Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0757150 | sp|O23179|PLP1_ARATH | 56.397 | 383 | 164 | 2 | 8 | 390 | 17 | 396 | 2.92e-159 | 457 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0757150 | G7K805 | 96.222 | 397 | 14 | 1 | 1 | 397 | 1 | 396 | 0.0 | 781 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0715220 | Msa0757150 | 0.807219 | 5.623892e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0757150 | MtrunA17_Chr5g0402451 | 96.222 | 397 | 14 | 1 | 1 | 397 | 1 | 396 | 0.0 | 781 |
| Msa0757150 | MtrunA17_Chr5g0402441 | 89.340 | 394 | 38 | 3 | 4 | 397 | 10 | 399 | 0.0 | 712 |
| Msa0757150 | MtrunA17_Chr1g0153781 | 55.584 | 394 | 169 | 3 | 1 | 390 | 9 | 400 | 2.55e-158 | 452 |
| Msa0757150 | MtrunA17_Chr3g0133681 | 55.875 | 383 | 166 | 2 | 8 | 390 | 18 | 397 | 1.49e-147 | 424 |
| Msa0757150 | MtrunA17_Chr3g0133691 | 55.875 | 383 | 166 | 2 | 8 | 390 | 18 | 397 | 2.41e-147 | 424 |
| Msa0757150 | MtrunA17_Chr8g0335651 | 44.588 | 388 | 183 | 8 | 8 | 392 | 31 | 389 | 5.68e-87 | 270 |
| Msa0757150 | MtrunA17_Chr8g0335581 | 39.541 | 392 | 212 | 10 | 8 | 392 | 19 | 392 | 1.15e-78 | 248 |
| Msa0757150 | MtrunA17_Chr8g0335611 | 39.164 | 383 | 213 | 8 | 10 | 389 | 32 | 397 | 1.24e-78 | 248 |
| Msa0757150 | MtrunA17_Chr8g0335621 | 38.832 | 394 | 218 | 9 | 10 | 397 | 63 | 439 | 2.39e-78 | 248 |
| Msa0757150 | MtrunA17_Chr8g0335631 | 41.013 | 395 | 208 | 8 | 8 | 397 | 30 | 404 | 5.64e-74 | 236 |
| Msa0757150 | MtrunA17_Chr8g0335591 | 37.755 | 392 | 221 | 8 | 10 | 396 | 32 | 405 | 1.28e-72 | 233 |
| Msa0757150 | MtrunA17_Chr1g0199801 | 30.532 | 357 | 212 | 11 | 10 | 351 | 75 | 410 | 1.12e-35 | 136 |
| Msa0757150 | MtrunA17_Chr1g0185551 | 26.349 | 315 | 191 | 12 | 12 | 318 | 32 | 313 | 4.11e-26 | 108 |
| Msa0757150 | MtrunA17_Chr7g0259871 | 24.713 | 348 | 220 | 11 | 12 | 350 | 32 | 346 | 9.96e-21 | 92.8 |
| Msa0757150 | MtrunA17_Chr2g0292051 | 27.551 | 392 | 221 | 19 | 10 | 392 | 69 | 406 | 4.81e-20 | 91.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0757150 | AT4G37070.2 | 56.397 | 383 | 164 | 2 | 8 | 390 | 17 | 396 | 2.97e-160 | 457 |
| Msa0757150 | AT4G37060.1 | 57.068 | 382 | 161 | 2 | 9 | 390 | 18 | 396 | 1.90e-157 | 450 |
| Msa0757150 | AT4G37070.3 | 57.027 | 370 | 156 | 2 | 8 | 377 | 17 | 383 | 5.47e-156 | 445 |
| Msa0757150 | AT4G37070.1 | 57.027 | 370 | 156 | 2 | 8 | 377 | 17 | 383 | 5.47e-156 | 445 |
| Msa0757150 | AT2G26560.1 | 58.031 | 386 | 150 | 5 | 8 | 389 | 17 | 394 | 2.53e-153 | 439 |
| Msa0757150 | AT4G37060.2 | 52.785 | 413 | 161 | 3 | 9 | 390 | 18 | 427 | 1.31e-150 | 434 |
| Msa0757150 | AT4G37050.1 | 58.612 | 389 | 154 | 3 | 9 | 391 | 34 | 421 | 2.69e-150 | 432 |
| Msa0757150 | AT4G37070.4 | 54.595 | 370 | 154 | 3 | 8 | 377 | 17 | 372 | 7.34e-146 | 419 |
| Msa0757150 | AT5G43590.1 | 53.368 | 386 | 166 | 8 | 8 | 389 | 12 | 387 | 4.21e-119 | 352 |
| Msa0757150 | AT5G43590.2 | 53.368 | 386 | 166 | 8 | 8 | 389 | 79 | 454 | 4.28e-118 | 352 |
| Msa0757150 | AT3G54950.1 | 32.081 | 346 | 208 | 10 | 10 | 351 | 98 | 420 | 3.00e-39 | 147 |
| Msa0757150 | AT2G39220.1 | 31.988 | 347 | 210 | 10 | 10 | 351 | 108 | 433 | 9.26e-38 | 142 |
| Msa0757150 | AT4G29800.1 | 29.477 | 363 | 215 | 11 | 6 | 350 | 117 | 456 | 1.34e-31 | 126 |
| Msa0757150 | AT4G29800.2 | 29.945 | 364 | 213 | 12 | 6 | 350 | 117 | 457 | 1.74e-31 | 125 |
| Msa0757150 | AT3G63200.1 | 25.545 | 321 | 196 | 11 | 12 | 322 | 32 | 319 | 2.26e-26 | 109 |
Find 84 sgRNAs with CRISPR-Local
Find 197 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCTCAATGGTGCCTTTATC+TGG | 0.217186 | 5_2:-11917839 | None:intergenic |
| ATGCTAAGATGGTTGCTAAA+TGG | 0.247274 | 5_2:+11916867 | Msa0757150:CDS |
