AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0756850

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0756850 MtrunA17_Chr3g0108121 77.143 175 32 2 1 174 30 197 1.12e-84 249
Msa0756850 MtrunA17_Chr3g0096691 69.061 181 49 1 1 174 1 181 3.06e-80 237
Msa0756850 MtrunA17_Chr3g0097581 69.613 181 48 1 1 174 1 181 6.57e-80 236
Msa0756850 MtrunA17_Chr3g0096701 75.862 174 35 1 1 174 545 711 2.99e-79 249
Msa0756850 MtrunA17_Chr3g0107091 71.264 174 43 1 1 174 1 167 2.93e-72 216
Msa0756850 MtrunA17_Chr3g0106031 67.429 175 48 3 1 174 97 263 1.20e-62 194
Msa0756850 MtrunA17_Chr3g0094321 68.874 151 47 0 1 151 14 164 6.02e-61 186
Msa0756850 MtrunA17_Chr3g0107201 65.922 179 54 1 1 172 416 594 8.41e-59 193
Msa0756850 MtrunA17_Chr7g0229741 69.286 140 41 2 1 139 1 139 9.92e-56 173
Msa0756850 MtrunA17_Chr5g0402021 91.667 60 5 0 115 174 1 60 9.33e-32 109
Msa0756850 MtrunA17_Chr3g0096781 64.706 85 23 1 93 170 3 87 9.19e-25 93.6
Msa0756850 MtrunA17_Chr3g0108031 68.657 67 14 1 115 174 1 67 1.86e-20 81.6
Msa0756850 MtrunA17_Chr3g0108011 80.769 52 10 0 6 57 1721 1772 3.09e-19 84.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 45 sgRNAs with CRISPR-Local

Find 164 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTCTCCAATTTCAACATATT+TGG 0.169388 5_2:-11437960 None:intergenic
TTGAAGATTCACTATCAATT+TGG 0.182688 5_2:-11438698 None:intergenic
TAATATAAGAATTATAATTT+TGG 0.206931 5_2:-11438254 None:intergenic
GCCACCAAATATGTTGAAAT+TGG 0.255477 5_2:+11437956 Msa0756850:five_prime_UTR
TCAAGAATTGAAGACTTTGA+TGG 0.290325 5_2:+11438218 Msa0756850:five_prime_UTR
TCAAGAATTGAAGACTTTGA+TGG 0.290325 5_2:+11438416 Msa0756850:CDS
GCATTTGAGACGCTTCTTAC+TGG 0.308967 5_2:+11438165 Msa0756850:five_prime_UTR
GCATTTGAGACGCTTCTTAC+TGG 0.308967 5_2:+11438363 Msa0756850:CDS
TGAAGATTCACTATCAATTT+GGG 0.337810 5_2:-11438697 None:intergenic
TTCTTGAAGTAAAGTTCTAA+TGG 0.364202 5_2:-11438202 None:intergenic
TTCTTGAAGTAAAGTTCTAA+TGG 0.364202 5_2:-11438400 None:intergenic
AGGAGAAATCAACTTCAGTT+TGG 0.378464 5_2:-11438481 None:intergenic
AAAACTCACCAATAGTTTCC+TGG 0.392558 5_2:-11437985 None:intergenic
CAATGTCAACATAGTCAAAC+AGG 0.443613 5_2:+11438581 Msa0756850:CDS
CTGATCTTATGAACAAGCTT+AGG 0.447346 5_2:+11438655 Msa0756850:CDS
AATTTGAATTGCTAGGAAGT+TGG 0.460468 5_2:+11437881 Msa0756850:intron
ATTTCAACATATTTGGTGGC+AGG 0.477391 5_2:-11437953 None:intergenic
