508 | 8708309 | ID=Msa0754960-mRNA-1:exon:3954;Parent=Msa0754960-mRNA-1 |
| chr5_2 | exon | 8708644 | 8708903 | 8708644 | ID=Msa0754960-mRNA-1:exon:3955;Parent=Msa0754960-mRNA-1 |
| chr5_2 | exon | 8709011 | 8709068 | 8709011 | ID=Msa0754960-mRNA-1:exon:3956;Parent=Msa0754960-mRNA-1 |
| chr5_2 | exon | 8710383 | 8710814 | 8710383 | ID=Msa0754960-mRNA-1:exon:3957;Parent=Msa0754960-mRNA-1 |
| chr5_2 | five_prime_UTR | 8708309 | 8708416 | 8708309 | ID=Msa0754960-mRNA-1:five_prime_utr;Parent=Msa0754960-mRNA-1 |
| chr5_2 | CDS | 8708417 | 8708508 | 8708417 | ID=Msa0754960-mRNA-1:cds;Parent=Msa0754960-mRNA-1 |
| chr5_2 | CDS | 8708644 | 8708903 | 8708644 | ID=Msa0754960-mRNA-1:cds;Parent=Msa0754960-mRNA-1 |
| chr5_2 | CDS | 8709011 | 8709068 | 8709011 | ID=Msa0754960-mRNA-1:cds;Parent=Msa0754960-mRNA-1 |
| chr5_2 | CDS | 8710383 | 8710527 | 8710383 | ID=Msa0754960-mRNA-1:cds;Parent=Msa0754960-mRNA-1 |
| chr5_2 | three_prime_UTR | 8710528 | 8710814 | 8710528 | ID=Msa0754960-mRNA-1:three_prime_utr;Parent=Msa0754960-mRNA-1 |
| Gene Sequence |
| Protein sequence |
