AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0340470


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0340470 MtrunA17_Chr2g0330081 83.774 265 31 1 1 253 1 265 1.05e-150 423
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0340470 AT3G13780.1 40.602 266 145 5 1 253 14 279 6.74e-54 177

Find 77 sgRNAs with CRISPR-Local

Find 152 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCACAAATTGATCCTGTTAG+AGG 0.319279 2_4:+61831048 Msa0340470:CDS
TGATCCGGAATGTGGAGAAT+TGG 0.345241 2_4:+61832501 Msa0340470:CDS
GAAATTCGAAATGGGTCATC+TGG 0.368369 2_4:+61830921 Msa0340470:CDS
GATCTTCAAGAAATTCGAAA+TGG 0.376754 2_4:+61830912 Msa0340470:CDS
TCATCCTCACTTTCTTTGCT+AGG 0.386031 2_4:-61832542 None:intergenic
GGATCATGCCCTTTGGATAC+TGG 0.392754 2_4:-61832484 None:intergenic
GTATCTTTGATATCTCTCTT+AGG 0.392852 2_4:-61832731 None:intergenic
TGTCTGTGAAAACACCCTTT+TGG 0.396143 2_4:+61830965 Msa0340470:CDS
TCAAAGTTATTACCTCTAAC+AGG 0.402555 2_4:-61831060 None:intergenic
AAGGAACTTGTTGCTAAGGT+TGG 0.407977 2_4:+61832659 Msa0340470:CDS
GATCCGGAATGTGGAGAATT+GGG 0.436535 2_4:+61832502 Msa0340470:CDS
AGGAACTTGTTGCTAAGGTT+GGG 0.441377 2_4:+61832660 Msa0340470:CDS
ACATTCCGGATCATGCCCTT+TGG 0.441791 2_4:-61832491 None:intergenic
AGGTTTCATTTCAAGTCGTT+GGG 0.451069 2_4:+61830845 Msa0340470:CDS
TGAGGATAAAAGGAAAATGA+AGG 0.453909 2_4:+61832574 Msa0340470:CDS
TGAGGAGGAGGAAGAGGAGG+AGG 0.454700 2_4:+61832865 Msa0340470:CDS
AAGGTTTCATTTCAAGTCGT+TGG 0.458103 2_4:+61830844 Msa0340470:CDS
CCTCTTCAAATTGAACCAAA+AGG 0.462476 2_4:-61830980 None:intergenic
ACACTGTTCGGACGAGGTTG+CGG 0.462850 2_4:+61830742 Msa0340470:CDS
TGACGATGAGGAGGAGGAAG+AGG 0.469148 2_4:+61832859 Msa0340470:CDS
TCGTTGGGAGAAACCCCATC+TGG 0.475641 2_4:+61830860 Msa0340470:CDS
TGGTGATAGTGAAGATGATA+AGG 0.481772 2_4:+61832640 Msa0340470:CDS
GCTGTGGCGGGGTAAAATCA+AGG 0.481950 2_4:+61832917 Msa0340470:exon
CTCTTCAAATTGAACCAAAA+GGG 0.482178 2_4:-61830979 None:intergenic
AATCAGACTCGTTGTTGAGT+TGG 0.499196 2_4:-61830810 None:intergenic
TGATAAGGAACTTGTTGCTA+AGG 0.499728 2_4:+61832655 Msa0340470:CDS
TTGTTCTTCAAAACCCAGAT+GGG 0.501960 2_4:-61830874 None:intergenic
GCAAGGTCTAAAGAAAATAG+AGG 0.503160 2_4:+61832707 Msa0340470:CDS
GATGACGAGGATGCTGTGGC+GGG 0.505221 2_4:+61832905 Msa0340470:CDS
TAGCAAAGAAAGTGAGGATG+AGG 0.513147 2_4:+61832544 Msa0340470:CDS
ACGACTTGAAATGAAACCTT+AGG 0.513835 2_4:-61830841 None:intergenic