| ATTTCTTTGGCAGCAAATAA+TGG | 0.285222 | 5_2:-11915637 | None:intergenic |
| TAACAACGTTTGTCAAAGTT+TGG | 0.299732 | 5_2:-11915973 | None:intergenic |
| ATCACTGTTCTTAGCATTGA+TGG | 0.321271 | 5_2:+11915341 | Msa0757150:CDS |
| TTTGAAACAGTTCCAGATAA+AGG | 0.323156 | 5_2:+11917827 | Msa0757150:CDS |
| GAGATTGAAGGGCAGTAAAA+AGG | 0.329901 | 5_2:-11916985 | None:intergenic |
| GTAGAATGGCACAATTTCTT+TGG | 0.336854 | 5_2:-11915650 | None:intergenic |
| CGGTTATTAGCCTTTGGATT+TGG | 0.338215 | 5_2:-11915613 | None:intergenic |
| TTGACAGGATCCAAGTATAA+TGG | 0.347903 | 5_2:+11915899 | Msa0757150:CDS |
| TGACAGGATCCAAGTATAAT+GGG | 0.352506 | 5_2:+11915900 | Msa0757150:CDS |
| CTACCTTGAATCTCAACTTC+AGG | 0.365376 | 5_2:+11915403 | Msa0757150:CDS |
| TGTTTGCATTGCAGGTTTGC+TGG | 0.376527 | 5_2:+11918410 | Msa0757150:intron |
| TGCTAAGATGGTTGCTAAAT+GGG | 0.379655 | 5_2:+11916868 | Msa0757150:CDS |
| AATGGACGGTTATTAGCCTT+TGG | 0.389946 | 5_2:-11915619 | None:intergenic |
| GAAACAGGAAGATACATTAC+AGG | 0.392737 | 5_2:+11917691 | Msa0757150:intron |
| AGAAGTGGGGATAATGGTAT+AGG | 0.393621 | 5_2:+11916782 | Msa0757150:CDS |
| TTATCCCCACTTCTCCCATC+TGG | 0.399340 | 5_2:-11916773 | None:intergenic |
| CAATGAAGCAAGCAATGATA+TGG | 0.405444 | 5_2:+11916943 | Msa0757150:CDS |
| AATAATTAAAACTACCTGAT+AGG | 0.406865 | 5_2:-11916041 | None:intergenic |
| GATGGGAGAAGTGGGGATAA+TGG | 0.430947 | 5_2:+11916776 | Msa0757150:CDS |
| AAGTCTTTGTTGTGTTTATG+AGG | 0.434470 | 5_2:-11915877 | None:intergenic |
| TTTGAATAATCTAGTAAAAG+TGG | 0.438859 | 5_2:+11917751 | Msa0757150:CDS |
| GGCGTCAGAGGAATCATTCC+TGG | 0.439433 | 5_2:+11915368 | Msa0757150:CDS |
| AAACCTGAAGTTGAGATTCA+AGG | 0.467692 | 5_2:-11915406 | None:intergenic |
| GAAGTGGGGATAATGGTATA+GGG | 0.474757 | 5_2:+11916783 | Msa0757150:CDS |
| AACACAACAAAGACTTTGAC+AGG | 0.476709 | 5_2:+11915884 | Msa0757150:CDS |
| GAGATACTCCCCATTATACT+TGG | 0.481242 | 5_2:-11915909 | None:intergenic |
| CAGGTTTGCTGGTTTACTCT+CGG | 0.481566 | 5_2:+11918421 | Msa0757150:intron |
| TACACGAGTGAATTTAGATA+CGG | 0.484931 | 5_2:+11917799 | Msa0757150:CDS |
| TAGTGAGCTGGTAAATAAGT+TGG | 0.487210 | 5_2:-11916289 | None:intergenic |
| AGGAAACCAGATGGGAGAAG+TGG | 0.489397 | 5_2:+11916767 | Msa0757150:CDS |
| GGTAGTTGTCTTGAGATTGA+AGG | 0.493175 | 5_2:-11916997 | None:intergenic |
| TCATATTTCTGATCAGCTTG+TGG | 0.494064 | 5_2:-11915931 | None:intergenic |
| TCATTGAAACAATCTAGTAT+TGG | 0.496446 | 5_2:-11916926 | None:intergenic |
| ATTGTTATATCGATAGGGAC+AGG | 0.498950 | 5_2:+11916818 | Msa0757150:CDS |
| CTAAATGGGGTGCATTGACT+TGG | 0.502394 | 5_2:+11916882 | Msa0757150:CDS |
| GTAATTGCCGGGACAAGTAC+AGG | 0.508616 | 5_2:+11915562 | Msa0757150:CDS |
| TGGATTTGGTGCTGCTAACA+TGG | 0.511228 | 5_2:-11915599 | None:intergenic |
| AGTTTCTGAACATCAAAAGA+TGG | 0.514848 | 5_2:-11915998 | None:intergenic |
| AAGTGACAAAGCATATCATA+AGG | 0.518189 | 5_2:+11916747 | Msa0757150:CDS |
| AGTCTTTGTTGTGTTTATGA+GGG | 0.522407 | 5_2:-11915876 | None:intergenic |
| AAAGAATACAACCTCATTGA+CGG | 0.525528 | 5_2:+11916346 | Msa0757150:CDS |
| TTGAATAATCTAGTAAAAGT+GGG | 0.529289 | 5_2:+11917752 | Msa0757150:CDS |
| TGGTGTGGCTGCTAACAATC+CGG | 0.532379 | 5_2:+11916369 | Msa0757150:CDS |
| AGATAGACGGCGAGGATGCA+AGG | 0.542358 | 5_2:+11915521 | Msa0757150:CDS |
| CCATTGAGGAAGAACTCAAA+AGG | 0.542620 | 5_2:+11917852 | Msa0757150:CDS |
| TTGACTTGGTTATTCAACAA+TGG | 0.544592 | 5_2:+11916896 | Msa0757150:CDS |
| GGAAACCAGATGGGAGAAGT+GGG | 0.551573 | 5_2:+11916768 | Msa0757150:CDS |
| GTAGTTGTCTTGAGATTGAA+GGG | 0.559050 | 5_2:-11916996 | None:intergenic |
| GTTCTTAGCATTGATGGTGG+AGG | 0.559782 | 5_2:+11915347 | Msa0757150:CDS |
| GAGACCACCTGTACTTGTCC+CGG | 0.561120 | 5_2:-11915569 | None:intergenic |
