Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0755740 | sp|P51823|ARF2_ORYSJ | 88.333 | 180 | 21 | 0 | 1 | 180 | 1 | 180 | 1.50e-120 | 341 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0755740 | G7K590 | 99.451 | 182 | 1 | 0 | 1 | 182 | 1 | 182 | 5.17e-131 | 374 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0026670 | Msa0755740 | 0.817359 | 3.436203e-52 | -8.615850e-47 |
| Msa0064550 | Msa0755740 | 0.804754 | 1.856001e-49 | -8.615850e-47 |
| Msa0109490 | Msa0755740 | 0.812692 | 3.731316e-51 | -8.615850e-47 |
| Msa0755740 | Msa0756600 | 0.911369 | 6.578186e-83 | -8.615850e-47 |
| Msa0755740 | Msa0788360 | 0.802539 | 5.347565e-49 | -8.615850e-47 |
| Msa0755740 | Msa0826650 | 0.803303 | 3.717011e-49 | -8.615850e-47 |
| Msa0755740 | Msa0835920 | 0.843928 | 1.036333e-58 | -8.615850e-47 |
| Msa0755740 | Msa0864690 | 0.806831 | 6.795491e-50 | -8.615850e-47 |
| Msa0755740 | Msa1353760 | 0.835088 | 2.056994e-56 | -8.615850e-47 |
| Msa0755740 | Msa1457180 | 0.844227 | 8.613129e-59 | -8.615850e-47 |
| Msa0145180 | Msa0755740 | 0.813907 | 2.018050e-51 | -8.615850e-47 |
| Msa0535020 | Msa0755740 | 0.819193 | 1.320774e-52 | -8.615850e-47 |
| Msa0535050 | Msa0755740 | 0.817332 | 3.483814e-52 | -8.615850e-47 |
| Msa0591780 | Msa0755740 | 0.813733 | 2.204422e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0755740 | MtrunA17_Chr5g0401761 | 99.451 | 182 | 1 | 0 | 1 | 182 | 1 | 182 | 9.95e-135 | 374 |
| Msa0755740 | MtrunA17_Chr5g0413451 | 87.778 | 180 | 22 | 0 | 1 | 180 | 1 | 180 | 4.36e-121 | 339 |
| Msa0755740 | MtrunA17_Chr5g0413441 | 87.778 | 180 | 22 | 0 | 1 | 180 | 1 | 180 | 4.36e-121 | 339 |
| Msa0755740 | MtrunA17_Chr1g0194261 | 87.222 | 180 | 23 | 0 | 1 | 180 | 1 | 180 | 1.59e-120 | 338 |
| Msa0755740 | MtrunA17_Chr6g0450081 | 87.222 | 180 | 23 | 0 | 1 | 180 | 1 | 180 | 2.64e-120 | 337 |
| Msa0755740 | MtrunA17_Chr7g0270301 | 86.667 | 180 | 24 | 0 | 1 | 180 | 1 | 180 | 6.56e-120 | 336 |
| Msa0755740 | MtrunA17_Chr5g0395631 | 59.887 | 177 | 71 | 0 | 1 | 177 | 1 | 177 | 1.60e-80 | 237 |
| Msa0755740 | MtrunA17_Chr4g0039591 | 58.757 | 177 | 73 | 0 | 1 | 177 | 1 | 177 | 1.33e-77 | 230 |
| Msa0755740 | MtrunA17_Chr4g0072861 | 56.983 | 179 | 77 | 0 | 1 | 179 | 1 | 179 | 4.88e-77 | 228 |
| Msa0755740 | MtrunA17_Chr5g0395641 | 53.297 | 182 | 83 | 1 | 1 | 180 | 1 | 182 | 1.59e-72 | 217 |
| Msa0755740 | MtrunA17_Chr1g0188111 | 50.556 | 180 | 89 | 0 | 1 | 180 | 1 | 180 | 6.15e-66 | 200 |
| Msa0755740 | MtrunA17_Chr8g0373271 | 47.590 | 166 | 84 | 3 | 18 | 181 | 17 | 181 | 2.68e-49 | 157 |
| Msa0755740 | MtrunA17_Chr2g0287721 | 34.682 | 173 | 102 | 2 | 10 | 173 | 10 | 180 | 3.17e-36 | 125 |
| Msa0755740 | MtrunA17_Chr5g0434561 | 34.337 | 166 | 108 | 1 | 9 | 173 | 11 | 176 | 1.15e-30 | 110 |
| Msa0755740 | MtrunA17_Chr5g0401071 | 33.735 | 166 | 109 | 1 | 9 | 173 | 11 | 176 | 1.05e-29 | 107 |
| Msa0755740 | MtrunA17_Chr5g0395651 | 56.962 | 79 | 32 | 1 | 1 | 77 | 1 | 79 | 6.55e-27 | 97.4 |
| Msa0755740 | MtrunA17_Chr4g0012371 | 33.121 | 157 | 104 | 1 | 18 | 173 | 1 | 157 | 1.74e-26 | 99.0 |