TAAATGATTGTTTGTAGCAA+TGG 0.479509 5_2:+11438302 Msa0756850:exon
GGAGACTCCCAGGAAACTAT+TGG 0.483016 5_2:+11437977 Msa0756850:five_prime_UTR
TCCAATTTCAACATATTTGG+TGG 0.490994 5_2:-11437957 None:intergenic
TGTTCAGAAGGAGAAGTTGA+TGG 0.521325 5_2:+11438812 Msa0756850:CDS
AAACTCACCAATAGTTTCCT+GGG 0.528149 5_2:-11437984 None:intergenic
TGTTGATTCAGTCCATGAAA+AGG 0.532895 5_2:-11438501 None:intergenic
AGACATTAACAAACAAATTG+AGG 0.534571 5_2:+11438128 Msa0756850:five_prime_UTR
TATATTGACATTTGAAGAAG+AGG 0.537375 5_2:-11437924 None:intergenic
ACACTTCTCAACAAGTACTT+AGG 0.539088 5_2:+11438604 Msa0756850:CDS
TGTTGAAATTGGAGACTCCC+AGG 0.540952 5_2:+11437967 Msa0756850:five_prime_UTR
TCAACTTCAGTTTGGACTCG+TGG 0.541203 5_2:-11438473 None:intergenic
ACAAATTCCTTCACATCAGA+AGG 0.542860 5_2:-11438537 None:intergenic
AGGCATTAACAAACAGATTG+AGG 0.543915 5_2:+11438326 Msa0756850:CDS
TTGATGGCTAATGCACTGAA+TGG 0.547833 5_2:+11438828 Msa0756850:CDS
AAACAAATGTGATGTTCAGA+AGG 0.549663 5_2:+11438800 Msa0756850:CDS
CATACAAGTTACAAGCAACT+TGG 0.557604 5_2:-11437192 None:intergenic
GCGTCTCAAATGCAAGAAGC+GGG 0.563643 5_2:-11438155 None:intergenic
ACTCTTACCTTCTGATGTGA+AGG 0.572398 5_2:+11438530 Msa0756850:CDS
TGATGGCTAATGCACTGAAT+GGG 0.574148 5_2:+11438829 Msa0756850:CDS
AGCGTCTCAAATGCAAGAAG+CGG 0.579572 5_2:-11438354 None:intergenic
TGATTGTTTGTAGCAATGGA+AGG 0.581352 5_2:+11438306 Msa0756850:exon
AGCGTCTCAAATGCAAGAAG+CGG 0.590962 5_2:-11438156 None:intergenic
ATATTGACATTTGAAGAAGA+GGG 0.603801 5_2:-11437923 None:intergenic
AACTTGGTGTTGACGCTCTG+AGG 0.605073 5_2:-11437176 None:intergenic
ACTCGTGGTTAGATACAAGA+TGG 0.648760 5_2:-11438458 None:intergenic
CATTAACAAACAAATTGAGG+AGG 0.682556 5_2:+11438131 Msa0756850:five_prime_UTR
GGTTAGATACAAGATGGTCA+CGG 0.691664 5_2:-11438452 None:intergenic
CATGGACTGAATCAACATCG+AGG 0.754681 5_2:+11438507 Msa0756850:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTAATTTTGGATAAAAAA+AGG + chr5_2:11437521-11437540 Msa0756850:intron 10.0%
!!! TTTTAATTTTGGATAAAAAA+AGG + chr5_2:11437521-11437540 Msa0756850:intron 10.0%
!!! TTTATTCAATTCAAATTTTG+TGG + chr5_2:11437280-11437299 Msa0756850:intron 15.0%
!!! TTATTCAATTCAAATTTTGT+GGG + chr5_2:11437281-11437300 Msa0756850:intron 15.0%
!!! AATAATAATGATGATGATAA+AGG + chr5_2:11437476-11437495 Msa0756850:intron 15.0%