AACAGCGATAAAACACTGTT+CGG 0.515120 2_4:+61830730 Msa0340470:CDS
ATCTTCAAGAAATTCGAAAT+GGG 0.522415 2_4:+61830913 Msa0340470:CDS
ACTCCCAATTCTCCACATTC+CGG 0.528495 2_4:-61832505 None:intergenic
AGTATCCAAAGGGCATGATC+CGG 0.532093 2_4:+61832486 Msa0340470:CDS
TGAAGAGGAAGAAGATGACG+AGG 0.532132 2_4:+61832892 Msa0340470:CDS
ATGGAGTTCGAAGGCGAAGA+TGG 0.533843 2_4:+61830688 Msa0340470:CDS
CGATGAGGAGGAGGAAGAGG+AGG 0.534580 2_4:+61832862 Msa0340470:CDS
GTCTGATTCAGAGCCTCCTA+AGG 0.535965 2_4:+61830825 Msa0340470:CDS
GAGGATAAAAGGAAAATGAA+GGG 0.536300 2_4:+61832575 Msa0340470:CDS
TGATGAAGAAGATGAGGATG+AGG 0.536649 2_4:+61832826 Msa0340470:CDS
AGAGGAGGAGGAGTTTGAAG+AGG 0.542676 2_4:+61832877 Msa0340470:CDS
TAACATCACAACACAGCACT+TGG 0.545873 2_4:-61832965 None:intergenic
TTAGACCTTGCGGAGTACCT+AGG 0.545892 2_4:-61832695 None:intergenic
AGATGACGAGGATGCTGTGG+CGG 0.565850 2_4:+61832904 Msa0340470:CDS
AAACAATGACGATGAGGAGG+AGG 0.568312 2_4:+61832853 Msa0340470:CDS
ATTGTTCTTCAAAACCCAGA+TGG 0.569608 2_4:-61830875 None:intergenic
CGTTGGGAGAAACCCCATCT+GGG 0.574231 2_4:+61830861 Msa0340470:CDS
TTGGGAAAGGTAAGAAACCT+AGG 0.574841 2_4:+61832678 Msa0340470:CDS
AACAAAGATGACGAGTGGAC+TGG 0.577011 2_4:+61832620 Msa0340470:CDS
CTTGTTGCTAAGGTTGGGAA+AGG 0.577595 2_4:+61832665 Msa0340470:CDS
GATAAAACACTGTTCGGACG+AGG 0.578913 2_4:+61830736 Msa0340470:CDS
GAGTTTGACCAGTATCCAAA+GGG 0.590357 2_4:+61832476 Msa0340470:CDS
AAAGGGCATGATCCGGAATG+TGG 0.603271 2_4:+61832493 Msa0340470:CDS
AGAAGATGACGAGGATGCTG+TGG 0.607746 2_4:+61832901 Msa0340470:CDS
CTGTGGCGGGGTAAAATCAA+GGG 0.609371 2_4:+61832918 Msa0340470:exon
GAAATGGGTCATCTGGAACT+CGG 0.619115 2_4:+61830928 Msa0340470:CDS
TGAGTTTGACCAGTATCCAA+AGG 0.622122 2_4:+61832475 Msa0340470:CDS
GATGATGATGAGACGCTAGG+AGG 0.630052 2_4:+61832791 Msa0340470:CDS
ACTTGAAATGAAACCTTAGG+AGG 0.632408 2_4:-61830838 None:intergenic
TGTTCTTCAAAACCCAGATG+GGG 0.634603 2_4:-61830873 None:intergenic
GGAGCCTAGCAAAGAAAGTG+AGG 0.635527 2_4:+61832538 Msa0340470:CDS
GAGACAACAAAGATGACGAG+TGG 0.639451 2_4:+61832615 Msa0340470:CDS
GAATTGGGAGTGGTTTCTCG+AGG 0.640949 2_4:+61832517 Msa0340470:CDS
TAATTCTGAATGGAGTTCGA+AGG 0.641013 2_4:+61830679 Msa0340470:exon
GGAATGTGGAGAATTGGGAG+TGG 0.641413 2_4:+61832507 Msa0340470:CDS
AGGATAAAAGGAAAATGAAG+GGG 0.646152 2_4:+61832576 Msa0340470:CDS
TGTTACTGATGAAGAAGATG+AGG 0.658205 2_4:+61832820 Msa0340470:CDS
