Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0756600 | XP_003611669.1 | 99.451 | 182 | 1 | 0 | 1 | 182 | 1 | 182 | 1.08e-130 | 374 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0756600 | sp|P51823|ARF2_ORYSJ | 88.333 | 180 | 21 | 0 | 1 | 180 | 1 | 180 | 1.50e-120 | 341 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0756600 | G7K590 | 99.451 | 182 | 1 | 0 | 1 | 182 | 1 | 182 | 5.17e-131 | 374 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0755740 | Msa0756600 | 0.911369 | 6.578186e-83 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0756600 | MtrunA17_Chr5g0401761 | 99.451 | 182 | 1 | 0 | 1 | 182 | 1 | 182 | 9.95e-135 | 374 |
| Msa0756600 | MtrunA17_Chr5g0413451 | 87.778 | 180 | 22 | 0 | 1 | 180 | 1 | 180 | 4.36e-121 | 339 |
| Msa0756600 | MtrunA17_Chr5g0413441 | 87.778 | 180 | 22 | 0 | 1 | 180 | 1 | 180 | 4.36e-121 | 339 |
| Msa0756600 | MtrunA17_Chr1g0194261 | 87.222 | 180 | 23 | 0 | 1 | 180 | 1 | 180 | 1.59e-120 | 338 |
| Msa0756600 | MtrunA17_Chr6g0450081 | 87.222 | 180 | 23 | 0 | 1 | 180 | 1 | 180 | 2.64e-120 | 337 |
| Msa0756600 | MtrunA17_Chr7g0270301 | 86.667 | 180 | 24 | 0 | 1 | 180 | 1 | 180 | 6.56e-120 | 336 |
| Msa0756600 | MtrunA17_Chr5g0395631 | 59.887 | 177 | 71 | 0 | 1 | 177 | 1 | 177 | 1.60e-80 | 237 |
| Msa0756600 | MtrunA17_Chr4g0039591 | 58.757 | 177 | 73 | 0 | 1 | 177 | 1 | 177 | 1.33e-77 | 230 |
| Msa0756600 | MtrunA17_Chr4g0072861 | 56.983 | 179 | 77 | 0 | 1 | 179 | 1 | 179 | 4.88e-77 | 228 |
| Msa0756600 | MtrunA17_Chr5g0395641 | 53.297 | 182 | 83 | 1 | 1 | 180 | 1 | 182 | 1.59e-72 | 217 |
| Msa0756600 | MtrunA17_Chr1g0188111 | 50.556 | 180 | 89 | 0 | 1 | 180 | 1 | 180 | 6.15e-66 | 200 |
| Msa0756600 | MtrunA17_Chr8g0373271 | 47.590 | 166 | 84 | 3 | 18 | 181 | 17 | 181 | 2.68e-49 | 157 |
| Msa0756600 | MtrunA17_Chr2g0287721 | 34.682 | 173 | 102 | 2 | 10 | 173 | 10 | 180 | 3.17e-36 | 125 |
| Msa0756600 | MtrunA17_Chr5g0434561 | 34.337 | 166 | 108 | 1 | 9 | 173 | 11 | 176 | 1.15e-30 | 110 |
| Msa0756600 | MtrunA17_Chr5g0401071 | 33.735 | 166 | 109 | 1 | 9 | 173 | 11 | 176 | 1.05e-29 | 107 |
| Msa0756600 | MtrunA17_Chr5g0395651 | 56.962 | 79 | 32 | 1 | 1 | 77 | 1 | 79 | 6.55e-27 | 97.4 |
| Msa0756600 | MtrunA17_Chr4g0012371 | 33.121 | 157 | 104 | 1 | 18 | 173 | 1 | 157 | 1.74e-26 | 99.0 |
| Msa0756600 | MtrunA17_Chr2g0294701 | 32.768 | 177 | 103 | 2 | 15 | 177 | 18 | 192 | 6.94e-26 | 98.2 |
| Msa0756600 | MtrunA17_Chr7g0271761 | 32.203 | 177 | 104 | 2 | 15 | 177 | 18 | 192 | 1.60e-25 | 97.4 |
| Msa0756600 | MtrunA17_Chr4g0068171 | 32.203 | 177 | 104 | 2 | 15 | 177 | 18 | 192 | 5.83e-24 | 93.2 |
| Msa0756600 | MtrunA17_Chr5g0395671 | 51.020 | 49 | 24 | 0 | 132 | 180 | 44 | 92 | 7.02e-14 | 64.3 |
| Msa0756600 | MtrunA17_Chr1g0180291 | 35.294 | 85 | 51 | 1 | 18 | 98 | 15 | 99 | 1.71e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0756600 | AT3G62290.3 | 87.222 | 180 | 23 | 0 | 1 | 180 | 1 | 180 | 3.23e-120 | 337 |
| Msa0756600 | AT3G62290.1 | 87.222 | 180 | 23 | 0 | 1 | 180 | 1 | 180 | 3.23e-120 | 337 |