| GTCTTTGTTGTGTTTATGAG+GGG | 0.565853 | 5_2:-11915875 | None:intergenic |
| GAGAGTAGTACATCTAAAGC+TGG | 0.566877 | 5_2:-11916238 | None:intergenic |
| AGATATTTGCATAGCTACAT+CGG | 0.569187 | 5_2:+11916261 | Msa0757150:CDS |
| CTTTGGCAGCAAATAATGGA+CGG | 0.569663 | 5_2:-11915633 | None:intergenic |
| ACACGAGTGAATTTAGATAC+GGG | 0.570644 | 5_2:+11917800 | Msa0757150:CDS |
| GCGCAAGTACAATGCTAAGA+TGG | 0.573767 | 5_2:+11916856 | Msa0757150:CDS |
| ATTGATGGTGGAGGCGTCAG+AGG | 0.577961 | 5_2:+11915356 | Msa0757150:CDS |
| AGAACAGTGATGAAATTCAC+AGG | 0.591725 | 5_2:-11915329 | None:intergenic |
| AATTAAAACTACCTGATAGG+AGG | 0.595673 | 5_2:-11916038 | None:intergenic |
| ATTACTTTACAGGAGATAGA+CGG | 0.600524 | 5_2:+11915508 | Msa0757150:intron |
| AAACAGGAAGATACATTACA+GGG | 0.601655 | 5_2:+11917692 | Msa0757150:intron |
| CTTAACTTACTTGAATTCTG+AGG | 0.602574 | 5_2:-11917018 | None:intergenic |
| TCCAGATAAAGGCACCATTG+AGG | 0.621459 | 5_2:+11917838 | Msa0757150:CDS |
| ACTGTTCTTAGCATTGATGG+TGG | 0.626560 | 5_2:+11915344 | Msa0757150:CDS |
| ATATCATAAGGAAACCAGAT+GGG | 0.629961 | 5_2:+11916759 | Msa0757150:CDS |
| CATATCATAAGGAAACCAGA+TGG | 0.632027 | 5_2:+11916758 | Msa0757150:CDS |
| AGCTGATCAGAAATATGACA+AGG | 0.632561 | 5_2:+11915936 | Msa0757150:CDS |
| AAACAGGCAGACCTTTGCTG+TGG | 0.640107 | 5_2:-11915697 | None:intergenic |
| CAGCCACACCACCGTCAATG+AGG | 0.642701 | 5_2:-11916357 | None:intergenic |
| CTGAAGTTGAGATTCAAGGT+AGG | 0.644708 | 5_2:-11915402 | None:intergenic |
| CAACCTCATTGACGGTGGTG+TGG | 0.650004 | 5_2:+11916354 | Msa0757150:CDS |
| GTTAGCAGCACCAAATCCAA+AGG | 0.650775 | 5_2:+11915603 | Msa0757150:CDS |
| GACAGGATCCAAGTATAATG+GGG | 0.665880 | 5_2:+11915901 | Msa0757150:CDS |
| AGGTAGGCAAGAATAACACC+AGG | 0.666909 | 5_2:-11915386 | None:intergenic |
| GCTAAGATGGTTGCTAAATG+GGG | 0.667354 | 5_2:+11916869 | Msa0757150:CDS |
| GCTGATCAGAAATATGACAA+GGG | 0.691046 | 5_2:+11915937 | Msa0757150:CDS |
| ACAGGAAGATACATTACAGG+GGG | 0.697116 | 5_2:+11917694 | Msa0757150:intron |
| GAAACCAGATGGGAGAAGTG+GGG | 0.707369 | 5_2:+11916769 | Msa0757150:CDS |
| TTTACAGGAGATAGACGGCG+AGG | 0.715249 | 5_2:+11915513 | Msa0757150:intron |
| ATTGCCGGGACAAGTACAGG+TGG | 0.725577 | 5_2:+11915565 | Msa0757150:CDS |
| GAATACAACCTCATTGACGG+TGG | 0.739887 | 5_2:+11916349 | Msa0757150:CDS |
| AACAGGAAGATACATTACAG+GGG | 0.742212 | 5_2:+11917693 | Msa0757150:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTAATTACTAAATTTGTA+AGG | + | chr5_2:11916508-11916527 | Msa0757150:intron | 10.0% |
| !! | TCATATCTTTAAATTAATAA+TGG | + | chr5_2:11917600-11917619 | Msa0757150:intron | 10.0% |
| !! | TTCTAATTAACTTAAAAATA+GGG | - | chr5_2:11918010-11918029 | None:intergenic | 10.0% |
| !! | ATTCTAATTAACTTAAAAAT+AGG | - | chr5_2:11918011-11918030 | None:intergenic | 10.0% |
| !!! | AAACATATATAATTAGTTTT+AGG | - | chr5_2:11918395-11918414 | None:intergenic | 10.0% |
| !!! | TATTAGTATTGTTAGTTTTT+AGG | - | chr5_2:11915832-11915851 | None:intergenic | 15.0% |
| !!! | TTAAAACAAGTTTTGATATA+TGG | + | chr5_2:11916570-11916589 | Msa0757150:intron | 15.0% |
| !! | AAGCAAATATATAAAAATAG+TGG | + | chr5_2:11917390-11917409 | Msa0757150:intron | 15.0% |
| !! | AGCAAATATATAAAAATAGT+GGG | + | chr5_2:11917391-11917410 | Msa0757150:intron | 15.0% |
| !! | TTTAAATTGTTACAAACTTA+CGG | + | chr5_2:11917658-11917677 | Msa0757150:intron | 15.0% |
| !!! | TAGTGATTGAAAATTTTATA+AGG | - | chr5_2:11917979-11917998 | None:intergenic | 15.0% |
| !! | GAAAAGTTATCATATTTATA+AGG | + | chr5_2:11918285-11918304 | Msa0757150:intron | 15.0% |
| !!! | TAAATGGTTAAATATGTTTT+TGG | - | chr5_2:11918312-11918331 | None:intergenic | 15.0% |
