Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0715220 | XP_003611772.1 | 96.222 | 397 | 14 | 1 | 1 | 397 | 1 | 396 | 0.0 | 779 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0715220 | sp|O23179|PLP1_ARATH | 56.136 | 383 | 165 | 2 | 8 | 390 | 17 | 396 | 3.64e-158 | 454 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0715220 | G7K805 | 96.222 | 397 | 14 | 1 | 1 | 397 | 1 | 396 | 0.0 | 779 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0010150 | Msa0715220 | 0.815052 | 1.126202e-51 | -8.615850e-47 |
| Msa0011010 | Msa0715220 | 0.803104 | 4.086928e-49 | -8.615850e-47 |
| Msa0013270 | Msa0715220 | 0.822734 | 2.022158e-53 | -8.615850e-47 |
| Msa0014590 | Msa0715220 | 0.817910 | 2.580704e-52 | -8.615850e-47 |
| Msa0024650 | Msa0715220 | 0.811428 | 7.035801e-51 | -8.615850e-47 |
| Msa0025570 | Msa0715220 | 0.802537 | 5.352431e-49 | -8.615850e-47 |
| Msa0027860 | Msa0715220 | 0.831515 | 1.598173e-55 | -8.615850e-47 |
| Msa0040210 | Msa0715220 | 0.812260 | 4.637358e-51 | -8.615850e-47 |
| Msa0059880 | Msa0715220 | 0.801567 | 8.470943e-49 | -8.615850e-47 |
| Msa0062190 | Msa0715220 | 0.821867 | 3.212826e-53 | -8.615850e-47 |
| Msa0063540 | Msa0715220 | 0.846134 | 2.628890e-59 | -8.615850e-47 |
| Msa0073110 | Msa0715220 | 0.811593 | 6.477460e-51 | -8.615850e-47 |
| Msa0074620 | Msa0715220 | 0.824030 | 1.006737e-53 | -8.615850e-47 |
| Msa0075560 | Msa0715220 | 0.811234 | 7.750436e-51 | -8.615850e-47 |
| Msa0096590 | Msa0715220 | 0.816286 | 5.981942e-52 | -8.615850e-47 |
| Msa0106540 | Msa0715220 | 0.831917 | 1.271831e-55 | -8.615850e-47 |
| Msa0108350 | Msa0715220 | 0.823341 | 1.458965e-53 | -8.615850e-47 |
| Msa0609460 | Msa0715220 | 0.802481 | 5.495685e-49 | -8.615850e-47 |
| Msa0616300 | Msa0715220 | 0.810282 | 1.245446e-50 | -8.615850e-47 |
| Msa0628140 | Msa0715220 | 0.809788 | 1.591273e-50 | -8.615850e-47 |
| Msa0631700 | Msa0715220 | 0.806836 | 6.779161e-50 | -8.615850e-47 |
| Msa0633940 | Msa0715220 | 0.826065 | 3.328513e-54 | -8.615850e-47 |
| Msa0633970 | Msa0715220 | 0.828428 | 9.042508e-55 | -8.615850e-47 |
| Msa0634290 | Msa0715220 | 0.802006 | 6.885193e-49 | -8.615850e-47 |
| Msa0643190 | Msa0715220 | 0.800214 | 1.600893e-48 | -8.615850e-47 |
| Msa0643840 | Msa0715220 | 0.814321 | 1.635349e-51 | -8.615850e-47 |
| Msa0647300 | Msa0715220 | 0.803657 | 3.140413e-49 | -8.615850e-47 |
| Msa0655800 | Msa0715220 | 0.807683 | 4.485048e-50 | -8.615850e-47 |