| Msa0756600 | AT3G62290.2 | 87.222 | 180 | 23 | 0 | 1 | 180 | 1 | 180 | 3.23e-120 | 337 |
| Msa0756600 | AT1G10630.1 | 86.667 | 180 | 24 | 0 | 1 | 180 | 1 | 180 | 8.29e-120 | 336 |
| Msa0756600 | AT1G10630.2 | 86.667 | 180 | 24 | 0 | 1 | 180 | 1 | 180 | 8.29e-120 | 336 |
| Msa0756600 | AT5G14670.1 | 86.188 | 181 | 25 | 0 | 1 | 181 | 1 | 181 | 1.77e-119 | 336 |
| Msa0756600 | AT1G23490.1 | 86.667 | 180 | 24 | 0 | 1 | 180 | 1 | 180 | 1.81e-119 | 335 |
| Msa0756600 | AT1G70490.2 | 86.667 | 180 | 24 | 0 | 1 | 180 | 1 | 180 | 1.81e-119 | 335 |
| Msa0756600 | AT1G70490.7 | 86.667 | 180 | 24 | 0 | 1 | 180 | 1 | 180 | 1.81e-119 | 335 |
| Msa0756600 | AT1G70490.4 | 86.667 | 180 | 24 | 0 | 1 | 180 | 1 | 180 | 1.81e-119 | 335 |
| Msa0756600 | AT1G70490.3 | 86.667 | 180 | 24 | 0 | 1 | 180 | 1 | 180 | 1.81e-119 | 335 |
| Msa0756600 | AT1G70490.1 | 86.667 | 180 | 24 | 0 | 1 | 180 | 1 | 180 | 1.81e-119 | 335 |
| Msa0756600 | AT1G70490.6 | 86.667 | 180 | 24 | 0 | 1 | 180 | 1 | 180 | 1.81e-119 | 335 |
| Msa0756600 | AT1G70490.5 | 86.667 | 180 | 24 | 0 | 1 | 180 | 1 | 180 | 1.81e-119 | 335 |
| Msa0756600 | AT2G47170.2 | 86.667 | 180 | 24 | 0 | 1 | 180 | 1 | 180 | 2.68e-119 | 335 |
| Msa0756600 | AT2G47170.1 | 86.667 | 180 | 24 | 0 | 1 | 180 | 1 | 180 | 2.68e-119 | 335 |
| Msa0756600 | AT2G47170.3 | 86.667 | 180 | 24 | 0 | 1 | 180 | 1 | 180 | 2.68e-119 | 335 |
| Msa0756600 | AT5G14670.2 | 86.667 | 180 | 24 | 0 | 1 | 180 | 1 | 180 | 2.90e-119 | 335 |
| Msa0756600 | AT5G14670.3 | 86.667 | 180 | 24 | 0 | 1 | 180 | 1 | 180 | 2.90e-119 | 335 |
| Msa0756600 | AT2G15310.1 | 70.556 | 180 | 53 | 0 | 1 | 180 | 1 | 180 | 1.31e-93 | 271 |
| Msa0756600 | AT5G17060.2 | 58.659 | 179 | 74 | 0 | 1 | 179 | 1 | 179 | 6.77e-80 | 236 |
| Msa0756600 | AT5G17060.1 | 58.659 | 179 | 74 | 0 | 1 | 179 | 1 | 179 | 6.77e-80 | 236 |
| Msa0756600 | AT3G03120.1 | 59.322 | 177 | 72 | 0 | 1 | 177 | 1 | 177 | 3.06e-79 | 234 |
| Msa0756600 | AT2G24765.1 | 57.542 | 179 | 76 | 0 | 1 | 179 | 1 | 179 | 3.14e-78 | 231 |
| Msa0756600 | AT3G22950.1 | 51.667 | 180 | 87 | 0 | 1 | 180 | 1 | 180 | 4.30e-69 | 208 |
| Msa0756600 | AT3G22950.2 | 51.667 | 180 | 87 | 0 | 1 | 180 | 1 | 180 | 4.30e-69 | 208 |
| Msa0756600 | AT3G03120.2 | 61.538 | 130 | 50 | 0 | 1 | 130 | 1 | 130 | 3.59e-58 | 179 |
| Msa0756600 | AT2G24765.2 | 60.156 | 128 | 51 | 0 | 1 | 128 | 1 | 128 | 1.50e-55 | 172 |
| Msa0756600 | AT1G02430.1 | 46.774 | 186 | 89 | 4 | 1 | 176 | 1 | 186 | 4.16e-54 | 170 |
| Msa0756600 | AT1G02440.1 | 44.624 | 186 | 93 | 4 | 1 | 176 | 1 | 186 | 1.57e-53 | 169 |
| Msa0756600 | AT2G18390.1 | 47.590 | 166 | 84 | 3 | 18 | 181 | 17 | 181 | 2.59e-48 | 155 |
| Msa0756600 | AT1G02430.2 | 44.654 | 159 | 82 | 3 | 1 | 153 | 1 | 159 | 1.26e-42 | 140 |
| Msa0756600 | AT5G52210.1 | 32.955 | 176 | 111 | 1 | 5 | 173 | 5 | 180 | 2.02e-34 | 120 |
| Msa0756600 | AT5G52210.2 | 32.955 | 176 | 111 | 1 | 5 | 173 | 5 | 180 | 2.02e-34 | 120 |
| Msa0756600 | AT3G49870.1 | 34.940 | 166 | 107 | 1 | 9 | 173 | 11 | 176 | 3.99e-32 | 114 |
