Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0834360 | XP_024639117.1 | 84.043 | 188 | 22 | 3 | 1 | 184 | 1 | 184 | 1.14e-100 | 298 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0834360 | sp|Q84R94|TI10A_ORYSJ | 43.243 | 148 | 63 | 5 | 36 | 168 | 73 | 214 | 2.36e-28 | 108 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0834360 | A0A396HSW0 | 89.130 | 138 | 14 | 1 | 32 | 168 | 7 | 144 | 4.13e-86 | 259 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0834360 | TF | Tify |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0754960 | Msa0834360 | 0.904375 | 1.310345e-79 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0834360 | MtrunA17_Chr5g0399851 | 89.130 | 138 | 14 | 1 | 32 | 168 | 7 | 144 | 7.95e-90 | 259 |
| Msa0834360 | MtrunA17_Chr5g0399861 | 72.131 | 183 | 41 | 5 | 1 | 182 | 1 | 174 | 1.02e-89 | 260 |
| Msa0834360 | MtrunA17_Chr5g0399881 | 68.280 | 186 | 43 | 6 | 1 | 184 | 1 | 172 | 4.67e-81 | 238 |
| Msa0834360 | MtrunA17_Chr2g0301131 | 45.732 | 164 | 45 | 7 | 27 | 163 | 99 | 245 | 7.96e-35 | 122 |
| Msa0834360 | MtrunA17_Chr4g0070271 | 35.115 | 131 | 61 | 3 | 40 | 169 | 95 | 202 | 1.51e-17 | 76.6 |
| Msa0834360 | MtrunA17_Chr4g0069721 | 35.135 | 111 | 58 | 2 | 46 | 144 | 45 | 153 | 8.37e-14 | 66.2 |
| Msa0834360 | MtrunA17_Chr2g0302041 | 32.787 | 122 | 70 | 4 | 42 | 152 | 54 | 174 | 1.58e-13 | 65.9 |
| Msa0834360 | MtrunA17_Chr8g0344481 | 28.758 | 153 | 83 | 4 | 34 | 176 | 93 | 229 | 5.60e-11 | 59.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0834360 | AT1G19180.2 | 43.382 | 136 | 65 | 5 | 39 | 166 | 53 | 184 | 3.04e-27 | 102 |
| Msa0834360 | AT1G19180.1 | 43.382 | 136 | 65 | 5 | 39 | 166 | 119 | 250 | 1.19e-26 | 102 |
| Msa0834360 | AT1G19180.3 | 43.382 | 136 | 65 | 5 | 39 | 166 | 119 | 250 | 1.19e-26 | 102 |
| Msa0834360 | AT1G74950.1 | 40.580 | 138 | 68 | 5 | 39 | 164 | 112 | 247 | 4.63e-24 | 95.1 |
| Msa0834360 | AT1G74950.2 | 40.909 | 110 | 54 | 3 | 39 | 137 | 112 | 221 | 2.02e-18 | 79.7 |
| Msa0834360 | AT5G20900.1 | 34.234 | 111 | 65 | 1 | 46 | 148 | 57 | 167 | 1.93e-15 | 71.2 |
| Msa0834360 | AT1G72450.1 | 36.842 | 114 | 61 | 3 | 41 | 146 | 101 | 211 | 1.67e-13 | 67.4 |
| Msa0834360 | AT1G17380.1 | 29.452 | 146 | 92 | 2 | 11 | 146 | 63 | 207 | 4.50e-12 | 63.2 |
| Msa0834360 | AT1G17380.2 | 29.452 | 146 | 92 | 2 | 11 | 146 | 34 | 178 | 6.53e-12 | 62.4 |
| Msa0834360 | AT1G70700.2 | 35.238 | 105 | 61 | 3 | 46 | 145 | 119 | 221 | 1.58e-11 | 61.6 |
Find 51 sgRNAs with CRISPR-Local
Find 192 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTACAAGAGGTTTCAAATTT+AGG | 0.093614 | 5_4:+7389348 | Msa0834360:CDS |
| TTACACTTCTTAATTAATTA+TGG | 0.165503 | 5_4:-7391247 | None:intergenic |
| CATGACATGAATTCATTAAT+TGG | 0.189235 | 5_4:-7391011 | None:intergenic |
| GTACCCACACCTGTTATTTA+TGG | 0.191322 | 5_4:+7389753 | Msa0834360:CDS |
| ATTCATTAATTGGCTTATTA+AGG | 0.221545 | 5_4:-7391001 | None:intergenic |
| AGCTTCACTTCATCGGTTCT+TGG | 0.292747 | 5_4:+7389900 | Msa0834360:CDS |
| TATGAACTGGATCAATCATT+AGG | 0.302707 | 5_4:+7391130 | Msa0834360:three_prime_UTR |