GACGATGATGATGAGACGCT+AGG 0.666439 2_4:+61832788 Msa0340470:CDS
ACAAAACAATGACGATGAGG+AGG 0.667862 2_4:+61832850 Msa0340470:CDS
ATGACGAGGATGCTGTGGCG+GGG 0.679104 2_4:+61832906 Msa0340470:CDS
AGATATCAAAGATACTAGTG+TGG 0.683203 2_4:+61832739 Msa0340470:CDS
AGAAACCTAGGTACTCCGCA+AGG 0.683889 2_4:+61832690 Msa0340470:CDS
GGAACAAAACAATGACGATG+AGG 0.691982 2_4:+61832847 Msa0340470:CDS
TGTGGCGGGGTAAAATCAAG+GGG 0.695867 2_4:+61832919 Msa0340470:exon
CGTGATGACGAGAAACAGTG+TGG 0.730657 2_4:-61830780 None:intergenic
GTGGCGGGGTAAAATCAAGG+GGG 0.803835 2_4:+61832920 Msa0340470:exon

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAAATTCATATTCAATATA+AGG + chr2_4:61831772-61831791 Msa0340470:intron 10.0%
!! AATATATATATTATAGAAGA+AGG - chr2_4:61831808-61831827 None:intergenic 10.0%
!! AAAATTATTTCCATCAAAAA+GGG - chr2_4:61831086-61831105 None:intergenic 15.0%
!! AAAAATTATTTCCATCAAAA+AGG - chr2_4:61831087-61831106 None:intergenic 15.0%
!! AGAATTATAATATCCTTAAA+AGG - chr2_4:61831366-61831385 None:intergenic 15.0%
!! TTAAGGATATTATAATTCTA+AGG + chr2_4:61831367-61831386 Msa0340470:intron 15.0%
!! TAAGGATATTATAATTCTAA+GGG + chr2_4:61831368-61831387 Msa0340470:intron 15.0%
!!! GTTTTTAACTTATTTCAATA+AGG + chr2_4:61831490-61831509 Msa0340470:intron 15.0%
!!! TTATCTTTTGTTATAGAAAA+TGG + chr2_4:61831572-61831591 Msa0340470:intron 15.0%
!! CTTATATATAAGCATTTATA+TGG + chr2_4:61831595-61831614 Msa0340470:intron 15.0%
!! AATTCCAATATTATTATGTA+TGG + chr2_4:61831859-61831878 Msa0340470:intron 15.0%
!! ATTCCAATATTATTATGTAT+GGG + chr2_4:61831860-61831879 Msa0340470:intron 15.0%
!!! CTTTCAATTTTATTTTTTCT+TGG + chr2_4:61831899-61831918 Msa0340470:intron 15.0%
!! ATTATTCAGAAAAACATGTT+TGG - chr2_4:61830663-61830682 None:intergenic 20.0%
!!! TTTTTCTGAATAATTCTGAA+TGG + chr2_4:61830669-61830688 Msa0340470:exon 20.0%
!! GTTGTAACAAAATCAATAAT+TGG + chr2_4:61831158-61831177 Msa0340470:intron 20.0%
!! ATAAGTTAAAAACAAACTCA+TGG - chr2_4:61831483-61831502 None:intergenic 20.0%
!! TTCATATTCAATATAAGGTA+AGG + chr2_4:61831777-61831796 Msa0340470:intron 20.0%
!!! AATTTTGAAAATGCAGATTT+TGG + chr2_4:61832434-61832453 Msa0340470:intron 20.0%
! ATCTTCAAGAAATTCGAAAT+GGG + chr2_4:61830913-61830932 Msa0340470:CDS 25.0%
!!! TTTGAGAGTTTGTTTTGTAT+TGG + chr2_4:61831306-61831325 Msa0340470:intron 25.0%
!!! ATAATTCTAAGGGTCTTTTT+TGG + chr2_4:61831378-61831397 Msa0340470:intron 25.0%