| !! | ATAGATACCAAAAATTAAAC+AGG | - | chr5_2:11915716-11915735 | None:intergenic | 20.0% |
| !! | AGTATAAATACATGAAAATC+TGG | + | chr5_2:11915771-11915790 | Msa0757150:intron | 20.0% |
| !! | AATACTAATATTATATGCAG+TGG | + | chr5_2:11915842-11915861 | Msa0757150:intron | 20.0% |
| !! | AATAATTAAAACTACCTGAT+AGG | - | chr5_2:11916044-11916063 | None:intergenic | 20.0% |
| !!! | TCTTTTCTTCTTTTTAATGT+GGG | - | chr5_2:11916440-11916459 | None:intergenic | 20.0% |
| !!! | ATCTTTTCTTCTTTTTAATG+TGG | - | chr5_2:11916441-11916460 | None:intergenic | 20.0% |
| !!! | GTTTTATTGTTATATCGATA+GGG | + | chr5_2:11916813-11916832 | Msa0757150:CDS | 20.0% |
| !! | AATGTACTATAGATAAGATT+TGG | - | chr5_2:11917561-11917580 | None:intergenic | 20.0% |
| !! | TTTGAATAATCTAGTAAAAG+TGG | + | chr5_2:11917751-11917770 | Msa0757150:CDS | 20.0% |
| !! | TTGAATAATCTAGTAAAAGT+GGG | + | chr5_2:11917752-11917771 | Msa0757150:CDS | 20.0% |
| !!! | AAAATTTTAAAAGGGCTAAA+AGG | - | chr5_2:11917941-11917960 | None:intergenic | 20.0% |
| !!! | GTTGAAGGAAAATTTTAAAA+GGG | - | chr5_2:11917949-11917968 | None:intergenic | 20.0% |
| !!! | AGTTGAAGGAAAATTTTAAA+AGG | - | chr5_2:11917950-11917969 | None:intergenic | 20.0% |
| !!! | AAATTTTCAATCACTACTTT+TGG | + | chr5_2:11917983-11918002 | Msa0757150:intron | 20.0% |
| !!! | AAAATTTTCATCTTCACTTT+TGG | - | chr5_2:11918221-11918240 | None:intergenic | 20.0% |
| !!! | GTGAAGATGAAAATTTTTTT+AGG | + | chr5_2:11918224-11918243 | Msa0757150:intron | 20.0% |
| !!! | ATATAATTAGTTTTAGGAGT+TGG | - | chr5_2:11918389-11918408 | None:intergenic | 20.0% |
| !! | GTATATGTTGATTACTTTAC+AGG | + | chr5_2:11915498-11915517 | Msa0757150:intron | 25.0% |
| !!! | GATTATTTTGATGTAATTGC+CGG | + | chr5_2:11915550-11915569 | Msa0757150:CDS | 25.0% |
| !!! | ATTATTTTGATGTAATTGCC+GGG | + | chr5_2:11915551-11915570 | Msa0757150:CDS | 25.0% |
| !!! | AAATATTTGGCAAGTTTTGA+AGG | - | chr5_2:11915675-11915694 | None:intergenic | 25.0% |
| ! | TAAATACATGAAAATCTGGT+TGG | + | chr5_2:11915775-11915794 | Msa0757150:intron | 25.0% |
| ! | AAATACATGAAAATCTGGTT+GGG | + | chr5_2:11915776-11915795 | Msa0757150:intron | 25.0% |
| !!! | AGTATTGTTAGTTTTTAGGA+TGG | - | chr5_2:11915828-11915847 | None:intergenic | 25.0% |
| ! | TTCCAAAAAAAAGATGAACA+TGG | + | chr5_2:11916313-11916332 | Msa0757150:CDS | 25.0% |
| ! | TCCAAAAAAAAGATGAACAT+GGG | + | chr5_2:11916314-11916333 | Msa0757150:CDS | 25.0% |
| !!! | GAGTTTTTTTTCGATATTCT+TGG | - | chr5_2:11916413-11916432 | None:intergenic | 25.0% |
| !!! | GACTTACTTTTGAAGATTAT+TGG | - | chr5_2:11916546-11916565 | None:intergenic | 25.0% |
| ! | ATAATCTTCAAAAGTAAGTC+AGG | + | chr5_2:11916546-11916565 | Msa0757150:intron | 25.0% |
| !!! | TTTTTTTTATAGGCCTAAGA+CGG | + | chr5_2:11916657-11916676 | Msa0757150:intron | 25.0% |
| ! | AAATCATATGTCAACAATCA+AGG | - | chr5_2:11916701-11916720 | None:intergenic | 25.0% |
| ! | ATATGATTTATTGCAGAGTA+TGG | + | chr5_2:11916712-11916731 | Msa0757150:intron | 25.0% |
| !!! | CGTTTTATTGTTATATCGAT+AGG | + | chr5_2:11916812-11916831 | Msa0757150:CDS | 25.0% |
| ! | TCATTGAAACAATCTAGTAT+TGG | - | chr5_2:11916929-11916948 | None:intergenic | 25.0% |
| !! | CTTAGTTGATATTTGAATTC+CGG | - | chr5_2:11917147-11917166 | None:intergenic | 25.0% |
| !! | CAATTTTGTCTATTGAGTAT+TGG | + | chr5_2:11917248-11917267 | Msa0757150:intron | 25.0% |
| ! | TTATTTGCAGAAGAAATCTT+GGG | - | chr5_2:11917299-11917318 | None:intergenic | 25.0% |
| ! | TTTATTTGCAGAAGAAATCT+TGG | - | chr5_2:11917300-11917319 | None:intergenic | 25.0% |
| ! | AAAAACTCATTTGTCAACTT+AGG | - | chr5_2:11917502-11917521 | None:intergenic | 25.0% |
| ! | CAAACAAAATAAAATCTAGC+TGG | - | chr5_2:11917537-11917556 | None:intergenic | 25.0% |