!!! ATAATAATGATGATGATAAA+GGG + chr5_2:11437477-11437496 Msa0756850:intron 15.0%
!! TATAGATGATTGTTAAAATT+CGG + chr5_2:11437661-11437680 Msa0756850:intron 15.0%
!! ATCAAATTAATTAACAATTC+AGG - chr5_2:11437847-11437866 None:intergenic 15.0%
!!! TTTTTCTTCTCTAAATTTTA+AGG + chr5_2:11438009-11438028 Msa0756850:intron 15.0%
!! GATTATAAATGATTTATTGT+AGG + chr5_2:11438099-11438118 Msa0756850:intron 15.0%
!!! TTTATTCAATTCAAATTTTG+TGG + chr5_2:11437280-11437299 Msa0756850:intron 15.0%
!!! TTATTCAATTCAAATTTTGT+GGG + chr5_2:11437281-11437300 Msa0756850:intron 15.0%
!!! AATAATAATGATGATGATAA+AGG + chr5_2:11437476-11437495 Msa0756850:intron 15.0%
!!! ATAATAATGATGATGATAAA+GGG + chr5_2:11437477-11437496 Msa0756850:intron 15.0%
!! TATAGATGATTGTTAAAATT+CGG + chr5_2:11437661-11437680 Msa0756850:intron 15.0%
!! ATCAAATTAATTAACAATTC+AGG - chr5_2:11437847-11437866 None:intergenic 15.0%
!!! TTTTTCTTCTCTAAATTTTA+AGG + chr5_2:11438009-11438028 Msa0756850:intron 15.0%
!! GATTATAAATGATTTATTGT+AGG + chr5_2:11438099-11438118 Msa0756850:intron 15.0%
!! AAAATTAGGGTTTAAGAATT+GGG - chr5_2:11437257-11437276 None:intergenic 20.0%
!! TAAAATTAGGGTTTAAGAAT+TGG - chr5_2:11437258-11437277 None:intergenic 20.0%
!!! CTTTGACACTTTTTTAATTT+TGG + chr5_2:11437510-11437529 Msa0756850:intron 20.0%
!! AAAGGAAAAAGAAAAAAGAA+AGG + chr5_2:11437539-11437558 Msa0756850:intron 20.0%
!!! AAGATTTTAATTGTGACAAT+GGG + chr5_2:11437562-11437581 Msa0756850:intron 20.0%
!!! GTTAATTAATTTGAATTGCT+AGG + chr5_2:11437874-11437893 Msa0756850:intron 20.0%
!! TAAATGATTTATTGTAGGAA+TGG + chr5_2:11438104-11438123 Msa0756850:intron 20.0%
!! AAAATTAGGGTTTAAGAATT+GGG - chr5_2:11437257-11437276 None:intergenic 20.0%
!! TAAAATTAGGGTTTAAGAAT+TGG - chr5_2:11437258-11437277 None:intergenic 20.0%
!!! CTTTGACACTTTTTTAATTT+TGG + chr5_2:11437510-11437529 Msa0756850:intron 20.0%
!! AAAGGAAAAAGAAAAAAGAA+AGG + chr5_2:11437539-11437558 Msa0756850:intron 20.0%
!!! AAGATTTTAATTGTGACAAT+GGG + chr5_2:11437562-11437581 Msa0756850:intron 20.0%
!!! GTTAATTAATTTGAATTGCT+AGG + chr5_2:11437874-11437893 Msa0756850:intron 20.0%
!! TAAATGATTTATTGTAGGAA+TGG + chr5_2:11438104-11438123 Msa0756850:intron 20.0%
! AAAATTAGAGATAGAGAAAG+AGG - chr5_2:11437226-11437245 None:intergenic 25.0%
!!! AAAAAAGTGTCAAAGATTCT+TGG - chr5_2:11437505-11437524 None:intergenic 25.0%
!!! GAAGATTTTAATTGTGACAA+TGG + chr5_2:11437561-11437580 Msa0756850:intron 25.0%