! AATCTCACAGTTTATAATGA+TGG - chr2_4:61831424-61831443 None:intergenic 25.0%
!! TATAAACTGTGAGATTGTTT+TGG + chr2_4:61831428-61831447 Msa0340470:intron 25.0%
! TAAGTTGTTTATCCAAAACA+TGG + chr2_4:61831645-61831664 Msa0340470:intron 25.0%
! GATCCCATACATAATAATAT+TGG - chr2_4:61831866-61831885 None:intergenic 25.0%
!! CTTCATTCCTTTTGTAAATT+TGG + chr2_4:61831924-61831943 Msa0340470:intron 25.0%
! AACTCGAATATTACCTATAA+TGG + chr2_4:61831975-61831994 Msa0340470:intron 25.0%
! ACTCGAATATTACCTATAAT+GGG + chr2_4:61831976-61831995 Msa0340470:intron 25.0%
!!! TAAAAAGTGTTGAACTTTTC+TGG + chr2_4:61832046-61832065 Msa0340470:intron 25.0%
!!! AAAAAGTGTTGAACTTTTCT+GGG + chr2_4:61832047-61832066 Msa0340470:intron 25.0%
! AAAACAAATTCATGCGTAAA+TGG - chr2_4:61832369-61832388 None:intergenic 25.0%
!! AATTCACAATGATAGCTTTT+AGG + chr2_4:61832392-61832411 Msa0340470:intron 25.0%
!!! ATTTTGGTTTTCTTGTTATG+AGG + chr2_4:61832450-61832469 Msa0340470:CDS 25.0%
ATTCAGAAAAACATGTTTGG+CGG - chr2_4:61830660-61830679 None:intergenic 30.0%
!! GCTGTTTTGTAAAGAGAATT+TGG - chr2_4:61830716-61830735 None:intergenic 30.0%
GATCTTCAAGAAATTCGAAA+TGG + chr2_4:61830912-61830931 Msa0340470:CDS 30.0%
! TTTTCACAGACAAGCAAAAT+CGG - chr2_4:61830957-61830976 None:intergenic 30.0%
CTCTTCAAATTGAACCAAAA+GGG - chr2_4:61830982-61831001 None:intergenic 30.0%
TCAAAGTTATTACCTCTAAC+AGG - chr2_4:61831063-61831082 None:intergenic 30.0%
! ATAACTTTGACCCTTTTTGA+TGG + chr2_4:61831073-61831092 Msa0340470:intron 30.0%
! TATATTTGTGCAGCCTTTTA+AGG + chr2_4:61831350-61831369 Msa0340470:intron 30.0%
GAAGTTATGAAAACACTTCA+AGG + chr2_4:61831452-61831471 Msa0340470:intron 30.0%
! ATTAGATTTAGGCCATGTTT+TGG - chr2_4:61831660-61831679 None:intergenic 30.0%
CTCATGGTTGAATTAGATTT+AGG - chr2_4:61831671-61831690 None:intergenic 30.0%
ACCATGAGTACTATAGTTTA+TGG + chr2_4:61831683-61831702 Msa0340470:intron 30.0%
ACCATAAACTATAGTACTCA+TGG - chr2_4:61831687-61831706 None:intergenic 30.0%
GAATTTGTAACCAACTAAAG+AGG - chr2_4:61831844-61831863 None:intergenic 30.0%
CATGCAACCAAATTTACAAA+AGG - chr2_4:61831934-61831953 None:intergenic 30.0%
! CTTTTGTAAATTTGGTTGCA+TGG + chr2_4:61831932-61831951 Msa0340470:intron 30.0%
ACGAAGAATAATCCCATTAT+AGG - chr2_4:61831991-61832010 None:intergenic 30.0%
!!! AAAAGTGTTGAACTTTTCTG+GGG + chr2_4:61832048-61832067 Msa0340470:intron 30.0%
GGTTAGAAATCGAAATGAAA+TGG + chr2_4:61832069-61832088 Msa0340470:intron 30.0%