| GTTGGGTTACTTGTTTGATA+TGG | 0.309920 | 5_4:-7390975 | None:intergenic |
| TACACTTCTTAATTAATTAT+GGG | 0.311234 | 5_4:-7391246 | None:intergenic |
| ATTCATGTCATGGCTCTCTT+TGG | 0.337078 | 5_4:+7391022 | Msa0834360:CDS |
| TTTCAAATTTAGGAAATTCC+AGG | 0.358166 | 5_4:+7389358 | Msa0834360:CDS |
| GATATAAAGCTTTGTGTTGA+TGG | 0.362339 | 5_4:-7391369 | None:intergenic |
| TTGAGAGTTAGTAGTTCCTT+TGG | 0.375053 | 5_4:-7389643 | None:intergenic |
| ATTGGCTTATTAAGGTTTGT+TGG | 0.391845 | 5_4:-7390993 | None:intergenic |
| AGTGAAGCTTTCCTTGTCAT+TGG | 0.396031 | 5_4:-7389886 | None:intergenic |
| TTGGCTTATTAAGGTTTGTT+GGG | 0.406880 | 5_4:-7390992 | None:intergenic |
| TGGAGCTACATTCTGATTTG+TGG | 0.411283 | 5_4:-7391064 | None:intergenic |
| AACTATATATATCTATGAAC+TGG | 0.419301 | 5_4:+7391117 | Msa0834360:three_prime_UTR |
| TTGTTTGAGGAGGGTGAGAG+TGG | 0.423859 | 5_4:-7389201 | None:intergenic |
| ATGAACTGGATCAATCATTA+GGG | 0.427313 | 5_4:+7391131 | Msa0834360:three_prime_UTR |
| GAATTTCTAGCAAGAAATGA+TGG | 0.446507 | 5_4:-7389711 | None:intergenic |
| CAAATGACAATCTTCTATGA+TGG | 0.453411 | 5_4:+7389558 | Msa0834360:CDS |
| TTCATCGGTTCTTGGAGAAA+AGG | 0.463618 | 5_4:+7389908 | Msa0834360:CDS |
| CATTCTGATTTGTGGTCTTG+TGG | 0.464643 | 5_4:-7391056 | None:intergenic |
| GAAGAATAGTTGTTTGAGGA+GGG | 0.475715 | 5_4:-7389210 | None:intergenic |
| GATTGAAGAATAGTTGTTTG+AGG | 0.479225 | 5_4:-7389214 | None:intergenic |
| AGAGTTAGTAGTTCCTTTGG+AGG | 0.509053 | 5_4:-7389640 | None:intergenic |
| TTGTGGTCTTGTGGTGATTG+TGG | 0.515403 | 5_4:-7391047 | None:intergenic |
| CAAGGAAAGCTTCACTTCAT+CGG | 0.526583 | 5_4:+7389893 | Msa0834360:CDS |
| AAATGACAATCTTCTATGAT+GGG | 0.538308 | 5_4:+7389559 | Msa0834360:CDS |
| AATGAAGGCTAATATTAAGA+AGG | 0.540403 | 5_4:+7389518 | Msa0834360:CDS |
| GGGTACTTGAAGAGAATTGT+TGG | 0.556411 | 5_4:-7389736 | None:intergenic |
| GAAAATTCAACATAGGTGTA+CGG | 0.557738 | 5_4:-7389302 | None:intergenic |
| AAGTTAAAGAAAGACAGAGC+TGG | 0.561002 | 5_4:-7391084 | None:intergenic |
| GGCTAATATTAAGAAGGAAG+AGG | 0.566182 | 5_4:+7389524 | Msa0834360:CDS |
| TCTTGGAGAAAAGGAAGGAT+AGG | 0.567398 | 5_4:+7389917 | Msa0834360:CDS |
| TGAAGAATAGTTGTTTGAGG+AGG | 0.569497 | 5_4:-7389211 | None:intergenic |
| TTACCATAAATAACAGGTGT+GGG | 0.570307 | 5_4:-7389756 | None:intergenic |
| AAGCATAGTTGTTATTGTTG+TGG | 0.572885 | 5_4:-7389668 | None:intergenic |
| ACGTGTTGAAAATTCAACAT+AGG | 0.573945 | 5_4:-7389309 | None:intergenic |
| TCCTCATCTCTCTCTACAAG+AGG | 0.582418 | 5_4:+7389335 | Msa0834360:CDS |
| TCGGTTCTTGGAGAAAAGGA+AGG | 0.585705 | 5_4:+7389912 | Msa0834360:CDS |
| TTTACCATAAATAACAGGTG+TGG | 0.589296 | 5_4:-7389757 | None:intergenic |
| CAATTAATGAATTCATGTCA+TGG | 0.607012 | 5_4:+7391012 | Msa0834360:CDS |
| TGTTGATGGAAGAATTGACA+TGG | 0.629229 | 5_4:-7391355 | None:intergenic |
| CTAAATGTTCGTGAATGTTG+TGG | 0.634244 | 5_4:+7391207 | Msa0834360:three_prime_UTR |
| AATTTCTAGCAAGAAATGAT+GGG | 0.637681 | 5_4:-7389710 | None:intergenic |
| ACCTCTTGTAGAGAGAGATG+AGG | 0.644344 | 5_4:-7389336 | None:intergenic |
| TTCTAGCAAGAAATGATGGG+TGG | 0.652275 | 5_4:-7389707 | None:intergenic |