| Msa0756600 | AT5G67560.1 | 34.337 | 166 | 108 | 1 | 9 | 173 | 11 | 176 | 1.01e-31 | 113 |
| Msa0756600 | AT3G49870.2 | 35.032 | 157 | 101 | 1 | 18 | 173 | 1 | 157 | 6.75e-30 | 108 |
| Msa0756600 | AT5G37680.1 | 33.133 | 166 | 110 | 1 | 9 | 173 | 11 | 176 | 7.43e-30 | 108 |
| Msa0756600 | AT3G49860.1 | 34.940 | 166 | 107 | 1 | 16 | 180 | 10 | 175 | 2.01e-29 | 107 |
| Msa0756600 | AT3G62560.1 | 32.768 | 177 | 103 | 2 | 15 | 177 | 18 | 192 | 1.32e-25 | 97.8 |
| Msa0756600 | AT4G02080.1 | 32.000 | 175 | 107 | 2 | 15 | 177 | 18 | 192 | 4.61e-25 | 96.3 |
| Msa0756600 | AT1G56330.1 | 32.584 | 178 | 104 | 2 | 15 | 178 | 18 | 193 | 5.65e-25 | 96.3 |
| Msa0756600 | AT1G02440.2 | 31.818 | 154 | 69 | 2 | 1 | 153 | 1 | 119 | 1.01e-24 | 93.6 |
| Msa0756600 | AT1G09180.1 | 32.584 | 178 | 104 | 2 | 14 | 177 | 17 | 192 | 1.17e-24 | 95.5 |
| Msa0756600 | AT5G37680.2 | 33.594 | 128 | 85 | 0 | 46 | 173 | 2 | 129 | 4.16e-24 | 92.4 |
Find 39 sgRNAs with CRISPR-Local
Find 136 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTTGGAAGGTCTTGCTTAT+TGG | 0.247726 | 5_2:-10932032 | None:intergenic |
| AAAATGTCAGCTTCACTGTC+TGG | 0.376569 | 5_2:+10931492 | Msa0756600:CDS |
| TCTGCAACGCTCAAAGCATT+TGG | 0.394687 | 5_2:-10932049 | None:intergenic |
| TGTATTGTTTGCTTATATAC+TGG | 0.402519 | 5_2:+10932401 | Msa0756600:three_prime_UTR |
| ATAGTGATTGATATTATAGT+TGG | 0.409476 | 5_2:-10932462 | None:intergenic |
| AGCTTCACTGTCTGGGATGT+TGG | 0.414580 | 5_2:+10931500 | Msa0756600:CDS |
| GACTCTATGAAGGCCTTGAT+TGG | 0.421761 | 5_2:+10932268 | Msa0756600:CDS |
| CAGTCAACTTGTGCCACGTC+TGG | 0.434429 | 5_2:+10932240 | Msa0756600:CDS |
| TTGTTATGATTTATGAAAGA+AGG | 0.446024 | 5_2:-10931111 | None:intergenic |
| TGTTATGATTTATGAAAGAA+GGG | 0.456184 | 5_2:-10931110 | None:intergenic |
| TACACAAGGTCTTATCTTTG+TGG | 0.464373 | 5_2:+10931804 | Msa0756600:CDS |
| CAGACGTGGCACAAGTTGAC+TGG | 0.490705 | 5_2:-10932239 | None:intergenic |
| TAATTGTTCAAATTAACAAA+AGG | 0.492560 | 5_2:-10932438 | None:intergenic |
| CATTCTATGAAGTTCATCTC+TGG | 0.495248 | 5_2:-10931860 | None:intergenic |
| TTTGGAACCTATGGTTGGTA+TGG | 0.503874 | 5_2:-10931334 | None:intergenic |
| TTTATGCAAAGAAAGAAATG+AGG | 0.508896 | 5_2:+10931235 | Msa0756600:CDS |
| GCAGAAATTACTGATAAACT+TGG | 0.510496 | 5_2:+10932067 | Msa0756600:CDS |
| ATTCACTTCGCCAGCGTCGT+TGG | 0.511745 | 5_2:+10932095 | Msa0756600:CDS |
| ATACTCTACAAACTGAAGCT+TGG | 0.516539 | 5_2:+10931297 | Msa0756600:CDS |
| AAATGTCAGCTTCACTGTCT+GGG | 0.518950 | 5_2:+10931493 | Msa0756600:CDS |
| ATGGTAGGTCTTGATGCTGC+TGG | 0.522575 | 5_2:+10931264 | Msa0756600:CDS |
| TTCACTGTCTGGGATGTTGG+AGG | 0.531178 | 5_2:+10931503 | Msa0756600:CDS |
| TGTTACTTGATAACCAATCA+AGG | 0.534396 | 5_2:-10932281 | None:intergenic |
| ATTGGCAAATACAAGTAAAG+TGG | 0.538360 | 5_2:-10932014 | None:intergenic |
| GACTATTTGGAACCTATGGT+TGG | 0.543143 | 5_2:-10931339 | None:intergenic |
| GAAAGAAATGAGGATTCTGA+TGG | 0.583316 | 5_2:+10931245 | Msa0756600:CDS |
| GAAATGAGGATTCTGATGGT+AGG | 0.584694 | 5_2:+10931249 | Msa0756600:CDS |