| ! | TTATAAGGACTAAAAGTTGA+AGG | - | chr5_2:11917964-11917983 | None:intergenic | 25.0% |
| !!! | AAGCTGATGAAATTTTTTAG+AGG | + | chr5_2:11918253-11918272 | Msa0757150:intron | 25.0% |
| !!! | AGCTGATGAAATTTTTTAGA+GGG | + | chr5_2:11918254-11918273 | Msa0757150:intron | 25.0% |
| ! | ATTATATATGTTTGCATTGC+AGG | + | chr5_2:11918402-11918421 | Msa0757150:intron | 25.0% |
| ATTACTTTACAGGAGATAGA+CGG | + | chr5_2:11915508-11915527 | Msa0757150:intron | 30.0% | |
| ATTTCTTTGGCAGCAAATAA+TGG | - | chr5_2:11915640-11915659 | None:intergenic | 30.0% | |
| ! | CTTTGCTGTGGAAAAATATT+TGG | - | chr5_2:11915688-11915707 | None:intergenic | 30.0% |
| ! | CAAATATTTTTCCACAGCAA+AGG | + | chr5_2:11915686-11915705 | Msa0757150:CDS | 30.0% |
| TTATACGCACACATATGATA+TGG | - | chr5_2:11915746-11915765 | None:intergenic | 30.0% | |
| AATACATGAAAATCTGGTTG+GGG | + | chr5_2:11915777-11915796 | Msa0757150:intron | 30.0% | |
| ! | AGTCTTTGTTGTGTTTATGA+GGG | - | chr5_2:11915879-11915898 | None:intergenic | 30.0% |
| ! | AAGTCTTTGTTGTGTTTATG+AGG | - | chr5_2:11915880-11915899 | None:intergenic | 30.0% |
| TAACAACGTTTGTCAAAGTT+TGG | - | chr5_2:11915976-11915995 | None:intergenic | 30.0% | |
| AGTTTCTGAACATCAAAAGA+TGG | - | chr5_2:11916001-11916020 | None:intergenic | 30.0% | |
| AATTAAAACTACCTGATAGG+AGG | - | chr5_2:11916041-11916060 | None:intergenic | 30.0% | |
| AGATATTTGCATAGCTACAT+CGG | + | chr5_2:11916261-11916280 | Msa0757150:CDS | 30.0% | |
| !!! | TTTTTTTGGAAATAGTGAGC+TGG | - | chr5_2:11916304-11916323 | None:intergenic | 30.0% |
| !!! | TCCCATGTTCATCTTTTTTT+TGG | - | chr5_2:11916318-11916337 | None:intergenic | 30.0% |
| AAAGAATACAACCTCATTGA+CGG | + | chr5_2:11916346-11916365 | Msa0757150:CDS | 30.0% | |
| TTACTAAATTTGTAAGGACC+AGG | + | chr5_2:11916514-11916533 | Msa0757150:intron | 30.0% | |
| TACTAAATTTGTAAGGACCA+GGG | + | chr5_2:11916515-11916534 | Msa0757150:intron | 30.0% | |
| !!! | TTTTTTTATAGGCCTAAGAC+GGG | + | chr5_2:11916658-11916677 | Msa0757150:intron | 30.0% |
| AAGTGACAAAGCATATCATA+AGG | + | chr5_2:11916747-11916766 | Msa0757150:CDS | 30.0% | |
| ATATCATAAGGAAACCAGAT+GGG | + | chr5_2:11916759-11916778 | Msa0757150:CDS | 30.0% | |
| !! | TTGACTTGGTTATTCAACAA+TGG | + | chr5_2:11916896-11916915 | Msa0757150:CDS | 30.0% |
| CTTAACTTACTTGAATTCTG+AGG | - | chr5_2:11917021-11917040 | None:intergenic | 30.0% | |
| AAGTAAGTTAAGCACATGTT+TGG | + | chr5_2:11917029-11917048 | Msa0757150:intron | 30.0% | |
| !!! | TTTTGTCTATTGAGTATTGG+TGG | + | chr5_2:11917251-11917270 | Msa0757150:intron | 30.0% |
| AAATTGTTACAAACTTACGG+TGG | + | chr5_2:11917661-11917680 | Msa0757150:intron | 30.0% | |
| AAACAGGAAGATACATTACA+GGG | + | chr5_2:11917692-11917711 | Msa0757150:intron | 30.0% | |
| TACACGAGTGAATTTAGATA+CGG | + | chr5_2:11917799-11917818 | Msa0757150:CDS | 30.0% | |
| ! | TTTGAAACAGTTCCAGATAA+AGG | + | chr5_2:11917827-11917846 | Msa0757150:CDS | 30.0% |
| !!! | AGCTTTTTTTCCCTTAGTTT+GGG | - | chr5_2:11918366-11918385 | None:intergenic | 30.0% |
| AGAACAGTGATGAAATTCAC+AGG | - | chr5_2:11915332-11915351 | None:intergenic | 35.0% | |
| ! | ATCACTGTTCTTAGCATTGA+TGG | + | chr5_2:11915341-11915360 | Msa0757150:CDS | 35.0% |
| AAACCTGAAGTTGAGATTCA+AGG | - | chr5_2:11915409-11915428 | None:intergenic | 35.0% | |
| GTAGAATGGCACAATTTCTT+TGG | - | chr5_2:11915653-11915672 | None:intergenic | 35.0% | |
| !! | AGGTCTGCCTGTTTAATTTT+TGG | + | chr5_2:11915706-11915725 | Msa0757150:intron | 35.0% |
| ! | GTCTTTGTTGTGTTTATGAG+GGG | - | chr5_2:11915878-11915897 | None:intergenic | 35.0% |
| AACACAACAAAGACTTTGAC+AGG | + | chr5_2:11915884-11915903 | Msa0757150:CDS | 35.0% | |
| TTGACAGGATCCAAGTATAA+TGG | + | chr5_2:11915899-11915918 | Msa0757150:CDS | 35.0% | |