| TGCATATACAGTGAATGTAG+AGG | 0.666288 | 5_4:-7391279 | None:intergenic |
| ATACAGATTTACCAATGACA+AGG | 0.684860 | 5_4:+7389875 | Msa0834360:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTATGGTAAAAAAATAAT+TGG | + | chr5_4:7389768-7389787 | Msa0834360:intron | 10.0% |
| !!! | AATATGAATTTTTATGTTTT+TGG | - | chr5_4:7390260-7390279 | None:intergenic | 10.0% |
| !! | TAAAAAAAATCTAATTTCTT+TGG | + | chr5_4:7390295-7390314 | Msa0834360:intron | 10.0% |
| !! | AAAAAAAATCTAATTTCTTT+GGG | + | chr5_4:7390296-7390315 | Msa0834360:intron | 10.0% |
| !! | ATTTATGGTAAAAAAATAAT+TGG | + | chr5_4:7389768-7389787 | Msa0834360:intron | 10.0% |
| !!! | AATATGAATTTTTATGTTTT+TGG | - | chr5_4:7390260-7390279 | None:intergenic | 10.0% |
| !! | TAAAAAAAATCTAATTTCTT+TGG | + | chr5_4:7390295-7390314 | Msa0834360:intron | 10.0% |
| !! | AAAAAAAATCTAATTTCTTT+GGG | + | chr5_4:7390296-7390315 | Msa0834360:intron | 10.0% |
| !!! | ATTTTTTTACCATAAATAAC+AGG | - | chr5_4:7389765-7389784 | None:intergenic | 15.0% |
| !!! | AATTTGACAAAAATTTTAGA+AGG | - | chr5_4:7390058-7390077 | None:intergenic | 15.0% |
| !!! | AAGTTTTTCATCATTTATTT+TGG | + | chr5_4:7390089-7390108 | Msa0834360:intron | 15.0% |
| !!! | TTTTGGGTTTAATATATTTT+TGG | - | chr5_4:7390465-7390484 | None:intergenic | 15.0% |
| !!! | TTATTTCCTATTTCATTTTT+GGG | - | chr5_4:7390481-7390500 | None:intergenic | 15.0% |
| !!! | ATTATTTCCTATTTCATTTT+TGG | - | chr5_4:7390482-7390501 | None:intergenic | 15.0% |
| !! | ATTATCAAATAAAAGTTCAT+CGG | - | chr5_4:7390519-7390538 | None:intergenic | 15.0% |
| !! | CAAAAATCATAATAGAAAAA+AGG | - | chr5_4:7390897-7390916 | None:intergenic | 15.0% |
| !! | TACACTTCTTAATTAATTAT+GGG | - | chr5_4:7391249-7391268 | None:intergenic | 15.0% |
| !! | TTACACTTCTTAATTAATTA+TGG | - | chr5_4:7391250-7391269 | None:intergenic | 15.0% |
| !!! | ATTTTTTTACCATAAATAAC+AGG | - | chr5_4:7389765-7389784 | None:intergenic | 15.0% |
| !!! | AATTTGACAAAAATTTTAGA+AGG | - | chr5_4:7390058-7390077 | None:intergenic | 15.0% |
| !!! | AAGTTTTTCATCATTTATTT+TGG | + | chr5_4:7390089-7390108 | Msa0834360:intron | 15.0% |
| !!! | TTTTGGGTTTAATATATTTT+TGG | - | chr5_4:7390465-7390484 | None:intergenic | 15.0% |
| !!! | TTATTTCCTATTTCATTTTT+GGG | - | chr5_4:7390481-7390500 | None:intergenic | 15.0% |
| !!! | ATTATTTCCTATTTCATTTT+TGG | - | chr5_4:7390482-7390501 | None:intergenic | 15.0% |
| !! | ATTATCAAATAAAAGTTCAT+CGG | - | chr5_4:7390519-7390538 | None:intergenic | 15.0% |
| !! | CAAAAATCATAATAGAAAAA+AGG | - | chr5_4:7390897-7390916 | None:intergenic | 15.0% |
| !! | TACACTTCTTAATTAATTAT+GGG | - | chr5_4:7391249-7391268 | None:intergenic | 15.0% |
| !! | TTACACTTCTTAATTAATTA+TGG | - | chr5_4:7391250-7391269 | None:intergenic | 15.0% |
| !!! | AATGACATTTTTTCAGAAAT+AGG | - | chr5_4:7390343-7390362 | None:intergenic | 20.0% |
| !! | ATTAAACCCAAAAATGAAAT+AGG | + | chr5_4:7390472-7390491 | Msa0834360:intron | 20.0% |
| !!! | TATTTGATAATTGATAGACT+AGG | + | chr5_4:7390528-7390547 | Msa0834360:intron | 20.0% |
| !! | CAAACATATCAGTAAAAATA+TGG | - | chr5_4:7390924-7390943 | None:intergenic | 20.0% |
| !!! | ATTCATTAATTGGCTTATTA+AGG | - | chr5_4:7391004-7391023 | None:intergenic | 20.0% |