| Msa0670360 | Msa0715220 | 0.833619 | 4.805503e-56 | -8.615850e-47 |
| Msa0685080 | Msa0715220 | 0.840077 | 1.080407e-57 | -8.615850e-47 |
| Msa0686830 | Msa0715220 | 0.801938 | 7.110232e-49 | -8.615850e-47 |
| Msa0694320 | Msa0715220 | 0.804841 | 1.780012e-49 | -8.615850e-47 |
| Msa0699170 | Msa0715220 | 0.809348 | 1.978581e-50 | -8.615850e-47 |
| Msa0715210 | Msa0715220 | 0.812415 | 4.289425e-51 | -8.615850e-47 |
| Msa0715220 | Msa0733560 | 0.816956 | 4.231928e-52 | -8.615850e-47 |
| Msa0715220 | Msa0739720 | 0.812595 | 3.917491e-51 | -8.615850e-47 |
| Msa0715220 | Msa0741360 | 0.816292 | 5.961577e-52 | -8.615850e-47 |
| Msa0715220 | Msa0757120 | 0.849966 | 2.302732e-60 | -8.615850e-47 |
| Msa0715220 | Msa0757150 | 0.807219 | 5.623892e-50 | -8.615850e-47 |
| Msa0715220 | Msa0768670 | 0.814733 | 1.325530e-51 | -8.615850e-47 |
| Msa0715220 | Msa0777070 | 0.816154 | 6.402449e-52 | -8.615850e-47 |
| Msa0715220 | Msa0777250 | 0.813494 | 2.488601e-51 | -8.615850e-47 |
| Msa0715220 | Msa0798150 | 0.873231 | 1.726050e-67 | -8.615850e-47 |
| Msa0715220 | Msa0812220 | 0.812606 | 3.894903e-51 | -8.615850e-47 |
| Msa0715220 | Msa0814160 | 0.821367 | 4.192628e-53 | -8.615850e-47 |
| Msa0715220 | Msa0814230 | 0.820954 | 5.220064e-53 | -8.615850e-47 |
| Msa0715220 | Msa0822400 | 0.814758 | 1.309048e-51 | -8.615850e-47 |
| Msa0715220 | Msa0822410 | 0.806082 | 9.774972e-50 | -8.615850e-47 |
| Msa0715220 | Msa0836250 | 0.935435 | 8.515023e-97 | -8.615850e-47 |
| Msa0715220 | Msa0854840 | 0.811994 | 5.300106e-51 | -8.615850e-47 |
| Msa0715220 | Msa0861730 | 0.826734 | 2.305674e-54 | -8.615850e-47 |
| Msa0715220 | Msa0867080 | 0.808971 | 2.383161e-50 | -8.615850e-47 |
| Msa0715220 | Msa0893840 | 0.830473 | 2.878958e-55 | -8.615850e-47 |
| Msa0715220 | Msa0896920 | 0.846998 | 1.526899e-59 | -8.615850e-47 |
| Msa0715220 | Msa0896950 | 0.819518 | 1.113783e-52 | -8.615850e-47 |
| Msa0715220 | Msa0913550 | 0.831775 | 1.378953e-55 | -8.615850e-47 |
| Msa0715220 | Msa0921180 | 0.820199 | 7.780460e-53 | -8.615850e-47 |
| Msa0715220 | Msa0933610 | 0.811858 | 5.673401e-51 | -8.615850e-47 |
| Msa0715220 | Msa0946010 | 0.847347 | 1.224980e-59 | -8.615850e-47 |
| Msa0715220 | Msa0951150 | 0.835354 | 1.761811e-56 | -8.615850e-47 |
| Msa0715220 | Msa0970790 | 0.804694 | 1.910266e-49 | -8.615850e-47 |
| Msa0715220 | Msa0975950 | 0.803237 | 3.836541e-49 | -8.615850e-47 |
| Msa0715220 | Msa0987640 | 0.837322 | 5.565406e-57 | -8.615850e-47 |