!! ACTTTTAGTACAAAATACTG+CGG + chr5_2:11437605-11437624 Msa0756850:intron 25.0%
!! ATGTTACGATATAACTTTTC+TGG + chr5_2:11437747-11437766 Msa0756850:intron 25.0%
! ATATTGACATTTGAAGAAGA+GGG - chr5_2:11437926-11437945 None:intergenic 25.0%
! TATATTGACATTTGAAGAAG+AGG - chr5_2:11437927-11437946 None:intergenic 25.0%
! TAATCTTCTTATTACTCTCA+TGG - chr5_2:11438084-11438103 None:intergenic 25.0%
! AGACATTAACAAACAAATTG+AGG + chr5_2:11438128-11438147 Msa0756850:five_prime_UTR 25.0%
!! TTCTTGAAGTAAAGTTCTAA+TGG - chr5_2:11438205-11438224 None:intergenic 25.0%
! TAAATGATTGTTTGTAGCAA+TGG + chr5_2:11438302-11438321 Msa0756850:exon 25.0%
!! TTCTTGAAGTAAAGTTCTAA+TGG - chr5_2:11438205-11438224 None:intergenic 25.0%
! TGAAGATTCACTATCAATTT+GGG - chr5_2:11438700-11438719 None:intergenic 25.0%
! TTGAAGATTCACTATCAATT+TGG - chr5_2:11438701-11438720 None:intergenic 25.0%
! AAAATTAGAGATAGAGAAAG+AGG - chr5_2:11437226-11437245 None:intergenic 25.0%
!!! AAAAAAGTGTCAAAGATTCT+TGG - chr5_2:11437505-11437524 None:intergenic 25.0%
!!! GAAGATTTTAATTGTGACAA+TGG + chr5_2:11437561-11437580 Msa0756850:intron 25.0%
!! ACTTTTAGTACAAAATACTG+CGG + chr5_2:11437605-11437624 Msa0756850:intron 25.0%
!! ATGTTACGATATAACTTTTC+TGG + chr5_2:11437747-11437766 Msa0756850:intron 25.0%
! ATATTGACATTTGAAGAAGA+GGG - chr5_2:11437926-11437945 None:intergenic 25.0%
! TATATTGACATTTGAAGAAG+AGG - chr5_2:11437927-11437946 None:intergenic 25.0%
! TAATCTTCTTATTACTCTCA+TGG - chr5_2:11438084-11438103 None:intergenic 25.0%
! AGACATTAACAAACAAATTG+AGG + chr5_2:11438128-11438147 Msa0756850:five_prime_UTR 25.0%
!! TTCTTGAAGTAAAGTTCTAA+TGG - chr5_2:11438205-11438224 None:intergenic 25.0%
! TAAATGATTGTTTGTAGCAA+TGG + chr5_2:11438302-11438321 Msa0756850:exon 25.0%
!! TTCTTGAAGTAAAGTTCTAA+TGG - chr5_2:11438205-11438224 None:intergenic 25.0%
! TGAAGATTCACTATCAATTT+GGG - chr5_2:11438700-11438719 None:intergenic 25.0%
! TTGAAGATTCACTATCAATT+TGG - chr5_2:11438701-11438720 None:intergenic 25.0%
TAGCTGTTATTCAACAACAT+TGG + chr5_2:11437711-11437730 Msa0756850:intron 30.0%
TGGTCAAGTGAAATTCAAAT+AGG + chr5_2:11437767-11437786 Msa0756850:intron 30.0%
GGTCAAGTGAAATTCAAATA+GGG + chr5_2:11437768-11437787 Msa0756850:intron 30.0%
GTCAAGTGAAATTCAAATAG+GGG + chr5_2:11437769-11437788 Msa0756850:intron 30.0%
AATTTGAATTGCTAGGAAGT+TGG + chr5_2:11437881-11437900 Msa0756850:intron 30.0%