| !! | AACTATATATATCTATGAAC+TGG | + | chr5_4:7391117-7391136 | Msa0834360:three_prime_UTR | 20.0% |
| !!! | AATGACATTTTTTCAGAAAT+AGG | - | chr5_4:7390343-7390362 | None:intergenic | 20.0% |
| !! | ATTAAACCCAAAAATGAAAT+AGG | + | chr5_4:7390472-7390491 | Msa0834360:intron | 20.0% |
| !!! | TATTTGATAATTGATAGACT+AGG | + | chr5_4:7390528-7390547 | Msa0834360:intron | 20.0% |
| !! | CAAACATATCAGTAAAAATA+TGG | - | chr5_4:7390924-7390943 | None:intergenic | 20.0% |
| !!! | ATTCATTAATTGGCTTATTA+AGG | - | chr5_4:7391004-7391023 | None:intergenic | 20.0% |
| !! | AACTATATATATCTATGAAC+TGG | + | chr5_4:7391117-7391136 | Msa0834360:three_prime_UTR | 20.0% |
| ! | TTTCAAATTTAGGAAATTCC+AGG | + | chr5_4:7389358-7389377 | Msa0834360:CDS | 25.0% |
| ! | AGTAGCTAAAAAAATGTTGA+TGG | - | chr5_4:7389418-7389437 | None:intergenic | 25.0% |
| ! | CATGATTCATGTTTATAACA+TGG | + | chr5_4:7389450-7389469 | Msa0834360:intron | 25.0% |
| ! | AATGAAGGCTAATATTAAGA+AGG | + | chr5_4:7389518-7389537 | Msa0834360:CDS | 25.0% |
| ! | AAATGACAATCTTCTATGAT+GGG | + | chr5_4:7389559-7389578 | Msa0834360:CDS | 25.0% |
| !!! | AATTTCTAGCAAGAAATGAT+GGG | - | chr5_4:7389713-7389732 | None:intergenic | 25.0% |
| ! | TAATTGGATATCTATTTGAG+TGG | + | chr5_4:7389784-7389803 | Msa0834360:intron | 25.0% |
| !! | TCTTATTTGTTAGAAAGATC+TGG | - | chr5_4:7389951-7389970 | None:intergenic | 25.0% |
| ! | TACAATCAAACAGTAATTAG+TGG | - | chr5_4:7389984-7390003 | None:intergenic | 25.0% |
| ! | GAGTTGAATAAAAGTCATTA+AGG | - | chr5_4:7390116-7390135 | None:intergenic | 25.0% |
| !! | GTTAATTCTGAAAACTTAAG+AGG | + | chr5_4:7390555-7390574 | Msa0834360:intron | 25.0% |
| !! | TTCAATACTTTTGCAAAAGA+AGG | - | chr5_4:7390634-7390653 | None:intergenic | 25.0% |
| !!! | TTTGCAAAAGTATTGAATCT+CGG | + | chr5_4:7390637-7390656 | Msa0834360:intron | 25.0% |
| ! | ATTATCTGACTTTCAATCAA+TGG | - | chr5_4:7390765-7390784 | None:intergenic | 25.0% |
| ! | CATGACATGAATTCATTAAT+TGG | - | chr5_4:7391014-7391033 | None:intergenic | 25.0% |
| ! | CAATTAATGAATTCATGTCA+TGG | + | chr5_4:7391012-7391031 | Msa0834360:CDS | 25.0% |
| ! | TTTCAAATTTAGGAAATTCC+AGG | + | chr5_4:7389358-7389377 | Msa0834360:CDS | 25.0% |
| ! | AGTAGCTAAAAAAATGTTGA+TGG | - | chr5_4:7389418-7389437 | None:intergenic | 25.0% |
| ! | CATGATTCATGTTTATAACA+TGG | + | chr5_4:7389450-7389469 | Msa0834360:intron | 25.0% |
| ! | AATGAAGGCTAATATTAAGA+AGG | + | chr5_4:7389518-7389537 | Msa0834360:CDS | 25.0% |
| ! | AAATGACAATCTTCTATGAT+GGG | + | chr5_4:7389559-7389578 | Msa0834360:CDS | 25.0% |
| !!! | AATTTCTAGCAAGAAATGAT+GGG | - | chr5_4:7389713-7389732 | None:intergenic | 25.0% |
| ! | TAATTGGATATCTATTTGAG+TGG | + | chr5_4:7389784-7389803 | Msa0834360:intron | 25.0% |
| !! | TCTTATTTGTTAGAAAGATC+TGG | - | chr5_4:7389951-7389970 | None:intergenic | 25.0% |
| ! | TACAATCAAACAGTAATTAG+TGG | - | chr5_4:7389984-7390003 | None:intergenic | 25.0% |
| ! | GAGTTGAATAAAAGTCATTA+AGG | - | chr5_4:7390116-7390135 | None:intergenic | 25.0% |
| !! | GTTAATTCTGAAAACTTAAG+AGG | + | chr5_4:7390555-7390574 | Msa0834360:intron | 25.0% |