| ACTTGTGCCACGTCTGGACA+AGG | 0.593035 | 5_2:+10932246 | Msa0756600:CDS |
| TCGTGTAGATTCGACCATTG+TGG | 0.593428 | 5_2:+10931764 | Msa0756600:intron |
| TCTGGACAAGGACTCTATGA+AGG | 0.595755 | 5_2:+10932258 | Msa0756600:CDS |
| CAACGCTCAAAGCATTTGGA+AGG | 0.597973 | 5_2:-10932045 | None:intergenic |
| TGATTTATGAAAGAAGGGGA+AGG | 0.605479 | 5_2:-10931105 | None:intergenic |
| TGAAAATAGTGTCTCCACAA+TGG | 0.619967 | 5_2:-10931778 | None:intergenic |
| ATAGAGTCCTTGTCCAGACG+TGG | 0.637305 | 5_2:-10932253 | None:intergenic |
| GGATGTTGGAGGACAAGACA+AGG | 0.648549 | 5_2:+10931514 | Msa0756600:CDS |
| AAATGGGGTTGACAGTGTCA+CGG | 0.652051 | 5_2:+10931199 | Msa0756600:exon |
| GTCACTACCATACCAACCAT+AGG | 0.654409 | 5_2:+10931327 | Msa0756600:CDS |
| GTTATGATTTATGAAAGAAG+GGG | 0.657634 | 5_2:-10931109 | None:intergenic |
| ACTTCATAGAATGCTTAGTG+AGG | 0.676324 | 5_2:+10931870 | Msa0756600:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATAGATATTATTTTTCAA+TGG | - | chr5_2:10931364-10931383 | None:intergenic | 10.0% |
| !!! | AAATAGATATTATTTTTCAA+TGG | - | chr5_2:10931364-10931383 | None:intergenic | 10.0% |
| !!! | ATTCAAGTTTTATACTTTTT+AGG | + | chr5_2:10931149-10931168 | Msa0756600:five_prime_UTR | 15.0% |
| !!! | TTCAAGTTTTATACTTTTTA+GGG | + | chr5_2:10931150-10931169 | Msa0756600:five_prime_UTR | 15.0% |
| !! | CTTGTTTAATAATAATAATG+AGG | + | chr5_2:10931600-10931619 | Msa0756600:intron | 15.0% |
| !! | TAATTGTTCAAATTAACAAA+AGG | - | chr5_2:10932441-10932460 | None:intergenic | 15.0% |
| !!! | ATTCAAGTTTTATACTTTTT+AGG | + | chr5_2:10931149-10931168 | Msa0756600:five_prime_UTR | 15.0% |
| !!! | TTCAAGTTTTATACTTTTTA+GGG | + | chr5_2:10931150-10931169 | Msa0756600:five_prime_UTR | 15.0% |
| !! | CTTGTTTAATAATAATAATG+AGG | + | chr5_2:10931600-10931619 | Msa0756600:intron | 15.0% |
| !! | TAATTGTTCAAATTAACAAA+AGG | - | chr5_2:10932441-10932460 | None:intergenic | 15.0% |
| !! | TGTTATGATTTATGAAAGAA+GGG | - | chr5_2:10931113-10931132 | None:intergenic | 20.0% |
| !! | TTGTTATGATTTATGAAAGA+AGG | - | chr5_2:10931114-10931133 | None:intergenic | 20.0% |
| !!! | CTAAATTTTGATTGAAACTA+AGG | + | chr5_2:10931173-10931192 | Msa0756600:five_prime_UTR | 20.0% |
| !! | ATTGAAACTAAGGTAAAAAT+GGG | + | chr5_2:10931183-10931202 | Msa0756600:exon | 20.0% |
| !!! | TTATTTTTCAATGGACTATT+TGG | - | chr5_2:10931355-10931374 | None:intergenic | 20.0% |
| !!! | TATTTCACTTTTATGTTGAA+AGG | - | chr5_2:10931942-10931961 | None:intergenic | 20.0% |
| !! | TTAATAAGCATTTACATTGT+AGG | + | chr5_2:10931976-10931995 | Msa0756600:intron | 20.0% |
| !! | TTACTTTGATCTTTATCATA+TGG | + | chr5_2:10932335-10932354 | Msa0756600:intron | 20.0% |
| !! | ATAGTGATTGATATTATAGT+TGG | - | chr5_2:10932465-10932484 | None:intergenic | 20.0% |
| !! | TGTTATGATTTATGAAAGAA+GGG | - | chr5_2:10931113-10931132 | None:intergenic | 20.0% |
| !! | TTGTTATGATTTATGAAAGA+AGG | - | chr5_2:10931114-10931133 | None:intergenic | 20.0% |
| !!! | CTAAATTTTGATTGAAACTA+AGG | + | chr5_2:10931173-10931192 | Msa0756600:five_prime_UTR | 20.0% |