TCCAATTTCAACATATTTGG+TGG - chr5_2:11437960-11437979 None:intergenic 30.0%
GTCTCCAATTTCAACATATT+TGG - chr5_2:11437963-11437982 None:intergenic 30.0%
GAAACTAAATGCAAAGTGAT+AGG - chr5_2:11438040-11438059 None:intergenic 30.0%
CATTAACAAACAAATTGAGG+AGG + chr5_2:11438131-11438150 Msa0756850:five_prime_UTR 30.0%
TCAAGAATTGAAGACTTTGA+TGG + chr5_2:11438218-11438237 Msa0756850:five_prime_UTR 30.0%
TCAAGAATTGAAGACTTTGA+TGG + chr5_2:11438218-11438237 Msa0756850:five_prime_UTR 30.0%
!! AAGTTGATTTCTCCTTTTCA+TGG + chr5_2:11438489-11438508 Msa0756850:CDS 30.0%
AAACAAATGTGATGTTCAGA+AGG + chr5_2:11438800-11438819 Msa0756850:CDS 30.0%
TAGCTGTTATTCAACAACAT+TGG + chr5_2:11437711-11437730 Msa0756850:intron 30.0%
TGGTCAAGTGAAATTCAAAT+AGG + chr5_2:11437767-11437786 Msa0756850:intron 30.0%
GGTCAAGTGAAATTCAAATA+GGG + chr5_2:11437768-11437787 Msa0756850:intron 30.0%
GTCAAGTGAAATTCAAATAG+GGG + chr5_2:11437769-11437788 Msa0756850:intron 30.0%
AATTTGAATTGCTAGGAAGT+TGG + chr5_2:11437881-11437900 Msa0756850:intron 30.0%
TCCAATTTCAACATATTTGG+TGG - chr5_2:11437960-11437979 None:intergenic 30.0%
GTCTCCAATTTCAACATATT+TGG - chr5_2:11437963-11437982 None:intergenic 30.0%
GAAACTAAATGCAAAGTGAT+AGG - chr5_2:11438040-11438059 None:intergenic 30.0%
CATTAACAAACAAATTGAGG+AGG + chr5_2:11438131-11438150 Msa0756850:five_prime_UTR 30.0%
TCAAGAATTGAAGACTTTGA+TGG + chr5_2:11438218-11438237 Msa0756850:five_prime_UTR 30.0%
TCAAGAATTGAAGACTTTGA+TGG + chr5_2:11438218-11438237 Msa0756850:five_prime_UTR 30.0%
!! AAGTTGATTTCTCCTTTTCA+TGG + chr5_2:11438489-11438508 Msa0756850:CDS 30.0%
AAACAAATGTGATGTTCAGA+AGG + chr5_2:11438800-11438819 Msa0756850:CDS 30.0%
CATACAAGTTACAAGCAACT+TGG - chr5_2:11437195-11437214 None:intergenic 35.0%
ATAGCAACGTTACAAAACTG+TGG - chr5_2:11437337-11437356 None:intergenic 35.0%
!! ACAGTTTTGTAACGTTGCTA+TGG + chr5_2:11437336-11437355 Msa0756850:intron 35.0%
! ATTTCAACATATTTGGTGGC+AGG - chr5_2:11437956-11437975 None:intergenic 35.0%
GCCACCAAATATGTTGAAAT+TGG + chr5_2:11437956-11437975 Msa0756850:five_prime_UTR 35.0%
AAACTCACCAATAGTTTCCT+GGG - chr5_2:11437987-11438006 None:intergenic 35.0%
AAAACTCACCAATAGTTTCC+TGG - chr5_2:11437988-11438007 None:intergenic 35.0%
TGATTGTTTGTAGCAATGGA+AGG + chr5_2:11438306-11438325 Msa0756850:exon 35.0%
AGGCATTAACAAACAGATTG+AGG + chr5_2:11438326-11438345 Msa0756850:CDS 35.0%