| !! | TTCAATACTTTTGCAAAAGA+AGG | - | chr5_4:7390634-7390653 | None:intergenic | 25.0% |
| !!! | TTTGCAAAAGTATTGAATCT+CGG | + | chr5_4:7390637-7390656 | Msa0834360:intron | 25.0% |
| ! | ATTATCTGACTTTCAATCAA+TGG | - | chr5_4:7390765-7390784 | None:intergenic | 25.0% |
| ! | CATGACATGAATTCATTAAT+TGG | - | chr5_4:7391014-7391033 | None:intergenic | 25.0% |
| ! | CAATTAATGAATTCATGTCA+TGG | + | chr5_4:7391012-7391031 | Msa0834360:CDS | 25.0% |
| GATTGAAGAATAGTTGTTTG+AGG | - | chr5_4:7389217-7389236 | None:intergenic | 30.0% | |
| !!! | TGTTTTGTGCTTTTTTGGTA+CGG | - | chr5_4:7389266-7389285 | None:intergenic | 30.0% |
| !! | CATGATGTTTTGTGCTTTTT+TGG | - | chr5_4:7389271-7389290 | None:intergenic | 30.0% |
| GAAAATTCAACATAGGTGTA+CGG | - | chr5_4:7389305-7389324 | None:intergenic | 30.0% | |
| ACGTGTTGAAAATTCAACAT+AGG | - | chr5_4:7389312-7389331 | None:intergenic | 30.0% | |
| CTACAAGAGGTTTCAAATTT+AGG | + | chr5_4:7389348-7389367 | Msa0834360:CDS | 30.0% | |
| !! | GTTTTATTACAGAGCAATGA+AGG | + | chr5_4:7389503-7389522 | Msa0834360:intron | 30.0% |
| CAAATGACAATCTTCTATGA+TGG | + | chr5_4:7389558-7389577 | Msa0834360:CDS | 30.0% | |
| TGAAAAAGTCAAGGACATTA+TGG | + | chr5_4:7389611-7389630 | Msa0834360:CDS | 30.0% | |
| ! | AAGCATAGTTGTTATTGTTG+TGG | - | chr5_4:7389671-7389690 | None:intergenic | 30.0% |
| !! | GAATTTCTAGCAAGAAATGA+TGG | - | chr5_4:7389714-7389733 | None:intergenic | 30.0% |
| TTACCATAAATAACAGGTGT+GGG | - | chr5_4:7389759-7389778 | None:intergenic | 30.0% | |
| TTTACCATAAATAACAGGTG+TGG | - | chr5_4:7389760-7389779 | None:intergenic | 30.0% | |
| ATACAGATTTACCAATGACA+AGG | + | chr5_4:7389875-7389894 | Msa0834360:intron | 30.0% | |
| TCAAACAGTAATTAGTGGTT+AGG | - | chr5_4:7389979-7389998 | None:intergenic | 30.0% | |
| ! | CATGAGTTGACTAAAAAGTA+AGG | + | chr5_4:7390382-7390401 | Msa0834360:intron | 30.0% |
| TCAACAATTCCTTTAGACAT+AGG | + | chr5_4:7390790-7390809 | Msa0834360:intron | 30.0% | |
| ATTTCGGAACAAGAAGTAAA+AGG | - | chr5_4:7390849-7390868 | None:intergenic | 30.0% | |
| ! | TTGGCTTATTAAGGTTTGTT+GGG | - | chr5_4:7390995-7391014 | None:intergenic | 30.0% |
| ! | ATTGGCTTATTAAGGTTTGT+TGG | - | chr5_4:7390996-7391015 | None:intergenic | 30.0% |
| TATGAACTGGATCAATCATT+AGG | + | chr5_4:7391130-7391149 | Msa0834360:three_prime_UTR | 30.0% | |
| ATGAACTGGATCAATCATTA+GGG | + | chr5_4:7391131-7391150 | Msa0834360:three_prime_UTR | 30.0% | |
| ! | TTTCTCTATTTTGTAGGACT+TGG | + | chr5_4:7391156-7391175 | Msa0834360:three_prime_UTR | 30.0% |
| !! | AGACATATTTTTGTGAGCAT+AGG | - | chr5_4:7391189-7391208 | None:intergenic | 30.0% |
| GATTGAAGAATAGTTGTTTG+AGG | - | chr5_4:7389217-7389236 | None:intergenic | 30.0% | |
| !!! | TGTTTTGTGCTTTTTTGGTA+CGG | - | chr5_4:7389266-7389285 | None:intergenic | 30.0% |
| !! | CATGATGTTTTGTGCTTTTT+TGG | - | chr5_4:7389271-7389290 | None:intergenic | 30.0% |
| GAAAATTCAACATAGGTGTA+CGG | - | chr5_4:7389305-7389324 | None:intergenic | 30.0% | |
| ACGTGTTGAAAATTCAACAT+AGG | - | chr5_4:7389312-7389331 | None:intergenic | 30.0% | |
| CTACAAGAGGTTTCAAATTT+AGG | + | chr5_4:7389348-7389367 | Msa0834360:CDS | 30.0% | |