| Msa0715220 | Msa0996980 | 0.823373 | 1.434404e-53 | -8.615850e-47 |
| Msa0715220 | Msa0996990 | 0.808246 | 3.404057e-50 | -8.615850e-47 |
| Msa0715220 | Msa0998780 | 0.826005 | 3.438779e-54 | -8.615850e-47 |
| Msa0715220 | Msa1006030 | 0.827677 | 1.371018e-54 | -8.615850e-47 |
| Msa0715220 | Msa1006170 | 0.846882 | 1.642464e-59 | -8.615850e-47 |
| Msa0715220 | Msa1018590 | 0.811566 | 6.566690e-51 | -8.615850e-47 |
| Msa0715220 | Msa1022490 | 0.833244 | 5.961029e-56 | -8.615850e-47 |
| Msa0715220 | Msa1022510 | 0.848203 | 7.120346e-60 | -8.615850e-47 |
| Msa0715220 | Msa1024420 | 0.806640 | 7.458362e-50 | -8.615850e-47 |
| Msa0715220 | Msa1024480 | 0.812772 | 3.584043e-51 | -8.615850e-47 |
| Msa0715220 | Msa1029860 | 0.814346 | 1.614549e-51 | -8.615850e-47 |
| Msa0715220 | Msa1030320 | 0.824524 | 7.705586e-54 | -8.615850e-47 |
| Msa0715220 | Msa1041910 | 0.835317 | 1.800567e-56 | -8.615850e-47 |
| Msa0715220 | Msa1048350 | 0.811185 | 7.942569e-51 | -8.615850e-47 |
| Msa0715220 | Msa1048400 | 0.809403 | 1.925403e-50 | -8.615850e-47 |
| Msa0715220 | Msa1061670 | 0.852072 | 5.868532e-61 | -8.615850e-47 |
| Msa0715220 | Msa1063210 | 0.801724 | 7.865667e-49 | -8.615850e-47 |
| Msa0715220 | Msa1064940 | 0.815653 | 8.281290e-52 | -8.615850e-47 |
| Msa0715220 | Msa1066150 | 0.803220 | 3.868443e-49 | -8.615850e-47 |
| Msa0715220 | Msa1068730 | 0.800870 | 1.176835e-48 | -8.615850e-47 |
| Msa0715220 | Msa1075030 | 0.817141 | 3.845614e-52 | -8.615850e-47 |
| Msa0715220 | Msa1076830 | 0.801691 | 7.988592e-49 | -8.615850e-47 |
| Msa0715220 | Msa1087370 | 0.802113 | 6.545418e-49 | -8.615850e-47 |
| Msa0715220 | Msa1103450 | 0.805114 | 1.560690e-49 | -8.615850e-47 |
| Msa0715220 | Msa1104960 | 0.810052 | 1.396108e-50 | -8.615850e-47 |
| Msa0715220 | Msa1106680 | 0.872420 | 3.223675e-67 | -8.615850e-47 |
| Msa0715220 | Msa1106960 | 0.849085 | 4.054704e-60 | -8.615850e-47 |
| Msa0715220 | Msa1108560 | 0.827915 | 1.201794e-54 | -8.615850e-47 |
| Msa0715220 | Msa1108610 | 0.805854 | 1.091689e-49 | -8.615850e-47 |
| Msa0715220 | Msa1109880 | 0.811444 | 6.980396e-51 | -8.615850e-47 |
| Msa0715220 | Msa1115900 | 0.811803 | 5.831626e-51 | -8.615850e-47 |
| Msa0715220 | Msa1138110 | 0.802207 | 6.258446e-49 | -8.615850e-47 |
| Msa0715220 | Msa1147030 | 0.836261 | 1.038117e-56 | -8.615850e-47 |
| Msa0715220 | Msa1148210 | 0.830527 | 2.793480e-55 | -8.615850e-47 |
| Msa0715220 | Msa1167960 | 0.836352 | 9.841420e-57 | -8.615850e-47 |