AGGAGAAATCAACTTCAGTT+TGG - chr5_2:11438484-11438503 None:intergenic 35.0%
!! TGTTGATTCAGTCCATGAAA+AGG - chr5_2:11438504-11438523 None:intergenic 35.0%
ACAAATTCCTTCACATCAGA+AGG - chr5_2:11438540-11438559 None:intergenic 35.0%
CAATGTCAACATAGTCAAAC+AGG + chr5_2:11438581-11438600 Msa0756850:CDS 35.0%
ACACTTCTCAACAAGTACTT+AGG + chr5_2:11438604-11438623 Msa0756850:CDS 35.0%
! CAGTTTTCGAATCAAGAAGT+TGG - chr5_2:11438638-11438657 None:intergenic 35.0%
CTGATCTTATGAACAAGCTT+AGG + chr5_2:11438655-11438674 Msa0756850:CDS 35.0%
CATACAAGTTACAAGCAACT+TGG - chr5_2:11437195-11437214 None:intergenic 35.0%
ATAGCAACGTTACAAAACTG+TGG - chr5_2:11437337-11437356 None:intergenic 35.0%
!! ACAGTTTTGTAACGTTGCTA+TGG + chr5_2:11437336-11437355 Msa0756850:intron 35.0%
! ATTTCAACATATTTGGTGGC+AGG - chr5_2:11437956-11437975 None:intergenic 35.0%
GCCACCAAATATGTTGAAAT+TGG + chr5_2:11437956-11437975 Msa0756850:five_prime_UTR 35.0%
AAACTCACCAATAGTTTCCT+GGG - chr5_2:11437987-11438006 None:intergenic 35.0%
AAAACTCACCAATAGTTTCC+TGG - chr5_2:11437988-11438007 None:intergenic 35.0%
TGATTGTTTGTAGCAATGGA+AGG + chr5_2:11438306-11438325 Msa0756850:exon 35.0%
AGGCATTAACAAACAGATTG+AGG + chr5_2:11438326-11438345 Msa0756850:CDS 35.0%
AGGAGAAATCAACTTCAGTT+TGG - chr5_2:11438484-11438503 None:intergenic 35.0%
!! TGTTGATTCAGTCCATGAAA+AGG - chr5_2:11438504-11438523 None:intergenic 35.0%
ACAAATTCCTTCACATCAGA+AGG - chr5_2:11438540-11438559 None:intergenic 35.0%
CAATGTCAACATAGTCAAAC+AGG + chr5_2:11438581-11438600 Msa0756850:CDS 35.0%
ACACTTCTCAACAAGTACTT+AGG + chr5_2:11438604-11438623 Msa0756850:CDS 35.0%
! CAGTTTTCGAATCAAGAAGT+TGG - chr5_2:11438638-11438657 None:intergenic 35.0%
CTGATCTTATGAACAAGCTT+AGG + chr5_2:11438655-11438674 Msa0756850:CDS 35.0%
GCTATAACATTGTTGCGTAG+CGG + chr5_2:11437629-11437648 Msa0756850:intron 40.0%
AAAATTCGGCCACGATTTAG+TGG + chr5_2:11437675-11437694 Msa0756850:intron 40.0%
GGTTAGATACAAGATGGTCA+CGG - chr5_2:11438455-11438474 None:intergenic 40.0%
ACTCGTGGTTAGATACAAGA+TGG - chr5_2:11438461-11438480 None:intergenic 40.0%
ACTCTTACCTTCTGATGTGA+AGG + chr5_2:11438530-11438549 Msa0756850:CDS 40.0%
TGTTCAGAAGGAGAAGTTGA+TGG + chr5_2:11438812-11438831 Msa0756850:CDS 40.0%
! TTGATGGCTAATGCACTGAA+TGG + chr5_2:11438828-11438847 Msa0756850:CDS 40.0%
TGATGGCTAATGCACTGAAT+GGG + chr5_2:11438829-11438848 Msa0756850:CDS 40.0%