| Msa0755740 | MtrunA17_Chr2g0294701 | 32.768 | 177 | 103 | 2 | 15 | 177 | 18 | 192 | 6.94e-26 | 98.2 |
| Msa0755740 | MtrunA17_Chr7g0271761 | 32.203 | 177 | 104 | 2 | 15 | 177 | 18 | 192 | 1.60e-25 | 97.4 |
| Msa0755740 | MtrunA17_Chr4g0068171 | 32.203 | 177 | 104 | 2 | 15 | 177 | 18 | 192 | 5.83e-24 | 93.2 |
| Msa0755740 | MtrunA17_Chr5g0395671 | 51.020 | 49 | 24 | 0 | 132 | 180 | 44 | 92 | 7.02e-14 | 64.3 |
| Msa0755740 | MtrunA17_Chr1g0180291 | 35.294 | 85 | 51 | 1 | 18 | 98 | 15 | 99 | 1.71e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0755740 | AT3G62290.3 | 87.222 | 180 | 23 | 0 | 1 | 180 | 1 | 180 | 3.23e-120 | 337 |
| Msa0755740 | AT3G62290.1 | 87.222 | 180 | 23 | 0 | 1 | 180 | 1 | 180 | 3.23e-120 | 337 |
| Msa0755740 | AT3G62290.2 | 87.222 | 180 | 23 | 0 | 1 | 180 | 1 | 180 | 3.23e-120 | 337 |
| Msa0755740 | AT1G10630.1 | 86.667 | 180 | 24 | 0 | 1 | 180 | 1 | 180 | 8.29e-120 | 336 |
| Msa0755740 | AT1G10630.2 | 86.667 | 180 | 24 | 0 | 1 | 180 | 1 | 180 | 8.29e-120 | 336 |
| Msa0755740 | AT5G14670.1 | 86.188 | 181 | 25 | 0 | 1 | 181 | 1 | 181 | 1.77e-119 | 336 |
| Msa0755740 | AT1G23490.1 | 86.667 | 180 | 24 | 0 | 1 | 180 | 1 | 180 | 1.81e-119 | 335 |
| Msa0755740 | AT1G70490.2 | 86.667 | 180 | 24 | 0 | 1 | 180 | 1 | 180 | 1.81e-119 | 335 |
| Msa0755740 | AT1G70490.7 | 86.667 | 180 | 24 | 0 | 1 | 180 | 1 | 180 | 1.81e-119 | 335 |
| Msa0755740 | AT1G70490.4 | 86.667 | 180 | 24 | 0 | 1 | 180 | 1 | 180 | 1.81e-119 | 335 |
| Msa0755740 | AT1G70490.3 | 86.667 | 180 | 24 | 0 | 1 | 180 | 1 | 180 | 1.81e-119 | 335 |
| Msa0755740 | AT1G70490.1 | 86.667 | 180 | 24 | 0 | 1 | 180 | 1 | 180 | 1.81e-119 | 335 |
| Msa0755740 | AT1G70490.6 | 86.667 | 180 | 24 | 0 | 1 | 180 | 1 | 180 | 1.81e-119 | 335 |
| Msa0755740 | AT1G70490.5 | 86.667 | 180 | 24 | 0 | 1 | 180 | 1 | 180 | 1.81e-119 | 335 |
| Msa0755740 | AT2G47170.2 | 86.667 | 180 | 24 | 0 | 1 | 180 | 1 | 180 | 2.68e-119 | 335 |
| Msa0755740 | AT2G47170.1 | 86.667 | 180 | 24 | 0 | 1 | 180 | 1 | 180 | 2.68e-119 | 335 |
| Msa0755740 | AT2G47170.3 | 86.667 | 180 | 24 | 0 | 1 | 180 | 1 | 180 | 2.68e-119 | 335 |
| Msa0755740 | AT5G14670.2 | 86.667 | 180 | 24 | 0 | 1 | 180 | 1 | 180 | 2.90e-119 | 335 |
| Msa0755740 | AT5G14670.3 | 86.667 | 180 | 24 | 0 | 1 | 180 | 1 | 180 | 2.90e-119 | 335 |
| Msa0755740 | AT2G15310.1 | 70.556 | 180 | 53 | 0 | 1 | 180 | 1 | 180 | 1.31e-93 | 271 |
| Msa0755740 | AT5G17060.2 | 58.659 | 179 | 74 | 0 | 1 | 179 | 1 | 179 | 6.77e-80 | 236 |
| Msa0755740 | AT5G17060.1 | 58.659 | 179 | 74 | 0 | 1 | 179 | 1 | 179 | 6.77e-80 | 236 |
| Msa0755740 | AT3G03120.1 | 59.322 | 177 | 72 | 0 | 1 | 177 | 1 | 177 | 3.06e-79 | 234 |
| Msa0755740 | AT2G24765.1 | 57.542 | 179 | 76 | 0 | 1 | 179 | 1 | 179 | 3.14e-78 | 231 |
| Msa0755740 | AT3G22950.1 | 51.667 | 180 | 87 | 0 | 1 | 180 | 1 | 180 | 4.30e-69 | 208 |
| Msa0755740 | AT3G22950.2 | 51.667 | 180 | 87 | 0 | 1 | 180 | 1 | 180 | 4.30e-69 | 208 |
| Msa0755740 | AT3G03120.2 | 61.538 | 130 | 50 | 0 | 1 | 130 | 1 | 130 | 3.59e-58 | 179 |