| Msa0715220 | Msa1169760 | 0.813476 | 2.510241e-51 | -8.615850e-47 |
| Msa0715220 | Msa1170340 | 0.831526 | 1.587986e-55 | -8.615850e-47 |
| Msa0715220 | Msa1174280 | 0.806985 | 6.304756e-50 | -8.615850e-47 |
| Msa0715220 | Msa1181090 | 0.855284 | 6.994754e-62 | -8.615850e-47 |
| Msa0715220 | Msa1186430 | 0.800063 | 1.718366e-48 | -8.615850e-47 |
| Msa0715220 | Msa1197910 | 0.824568 | 7.523498e-54 | -8.615850e-47 |
| Msa0715220 | Msa1223990 | 0.803290 | 3.741632e-49 | -8.615850e-47 |
| Msa0715220 | Msa1225850 | 0.814690 | 1.355201e-51 | -8.615850e-47 |
| Msa0715220 | Msa1225890 | 0.801110 | 1.051166e-48 | -8.615850e-47 |
| Msa0715220 | Msa1231720 | 0.811689 | 6.174742e-51 | -8.615850e-47 |
| Msa0715220 | Msa1233640 | 0.808840 | 2.540837e-50 | -8.615850e-47 |
| Msa0715220 | Msa1236680 | 0.827582 | 1.444550e-54 | -8.615850e-47 |
| Msa0715220 | Msa1263110 | 0.808451 | 3.077691e-50 | -8.615850e-47 |
| Msa0715220 | Msa1294020 | 0.816978 | 4.185140e-52 | -8.615850e-47 |
| Msa0715220 | Msa1297850 | 0.805738 | 1.154943e-49 | -8.615850e-47 |
| Msa0715220 | Msa1298090 | 0.814112 | 1.818111e-51 | -8.615850e-47 |
| Msa0715220 | Msa1300610 | 0.811049 | 8.502410e-51 | -8.615850e-47 |
| Msa0715220 | Msa1319010 | 0.807217 | 5.630990e-50 | -8.615850e-47 |
| Msa0715220 | Msa1322500 | 0.804957 | 1.682877e-49 | -8.615850e-47 |
| Msa0715220 | Msa1329740 | 0.816209 | 6.220781e-52 | -8.615850e-47 |
| Msa0715220 | Msa1355340 | 0.817902 | 2.590987e-52 | -8.615850e-47 |
| Msa0715220 | Msa1357860 | 0.800719 | 1.263346e-48 | -8.615850e-47 |
| Msa0715220 | Msa1368420 | 0.802413 | 5.678124e-49 | -8.615850e-47 |
| Msa0715220 | Msa1376070 | 0.805688 | 1.183267e-49 | -8.615850e-47 |
| Msa0715220 | Msa1383220 | 0.801669 | 8.075481e-49 | -8.615850e-47 |
| Msa0715220 | Msa1405830 | 0.831766 | 1.385911e-55 | -8.615850e-47 |
| Msa0715220 | Msa1406840 | 0.827982 | 1.157990e-54 | -8.615850e-47 |
| Msa0715220 | Msa1411550 | 0.839687 | 1.365069e-57 | -8.615850e-47 |
| Msa0715220 | Msa1421130 | 0.805009 | 1.641941e-49 | -8.615850e-47 |
| Msa0715220 | Msa1429550 | 0.803781 | 2.959071e-49 | -8.615850e-47 |
| Msa0715220 | Msa1431160 | 0.834826 | 2.394663e-56 | -8.615850e-47 |
| Msa0715220 | Msa1445900 | 0.838945 | 2.127451e-57 | -8.615850e-47 |
| Msa0715220 | Msa1456600 | 0.804740 | 1.868368e-49 | -8.615850e-47 |
| Msa0715220 | Msa1459610 | 0.849393 | 3.329330e-60 | -8.615850e-47 |
| Msa0123530 | Msa0715220 | 0.819466 | 1.144405e-52 | -8.615850e-47 |