GCTATAACATTGTTGCGTAG+CGG + chr5_2:11437629-11437648 Msa0756850:intron 40.0%
AAAATTCGGCCACGATTTAG+TGG + chr5_2:11437675-11437694 Msa0756850:intron 40.0%
GGTTAGATACAAGATGGTCA+CGG - chr5_2:11438455-11438474 None:intergenic 40.0%
ACTCGTGGTTAGATACAAGA+TGG - chr5_2:11438461-11438480 None:intergenic 40.0%
ACTCTTACCTTCTGATGTGA+AGG + chr5_2:11438530-11438549 Msa0756850:CDS 40.0%
TGTTCAGAAGGAGAAGTTGA+TGG + chr5_2:11438812-11438831 Msa0756850:CDS 40.0%
! TTGATGGCTAATGCACTGAA+TGG + chr5_2:11438828-11438847 Msa0756850:CDS 40.0%
TGATGGCTAATGCACTGAAT+GGG + chr5_2:11438829-11438848 Msa0756850:CDS 40.0%
! CATTGTTGCGTAGCGGAATT+CGG + chr5_2:11437636-11437655 Msa0756850:intron 45.0%
AGCGCTATACCACTAAATCG+TGG - chr5_2:11437687-11437706 None:intergenic 45.0%
TGTTGAAATTGGAGACTCCC+AGG + chr5_2:11437967-11437986 Msa0756850:five_prime_UTR 45.0%
AGCGTCTCAAATGCAAGAAG+CGG - chr5_2:11438159-11438178 None:intergenic 45.0%
! GCATTTGAGACGCTTCTTAC+TGG + chr5_2:11438165-11438184 Msa0756850:five_prime_UTR 45.0%
AGCGTCTCAAATGCAAGAAG+CGG - chr5_2:11438159-11438178 None:intergenic 45.0%
! GCATTTGAGACGCTTCTTAC+TGG + chr5_2:11438165-11438184 Msa0756850:five_prime_UTR 45.0%
TCAACTTCAGTTTGGACTCG+TGG - chr5_2:11438476-11438495 None:intergenic 45.0%
! CATGGACTGAATCAACATCG+AGG + chr5_2:11438507-11438526 Msa0756850:CDS 45.0%
! CATTGTTGCGTAGCGGAATT+CGG + chr5_2:11437636-11437655 Msa0756850:intron 45.0%
AGCGCTATACCACTAAATCG+TGG - chr5_2:11437687-11437706 None:intergenic 45.0%
TGTTGAAATTGGAGACTCCC+AGG + chr5_2:11437967-11437986 Msa0756850:five_prime_UTR 45.0%
AGCGTCTCAAATGCAAGAAG+CGG - chr5_2:11438159-11438178 None:intergenic 45.0%
! GCATTTGAGACGCTTCTTAC+TGG + chr5_2:11438165-11438184 Msa0756850:five_prime_UTR 45.0%
AGCGTCTCAAATGCAAGAAG+CGG - chr5_2:11438159-11438178 None:intergenic 45.0%
! GCATTTGAGACGCTTCTTAC+TGG + chr5_2:11438165-11438184 Msa0756850:five_prime_UTR 45.0%
TCAACTTCAGTTTGGACTCG+TGG - chr5_2:11438476-11438495 None:intergenic 45.0%
! CATGGACTGAATCAACATCG+AGG + chr5_2:11438507-11438526 Msa0756850:CDS 45.0%
!! ATTGAATAAAATTAAAATTA+GGG - chr5_2:11437270-11437289 None:intergenic 5.0%
!! AATTGAATAAAATTAAAATT+AGG - chr5_2:11437271-11437290 None:intergenic 5.0%
!!! TAATATAAGAATTATAATTT+TGG - chr5_2:11438257-11438276 None:intergenic 5.0%
!! ATTGAATAAAATTAAAATTA+GGG - chr5_2:11437270-11437289 None:intergenic 5.0%