| !! | ATTGAAACTAAGGTAAAAAT+GGG | + | chr5_2:10931183-10931202 | Msa0756600:exon | 20.0% |
| !!! | TTATTTTTCAATGGACTATT+TGG | - | chr5_2:10931355-10931374 | None:intergenic | 20.0% |
| !!! | TATTTCACTTTTATGTTGAA+AGG | - | chr5_2:10931942-10931961 | None:intergenic | 20.0% |
| !! | TTAATAAGCATTTACATTGT+AGG | + | chr5_2:10931976-10931995 | Msa0756600:intron | 20.0% |
| !! | TTACTTTGATCTTTATCATA+TGG | + | chr5_2:10932335-10932354 | Msa0756600:intron | 20.0% |
| !! | ATAGTGATTGATATTATAGT+TGG | - | chr5_2:10932465-10932484 | None:intergenic | 20.0% |
| ! | GTTATGATTTATGAAAGAAG+GGG | - | chr5_2:10931112-10931131 | None:intergenic | 25.0% |
| ! | GATTGAAACTAAGGTAAAAA+TGG | + | chr5_2:10931182-10931201 | Msa0756600:exon | 25.0% |
| ! | TTGAAACTAAGGTAAAAATG+GGG | + | chr5_2:10931184-10931203 | Msa0756600:exon | 25.0% |
| ! | TTTATGCAAAGAAAGAAATG+AGG | + | chr5_2:10931235-10931254 | Msa0756600:CDS | 25.0% |
| ! | TTAAAATGATCATAGGGAAT+AGG | - | chr5_2:10931396-10931415 | None:intergenic | 25.0% |
| ! | TTTCGCTTAAAATGATCATA+GGG | - | chr5_2:10931402-10931421 | None:intergenic | 25.0% |
| !! | TTTTCGCTTAAAATGATCAT+AGG | - | chr5_2:10931403-10931422 | None:intergenic | 25.0% |
| ! | TTTAATGTCTCAAATGAATC+AGG | + | chr5_2:10931443-10931462 | Msa0756600:intron | 25.0% |
| !! | ACTTGTTAGAACATATAAGA+AGG | - | chr5_2:10931692-10931711 | None:intergenic | 25.0% |
| ! | ATAATTCAAAGTTGAGTTCA+GGG | + | chr5_2:10932192-10932211 | Msa0756600:intron | 25.0% |
| ! | TGTATTGTTTGCTTATATAC+TGG | + | chr5_2:10932401-10932420 | Msa0756600:three_prime_UTR | 25.0% |
| ! | GTTATGATTTATGAAAGAAG+GGG | - | chr5_2:10931112-10931131 | None:intergenic | 25.0% |
| ! | GATTGAAACTAAGGTAAAAA+TGG | + | chr5_2:10931182-10931201 | Msa0756600:exon | 25.0% |
| ! | TTGAAACTAAGGTAAAAATG+GGG | + | chr5_2:10931184-10931203 | Msa0756600:exon | 25.0% |
| ! | TTTATGCAAAGAAAGAAATG+AGG | + | chr5_2:10931235-10931254 | Msa0756600:CDS | 25.0% |
| ! | TTAAAATGATCATAGGGAAT+AGG | - | chr5_2:10931396-10931415 | None:intergenic | 25.0% |
| ! | TTTCGCTTAAAATGATCATA+GGG | - | chr5_2:10931402-10931421 | None:intergenic | 25.0% |
| !! | TTTTCGCTTAAAATGATCAT+AGG | - | chr5_2:10931403-10931422 | None:intergenic | 25.0% |
| ! | TTTAATGTCTCAAATGAATC+AGG | + | chr5_2:10931443-10931462 | Msa0756600:intron | 25.0% |
| !! | ACTTGTTAGAACATATAAGA+AGG | - | chr5_2:10931692-10931711 | None:intergenic | 25.0% |
| ! | ATAATTCAAAGTTGAGTTCA+GGG | + | chr5_2:10932192-10932211 | Msa0756600:intron | 25.0% |
| ! | TGTATTGTTTGCTTATATAC+TGG | + | chr5_2:10932401-10932420 | Msa0756600:three_prime_UTR | 25.0% |
| ! | TCTAGTTTGCAATATGAACA+TGG | - | chr5_2:10931572-10931591 | None:intergenic | 30.0% |
| AGGTAATTCAGTTTGAACAT+CGG | + | chr5_2:10931620-10931639 | Msa0756600:intron | 30.0% | |
| CATAGTTCAATCAAGTGAAA+GGG | - | chr5_2:10931653-10931672 | None:intergenic | 30.0% | |
| TCATAGTTCAATCAAGTGAA+AGG | - | chr5_2:10931654-10931673 | None:intergenic | 30.0% | |
| GTTAGAACATATAAGAAGGT+TGG | - | chr5_2:10931688-10931707 | None:intergenic | 30.0% | |