| Msa0140270 | Msa0715220 | 0.809763 | 1.611034e-50 | -8.615850e-47 |
| Msa0142560 | Msa0715220 | 0.810393 | 1.178514e-50 | -8.615850e-47 |
| Msa0150910 | Msa0715220 | 0.806944 | 6.430891e-50 | -8.615850e-47 |
| Msa0150920 | Msa0715220 | 0.828101 | 1.083944e-54 | -8.615850e-47 |
| Msa0154460 | Msa0715220 | 0.821023 | 5.032749e-53 | -8.615850e-47 |
| Msa0163340 | Msa0715220 | 0.809852 | 1.541414e-50 | -8.615850e-47 |
| Msa0168010 | Msa0715220 | 0.811659 | 6.267212e-51 | -8.615850e-47 |
| Msa0170990 | Msa0715220 | 0.824546 | 7.613469e-54 | -8.615850e-47 |
| Msa0190670 | Msa0715220 | 0.809357 | 1.969451e-50 | -8.615850e-47 |
| Msa0195580 | Msa0715220 | 0.829810 | 4.178812e-55 | -8.615850e-47 |
| Msa0209060 | Msa0715220 | 0.861949 | 7.160455e-64 | -8.615850e-47 |
| Msa0237380 | Msa0715220 | 0.814615 | 1.407664e-51 | -8.615850e-47 |
| Msa0366510 | Msa0715220 | 0.846878 | 1.647334e-59 | -8.615850e-47 |
| Msa0369990 | Msa0715220 | 0.801746 | 7.786154e-49 | -8.615850e-47 |
| Msa0374040 | Msa0715220 | 0.832743 | 7.939970e-56 | -8.615850e-47 |
| Msa0386910 | Msa0715220 | 0.808204 | 3.474826e-50 | -8.615850e-47 |
| Msa0391270 | Msa0715220 | 0.828128 | 1.068104e-54 | -8.615850e-47 |
| Msa0396790 | Msa0715220 | 0.800599 | 1.336212e-48 | -8.615850e-47 |
| Msa0396860 | Msa0715220 | 0.811014 | 8.652340e-51 | -8.615850e-47 |
| Msa0414480 | Msa0715220 | 0.838616 | 2.586399e-57 | -8.615850e-47 |
| Msa0418160 | Msa0715220 | 0.820903 | 5.363914e-53 | -8.615850e-47 |
| Msa0418230 | Msa0715220 | 0.812909 | 3.344155e-51 | -8.615850e-47 |
| Msa0423200 | Msa0715220 | 0.805036 | 1.620376e-49 | -8.615850e-47 |
| Msa0423220 | Msa0715220 | 0.816951 | 4.243043e-52 | -8.615850e-47 |
| Msa0439370 | Msa0715220 | 0.800304 | 1.534733e-48 | -8.615850e-47 |
| Msa0444400 | Msa0715220 | 0.807117 | 5.912851e-50 | -8.615850e-47 |
| Msa0454770 | Msa0715220 | 0.806226 | 9.118883e-50 | -8.615850e-47 |
| Msa0464310 | Msa0715220 | 0.822657 | 2.106372e-53 | -8.615850e-47 |
| Msa0464620 | Msa0715220 | 0.813448 | 2.546604e-51 | -8.615850e-47 |
| Msa0253450 | Msa0715220 | 0.809353 | 1.973241e-50 | -8.615850e-47 |
| Msa0272210 | Msa0715220 | 0.803693 | 3.086560e-49 | -8.615850e-47 |
| Msa0274250 | Msa0715220 | 0.807453 | 5.017027e-50 | -8.615850e-47 |
| Msa0278460 | Msa0715220 | 0.801151 | 1.030956e-48 | -8.615850e-47 |
| Msa0281190 | Msa0715220 | 0.802094 | 6.603340e-49 | -8.615850e-47 |
| Msa0287630 | Msa0715220 | 0.805455 | 1.324165e-49 | -8.615850e-47 |