| !! | GTTTTATTACAGAGCAATGA+AGG | + | chr5_4:7389503-7389522 | Msa0834360:intron | 30.0% |
| CAAATGACAATCTTCTATGA+TGG | + | chr5_4:7389558-7389577 | Msa0834360:CDS | 30.0% | |
| TGAAAAAGTCAAGGACATTA+TGG | + | chr5_4:7389611-7389630 | Msa0834360:CDS | 30.0% | |
| ! | AAGCATAGTTGTTATTGTTG+TGG | - | chr5_4:7389671-7389690 | None:intergenic | 30.0% |
| !! | GAATTTCTAGCAAGAAATGA+TGG | - | chr5_4:7389714-7389733 | None:intergenic | 30.0% |
| TTACCATAAATAACAGGTGT+GGG | - | chr5_4:7389759-7389778 | None:intergenic | 30.0% | |
| TTTACCATAAATAACAGGTG+TGG | - | chr5_4:7389760-7389779 | None:intergenic | 30.0% | |
| ATACAGATTTACCAATGACA+AGG | + | chr5_4:7389875-7389894 | Msa0834360:intron | 30.0% | |
| TCAAACAGTAATTAGTGGTT+AGG | - | chr5_4:7389979-7389998 | None:intergenic | 30.0% | |
| ! | CATGAGTTGACTAAAAAGTA+AGG | + | chr5_4:7390382-7390401 | Msa0834360:intron | 30.0% |
| TCAACAATTCCTTTAGACAT+AGG | + | chr5_4:7390790-7390809 | Msa0834360:intron | 30.0% | |
| ATTTCGGAACAAGAAGTAAA+AGG | - | chr5_4:7390849-7390868 | None:intergenic | 30.0% | |
| ! | TTGGCTTATTAAGGTTTGTT+GGG | - | chr5_4:7390995-7391014 | None:intergenic | 30.0% |
| ! | ATTGGCTTATTAAGGTTTGT+TGG | - | chr5_4:7390996-7391015 | None:intergenic | 30.0% |
| TATGAACTGGATCAATCATT+AGG | + | chr5_4:7391130-7391149 | Msa0834360:three_prime_UTR | 30.0% | |
| ATGAACTGGATCAATCATTA+GGG | + | chr5_4:7391131-7391150 | Msa0834360:three_prime_UTR | 30.0% | |
| ! | TTTCTCTATTTTGTAGGACT+TGG | + | chr5_4:7391156-7391175 | Msa0834360:three_prime_UTR | 30.0% |
| !! | AGACATATTTTTGTGAGCAT+AGG | - | chr5_4:7391189-7391208 | None:intergenic | 30.0% |
| GAAGAATAGTTGTTTGAGGA+GGG | - | chr5_4:7389213-7389232 | None:intergenic | 35.0% | |
| TGAAGAATAGTTGTTTGAGG+AGG | - | chr5_4:7389214-7389233 | None:intergenic | 35.0% | |
| GGCTAATATTAAGAAGGAAG+AGG | + | chr5_4:7389524-7389543 | Msa0834360:CDS | 35.0% | |
| TATTCCAGCTGAAAAAGTCA+AGG | + | chr5_4:7389602-7389621 | Msa0834360:CDS | 35.0% | |
| ! | ATTATGGTCTTTTCCTCCAA+AGG | + | chr5_4:7389627-7389646 | Msa0834360:CDS | 35.0% |
| TTGAGAGTTAGTAGTTCCTT+TGG | - | chr5_4:7389646-7389665 | None:intergenic | 35.0% | |
| ! | ATTTGTTAGAAAGATCTGGC+TGG | - | chr5_4:7389947-7389966 | None:intergenic | 35.0% |
| CATGCATTTCCTATGTCTAA+AGG | - | chr5_4:7390802-7390821 | None:intergenic | 35.0% | |
| TGACACGACTCAAACTATTT+CGG | - | chr5_4:7390865-7390884 | None:intergenic | 35.0% | |
| GTTGGGTTACTTGTTTGATA+TGG | - | chr5_4:7390978-7390997 | None:intergenic | 35.0% | |
| AAGTTAAAGAAAGACAGAGC+TGG | - | chr5_4:7391087-7391106 | None:intergenic | 35.0% | |
| !! | AGGGTGTTTCTCTATTTTGT+AGG | + | chr5_4:7391150-7391169 | Msa0834360:three_prime_UTR | 35.0% |
| CTAAATGTTCGTGAATGTTG+TGG | + | chr5_4:7391207-7391226 | Msa0834360:three_prime_UTR | 35.0% | |
| TGCATATACAGTGAATGTAG+AGG | - | chr5_4:7391282-7391301 | None:intergenic | 35.0% | |
| ! | TGTTGATGGAAGAATTGACA+TGG | - | chr5_4:7391358-7391377 | None:intergenic | 35.0% |
| GAAGAATAGTTGTTTGAGGA+GGG | - | chr5_4:7389213-7389232 | None:intergenic | 35.0% | |
| TGAAGAATAGTTGTTTGAGG+AGG | - | chr5_4:7389214-7389233 | None:intergenic | 35.0% | |