| Msa0755740 | AT2G24765.2 | 60.156 | 128 | 51 | 0 | 1 | 128 | 1 | 128 | 1.50e-55 | 172 |
| Msa0755740 | AT1G02430.1 | 46.774 | 186 | 89 | 4 | 1 | 176 | 1 | 186 | 4.16e-54 | 170 |
| Msa0755740 | AT1G02440.1 | 44.624 | 186 | 93 | 4 | 1 | 176 | 1 | 186 | 1.57e-53 | 169 |
| Msa0755740 | AT2G18390.1 | 47.590 | 166 | 84 | 3 | 18 | 181 | 17 | 181 | 2.59e-48 | 155 |
| Msa0755740 | AT1G02430.2 | 44.654 | 159 | 82 | 3 | 1 | 153 | 1 | 159 | 1.26e-42 | 140 |
| Msa0755740 | AT5G52210.1 | 32.955 | 176 | 111 | 1 | 5 | 173 | 5 | 180 | 2.02e-34 | 120 |
| Msa0755740 | AT5G52210.2 | 32.955 | 176 | 111 | 1 | 5 | 173 | 5 | 180 | 2.02e-34 | 120 |
| Msa0755740 | AT3G49870.1 | 34.940 | 166 | 107 | 1 | 9 | 173 | 11 | 176 | 3.99e-32 | 114 |
| Msa0755740 | AT5G67560.1 | 34.337 | 166 | 108 | 1 | 9 | 173 | 11 | 176 | 1.01e-31 | 113 |
| Msa0755740 | AT3G49870.2 | 35.032 | 157 | 101 | 1 | 18 | 173 | 1 | 157 | 6.75e-30 | 108 |
| Msa0755740 | AT5G37680.1 | 33.133 | 166 | 110 | 1 | 9 | 173 | 11 | 176 | 7.43e-30 | 108 |
| Msa0755740 | AT3G49860.1 | 34.940 | 166 | 107 | 1 | 16 | 180 | 10 | 175 | 2.01e-29 | 107 |
| Msa0755740 | AT3G62560.1 | 32.768 | 177 | 103 | 2 | 15 | 177 | 18 | 192 | 1.32e-25 | 97.8 |
| Msa0755740 | AT4G02080.1 | 32.000 | 175 | 107 | 2 | 15 | 177 | 18 | 192 | 4.61e-25 | 96.3 |
| Msa0755740 | AT1G56330.1 | 32.584 | 178 | 104 | 2 | 15 | 178 | 18 | 193 | 5.65e-25 | 96.3 |
| Msa0755740 | AT1G02440.2 | 31.818 | 154 | 69 | 2 | 1 | 153 | 1 | 119 | 1.01e-24 | 93.6 |
| Msa0755740 | AT1G09180.1 | 32.584 | 178 | 104 | 2 | 14 | 177 | 17 | 192 | 1.17e-24 | 95.5 |
| Msa0755740 | AT5G37680.2 | 33.594 | 128 | 85 | 0 | 46 | 173 | 2 | 129 | 4.16e-24 | 92.4 |
Find 38 sgRNAs with CRISPR-Local
Find 134 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTTGGAAGGTCTTGCTTAT+TGG | 0.247726 | 5_2:+9578264 | None:intergenic |
| AAAATGTCAGCTTCACTGTC+TGG | 0.376569 | 5_2:-9578804 | Msa0755740:CDS |
| TCTGCAACGCTCAAAGCATT+TGG | 0.394687 | 5_2:+9578247 | None:intergenic |
| TGTATTGTTTGCTTATATAC+TGG | 0.402519 | 5_2:-9577895 | Msa0755740:three_prime_UTR |
| ATAGTGATTGATATTATAGT+TGG | 0.409476 | 5_2:+9577834 | None:intergenic |
| AGCTTCACTGTCTGGGATGT+TGG | 0.414580 | 5_2:-9578796 | Msa0755740:CDS |
| GACTCTATGAAGGCCTTGAT+TGG | 0.421761 | 5_2:-9578028 | Msa0755740:CDS |
| CAGTCAACTTGTGCCACGTC+TGG | 0.434429 | 5_2:-9578056 | Msa0755740:CDS |
| TTGTTATGATTTATGAAAGA+AGG | 0.446024 | 5_2:+9579185 | None:intergenic |
| TGTTATGATTTATGAAAGAA+GGG | 0.456184 | 5_2:+9579186 | None:intergenic |
| TACACAAGGTCTTATCTTTG+TGG | 0.464373 | 5_2:-9578492 | Msa0755740:CDS |
| CAGACGTGGCACAAGTTGAC+TGG | 0.490705 | 5_2:+9578057 | None:intergenic |
| CATTCTATGAAGTTCATCTC+TGG | 0.495248 | 5_2:+9578436 | None:intergenic |
| TTTGGAACCTATGGTTGGTA+TGG | 0.503874 | 5_2:+9578962 | None:intergenic |
| TTTATGCAAAGAAAGAAATG+AGG | 0.508896 | 5_2:-9579061 | Msa0755740:CDS |
| GCAGAAATTACTGATAAACT+TGG | 0.510496 | 5_2:-9578229 | Msa0755740:CDS |
| ATTCACTTCGCCAGCGTCGT+TGG | 0.511745 | 5_2:-9578201 | Msa0755740:intron |
| ATACTCTACAAACTGAAGCT+TGG | 0.516539 | 5_2:-9578999 | Msa0755740:CDS |