| ! | CACTATTTTCAGAATACACA+AGG | + | chr5_2:10931790-10931809 | Msa0756600:CDS | 30.0% |
| ATTGGCAAATACAAGTAAAG+TGG | - | chr5_2:10932017-10932036 | None:intergenic | 30.0% | |
| GCAGAAATTACTGATAAACT+TGG | + | chr5_2:10932067-10932086 | Msa0756600:CDS | 30.0% | |
| CATAATTCAAAGTTGAGTTC+AGG | + | chr5_2:10932191-10932210 | Msa0756600:intron | 30.0% | |
| ! | TGTTACTTGATAACCAATCA+AGG | - | chr5_2:10932284-10932303 | None:intergenic | 30.0% |
| ! | TCTAGTTTGCAATATGAACA+TGG | - | chr5_2:10931572-10931591 | None:intergenic | 30.0% |
| AGGTAATTCAGTTTGAACAT+CGG | + | chr5_2:10931620-10931639 | Msa0756600:intron | 30.0% | |
| CATAGTTCAATCAAGTGAAA+GGG | - | chr5_2:10931653-10931672 | None:intergenic | 30.0% | |
| TCATAGTTCAATCAAGTGAA+AGG | - | chr5_2:10931654-10931673 | None:intergenic | 30.0% | |
| GTTAGAACATATAAGAAGGT+TGG | - | chr5_2:10931688-10931707 | None:intergenic | 30.0% | |
| ! | CACTATTTTCAGAATACACA+AGG | + | chr5_2:10931790-10931809 | Msa0756600:CDS | 30.0% |
| ATTGGCAAATACAAGTAAAG+TGG | - | chr5_2:10932017-10932036 | None:intergenic | 30.0% | |
| GCAGAAATTACTGATAAACT+TGG | + | chr5_2:10932067-10932086 | Msa0756600:CDS | 30.0% | |
| CATAATTCAAAGTTGAGTTC+AGG | + | chr5_2:10932191-10932210 | Msa0756600:intron | 30.0% | |
| ! | TGTTACTTGATAACCAATCA+AGG | - | chr5_2:10932284-10932303 | None:intergenic | 30.0% |
| TGATTTATGAAAGAAGGGGA+AGG | - | chr5_2:10931108-10931127 | None:intergenic | 35.0% | |
| GAAAGAAATGAGGATTCTGA+TGG | + | chr5_2:10931245-10931264 | Msa0756600:CDS | 35.0% | |
| ATACTCTACAAACTGAAGCT+TGG | + | chr5_2:10931297-10931316 | Msa0756600:CDS | 35.0% | |
| !! | AATGGACTATTTGGAACCTA+TGG | - | chr5_2:10931346-10931365 | None:intergenic | 35.0% |
| TGAAAATAGTGTCTCCACAA+TGG | - | chr5_2:10931781-10931800 | None:intergenic | 35.0% | |
| ! | TACACAAGGTCTTATCTTTG+TGG | + | chr5_2:10931804-10931823 | Msa0756600:CDS | 35.0% |
| CATTCTATGAAGTTCATCTC+TGG | - | chr5_2:10931863-10931882 | None:intergenic | 35.0% | |
| ACTTCATAGAATGCTTAGTG+AGG | + | chr5_2:10931870-10931889 | Msa0756600:CDS | 35.0% | |
| ATTTGGAAGGTCTTGCTTAT+TGG | - | chr5_2:10932035-10932054 | None:intergenic | 35.0% | |
| TGATTTATGAAAGAAGGGGA+AGG | - | chr5_2:10931108-10931127 | None:intergenic | 35.0% | |
| GAAAGAAATGAGGATTCTGA+TGG | + | chr5_2:10931245-10931264 | Msa0756600:CDS | 35.0% | |
| ATACTCTACAAACTGAAGCT+TGG | + | chr5_2:10931297-10931316 | Msa0756600:CDS | 35.0% | |
| !! | AATGGACTATTTGGAACCTA+TGG | - | chr5_2:10931346-10931365 | None:intergenic | 35.0% |
| TGAAAATAGTGTCTCCACAA+TGG | - | chr5_2:10931781-10931800 | None:intergenic | 35.0% | |
| ! | TACACAAGGTCTTATCTTTG+TGG | + | chr5_2:10931804-10931823 | Msa0756600:CDS | 35.0% |
| CATTCTATGAAGTTCATCTC+TGG | - | chr5_2:10931863-10931882 | None:intergenic | 35.0% | |
| ACTTCATAGAATGCTTAGTG+AGG | + | chr5_2:10931870-10931889 | Msa0756600:CDS | 35.0% | |
| ATTTGGAAGGTCTTGCTTAT+TGG | - | chr5_2:10932035-10932054 | None:intergenic | 35.0% | |
| GAAATGAGGATTCTGATGGT+AGG | + | chr5_2:10931249-10931268 | Msa0756600:CDS | 40.0% | |