| GGCTAATATTAAGAAGGAAG+AGG | + | chr5_4:7389524-7389543 | Msa0834360:CDS | 35.0% | |
| TATTCCAGCTGAAAAAGTCA+AGG | + | chr5_4:7389602-7389621 | Msa0834360:CDS | 35.0% | |
| ! | ATTATGGTCTTTTCCTCCAA+AGG | + | chr5_4:7389627-7389646 | Msa0834360:CDS | 35.0% |
| TTGAGAGTTAGTAGTTCCTT+TGG | - | chr5_4:7389646-7389665 | None:intergenic | 35.0% | |
| ! | ATTTGTTAGAAAGATCTGGC+TGG | - | chr5_4:7389947-7389966 | None:intergenic | 35.0% |
| CATGCATTTCCTATGTCTAA+AGG | - | chr5_4:7390802-7390821 | None:intergenic | 35.0% | |
| TGACACGACTCAAACTATTT+CGG | - | chr5_4:7390865-7390884 | None:intergenic | 35.0% | |
| GTTGGGTTACTTGTTTGATA+TGG | - | chr5_4:7390978-7390997 | None:intergenic | 35.0% | |
| AAGTTAAAGAAAGACAGAGC+TGG | - | chr5_4:7391087-7391106 | None:intergenic | 35.0% | |
| !! | AGGGTGTTTCTCTATTTTGT+AGG | + | chr5_4:7391150-7391169 | Msa0834360:three_prime_UTR | 35.0% |
| CTAAATGTTCGTGAATGTTG+TGG | + | chr5_4:7391207-7391226 | Msa0834360:three_prime_UTR | 35.0% | |
| TGCATATACAGTGAATGTAG+AGG | - | chr5_4:7391282-7391301 | None:intergenic | 35.0% | |
| ! | TGTTGATGGAAGAATTGACA+TGG | - | chr5_4:7391358-7391377 | None:intergenic | 35.0% |
| GTAGCAAAAGAACATGTACC+TGG | - | chr5_4:7389379-7389398 | None:intergenic | 40.0% | |
| !!! | ATGTCCTTGACTTTTTCAGC+TGG | - | chr5_4:7389609-7389628 | None:intergenic | 40.0% |
| AGAGTTAGTAGTTCCTTTGG+AGG | - | chr5_4:7389643-7389662 | None:intergenic | 40.0% | |
| ! | TTCTAGCAAGAAATGATGGG+TGG | - | chr5_4:7389710-7389729 | None:intergenic | 40.0% |
| GGGTACTTGAAGAGAATTGT+TGG | - | chr5_4:7389739-7389758 | None:intergenic | 40.0% | |
| ! | GTACCCACACCTGTTATTTA+TGG | + | chr5_4:7389753-7389772 | Msa0834360:CDS | 40.0% |
| AGTGAAGCTTTCCTTGTCAT+TGG | - | chr5_4:7389889-7389908 | None:intergenic | 40.0% | |
| CAAGGAAAGCTTCACTTCAT+CGG | + | chr5_4:7389893-7389912 | Msa0834360:CDS | 40.0% | |
| !! | TTCATCGGTTCTTGGAGAAA+AGG | + | chr5_4:7389908-7389927 | Msa0834360:CDS | 40.0% |
| TCTTGGAGAAAAGGAAGGAT+AGG | + | chr5_4:7389917-7389936 | Msa0834360:CDS | 40.0% | |
| GCCATCAATTTGTGATCAGT+CGG | + | chr5_4:7390659-7390678 | Msa0834360:intron | 40.0% | |
| ATTCATGTCATGGCTCTCTT+TGG | + | chr5_4:7391022-7391041 | Msa0834360:CDS | 40.0% | |
| ! | CATTCTGATTTGTGGTCTTG+TGG | - | chr5_4:7391059-7391078 | None:intergenic | 40.0% |
| ! | TGGAGCTACATTCTGATTTG+TGG | - | chr5_4:7391067-7391086 | None:intergenic | 40.0% |
| GTAGCAAAAGAACATGTACC+TGG | - | chr5_4:7389379-7389398 | None:intergenic | 40.0% | |
| !!! | ATGTCCTTGACTTTTTCAGC+TGG | - | chr5_4:7389609-7389628 | None:intergenic | 40.0% |
| AGAGTTAGTAGTTCCTTTGG+AGG | - | chr5_4:7389643-7389662 | None:intergenic | 40.0% | |
| ! | TTCTAGCAAGAAATGATGGG+TGG | - | chr5_4:7389710-7389729 | None:intergenic | 40.0% |
| GGGTACTTGAAGAGAATTGT+TGG | - | chr5_4:7389739-7389758 | None:intergenic | 40.0% | |
| ! | GTACCCACACCTGTTATTTA+TGG | + | chr5_4:7389753-7389772 | Msa0834360:CDS | 40.0% |
| AGTGAAGCTTTCCTTGTCAT+TGG | - | chr5_4:7389889-7389908 | None:intergenic | 40.0% | |
| CAAGGAAAGCTTCACTTCAT+CGG | + | chr5_4:7389893-7389912 | Msa0834360:CDS | 40.0% | |