| AAATGTCAGCTTCACTGTCT+GGG | 0.518950 | 5_2:-9578803 | Msa0755740:CDS |
| ATGGTAGGTCTTGATGCTGC+TGG | 0.522575 | 5_2:-9579032 | Msa0755740:CDS |
| TTCACTGTCTGGGATGTTGG+AGG | 0.531178 | 5_2:-9578793 | Msa0755740:CDS |
| TGTTACTTGATAACCAATCA+AGG | 0.534396 | 5_2:+9578015 | None:intergenic |
| ATTGGCAAATACAAGTAAAG+TGG | 0.538360 | 5_2:+9578282 | None:intergenic |
| GACTATTTGGAACCTATGGT+TGG | 0.543143 | 5_2:+9578957 | None:intergenic |
| GAAAGAAATGAGGATTCTGA+TGG | 0.583316 | 5_2:-9579051 | Msa0755740:CDS |
| GAAATGAGGATTCTGATGGT+AGG | 0.584694 | 5_2:-9579047 | Msa0755740:CDS |
| ACTTGTGCCACGTCTGGACA+AGG | 0.593035 | 5_2:-9578050 | Msa0755740:CDS |
| TCGTGTAGATTCGACCATTG+TGG | 0.593428 | 5_2:-9578532 | Msa0755740:intron |
| TCTGGACAAGGACTCTATGA+AGG | 0.595755 | 5_2:-9578038 | Msa0755740:CDS |
| CAACGCTCAAAGCATTTGGA+AGG | 0.597973 | 5_2:+9578251 | None:intergenic |
| TGATTTATGAAAGAAGGGGA+AGG | 0.605479 | 5_2:+9579191 | None:intergenic |
| TGAAAATAGTGTCTCCACAA+TGG | 0.619967 | 5_2:+9578518 | None:intergenic |
| ATAGAGTCCTTGTCCAGACG+TGG | 0.637305 | 5_2:+9578043 | None:intergenic |
| GGATGTTGGAGGACAAGACA+AGG | 0.648549 | 5_2:-9578782 | Msa0755740:intron |
| AAATGGGGTTGACAGTGTCA+CGG | 0.652051 | 5_2:-9579097 | Msa0755740:CDS |
| GTCACTACCATACCAACCAT+AGG | 0.654409 | 5_2:-9578969 | Msa0755740:intron |
| GTTATGATTTATGAAAGAAG+GGG | 0.657634 | 5_2:+9579187 | None:intergenic |
| ACTTCATAGAATGCTTAGTG+AGG | 0.676324 | 5_2:-9578426 | Msa0755740:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATAGATATTATTTTTCAA+TGG | + | chr5_2:9578081-9578100 | None:intergenic | 10.0% |
| !!! | AAATAGATATTATTTTTCAA+TGG | + | chr5_2:9578081-9578100 | None:intergenic | 10.0% |
| !!! | ATTCAAGTTTTATACTTTTT+AGG | - | chr5_2:9577866-9577885 | Msa0755740:three_prime_UTR | 15.0% |
| !!! | TTCAAGTTTTATACTTTTTA+GGG | - | chr5_2:9577867-9577886 | Msa0755740:three_prime_UTR | 15.0% |
| !! | CTTGTTTAATAATAATAATG+AGG | - | chr5_2:9578317-9578336 | Msa0755740:intron | 15.0% |
| !!! | ATTCAAGTTTTATACTTTTT+AGG | - | chr5_2:9577866-9577885 | Msa0755740:three_prime_UTR | 15.0% |
| !!! | TTCAAGTTTTATACTTTTTA+GGG | - | chr5_2:9577867-9577886 | Msa0755740:three_prime_UTR | 15.0% |
| !! | CTTGTTTAATAATAATAATG+AGG | - | chr5_2:9578317-9578336 | Msa0755740:intron | 15.0% |
| !! | TGTTATGATTTATGAAAGAA+GGG | + | chr5_2:9577830-9577849 | None:intergenic | 20.0% |
| !! | TTGTTATGATTTATGAAAGA+AGG | + | chr5_2:9577831-9577850 | None:intergenic | 20.0% |
| !!! | CTAAATTTTGATTGAAACTA+AGG | - | chr5_2:9577890-9577909 | Msa0755740:three_prime_UTR | 20.0% |
| !! | ATTGAAACTAAGGTAAAAAT+GGG | - | chr5_2:9577900-9577919 | Msa0755740:three_prime_UTR | 20.0% |
| !!! | TTATTTTTCAATGGACTATT+TGG | + | chr5_2:9578072-9578091 | None:intergenic | 20.0% |
| !!! | TATTTCACTTTTATGTTGAA+AGG | + | chr5_2:9578659-9578678 | None:intergenic | 20.0% |
| !! | TTAATAAGCATTTACATTGT+AGG | - | chr5_2:9578693-9578712 | Msa0755740:intron | 20.0% |
| !! | TTACTTTGATCTTTATCATA+TGG | - | chr5_2:9579052-9579071 | Msa0755740:CDS | 20.0% |
| !! | ATAGTGATTGATATTATAGT+TGG | + | chr5_2:9579182-9579201 | None:intergenic | 20.0% |