| ! | TTTGGAACCTATGGTTGGTA+TGG | - | chr5_2:10931337-10931356 | None:intergenic | 40.0% |
| ! | GACTATTTGGAACCTATGGT+TGG | - | chr5_2:10931342-10931361 | None:intergenic | 40.0% |
| AAAATGTCAGCTTCACTGTC+TGG | + | chr5_2:10931492-10931511 | Msa0756600:CDS | 40.0% | |
| AAATGTCAGCTTCACTGTCT+GGG | + | chr5_2:10931493-10931512 | Msa0756600:CDS | 40.0% | |
| GAAATGAGGATTCTGATGGT+AGG | + | chr5_2:10931249-10931268 | Msa0756600:CDS | 40.0% | |
| ! | TTTGGAACCTATGGTTGGTA+TGG | - | chr5_2:10931337-10931356 | None:intergenic | 40.0% |
| ! | GACTATTTGGAACCTATGGT+TGG | - | chr5_2:10931342-10931361 | None:intergenic | 40.0% |
| AAAATGTCAGCTTCACTGTC+TGG | + | chr5_2:10931492-10931511 | Msa0756600:CDS | 40.0% | |
| AAATGTCAGCTTCACTGTCT+GGG | + | chr5_2:10931493-10931512 | Msa0756600:CDS | 40.0% | |
| AAATGGGGTTGACAGTGTCA+CGG | + | chr5_2:10931199-10931218 | Msa0756600:exon | 45.0% | |
| GTCACTACCATACCAACCAT+AGG | + | chr5_2:10931327-10931346 | Msa0756600:CDS | 45.0% | |
| TCGTGTAGATTCGACCATTG+TGG | + | chr5_2:10931764-10931783 | Msa0756600:intron | 45.0% | |
| ! | CAACGCTCAAAGCATTTGGA+AGG | - | chr5_2:10932048-10932067 | None:intergenic | 45.0% |
| ! | TCTGCAACGCTCAAAGCATT+TGG | - | chr5_2:10932052-10932071 | None:intergenic | 45.0% |
| !! | AGGGTGTTTTTGATCCGTTC+AGG | + | chr5_2:10932211-10932230 | Msa0756600:intron | 45.0% |
| GTTGACTGGATGTACCTGAA+CGG | - | chr5_2:10932228-10932247 | None:intergenic | 45.0% | |
| TCTGGACAAGGACTCTATGA+AGG | + | chr5_2:10932258-10932277 | Msa0756600:CDS | 45.0% | |
| GACTCTATGAAGGCCTTGAT+TGG | + | chr5_2:10932268-10932287 | Msa0756600:CDS | 45.0% | |
| AAATGGGGTTGACAGTGTCA+CGG | + | chr5_2:10931199-10931218 | Msa0756600:exon | 45.0% | |
| GTCACTACCATACCAACCAT+AGG | + | chr5_2:10931327-10931346 | Msa0756600:CDS | 45.0% | |
| TCGTGTAGATTCGACCATTG+TGG | + | chr5_2:10931764-10931783 | Msa0756600:intron | 45.0% | |
| ! | CAACGCTCAAAGCATTTGGA+AGG | - | chr5_2:10932048-10932067 | None:intergenic | 45.0% |
| ! | TCTGCAACGCTCAAAGCATT+TGG | - | chr5_2:10932052-10932071 | None:intergenic | 45.0% |
| !! | AGGGTGTTTTTGATCCGTTC+AGG | + | chr5_2:10932211-10932230 | Msa0756600:intron | 45.0% |
| GTTGACTGGATGTACCTGAA+CGG | - | chr5_2:10932228-10932247 | None:intergenic | 45.0% | |
| TCTGGACAAGGACTCTATGA+AGG | + | chr5_2:10932258-10932277 | Msa0756600:CDS | 45.0% | |
| GACTCTATGAAGGCCTTGAT+TGG | + | chr5_2:10932268-10932287 | Msa0756600:CDS | 45.0% | |
| ATGGTAGGTCTTGATGCTGC+TGG | + | chr5_2:10931264-10931283 | Msa0756600:CDS | 50.0% | |
| ! | AGCTTCACTGTCTGGGATGT+TGG | + | chr5_2:10931500-10931519 | Msa0756600:CDS | 50.0% |
| ! | TTCACTGTCTGGGATGTTGG+AGG | + | chr5_2:10931503-10931522 | Msa0756600:CDS | 50.0% |
| GGATGTTGGAGGACAAGACA+AGG | + | chr5_2:10931514-10931533 | Msa0756600:CDS | 50.0% | |
| ATAGAGTCCTTGTCCAGACG+TGG | - | chr5_2:10932256-10932275 | None:intergenic | 50.0% | |
| ATGGTAGGTCTTGATGCTGC+TGG | + | chr5_2:10931264-10931283 | Msa0756600:CDS | 50.0% | |
| ! | AGCTTCACTGTCTGGGATGT+TGG | + | chr5_2:10931500-10931519 | Msa0756600:CDS | 50.0% |