| Msa0288540 | Msa0715220 | 0.868611 | 5.739651e-66 | -8.615850e-47 |
| Msa0326770 | Msa0715220 | 0.857893 | 1.196524e-62 | -8.615850e-47 |
| Msa0328090 | Msa0715220 | 0.815126 | 1.084521e-51 | -8.615850e-47 |
| Msa0335340 | Msa0715220 | 0.803919 | 2.770490e-49 | -8.615850e-47 |
| Msa0348370 | Msa0715220 | 0.809142 | 2.190232e-50 | -8.615850e-47 |
| Msa0349910 | Msa0715220 | 0.822588 | 2.185506e-53 | -8.615850e-47 |
| Msa0515130 | Msa0715220 | 0.805589 | 1.240767e-49 | -8.615850e-47 |
| Msa0515150 | Msa0715220 | 0.831098 | 2.023540e-55 | -8.615850e-47 |
| Msa0523720 | Msa0715220 | 0.815180 | 1.054907e-51 | -8.615850e-47 |
| Msa0530990 | Msa0715220 | 0.803089 | 4.117078e-49 | -8.615850e-47 |
| Msa0535570 | Msa0715220 | 0.826423 | 2.734712e-54 | -8.615850e-47 |
| Msa0538440 | Msa0715220 | 0.804897 | 1.732268e-49 | -8.615850e-47 |
| Msa0538520 | Msa0715220 | 0.804611 | 1.987512e-49 | -8.615850e-47 |
| Msa0543740 | Msa0715220 | 0.817174 | 3.780670e-52 | -8.615850e-47 |
| Msa0548790 | Msa0715220 | 0.806850 | 6.731164e-50 | -8.615850e-47 |
| Msa0554660 | Msa0715220 | 0.808421 | 3.123271e-50 | -8.615850e-47 |
| Msa0555920 | Msa0715220 | 0.801411 | 9.117638e-49 | -8.615850e-47 |
| Msa0580100 | Msa0715220 | 0.811246 | 7.706043e-51 | -8.615850e-47 |
| Msa0583390 | Msa0715220 | 0.802526 | 5.380289e-49 | -8.615850e-47 |
| Msa0587870 | Msa0715220 | 0.805666 | 1.195539e-49 | -8.615850e-47 |
| Msa0591490 | Msa0715220 | 0.833877 | 4.142031e-56 | -8.615850e-47 |
| Msa0593870 | Msa0715220 | 0.829644 | 4.586141e-55 | -8.615850e-47 |
| Msa0594630 | Msa0715220 | 0.837504 | 4.998966e-57 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0715220 | MtrunA17_Chr5g0402451 | 96.222 | 397 | 14 | 1 | 1 | 397 | 1 | 396 | 0.0 | 779 |
| Msa0715220 | MtrunA17_Chr5g0402441 | 89.340 | 394 | 38 | 3 | 4 | 397 | 10 | 399 | 0.0 | 710 |
| Msa0715220 | MtrunA17_Chr1g0153781 | 55.330 | 394 | 170 | 3 | 1 | 390 | 9 | 400 | 7.45e-157 | 448 |
| Msa0715220 | MtrunA17_Chr3g0133681 | 55.614 | 383 | 167 | 2 | 8 | 390 | 18 | 397 | 2.27e-146 | 421 |
| Msa0715220 | MtrunA17_Chr3g0133691 | 55.614 | 383 | 167 | 2 | 8 | 390 | 18 | 397 | 2.33e-146 | 421 |
| Msa0715220 | MtrunA17_Chr8g0335651 | 44.072 | 388 | 185 | 8 | 8 | 392 | 31 | 389 | 1.01e-84 | 264 |
| Msa0715220 | MtrunA17_Chr8g0335581 | 39.286 | 392 | 213 | 10 | 8 | 392 | 19 | 392 | 1.34e-77 | 245 |
| Msa0715220 | MtrunA17_Chr8g0335611 | 38.903 | 383 | 214 | 8 | 10 | 389 | 32 | 397 | 3.18e-77 | 245 |