| !! | TGTTATGATTTATGAAAGAA+GGG | + | chr5_2:9577830-9577849 | None:intergenic | 20.0% |
| !! | TTGTTATGATTTATGAAAGA+AGG | + | chr5_2:9577831-9577850 | None:intergenic | 20.0% |
| !!! | CTAAATTTTGATTGAAACTA+AGG | - | chr5_2:9577890-9577909 | Msa0755740:three_prime_UTR | 20.0% |
| !! | ATTGAAACTAAGGTAAAAAT+GGG | - | chr5_2:9577900-9577919 | Msa0755740:three_prime_UTR | 20.0% |
| !!! | TTATTTTTCAATGGACTATT+TGG | + | chr5_2:9578072-9578091 | None:intergenic | 20.0% |
| !!! | TATTTCACTTTTATGTTGAA+AGG | + | chr5_2:9578659-9578678 | None:intergenic | 20.0% |
| !! | TTAATAAGCATTTACATTGT+AGG | - | chr5_2:9578693-9578712 | Msa0755740:intron | 20.0% |
| !! | TTACTTTGATCTTTATCATA+TGG | - | chr5_2:9579052-9579071 | Msa0755740:CDS | 20.0% |
| !! | ATAGTGATTGATATTATAGT+TGG | + | chr5_2:9579182-9579201 | None:intergenic | 20.0% |
| ! | GTTATGATTTATGAAAGAAG+GGG | + | chr5_2:9577829-9577848 | None:intergenic | 25.0% |
| ! | GATTGAAACTAAGGTAAAAA+TGG | - | chr5_2:9577899-9577918 | Msa0755740:three_prime_UTR | 25.0% |
| ! | TTGAAACTAAGGTAAAAATG+GGG | - | chr5_2:9577901-9577920 | Msa0755740:three_prime_UTR | 25.0% |
| ! | TTTATGCAAAGAAAGAAATG+AGG | - | chr5_2:9577952-9577971 | Msa0755740:intron | 25.0% |
| ! | TTAAAATGATCATAGGGAAT+AGG | + | chr5_2:9578113-9578132 | None:intergenic | 25.0% |
| ! | TTTCGCTTAAAATGATCATA+GGG | + | chr5_2:9578119-9578138 | None:intergenic | 25.0% |
| !! | TTTTCGCTTAAAATGATCAT+AGG | + | chr5_2:9578120-9578139 | None:intergenic | 25.0% |
| ! | TTTAATGTCTCAAATGAATC+AGG | - | chr5_2:9578160-9578179 | Msa0755740:intron | 25.0% |
| !! | ACTTGTTAGAACATATAAGA+AGG | + | chr5_2:9578409-9578428 | None:intergenic | 25.0% |
| ! | ATAATTCAAAGTTGAGTTCA+GGG | - | chr5_2:9578909-9578928 | Msa0755740:intron | 25.0% |
| ! | TGTATTGTTTGCTTATATAC+TGG | - | chr5_2:9579118-9579137 | Msa0755740:five_prime_UTR | 25.0% |
| ! | GTTATGATTTATGAAAGAAG+GGG | + | chr5_2:9577829-9577848 | None:intergenic | 25.0% |
| ! | GATTGAAACTAAGGTAAAAA+TGG | - | chr5_2:9577899-9577918 | Msa0755740:three_prime_UTR | 25.0% |
| ! | TTGAAACTAAGGTAAAAATG+GGG | - | chr5_2:9577901-9577920 | Msa0755740:three_prime_UTR | 25.0% |
| ! | TTTATGCAAAGAAAGAAATG+AGG | - | chr5_2:9577952-9577971 | Msa0755740:intron | 25.0% |
| ! | TTAAAATGATCATAGGGAAT+AGG | + | chr5_2:9578113-9578132 | None:intergenic | 25.0% |
| ! | TTTCGCTTAAAATGATCATA+GGG | + | chr5_2:9578119-9578138 | None:intergenic | 25.0% |
| !! | TTTTCGCTTAAAATGATCAT+AGG | + | chr5_2:9578120-9578139 | None:intergenic | 25.0% |
| ! | TTTAATGTCTCAAATGAATC+AGG | - | chr5_2:9578160-9578179 | Msa0755740:intron | 25.0% |
| !! | ACTTGTTAGAACATATAAGA+AGG | + | chr5_2:9578409-9578428 | None:intergenic | 25.0% |
| ! | ATAATTCAAAGTTGAGTTCA+GGG | - | chr5_2:9578909-9578928 | Msa0755740:intron | 25.0% |
| ! | TGTATTGTTTGCTTATATAC+TGG | - | chr5_2:9579118-9579137 | Msa0755740:five_prime_UTR | 25.0% |
| ! | TCTAGTTTGCAATATGAACA+TGG | + | chr5_2:9578289-9578308 | None:intergenic | 30.0% |
| AGGTAATTCAGTTTGAACAT+CGG | - | chr5_2:9578337-9578356 | Msa0755740:intron | 30.0% | |