| ! | TTCACTGTCTGGGATGTTGG+AGG | + | chr5_2:10931503-10931522 | Msa0756600:CDS | 50.0% |
| GGATGTTGGAGGACAAGACA+AGG | + | chr5_2:10931514-10931533 | Msa0756600:CDS | 50.0% | |
| ATAGAGTCCTTGTCCAGACG+TGG | - | chr5_2:10932256-10932275 | None:intergenic | 50.0% | |
| ATTCACTTCGCCAGCGTCGT+TGG | + | chr5_2:10932095-10932114 | Msa0756600:CDS | 55.0% | |
| ACGTGACTTACCAACGACGC+TGG | - | chr5_2:10932108-10932127 | None:intergenic | 55.0% | |
| ! | CAGACGTGGCACAAGTTGAC+TGG | - | chr5_2:10932242-10932261 | None:intergenic | 55.0% |
| CAGTCAACTTGTGCCACGTC+TGG | + | chr5_2:10932240-10932259 | Msa0756600:CDS | 55.0% | |
| ACTTGTGCCACGTCTGGACA+AGG | + | chr5_2:10932246-10932265 | Msa0756600:CDS | 55.0% | |
| ATTCACTTCGCCAGCGTCGT+TGG | + | chr5_2:10932095-10932114 | Msa0756600:CDS | 55.0% | |
| ACGTGACTTACCAACGACGC+TGG | - | chr5_2:10932108-10932127 | None:intergenic | 55.0% | |
| ! | CAGACGTGGCACAAGTTGAC+TGG | - | chr5_2:10932242-10932261 | None:intergenic | 55.0% |
| CAGTCAACTTGTGCCACGTC+TGG | + | chr5_2:10932240-10932259 | Msa0756600:CDS | 55.0% | |
| ACTTGTGCCACGTCTGGACA+AGG | + | chr5_2:10932246-10932265 | Msa0756600:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 10931105 | 10932496 | 10931105 | ID=Msa0756600;Name=Msa0756600 |
| chr5_2 | mRNA | 10931105 | 10932496 | 10931105 | ID=Msa0756600-mRNA-1;Parent=Msa0756600;Name=Msa0756600-mRNA-1;_AED=0.17;_eAED=0.17;_QI=96|1|1|1|0.8|0.66|6|152|182 |
| chr5_2 | exon | 10931105 | 10931348 | 10931105 | ID=Msa0756600-mRNA-1:exon:4931;Parent=Msa0756600-mRNA-1 |
| chr5_2 | exon | 10931465 | 10931535 | 10931465 | ID=Msa0756600-mRNA-1:exon:4932;Parent=Msa0756600-mRNA-1 |
| chr5_2 | exon | 10931772 | 10931891 | 10931772 | ID=Msa0756600-mRNA-1:exon:4933;Parent=Msa0756600-mRNA-1 |
| chr5_2 | exon | 10931998 | 10932116 | 10931998 | ID=Msa0756600-mRNA-1:exon:4934;Parent=Msa0756600-mRNA-1 |
| chr5_2 | exon | 10932233 | 10932342 | 10932233 | ID=Msa0756600-mRNA-1:exon:4935;Parent=Msa0756600-mRNA-1 |
| chr5_2 | exon | 10932364 | 10932496 | 10932364 | ID=Msa0756600-mRNA-1:exon:4936;Parent=Msa0756600-mRNA-1 |
| chr5_2 | five_prime_UTR | 10931105 | 10931200 | 10931105 | ID=Msa0756600-mRNA-1:five_prime_utr;Parent=Msa0756600-mRNA-1 |
| chr5_2 | CDS | 10931201 | 10931348 | 10931201 | ID=Msa0756600-mRNA-1:cds;Parent=Msa0756600-mRNA-1 |
| chr5_2 | CDS | 10931465 | 10931535 | 10931465 | ID=Msa0756600-mRNA-1:cds;Parent=Msa0756600-mRNA-1 |
| chr5_2 | CDS | 10931772 | 10931891 | 10931772 | ID=Msa0756600-mRNA-1:cds;Parent=Msa0756600-mRNA-1 |
| chr5_2 | CDS | 10931998 | 10932116 | 10931998 | ID=Msa0756600-mRNA-1:cds;Parent=Msa0756600-mRNA-1 |
| chr5_2 | CDS | 10932233 | 10932323 | 10932233 | ID=Msa0756600-mRNA-1:cds;Parent=Msa0756600-mRNA-1 |
| chr5_2 | three_prime_UTR | 10932324 | 10932342 | 10932324 | ID=Msa0756600-mRNA-1:three_prime_utr;Parent=Msa0756600-mRNA-1 |
| chr5_2 | three_prime_UTR | 10932364 | 10932496 | 10932364 | ID=Msa0756600-mRNA-1:three_prime_utr;Parent=Msa0756600-mRNA-1 |
| Gene Sequence |
| Protein sequence |