!! AATTGAATAAAATTAAAATT+AGG - chr5_2:11437271-11437290 None:intergenic 5.0%
!!! TAATATAAGAATTATAATTT+TGG - chr5_2:11438257-11438276 None:intergenic 5.0%
!! AACTTGGTGTTGACGCTCTG+AGG - chr5_2:11437179-11437198 None:intergenic 50.0%
GGAGACTCCCAGGAAACTAT+TGG + chr5_2:11437977-11437996 Msa0756850:five_prime_UTR 50.0%
GCGTCTCAAATGCAAGAAGC+GGG - chr5_2:11438158-11438177 None:intergenic 50.0%
!! AACTTGGTGTTGACGCTCTG+AGG - chr5_2:11437179-11437198 None:intergenic 50.0%
GGAGACTCCCAGGAAACTAT+TGG + chr5_2:11437977-11437996 Msa0756850:five_prime_UTR 50.0%
GCGTCTCAAATGCAAGAAGC+GGG - chr5_2:11438158-11438177 None:intergenic 50.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 11437128 11438854 11437128 ID=Msa0756850;Name=Msa0756850
chr5_2 mRNA 11437128 11438854 11437128 ID=Msa0756850-mRNA-1;Parent=Msa0756850;Name=Msa0756850-mRNA-1;_AED=0.12;_eAED=0.12;_QI=385|1|0.66|1|0.5|0.66|3|0|178
chr5_2 exon 11437128 11437209 11437128 ID=Msa0756850-mRNA-1:exon:5137;Parent=Msa0756850-mRNA-1
chr5_2 exon 11437896 11437998 11437896 ID=Msa0756850-mRNA-1:exon:5138;Parent=Msa0756850-mRNA-1
chr5_2 exon 11438121 11438854 11438121 ID=Msa0756850-mRNA-1:exon:5139;Parent=Msa0756850-mRNA-1
chr5_2 five_prime_UTR 11437128 11437209 11437128 ID=Msa0756850-mRNA-1:five_prime_utr;Parent=Msa0756850-mRNA-1
chr5_2 five_prime_UTR 11437896 11437998 11437896 ID=Msa0756850-mRNA-1:five_prime_utr;Parent=Msa0756850-mRNA-1
chr5_2 five_prime_UTR 11438121 11438320 11438121 ID=Msa0756850-mRNA-1:five_prime_utr;Parent=Msa0756850-mRNA-1
chr5_2 CDS 11438321 11438854 11438321 ID=Msa0756850-mRNA-1:cds;Parent=Msa0756850-mRNA-1
Gene Sequence

>Msa0756850

ATGGAAGGCATTAACAAACAGATTGAGGATGATCCGCTTCTTGCATTTGAGACGCTTCTTACTGGAGTGCAAAGTTATTCCATTAGAACTTTACTTCAAGAATTGAAGACTTTGATGGACTCATCATCAGACCGTGACCATCTTGTATCTAACCACGAGTCCAAACTGAAGTTGATTTCTCCTTTTCATGGACTGAATCAACATCGAGGACTCTTACCTTCTGATGTGAAGGAATTTGTTGAGATAGTGCAAAATTTCTTCAATGTCAACATAGTCAAACAGGACACTTCTCAACAAGTACTTAGGAAGCACAACCAACTTCTTGATTCGAAAACTGATCTTATGAACAAGCTTAGGAGTGCAAAGAGTACGCAAACCCAAATTGATAGTGAATCTTCAACTGCAAATGCGCAAATACACAAACTCTCTTTACAAATTGATGATCTTGTGAAACAAAGAGATGATTTGAAATCAGTAGTAAACAAATGTGATGTTCAGAAGGAGAAGTTGATGGCTAATGCACTGAATGGGCAC
Protein sequence

>Msa0756850

MEGINKQIEDDPLLAFETLLTGVQSYSIRTLLQELKTLMDSSSDRDHLVSNHESKLKLISPFHGLNQHRGLLPSDVKEFVEIVQNFFNVNIVKQDTSQQVLRKHNQLLDSKTDLMNKLRSAKSTQTQIDSESSTANAQIHKLSLQIDDLVKQRDDLKSVVNKCDVQKEKLMANALNGH