| CATAGTTCAATCAAGTGAAA+GGG | + | chr5_2:9578370-9578389 | None:intergenic | 30.0% | |
| TCATAGTTCAATCAAGTGAA+AGG | + | chr5_2:9578371-9578390 | None:intergenic | 30.0% | |
| GTTAGAACATATAAGAAGGT+TGG | + | chr5_2:9578405-9578424 | None:intergenic | 30.0% | |
| ! | CACTATTTTCAGAATACACA+AGG | - | chr5_2:9578507-9578526 | Msa0755740:CDS | 30.0% |
| ATTGGCAAATACAAGTAAAG+TGG | + | chr5_2:9578734-9578753 | None:intergenic | 30.0% | |
| GCAGAAATTACTGATAAACT+TGG | - | chr5_2:9578784-9578803 | Msa0755740:CDS | 30.0% | |
| CATAATTCAAAGTTGAGTTC+AGG | - | chr5_2:9578908-9578927 | Msa0755740:intron | 30.0% | |
| ! | TGTTACTTGATAACCAATCA+AGG | + | chr5_2:9579001-9579020 | None:intergenic | 30.0% |
| ! | TCTAGTTTGCAATATGAACA+TGG | + | chr5_2:9578289-9578308 | None:intergenic | 30.0% |
| AGGTAATTCAGTTTGAACAT+CGG | - | chr5_2:9578337-9578356 | Msa0755740:intron | 30.0% | |
| CATAGTTCAATCAAGTGAAA+GGG | + | chr5_2:9578370-9578389 | None:intergenic | 30.0% | |
| TCATAGTTCAATCAAGTGAA+AGG | + | chr5_2:9578371-9578390 | None:intergenic | 30.0% | |
| GTTAGAACATATAAGAAGGT+TGG | + | chr5_2:9578405-9578424 | None:intergenic | 30.0% | |
| ! | CACTATTTTCAGAATACACA+AGG | - | chr5_2:9578507-9578526 | Msa0755740:CDS | 30.0% |
| ATTGGCAAATACAAGTAAAG+TGG | + | chr5_2:9578734-9578753 | None:intergenic | 30.0% | |
| GCAGAAATTACTGATAAACT+TGG | - | chr5_2:9578784-9578803 | Msa0755740:CDS | 30.0% | |
| CATAATTCAAAGTTGAGTTC+AGG | - | chr5_2:9578908-9578927 | Msa0755740:intron | 30.0% | |
| ! | TGTTACTTGATAACCAATCA+AGG | + | chr5_2:9579001-9579020 | None:intergenic | 30.0% |
| TGATTTATGAAAGAAGGGGA+AGG | + | chr5_2:9577825-9577844 | None:intergenic | 35.0% | |
| GAAAGAAATGAGGATTCTGA+TGG | - | chr5_2:9577962-9577981 | Msa0755740:intron | 35.0% | |
| ATACTCTACAAACTGAAGCT+TGG | - | chr5_2:9578014-9578033 | Msa0755740:CDS | 35.0% | |
| !! | AATGGACTATTTGGAACCTA+TGG | + | chr5_2:9578063-9578082 | None:intergenic | 35.0% |
| TGAAAATAGTGTCTCCACAA+TGG | + | chr5_2:9578498-9578517 | None:intergenic | 35.0% | |
| ! | TACACAAGGTCTTATCTTTG+TGG | - | chr5_2:9578521-9578540 | Msa0755740:CDS | 35.0% |
| CATTCTATGAAGTTCATCTC+TGG | + | chr5_2:9578580-9578599 | None:intergenic | 35.0% | |
| ACTTCATAGAATGCTTAGTG+AGG | - | chr5_2:9578587-9578606 | Msa0755740:intron | 35.0% | |
| ATTTGGAAGGTCTTGCTTAT+TGG | + | chr5_2:9578752-9578771 | None:intergenic | 35.0% | |
| TGATTTATGAAAGAAGGGGA+AGG | + | chr5_2:9577825-9577844 | None:intergenic | 35.0% | |
| GAAAGAAATGAGGATTCTGA+TGG | - | chr5_2:9577962-9577981 | Msa0755740:intron | 35.0% | |
| ATACTCTACAAACTGAAGCT+TGG | - | chr5_2:9578014-9578033 | Msa0755740:CDS | 35.0% | |
| !! | AATGGACTATTTGGAACCTA+TGG | + | chr5_2:9578063-9578082 | None:intergenic | 35.0% |
| TGAAAATAGTGTCTCCACAA+TGG | + | chr5_2:9578498-9578517 | None:intergenic | 35.0% | |
| ! | TACACAAGGTCTTATCTTTG+TGG | - | chr5_2:9578521-9578540 | Msa0755740:CDS | 35.0% |
| CATTCTATGAAGTTCATCTC+TGG | + | chr5_2:9578580-9578599 | None:intergenic | 35.0% | |
| ACTTCATAGAATGCTTAGTG+AGG | - | chr5_2:9578587-9578606 | Msa0755740:intron | 35.0% | |