| Msa0715220 | MtrunA17_Chr8g0335621 | 38.579 | 394 | 219 | 9 | 10 | 397 | 63 | 439 | 4.40e-77 | 245 |
| Msa0715220 | MtrunA17_Chr8g0335631 | 40.506 | 395 | 210 | 8 | 8 | 397 | 30 | 404 | 5.05e-72 | 231 |
| Msa0715220 | MtrunA17_Chr8g0335591 | 37.500 | 392 | 222 | 8 | 10 | 396 | 32 | 405 | 2.76e-71 | 229 |
| Msa0715220 | MtrunA17_Chr1g0199801 | 30.532 | 357 | 212 | 11 | 10 | 351 | 75 | 410 | 8.28e-35 | 134 |
| Msa0715220 | MtrunA17_Chr1g0185551 | 26.032 | 315 | 192 | 12 | 12 | 318 | 32 | 313 | 7.19e-25 | 104 |
| Msa0715220 | MtrunA17_Chr2g0292051 | 27.551 | 392 | 221 | 19 | 10 | 392 | 69 | 406 | 3.25e-20 | 92.0 |
| Msa0715220 | MtrunA17_Chr7g0259871 | 24.425 | 348 | 221 | 11 | 12 | 350 | 32 | 346 | 1.25e-19 | 89.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0715220 | AT4G37070.2 | 56.136 | 383 | 165 | 2 | 8 | 390 | 17 | 396 | 3.70e-159 | 454 |
| Msa0715220 | AT4G37060.1 | 56.806 | 382 | 162 | 2 | 9 | 390 | 18 | 396 | 3.01e-156 | 447 |
| Msa0715220 | AT4G37070.3 | 56.757 | 370 | 157 | 2 | 8 | 377 | 17 | 383 | 9.89e-155 | 442 |
| Msa0715220 | AT4G37070.1 | 56.757 | 370 | 157 | 2 | 8 | 377 | 17 | 383 | 9.89e-155 | 442 |
| Msa0715220 | AT2G26560.1 | 57.772 | 386 | 151 | 5 | 8 | 389 | 17 | 394 | 5.99e-152 | 436 |
| Msa0715220 | AT4G37060.2 | 52.542 | 413 | 162 | 3 | 9 | 390 | 18 | 427 | 3.18e-149 | 430 |
| Msa0715220 | AT4G37050.1 | 58.355 | 389 | 155 | 3 | 9 | 391 | 34 | 421 | 9.21e-149 | 428 |
| Msa0715220 | AT4G37070.4 | 54.324 | 370 | 155 | 3 | 8 | 377 | 17 | 372 | 1.20e-144 | 416 |
| Msa0715220 | AT5G43590.1 | 53.368 | 386 | 166 | 8 | 8 | 389 | 12 | 387 | 8.81e-119 | 351 |
| Msa0715220 | AT5G43590.2 | 53.368 | 386 | 166 | 8 | 8 | 389 | 79 | 454 | 6.60e-118 | 351 |
| Msa0715220 | AT3G54950.1 | 31.792 | 346 | 209 | 10 | 10 | 351 | 98 | 420 | 8.31e-38 | 142 |
| Msa0715220 | AT2G39220.1 | 31.700 | 347 | 211 | 10 | 10 | 351 | 108 | 433 | 2.01e-36 | 139 |
| Msa0715220 | AT4G29800.1 | 29.201 | 363 | 216 | 11 | 6 | 350 | 117 | 456 | 2.43e-30 | 122 |
| Msa0715220 | AT4G29800.2 | 29.670 | 364 | 214 | 12 | 6 | 350 | 117 | 457 | 3.09e-30 | 122 |
| Msa0715220 | AT3G63200.1 | 25.234 | 321 | 197 | 11 | 12 | 322 | 32 | 319 | 3.56e-25 | 106 |
Find 83 sgRNAs with CRISPR-Local
Find 200 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCTCAATGGTGCCTTTATC+TGG | 0.217186 | 5_1:+8191036 | None:intergenic |
| ATGCTAAGATGGTTGCTAAA+TGG | 0.247274 | 5_1:-8192009 | Msa0715220:CDS |
| TAACAACGTTTGTCAAAGTT+TGG | 0.299732 | 5_1:+8192929 | None:intergenic |