AATCGAAATGAAATGGTTGA+TGG + chr2_4:61832076-61832095 Msa0340470:intron 30.0%
ACTTGAAAATCTCTTTCTCA+AGG - chr2_4:61832136-61832155 None:intergenic 30.0%
TGAATTATACTACCCTTAGA+AGG - chr2_4:61832307-61832326 None:intergenic 30.0%
!! AGGATGATTTTGAGGATAAA+AGG + chr2_4:61832564-61832583 Msa0340470:CDS 30.0%
TGAGGATAAAAGGAAAATGA+AGG + chr2_4:61832574-61832593 Msa0340470:CDS 30.0%
GAGGATAAAAGGAAAATGAA+GGG + chr2_4:61832575-61832594 Msa0340470:CDS 30.0%
AGGATAAAAGGAAAATGAAG+GGG + chr2_4:61832576-61832595 Msa0340470:CDS 30.0%
! TCTATTTTCTTTAGACCTTG+CGG - chr2_4:61832708-61832727 None:intergenic 30.0%
GTATCTTTGATATCTCTCTT+AGG - chr2_4:61832734-61832753 None:intergenic 30.0%
AGATATCAAAGATACTAGTG+TGG + chr2_4:61832739-61832758 Msa0340470:CDS 30.0%
TAATTCTGAATGGAGTTCGA+AGG + chr2_4:61830679-61830698 Msa0340470:exon 35.0%
AACAGCGATAAAACACTGTT+CGG + chr2_4:61830730-61830749 Msa0340470:CDS 35.0%
ACTTGAAATGAAACCTTAGG+AGG - chr2_4:61830841-61830860 None:intergenic 35.0%
ACGACTTGAAATGAAACCTT+AGG - chr2_4:61830844-61830863 None:intergenic 35.0%
! AAGGTTTCATTTCAAGTCGT+TGG + chr2_4:61830844-61830863 Msa0340470:CDS 35.0%
! AGGTTTCATTTCAAGTCGTT+GGG + chr2_4:61830845-61830864 Msa0340470:CDS 35.0%
TTGTTCTTCAAAACCCAGAT+GGG - chr2_4:61830877-61830896 None:intergenic 35.0%
ATTGTTCTTCAAAACCCAGA+TGG - chr2_4:61830878-61830897 None:intergenic 35.0%
CCTCTTCAAATTGAACCAAA+AGG - chr2_4:61830983-61831002 None:intergenic 35.0%
!!! CCTTTTGGTTCAATTTGAAG+AGG + chr2_4:61830980-61830999 Msa0340470:CDS 35.0%
TCACAAATTGATCCTGTTAG+AGG + chr2_4:61831048-61831067 Msa0340470:CDS 35.0%
! GGATATGAGTTGCAAGTTTT+AGG + chr2_4:61831327-61831346 Msa0340470:intron 35.0%
CTTATTTCAATAAGGTCTCC+AGG + chr2_4:61831498-61831517 Msa0340470:intron 35.0%
GATAGCTTAATAGCGTTCTA+AGG + chr2_4:61831738-61831757 Msa0340470:intron 35.0%
!! TTGTTTTTCGAACTTGAGTG+TGG + chr2_4:61832022-61832041 Msa0340470:intron 35.0%
!! TGTTTTTCGAACTTGAGTGT+GGG + chr2_4:61832023-61832042 Msa0340470:intron 35.0%
!!! AAAAACGAGCTTTTTTCGTG+AGG - chr2_4:61832113-61832132 None:intergenic 35.0%
TGCTGAATTCATGTCAACAA+TGG + chr2_4:61832173-61832192 Msa0340470:intron 35.0%
TTATATCTTGTAAGTGCCTG+TGG + chr2_4:61832273-61832292 Msa0340470:intron 35.0%
! TGGTGATAGTGAAGATGATA+AGG + chr2_4:61832640-61832659 Msa0340470:CDS 35.0%
!! TGATAAGGAACTTGTTGCTA+AGG + chr2_4:61832655-61832674 Msa0340470:CDS 35.0%