| ATTTGGAAGGTCTTGCTTAT+TGG | + | chr5_2:9578752-9578771 | None:intergenic | 35.0% | |
| GAAATGAGGATTCTGATGGT+AGG | - | chr5_2:9577966-9577985 | Msa0755740:intron | 40.0% | |
| ! | TTTGGAACCTATGGTTGGTA+TGG | + | chr5_2:9578054-9578073 | None:intergenic | 40.0% |
| ! | GACTATTTGGAACCTATGGT+TGG | + | chr5_2:9578059-9578078 | None:intergenic | 40.0% |
| AAAATGTCAGCTTCACTGTC+TGG | - | chr5_2:9578209-9578228 | Msa0755740:CDS | 40.0% | |
| AAATGTCAGCTTCACTGTCT+GGG | - | chr5_2:9578210-9578229 | Msa0755740:CDS | 40.0% | |
| GAAATGAGGATTCTGATGGT+AGG | - | chr5_2:9577966-9577985 | Msa0755740:intron | 40.0% | |
| ! | TTTGGAACCTATGGTTGGTA+TGG | + | chr5_2:9578054-9578073 | None:intergenic | 40.0% |
| ! | GACTATTTGGAACCTATGGT+TGG | + | chr5_2:9578059-9578078 | None:intergenic | 40.0% |
| AAAATGTCAGCTTCACTGTC+TGG | - | chr5_2:9578209-9578228 | Msa0755740:CDS | 40.0% | |
| AAATGTCAGCTTCACTGTCT+GGG | - | chr5_2:9578210-9578229 | Msa0755740:CDS | 40.0% | |
| AAATGGGGTTGACAGTGTCA+CGG | - | chr5_2:9577916-9577935 | Msa0755740:three_prime_UTR | 45.0% | |
| GTCACTACCATACCAACCAT+AGG | - | chr5_2:9578044-9578063 | Msa0755740:CDS | 45.0% | |
| TCGTGTAGATTCGACCATTG+TGG | - | chr5_2:9578481-9578500 | Msa0755740:CDS | 45.0% | |
| ! | CAACGCTCAAAGCATTTGGA+AGG | + | chr5_2:9578765-9578784 | None:intergenic | 45.0% |
| ! | TCTGCAACGCTCAAAGCATT+TGG | + | chr5_2:9578769-9578788 | None:intergenic | 45.0% |
| !! | AGGGTGTTTTTGATCCGTTC+AGG | - | chr5_2:9578928-9578947 | Msa0755740:intron | 45.0% |
| GTTGACTGGATGTACCTGAA+CGG | + | chr5_2:9578945-9578964 | None:intergenic | 45.0% | |
| TCTGGACAAGGACTCTATGA+AGG | - | chr5_2:9578975-9578994 | Msa0755740:CDS | 45.0% | |
| GACTCTATGAAGGCCTTGAT+TGG | - | chr5_2:9578985-9579004 | Msa0755740:CDS | 45.0% | |
| AAATGGGGTTGACAGTGTCA+CGG | - | chr5_2:9577916-9577935 | Msa0755740:three_prime_UTR | 45.0% | |
| GTCACTACCATACCAACCAT+AGG | - | chr5_2:9578044-9578063 | Msa0755740:CDS | 45.0% | |
| TCGTGTAGATTCGACCATTG+TGG | - | chr5_2:9578481-9578500 | Msa0755740:CDS | 45.0% | |
| ! | CAACGCTCAAAGCATTTGGA+AGG | + | chr5_2:9578765-9578784 | None:intergenic | 45.0% |
| ! | TCTGCAACGCTCAAAGCATT+TGG | + | chr5_2:9578769-9578788 | None:intergenic | 45.0% |
| !! | AGGGTGTTTTTGATCCGTTC+AGG | - | chr5_2:9578928-9578947 | Msa0755740:intron | 45.0% |
| GTTGACTGGATGTACCTGAA+CGG | + | chr5_2:9578945-9578964 | None:intergenic | 45.0% | |
| TCTGGACAAGGACTCTATGA+AGG | - | chr5_2:9578975-9578994 | Msa0755740:CDS | 45.0% | |
| GACTCTATGAAGGCCTTGAT+TGG | - | chr5_2:9578985-9579004 | Msa0755740:CDS | 45.0% | |
| ATGGTAGGTCTTGATGCTGC+TGG | - | chr5_2:9577981-9578000 | Msa0755740:exon | 50.0% | |
| ! | AGCTTCACTGTCTGGGATGT+TGG | - | chr5_2:9578217-9578236 | Msa0755740:CDS | 50.0% |
| ! | TTCACTGTCTGGGATGTTGG+AGG | - | chr5_2:9578220-9578239 | Msa0755740:CDS | 50.0% |
| GGATGTTGGAGGACAAGACA+AGG | - | chr5_2:9578231-9578250 | Msa0755740:CDS | 50.0% | |
| ATAGAGTCCTTGTCCAGACG+TGG | + | chr5_2:9578973-9578992 | None:intergenic | 50.0% | |
| ATGGTAGGTCTTGATGCTGC+TGG | - | chr5_2:9577981-9578000 | Msa0755740:exon | 50.0% | |