| !! | TTCATCGGTTCTTGGAGAAA+AGG | + | chr5_4:7389908-7389927 | Msa0834360:CDS | 40.0% |
| TCTTGGAGAAAAGGAAGGAT+AGG | + | chr5_4:7389917-7389936 | Msa0834360:CDS | 40.0% | |
| GCCATCAATTTGTGATCAGT+CGG | + | chr5_4:7390659-7390678 | Msa0834360:intron | 40.0% | |
| ATTCATGTCATGGCTCTCTT+TGG | + | chr5_4:7391022-7391041 | Msa0834360:CDS | 40.0% | |
| ! | CATTCTGATTTGTGGTCTTG+TGG | - | chr5_4:7391059-7391078 | None:intergenic | 40.0% |
| ! | TGGAGCTACATTCTGATTTG+TGG | - | chr5_4:7391067-7391086 | None:intergenic | 40.0% |
| TCCTCATCTCTCTCTACAAG+AGG | + | chr5_4:7389335-7389354 | Msa0834360:CDS | 45.0% | |
| ACCTCTTGTAGAGAGAGATG+AGG | - | chr5_4:7389339-7389358 | None:intergenic | 45.0% | |
| !! | AGCTTCACTTCATCGGTTCT+TGG | + | chr5_4:7389900-7389919 | Msa0834360:CDS | 45.0% |
| TCGGTTCTTGGAGAAAAGGA+AGG | + | chr5_4:7389912-7389931 | Msa0834360:CDS | 45.0% | |
| GCCGACTGATCACAAATTGA+TGG | - | chr5_4:7390663-7390682 | None:intergenic | 45.0% | |
| !! | TTGTGGTCTTGTGGTGATTG+TGG | - | chr5_4:7391050-7391069 | None:intergenic | 45.0% |
| TCCTCATCTCTCTCTACAAG+AGG | + | chr5_4:7389335-7389354 | Msa0834360:CDS | 45.0% | |
| ACCTCTTGTAGAGAGAGATG+AGG | - | chr5_4:7389339-7389358 | None:intergenic | 45.0% | |
| !! | AGCTTCACTTCATCGGTTCT+TGG | + | chr5_4:7389900-7389919 | Msa0834360:CDS | 45.0% |
| TCGGTTCTTGGAGAAAAGGA+AGG | + | chr5_4:7389912-7389931 | Msa0834360:CDS | 45.0% | |
| GCCGACTGATCACAAATTGA+TGG | - | chr5_4:7390663-7390682 | None:intergenic | 45.0% | |
| !! | TTGTGGTCTTGTGGTGATTG+TGG | - | chr5_4:7391050-7391069 | None:intergenic | 45.0% |
| TTGTTTGAGGAGGGTGAGAG+TGG | - | chr5_4:7389204-7389223 | None:intergenic | 50.0% | |
| TTGTTTGAGGAGGGTGAGAG+TGG | - | chr5_4:7389204-7389223 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 7389180 | 7391390 | 7389180 | ID=Msa0834360;Name=Msa0834360 |
| chr5_4 | mRNA | 7389180 | 7391390 | 7389180 | ID=Msa0834360-mRNA-1;Parent=Msa0834360;Name=Msa0834360-mRNA-1;_AED=0.42;_eAED=0.42;_QI=108|1|1|1|1|1|4|287|184 |
| chr5_4 | exon | 7389180 | 7389379 | 7389180 | ID=Msa0834360-mRNA-1:exon:3326;Parent=Msa0834360-mRNA-1 |
| chr5_4 | exon | 7389515 | 7389774 | 7389515 | ID=Msa0834360-mRNA-1:exon:3327;Parent=Msa0834360-mRNA-1 |
| chr5_4 | exon | 7389881 | 7389938 | 7389881 | ID=Msa0834360-mRNA-1:exon:3328;Parent=Msa0834360-mRNA-1 |
| chr5_4 | exon | 7390959 | 7391390 | 7390959 | ID=Msa0834360-mRNA-1:exon:3329;Parent=Msa0834360-mRNA-1 |
| chr5_4 | five_prime_UTR | 7389180 | 7389287 | 7389180 | ID=Msa0834360-mRNA-1:five_prime_utr;Parent=Msa0834360-mRNA-1 |
| chr5_4 | CDS | 7389288 | 7389379 | 7389288 | ID=Msa0834360-mRNA-1:cds;Parent=Msa0834360-mRNA-1 |
| chr5_4 | CDS | 7389515 | 7389774 | 7389515 | ID=Msa0834360-mRNA-1:cds;Parent=Msa0834360-mRNA-1 |
| chr5_4 | CDS | 7389881 | 7389938 | 7389881 | ID=Msa0834360-mRNA-1:cds;Parent=Msa0834360-mRNA-1 |
| chr5_4 | CDS | 7390959 | 7391103 | 7390959 | ID=Msa0834360-mRNA-1:cds;Parent=Msa0834360-mRNA-1 |
| chr5_4 | three_prime_UTR | 7391104 | 7391390 | 7391104 | ID=Msa0834360-mRNA-1:three_prime_utr;Parent=Msa0834360-mRNA-1 |
| Gene Sequence |
| Protein sequence |