GCAAGGTCTAAAGAAAATAG+AGG + chr2_4:61832707-61832726 Msa0340470:CDS 35.0%
TGTTACTGATGAAGAAGATG+AGG + chr2_4:61832820-61832839 Msa0340470:CDS 35.0%
AATCAGACTCGTTGTTGAGT+TGG - chr2_4:61830813-61830832 None:intergenic 40.0%
TGTTCTTCAAAACCCAGATG+GGG - chr2_4:61830876-61830895 None:intergenic 40.0%
GAAATTCGAAATGGGTCATC+TGG + chr2_4:61830921-61830940 Msa0340470:CDS 40.0%
! TGTCTGTGAAAACACCCTTT+TGG + chr2_4:61830965-61830984 Msa0340470:CDS 40.0%
GTCAATGACATTTCCTTAGC+AGG + chr2_4:61831243-61831262 Msa0340470:intron 40.0%
CTACATTGCAAATCCTGCTA+AGG - chr2_4:61831259-61831278 None:intergenic 40.0%
!! GCTATTTTCACAAGCTATCC+TGG - chr2_4:61831519-61831538 None:intergenic 40.0%
AACCAACTAAAGAGGAAAGC+AGG - chr2_4:61831836-61831855 None:intergenic 40.0%
GTTTAGCGTTGTTCACTTGA+TGG + chr2_4:61832332-61832351 Msa0340470:intron 40.0%
TGAGTTTGACCAGTATCCAA+AGG + chr2_4:61832475-61832494 Msa0340470:CDS 40.0%
GAGTTTGACCAGTATCCAAA+GGG + chr2_4:61832476-61832495 Msa0340470:CDS 40.0%
TCATCCTCACTTTCTTTGCT+AGG - chr2_4:61832545-61832564 None:intergenic 40.0%
TAGCAAAGAAAGTGAGGATG+AGG + chr2_4:61832544-61832563 Msa0340470:CDS 40.0%
! TGAGGATGAGGATGATTTTG+AGG + chr2_4:61832556-61832575 Msa0340470:CDS 40.0%
!! AAGGAACTTGTTGCTAAGGT+TGG + chr2_4:61832659-61832678 Msa0340470:CDS 40.0%
!! AGGAACTTGTTGCTAAGGTT+GGG + chr2_4:61832660-61832679 Msa0340470:CDS 40.0%
TTGGGAAAGGTAAGAAACCT+AGG + chr2_4:61832678-61832697 Msa0340470:CDS 40.0%
TGATGAAGAAGATGAGGATG+AGG + chr2_4:61832826-61832845 Msa0340470:CDS 40.0%
GGAACAAAACAATGACGATG+AGG + chr2_4:61832847-61832866 Msa0340470:CDS 40.0%
ACAAAACAATGACGATGAGG+AGG + chr2_4:61832850-61832869 Msa0340470:CDS 40.0%
TAACATCACAACACAGCACT+TGG - chr2_4:61832968-61832987 None:intergenic 40.0%
GATAAAACACTGTTCGGACG+AGG + chr2_4:61830736-61830755 Msa0340470:CDS 45.0%
! GAAATGGGTCATCTGGAACT+CGG + chr2_4:61830928-61830947 Msa0340470:CDS 45.0%
CAACTAAAGAGGAAAGCAGG+AGG - chr2_4:61831833-61831852 None:intergenic 45.0%
CTCCTGCTTTCCTCTTTAGT+TGG + chr2_4:61831831-61831850 Msa0340470:intron 45.0%
! AGTATCCAAAGGGCATGATC+CGG + chr2_4:61832486-61832505 Msa0340470:CDS 45.0%
TGATCCGGAATGTGGAGAAT+TGG + chr2_4:61832501-61832520 Msa0340470:CDS 45.0%
GATCCGGAATGTGGAGAATT+GGG + chr2_4:61832502-61832521 Msa0340470:CDS 45.0%
ACTCCCAATTCTCCACATTC+CGG - chr2_4:61832508-61832527 None:intergenic 45.0%
GAGACAACAAAGATGACGAG+TGG + chr2_4:61832615-61832634 Msa0340470:CDS 45.0%