| ! | AGCTTCACTGTCTGGGATGT+TGG | - | chr5_2:9578217-9578236 | Msa0755740:CDS | 50.0% |
| ! | TTCACTGTCTGGGATGTTGG+AGG | - | chr5_2:9578220-9578239 | Msa0755740:CDS | 50.0% |
| GGATGTTGGAGGACAAGACA+AGG | - | chr5_2:9578231-9578250 | Msa0755740:CDS | 50.0% | |
| ATAGAGTCCTTGTCCAGACG+TGG | + | chr5_2:9578973-9578992 | None:intergenic | 50.0% | |
| ATTCACTTCGCCAGCGTCGT+TGG | - | chr5_2:9578812-9578831 | Msa0755740:CDS | 55.0% | |
| ACGTGACTTACCAACGACGC+TGG | + | chr5_2:9578825-9578844 | None:intergenic | 55.0% | |
| ! | CAGACGTGGCACAAGTTGAC+TGG | + | chr5_2:9578959-9578978 | None:intergenic | 55.0% |
| CAGTCAACTTGTGCCACGTC+TGG | - | chr5_2:9578957-9578976 | Msa0755740:intron | 55.0% | |
| ACTTGTGCCACGTCTGGACA+AGG | - | chr5_2:9578963-9578982 | Msa0755740:intron | 55.0% | |
| ATTCACTTCGCCAGCGTCGT+TGG | - | chr5_2:9578812-9578831 | Msa0755740:CDS | 55.0% | |
| ACGTGACTTACCAACGACGC+TGG | + | chr5_2:9578825-9578844 | None:intergenic | 55.0% | |
| ! | CAGACGTGGCACAAGTTGAC+TGG | + | chr5_2:9578959-9578978 | None:intergenic | 55.0% |
| CAGTCAACTTGTGCCACGTC+TGG | - | chr5_2:9578957-9578976 | Msa0755740:intron | 55.0% | |
| ACTTGTGCCACGTCTGGACA+AGG | - | chr5_2:9578963-9578982 | Msa0755740:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 9577822 | 9579213 | 9577822 | ID=Msa0755740;Name=Msa0755740 |
| chr5_2 | mRNA | 9577822 | 9579213 | 9577822 | ID=Msa0755740-mRNA-1;Parent=Msa0755740;Name=Msa0755740-mRNA-1;_AED=0.17;_eAED=0.17;_QI=96|1|1|1|0.8|0.66|6|152|182 |
| chr5_2 | exon | 9577822 | 9577954 | 9577822 | ID=Msa0755740-mRNA-1:exon:4489;Parent=Msa0755740-mRNA-1 |
| chr5_2 | exon | 9577976 | 9578085 | 9577976 | ID=Msa0755740-mRNA-1:exon:4488;Parent=Msa0755740-mRNA-1 |
| chr5_2 | exon | 9578202 | 9578320 | 9578202 | ID=Msa0755740-mRNA-1:exon:4487;Parent=Msa0755740-mRNA-1 |
| chr5_2 | exon | 9578427 | 9578546 | 9578427 | ID=Msa0755740-mRNA-1:exon:4486;Parent=Msa0755740-mRNA-1 |
| chr5_2 | exon | 9578783 | 9578853 | 9578783 | ID=Msa0755740-mRNA-1:exon:4485;Parent=Msa0755740-mRNA-1 |
| chr5_2 | exon | 9578970 | 9579213 | 9578970 | ID=Msa0755740-mRNA-1:exon:4484;Parent=Msa0755740-mRNA-1 |
| chr5_2 | five_prime_UTR | 9579118 | 9579213 | 9579118 | ID=Msa0755740-mRNA-1:five_prime_utr;Parent=Msa0755740-mRNA-1 |
| chr5_2 | CDS | 9578970 | 9579117 | 9578970 | ID=Msa0755740-mRNA-1:cds;Parent=Msa0755740-mRNA-1 |
| chr5_2 | CDS | 9578783 | 9578853 | 9578783 | ID=Msa0755740-mRNA-1:cds;Parent=Msa0755740-mRNA-1 |
| chr5_2 | CDS | 9578427 | 9578546 | 9578427 | ID=Msa0755740-mRNA-1:cds;Parent=Msa0755740-mRNA-1 |
| chr5_2 | CDS | 9578202 | 9578320 | 9578202 | ID=Msa0755740-mRNA-1:cds;Parent=Msa0755740-mRNA-1 |
| chr5_2 | CDS | 9577995 | 9578085 | 9577995 | ID=Msa0755740-mRNA-1:cds;Parent=Msa0755740-mRNA-1 |
| chr5_2 | three_prime_UTR | 9577976 | 9577994 | 9577976 | ID=Msa0755740-mRNA-1:three_prime_utr;Parent=Msa0755740-mRNA-1 |
| chr5_2 | three_prime_UTR | 9577822 | 9577954 | 9577822 | ID=Msa0755740-mRNA-1:three_prime_utr;Parent=Msa0755740-mRNA-1 |
| Gene Sequence |
| Protein sequence |