| TGACAGGATCCAAGTATAAT+GGG | + | chr5_2:11915900-11915919 | Msa0757150:CDS | 35.0% | |
| ! | TCATATTTCTGATCAGCTTG+TGG | - | chr5_2:11915934-11915953 | None:intergenic | 35.0% |
| AGCTGATCAGAAATATGACA+AGG | + | chr5_2:11915936-11915955 | Msa0757150:CDS | 35.0% | |
| GCTGATCAGAAATATGACAA+GGG | + | chr5_2:11915937-11915956 | Msa0757150:CDS | 35.0% | |
| TGATAGGAGGAAAAAATGGT+AGG | - | chr5_2:11916028-11916047 | None:intergenic | 35.0% | |
| !!! | TACCATTTTTTCCTCCTATC+AGG | + | chr5_2:11916027-11916046 | Msa0757150:CDS | 35.0% |
| TACCTGATAGGAGGAAAAAA+TGG | - | chr5_2:11916032-11916051 | None:intergenic | 35.0% | |
| TAGTGAGCTGGTAAATAAGT+TGG | - | chr5_2:11916292-11916311 | None:intergenic | 35.0% | |
| CTAACAATCCGGTAAAATTC+TGG | + | chr5_2:11916380-11916399 | Msa0757150:intron | 35.0% | |
| !!! | TTTTTTATAGGCCTAAGACG+GGG | + | chr5_2:11916659-11916678 | Msa0757150:intron | 35.0% |
| CATATCATAAGGAAACCAGA+TGG | + | chr5_2:11916758-11916777 | Msa0757150:CDS | 35.0% | |
| ATTGTTATATCGATAGGGAC+AGG | + | chr5_2:11916818-11916837 | Msa0757150:CDS | 35.0% | |
| ATGCTAAGATGGTTGCTAAA+TGG | + | chr5_2:11916867-11916886 | Msa0757150:CDS | 35.0% | |
| TGCTAAGATGGTTGCTAAAT+GGG | + | chr5_2:11916868-11916887 | Msa0757150:CDS | 35.0% | |
| CAATGAAGCAAGCAATGATA+TGG | + | chr5_2:11916943-11916962 | Msa0757150:CDS | 35.0% | |
| GTAGTTGTCTTGAGATTGAA+GGG | - | chr5_2:11916999-11917018 | None:intergenic | 35.0% | |
| CTACGTATGTCATTGTGATT+TGG | - | chr5_2:11917062-11917081 | None:intergenic | 35.0% | |
| ACACACAACCCTTAAACAAA+TGG | + | chr5_2:11917432-11917451 | Msa0757150:intron | 35.0% | |
| ACCCTTAAACAAATGGATGA+AGG | + | chr5_2:11917439-11917458 | Msa0757150:intron | 35.0% | |
| CCCTTCATCCATTTGTTTAA+GGG | - | chr5_2:11917443-11917462 | None:intergenic | 35.0% | |
| CCCTTAAACAAATGGATGAA+GGG | + | chr5_2:11917440-11917459 | Msa0757150:intron | 35.0% | |
| TCCCTTCATCCATTTGTTTA+AGG | - | chr5_2:11917444-11917463 | None:intergenic | 35.0% | |
| ACAAATGGATGAAGGGAATT+TGG | + | chr5_2:11917447-11917466 | Msa0757150:intron | 35.0% | |
| GAAACAGGAAGATACATTAC+AGG | + | chr5_2:11917691-11917710 | Msa0757150:intron | 35.0% | |
| AACAGGAAGATACATTACAG+GGG | + | chr5_2:11917693-11917712 | Msa0757150:intron | 35.0% | |
| ACACGAGTGAATTTAGATAC+GGG | + | chr5_2:11917800-11917819 | Msa0757150:CDS | 35.0% | |
| TTTGCATTAGTCCCAAACTA+AGG | + | chr5_2:11918352-11918371 | Msa0757150:intron | 35.0% | |
| TTGCATTAGTCCCAAACTAA+GGG | + | chr5_2:11918353-11918372 | Msa0757150:intron | 35.0% | |
| !!! | GAGCTTTTTTTCCCTTAGTT+TGG | - | chr5_2:11918367-11918386 | None:intergenic | 35.0% |
| AAAAAGTCCATCCCACAAAA+TGG | + | chr5_2:11918458-11918477 | Msa0757150:CDS | 35.0% | |
| !! | ACTGTTCTTAGCATTGATGG+TGG | + | chr5_2:11915344-11915363 | Msa0757150:CDS | 40.0% |
| CTGAAGTTGAGATTCAAGGT+AGG | - | chr5_2:11915405-11915424 | None:intergenic | 40.0% | |
| CTACCTTGAATCTCAACTTC+AGG | + | chr5_2:11915403-11915422 | Msa0757150:CDS | 40.0% | |
| !! | CGGTTATTAGCCTTTGGATT+TGG | - | chr5_2:11915616-11915635 | None:intergenic | 40.0% |
| !! | AATGGACGGTTATTAGCCTT+TGG | - | chr5_2:11915622-11915641 | None:intergenic | 40.0% |
| ! | CTTTGGCAGCAAATAATGGA+CGG | - | chr5_2:11915636-11915655 | None:intergenic | 40.0% |
| !!! | GGCAAGTTTTGAAGGTAGAA+TGG | - | chr5_2:11915667-11915686 | None:intergenic | 40.0% |
| !!! | TAGTTTTTAGGATGGAACCC+TGG | - | chr5_2:11915820-11915839 | None:intergenic | 40.0% |
| GACAGGATCCAAGTATAATG+GGG | + | chr5_2:11915901-11915920 | Msa0757150:CDS | 40.0% | |
| GAGATACTCCCCATTATACT+TGG | - | chr5_2:11915912-11915931 | None:intergenic | 40.0% | |
| ! | GAGAGTAGTACATCTAAAGC+TGG | - | chr5_2:11916241-11916260 | None:intergenic | 40.0% |