AACAAAGATGACGAGTGGAC+TGG + chr2_4:61832620-61832639 Msa0340470:CDS 45.0%
CTTGTTGCTAAGGTTGGGAA+AGG + chr2_4:61832665-61832684 Msa0340470:CDS 45.0%
AAACAATGACGATGAGGAGG+AGG + chr2_4:61832853-61832872 Msa0340470:CDS 45.0%
TGAAGAGGAAGAAGATGACG+AGG + chr2_4:61832892-61832911 Msa0340470:CDS 45.0%
!!! ATCATTTAAAATATAATTTT+TGG + chr2_4:61832227-61832246 Msa0340470:intron 5.0%
ATGGAGTTCGAAGGCGAAGA+TGG + chr2_4:61830688-61830707 Msa0340470:CDS 50.0%
! CGTGATGACGAGAAACAGTG+TGG - chr2_4:61830783-61830802 None:intergenic 50.0%
GTCTGATTCAGAGCCTCCTA+AGG + chr2_4:61830825-61830844 Msa0340470:CDS 50.0%
TTAGAAGGCTACACAGCCAC+AGG - chr2_4:61832292-61832311 None:intergenic 50.0%
TGTGGCTGTGTAGCCTTCTA+AGG + chr2_4:61832291-61832310 Msa0340470:intron 50.0%
GTGGCTGTGTAGCCTTCTAA+GGG + chr2_4:61832292-61832311 Msa0340470:intron 50.0%
GGATCATGCCCTTTGGATAC+TGG - chr2_4:61832487-61832506 None:intergenic 50.0%
ACATTCCGGATCATGCCCTT+TGG - chr2_4:61832494-61832513 None:intergenic 50.0%
! AAAGGGCATGATCCGGAATG+TGG + chr2_4:61832493-61832512 Msa0340470:CDS 50.0%
GGAATGTGGAGAATTGGGAG+TGG + chr2_4:61832507-61832526 Msa0340470:CDS 50.0%
GAATTGGGAGTGGTTTCTCG+AGG + chr2_4:61832517-61832536 Msa0340470:CDS 50.0%
GGAGCCTAGCAAAGAAAGTG+AGG + chr2_4:61832538-61832557 Msa0340470:CDS 50.0%
AGAAACCTAGGTACTCCGCA+AGG + chr2_4:61832690-61832709 Msa0340470:CDS 50.0%
! TTAGACCTTGCGGAGTACCT+AGG - chr2_4:61832698-61832717 None:intergenic 50.0%
! GACGATGATGATGAGACGCT+AGG + chr2_4:61832788-61832807 Msa0340470:CDS 50.0%
! GATGATGATGAGACGCTAGG+AGG + chr2_4:61832791-61832810 Msa0340470:CDS 50.0%
AGAGGAGGAGGAGTTTGAAG+AGG + chr2_4:61832877-61832896 Msa0340470:CDS 50.0%
AGAAGATGACGAGGATGCTG+TGG + chr2_4:61832901-61832920 Msa0340470:CDS 50.0%
! CTGTGGCGGGGTAAAATCAA+GGG + chr2_4:61832918-61832937 Msa0340470:exon 50.0%
! TGTGGCGGGGTAAAATCAAG+GGG + chr2_4:61832919-61832938 Msa0340470:exon 50.0%
ACACTGTTCGGACGAGGTTG+CGG + chr2_4:61830742-61830761 Msa0340470:CDS 55.0%
TCGTTGGGAGAAACCCCATC+TGG + chr2_4:61830860-61830879 Msa0340470:CDS 55.0%
CGTTGGGAGAAACCCCATCT+GGG + chr2_4:61830861-61830880 Msa0340470:CDS 55.0%
TGACGATGAGGAGGAGGAAG+AGG + chr2_4:61832859-61832878 Msa0340470:CDS 55.0%
AGATGACGAGGATGCTGTGG+CGG + chr2_4:61832904-61832923 Msa0340470:CDS 55.0%
! GCTGTGGCGGGGTAAAATCA+AGG + chr2_4:61832917-61832936 Msa0340470:exon 55.0%
! GTGGCGGGGTAAAATCAAGG+GGG + chr2_4:61832920-61832939 Msa0340470:exon 55.0%