| ! | AGAAGTGGGGATAATGGTAT+AGG | + | chr5_2:11916782-11916801 | Msa0757150:CDS | 40.0% |
| ! | GAAGTGGGGATAATGGTATA+GGG | + | chr5_2:11916783-11916802 | Msa0757150:CDS | 40.0% |
| GCTAAGATGGTTGCTAAATG+GGG | + | chr5_2:11916869-11916888 | Msa0757150:CDS | 40.0% | |
| CAGTAAAAAGGACAGCGTTA+TGG | - | chr5_2:11916976-11916995 | None:intergenic | 40.0% | |
| GAGATTGAAGGGCAGTAAAA+AGG | - | chr5_2:11916988-11917007 | None:intergenic | 40.0% | |
| GGTAGTTGTCTTGAGATTGA+AGG | - | chr5_2:11917000-11917019 | None:intergenic | 40.0% | |
| TGCGATCATGTCAAACTTAC+CGG | + | chr5_2:11917125-11917144 | Msa0757150:intron | 40.0% | |
| !! | TCTATTGAGTATTGGTGGTC+TGG | + | chr5_2:11917256-11917275 | Msa0757150:intron | 40.0% |
| ATCTTGGGTTCCAAGAAAGA+TGG | - | chr5_2:11917284-11917303 | None:intergenic | 40.0% | |
| !! | TACGGTGGTTTGTTTGAAAC+AGG | + | chr5_2:11917676-11917695 | Msa0757150:intron | 40.0% |
| ACAGGAAGATACATTACAGG+GGG | + | chr5_2:11917694-11917713 | Msa0757150:intron | 40.0% | |
| !!! | CCTTTTGAGTTCTTCCTCAA+TGG | - | chr5_2:11917855-11917874 | None:intergenic | 40.0% |
| CCATTGAGGAAGAACTCAAA+AGG | + | chr5_2:11917852-11917871 | Msa0757150:CDS | 40.0% | |
| !!! | TTACTTGCCATTTTGTGGGA+TGG | - | chr5_2:11918468-11918487 | None:intergenic | 40.0% |
| !! | GTTCTTAGCATTGATGGTGG+AGG | + | chr5_2:11915347-11915366 | Msa0757150:CDS | 45.0% |
| AGGTAGGCAAGAATAACACC+AGG | - | chr5_2:11915389-11915408 | None:intergenic | 45.0% | |
| !! | TGGATTTGGTGCTGCTAACA+TGG | - | chr5_2:11915602-11915621 | None:intergenic | 45.0% |
| GTTAGCAGCACCAAATCCAA+AGG | + | chr5_2:11915603-11915622 | Msa0757150:CDS | 45.0% | |
| ACATGAAAATCTGGTTGGGG+TGG | + | chr5_2:11915780-11915799 | Msa0757150:intron | 45.0% | |
| CATGAAAATCTGGTTGGGGT+GGG | + | chr5_2:11915781-11915800 | Msa0757150:intron | 45.0% | |
| ATGAAAATCTGGTTGGGGTG+GGG | + | chr5_2:11915782-11915801 | Msa0757150:intron | 45.0% | |
| GAATACAACCTCATTGACGG+TGG | + | chr5_2:11916349-11916368 | Msa0757150:CDS | 45.0% | |
| !! | TCCGGTAAAATTCTGGCTCA+AGG | + | chr5_2:11916387-11916406 | Msa0757150:intron | 45.0% |
| ! | GCCTTGAGCCAGAATTTTAC+CGG | - | chr5_2:11916391-11916410 | None:intergenic | 45.0% |
| GAAGATTATTGGATCGACCC+TGG | - | chr5_2:11916535-11916554 | None:intergenic | 45.0% | |
| GCGCAAGTACAATGCTAAGA+TGG | + | chr5_2:11916856-11916875 | Msa0757150:CDS | 45.0% | |
| !! | CTAAATGGGGTGCATTGACT+TGG | + | chr5_2:11916882-11916901 | Msa0757150:CDS | 45.0% |
| TGGTCTGGATCCATCTTTCT+TGG | + | chr5_2:11917271-11917290 | Msa0757150:intron | 45.0% | |
| !! | TCCAGATAAAGGCACCATTG+AGG | + | chr5_2:11917838-11917857 | Msa0757150:CDS | 45.0% |
| TCCTCAATGGTGCCTTTATC+TGG | - | chr5_2:11917842-11917861 | None:intergenic | 45.0% | |
| TGTTTGCATTGCAGGTTTGC+TGG | + | chr5_2:11918410-11918429 | Msa0757150:intron | 45.0% | |
| !! | CAGGTTTGCTGGTTTACTCT+CGG | + | chr5_2:11918421-11918440 | Msa0757150:intron | 45.0% |
| !!! | TAAAAGATAATTTTTTTTAT+AGG | + | chr5_2:11916647-11916666 | Msa0757150:intron | 5.0% |
| !!! | AATTACTTTTATTTTATTTT+AGG | + | chr5_2:11917876-11917895 | Msa0757150:intron | 5.0% |
| !!! | ATTACTTTTATTTTATTTTA+GGG | + | chr5_2:11917877-11917896 | Msa0757150:intron | 5.0% |
| !!! | ATGAATTTTTATATTTTTTA+AGG | - | chr5_2:11918070-11918089 | None:intergenic | 5.0% |
| !!! | TTAAAAAATTTTAATTTTTC+TGG | + | chr5_2:11918107-11918126 | Msa0757150:intron | 5.0% |
| !!! | TAAAAAATTTTAATTTTTCT+GGG | + | chr5_2:11918108-11918127 | Msa0757150:intron | 5.0% |
| !! | ATAAGTTATTATAAAATAAA+TGG | - | chr5_2:11918328-11918347 | None:intergenic | 5.0% |
| TTTACAGGAGATAGACGGCG+AGG | + | chr5_2:11915513-11915532 | Msa0757150:intron | 50.0% | |
| GTAATTGCCGGGACAAGTAC+AGG | + | chr5_2:11915562-11915581 | Msa0757150:CDS | 50.0% | |
| AAACAGGCAGACCTTTGCTG+TGG | - | chr5_2:11915700-11915719 | None:intergenic | 50.0% | |
| TGAAAATCTGGTTGGGGTGG+GGG | + | chr5_2:11915783-11915802 | Msa0757150:intron | 50.0% | |
| TGGGGGATTTAAGGAGTCCA+GGG | + | chr5_2:11915800-11915819 | Msa0757150:intron | 50.0% | |
| TGGTGTGGCTGCTAACAATC+CGG | + | chr5_2:11916369-11916388 | Msa0757150:CDS | 50.0% | |
| ACCACTAAAGTCCCCGTCTT+AGG | - | chr5_2:11916673-11916692 | None:intergenic | 50.0% | |
| AGGAAACCAGATGGGAGAAG+TGG | + | chr5_2:11916767-11916786 | Msa0757150:CDS | 50.0% | |
| GGAAACCAGATGGGAGAAGT+GGG | + | chr5_2:11916768-11916787 | Msa0757150:CDS | 50.0% | |
| GAAACCAGATGGGAGAAGTG+GGG | + | chr5_2:11916769-11916788 | Msa0757150:CDS | 50.0% | |
| TTATCCCCACTTCTCCCATC+TGG | - | chr5_2:11916776-11916795 | None:intergenic | 50.0% | |
| GATGGGAGAAGTGGGGATAA+TGG | + | chr5_2:11916776-11916795 | Msa0757150:CDS | 50.0% | |
| AATTGCACGCACGCTTGTGT+AGG | - | chr5_2:11917479-11917498 | None:intergenic | 50.0% | |
| !! | ATTGATGGTGGAGGCGTCAG+AGG | + | chr5_2:11915356-11915375 | Msa0757150:CDS | 55.0% |
| GGCGTCAGAGGAATCATTCC+TGG | + | chr5_2:11915368-11915387 | Msa0757150:CDS | 55.0% | |
| AGATAGACGGCGAGGATGCA+AGG | + | chr5_2:11915521-11915540 | Msa0757150:CDS | 55.0% | |
| ATTGCCGGGACAAGTACAGG+TGG | + | chr5_2:11915565-11915584 | Msa0757150:CDS | 55.0% | |
| GAGACCACCTGTACTTGTCC+CGG | - | chr5_2:11915572-11915591 | None:intergenic | 55.0% | |
| TGGTTGGGGTGGGGGATTTA+AGG | + | chr5_2:11915791-11915810 | Msa0757150:intron | 55.0% | |
| GTGGGGGATTTAAGGAGTCC+AGG | + | chr5_2:11915799-11915818 | Msa0757150:intron | 55.0% | |
| CAACCTCATTGACGGTGGTG+TGG | + | chr5_2:11916354-11916373 | Msa0757150:CDS | 55.0% | |
| GCCTAAGACGGGGACTTTAG+TGG | + | chr5_2:11916669-11916688 | Msa0757150:intron | 55.0% | |
| CAGCCACACCACCGTCAATG+AGG | - | chr5_2:11916360-11916379 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 11915314 | 11918487 | 11915314 | ID=Msa0757150;Name=Msa0757150 |
| chr5_2 | mRNA | 11915314 | 11918487 | 11915314 | ID=Msa0757150-mRNA-1;Parent=Msa0757150;Name=Msa0757150-mRNA-1;_AED=0.16;_eAED=0.16;_QI=0|0|0|0.85|1|1|7|0|397 |
| chr5_2 | exon | 11915314 | 11915424 | 11915314 | ID=Msa0757150-mRNA-1:exon:5323;Parent=Msa0757150-mRNA-1 |
| chr5_2 | exon | 11915520 | 11915707 | 11915520 | ID=Msa0757150-mRNA-1:exon:5324;Parent=Msa0757150-mRNA-1 |
| chr5_2 | exon | 11915862 | 11916048 | 11915862 | ID=Msa0757150-mRNA-1:exon:5325;Parent=Msa0757150-mRNA-1 |
| chr5_2 | exon | 11916226 | 11916390 | 11916226 | ID=Msa0757150-mRNA-1:exon:5326;Parent=Msa0757150-mRNA-1 |
| chr5_2 | exon | 11916728 | 11917030 | 11916728 | ID=Msa0757150-mRNA-1:exon:5327;Parent=Msa0757150-mRNA-1 |
| chr5_2 | exon | 11917698 | 11917873 | 11917698 | ID=Msa0757150-mRNA-1:exon:5328;Parent=Msa0757150-mRNA-1 |
| chr5_2 | exon | 11918424 | 11918487 | 11918424 | ID=Msa0757150-mRNA-1:exon:5329;Parent=Msa0757150-mRNA-1 |
| chr5_2 | CDS | 11915314 | 11915424 | 11915314 | ID=Msa0757150-mRNA-1:cds;Parent=Msa0757150-mRNA-1 |
| chr5_2 | CDS | 11915520 | 11915707 | 11915520 | ID=Msa0757150-mRNA-1:cds;Parent=Msa0757150-mRNA-1 |
| chr5_2 | CDS | 11915862 | 11916048 | 11915862 | ID=Msa0757150-mRNA-1:cds;Parent=Msa0757150-mRNA-1 |
| chr5_2 | CDS | 11916226 | 11916390 | 11916226 | ID=Msa0757150-mRNA-1:cds;Parent=Msa0757150-mRNA-1 |
| chr5_2 | CDS | 11916728 | 11917030 | 11916728 | ID=Msa0757150-mRNA-1:cds;Parent=Msa0757150-mRNA-1 |
| chr5_2 | CDS | 11917698 | 11917873 | 11917698 | ID=Msa0757150-mRNA-1:cds;Parent=Msa0757150-mRNA-1 |
| chr5_2 | CDS | 11918424 | 11918487 | 11918424 | ID=Msa0757150-mRNA-1:cds;Parent=Msa0757150-mRNA-1 |
| Gene Sequence |
| Protein sequence |