CGATGAGGAGGAGGAAGAGG+AGG + chr2_4:61832862-61832881 Msa0340470:CDS 60.0%
TGAGGAGGAGGAAGAGGAGG+AGG + chr2_4:61832865-61832884 Msa0340470:CDS 60.0%
GATGACGAGGATGCTGTGGC+GGG + chr2_4:61832905-61832924 Msa0340470:CDS 60.0%
ATGACGAGGATGCTGTGGCG+GGG + chr2_4:61832906-61832925 Msa0340470:CDS 60.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 61830639 61833181 61830639 ID=Msa0340470;Name=Msa0340470
chr2_4 mRNA 61830639 61833181 61830639 ID=Msa0340470-mRNA-1;Parent=Msa0340470;Name=Msa0340470-mRNA-1;_AED=0.00;_eAED=0.00;_QI=49|1|1|1|1|1|2|250|287
chr2_4 exon 61830639 61831069 61830639 ID=Msa0340470-mRNA-1:exon:19547;Parent=Msa0340470-mRNA-1
chr2_4 exon 61832450 61833181 61832450 ID=Msa0340470-mRNA-1:exon:19548;Parent=Msa0340470-mRNA-1
chr2_4 five_prime_UTR 61830639 61830687 61830639 ID=Msa0340470-mRNA-1:five_prime_utr;Parent=Msa0340470-mRNA-1
chr2_4 CDS 61830688 61831069 61830688 ID=Msa0340470-mRNA-1:cds;Parent=Msa0340470-mRNA-1
chr2_4 CDS 61832450 61832931 61832450 ID=Msa0340470-mRNA-1:cds;Parent=Msa0340470-mRNA-1
chr2_4 three_prime_UTR 61832932 61833181 61832932 ID=Msa0340470-mRNA-1:three_prime_utr;Parent=Msa0340470-mRNA-1
Gene Sequence

>Msa0340470

ATGGAGTTCGAAGGCGAAGATGGTTCCAAATTCTCTTTACAAAACAGCGATAAAACACTGTTCGGACGAGGTTGCGGTTTTGATACAAAAGACCACACTGTTTCTCGTCATCACGTTTCGTTCCAACTCAACAACGAGTCTGATTCAGAGCCTCCTAAGGTTTCATTTCAAGTCGTTGGGAGAAACCCCATCTGGGTTTTGAAGAACAATGACGAAACGCTTAAGATCTTCAAGAAATTCGAAATGGGTCATCTGGAACTCGGTGACCGATTTTGCTTGTCTGTGAAAACACCCTTTTGGTTCAATTTGAAGAGGAGTGAAGATTCTGAGAGTGAGATTGAATTTGATCAACTTGATATTTCACAAATTGATCCTGTTAGAGATTTTGGTTTTCTTGTTATGAGGCATGAGTTTGACCAGTATCCAAAGGGCATGATCCGGAATGTGGAGAATTGGGAGTGGTTTCTCGAGGAGCCTAGCAAAGAAAGTGAGGATGAGGATGATTTTGAGGATAAAAGGAAAATGAAGGGGAAGCGAAAAGTATTTAGAGACAACAAAGATGACGAGTGGACTGGTGATAGTGAAGATGATAAGGAACTTGTTGCTAAGGTTGGGAAAGGTAAGAAACCTAGGTACTCCGCAAGGTCTAAAGAAAATAGAGGACCTAAGAGAGATATCAAAGATACTAGTGTGGATGAAAATGATGAAGAAGATGATGACGACGATGATGATGAGACGCTAGGAGGCTTCATTGTTACTGATGAAGAAGATGAGGATGAGGAACAAAACAATGACGATGAGGAGGAGGAAGAGGAGGAGGAGTTTGAAGAGGAAGAAGATGACGAGGATGCTGTGGCGGGGTAA

Protein sequence

>Msa0340470

MEFEGEDGSKFSLQNSDKTLFGRGCGFDTKDHTVSRHHVSFQLNNESDSEPPKVSFQVVGRNPIWVLKNNDETLKIFKKFEMGHLELGDRFCLSVKTPFWFNLKRSEDSESEIEFDQLDISQIDPVRDFGFLVMRHEFDQYPKGMIRNVENWEWFLEEPSKESEDEDDFEDKRKMKGKRKVFRDNKDDEWTGDSEDDKELVAKVGKGKKPRYSARSKENRGPKRDIKDTSVDENDEEDDDDDDDETLGGFIVTDEEDEDEEQNNDDEEEEEEEEFEEEEDDEDAVAG*