| ATTTCTTTGGCAGCAAATAA+TGG | 0.305575 | 5_1:+8193265 | None:intergenic |
| ATCACTGTTCTTAGCATTGA+TGG | 0.321271 | 5_1:-8193561 | Msa0715220:CDS |
| TTTGAAACAGTTCCAGATAA+AGG | 0.323156 | 5_1:-8191048 | Msa0715220:CDS |
| GAGATTGAAGGGCAGTAAAA+AGG | 0.329901 | 5_1:+8191891 | None:intergenic |
| CAGTTATTAGCCTTTGGATT+TGG | 0.335105 | 5_1:+8193289 | None:intergenic |
| GTAGAATGGCACAATTTCTT+TGG | 0.336854 | 5_1:+8193252 | None:intergenic |
| TTGACAGGATCCAAGTATAA+TGG | 0.349207 | 5_1:-8193003 | Msa0715220:CDS |
| CTACCTTGAATCTCAACTTC+AGG | 0.365376 | 5_1:-8193499 | Msa0715220:intron |
| TGACAGGATCCAAGTATAAT+GGG | 0.365515 | 5_1:-8193002 | Msa0715220:CDS |
| TGTTTGCATTGCAGGTTTGC+TGG | 0.376527 | 5_1:-8190465 | Msa0715220:intron |
| TGCTAAGATGGTTGCTAAAT+GGG | 0.379655 | 5_1:-8192008 | Msa0715220:CDS |
| AATGGACAGTTATTAGCCTT+TGG | 0.381267 | 5_1:+8193283 | None:intergenic |
| GAAACAGGAAGATACATTAC+AGG | 0.392737 | 5_1:-8191184 | Msa0715220:intron |
| AGAAGTGGGGATAATGGTAT+AGG | 0.393621 | 5_1:-8192094 | Msa0715220:CDS |
| TTATCCCCACTTCTCCCATC+TGG | 0.399340 | 5_1:+8192103 | None:intergenic |
| CAATGAAGCAAGCAATGATA+TGG | 0.405444 | 5_1:-8191933 | Msa0715220:CDS |
| GATGGGAGAAGTGGGGATAA+TGG | 0.430947 | 5_1:-8192100 | Msa0715220:CDS |
| AAGCCTTTGTTGTGTTTATG+AGG | 0.435853 | 5_1:+8193025 | None:intergenic |
| TTTGAATAATCTAGTAAAAG+TGG | 0.438859 | 5_1:-8191124 | Msa0715220:CDS |
| GGCGTCAGAGGAATCATTCC+TGG | 0.439433 | 5_1:-8193534 | Msa0715220:CDS |
| AAACCTGAAGTTGAGATTCA+AGG | 0.467692 | 5_1:+8193496 | None:intergenic |
| GAAGTGGGGATAATGGTATA+GGG | 0.474757 | 5_1:-8192093 | Msa0715220:CDS |
| GAGATACTCCCCATTATACT+TGG | 0.481242 | 5_1:+8192993 | None:intergenic |
| CAGGTTTGCTGGTTTACTCT+CGG | 0.481566 | 5_1:-8190454 | Msa0715220:CDS |
| TACACGAGTGAATTTAGATA+CGG | 0.484931 | 5_1:-8191076 | Msa0715220:CDS |
| TAGTGAGCTGGTAAATAAGT+TGG | 0.487210 | 5_1:+8192587 | None:intergenic |
| AGGAAACCAGATGGGAGAAG+TGG | 0.489397 | 5_1:-8192109 | Msa0715220:CDS |
| GGTAGTTGTCTTGAGATTGA+AGG | 0.493175 | 5_1:+8191879 | None:intergenic |
| TCATATTTCTGATCAGCTTG+TGG | 0.494064 | 5_1:+8192971 | None:intergenic |
| TCATTGAAACAATCTAGTAT+TGG | 0.496446 | 5_1:+8191950 | None:intergenic |
| ATTGTTATATCGATAGGGAC+AGG | 0.498950 | 5_1:-8192058 | Msa0715220:CDS |
| CTAAATGGGGTGCATTGACT+TGG | 0.502394 | 5_1:-8191994 | Msa0715220:CDS |
| GTAATTGCCGGGACAAGTAC+AGG | 0.508616 | 5_1:-8193340 | Msa0715220:CDS |
| AACACAACAAAGGCTTTGAC+AGG | 0.510884 | 5_1:-8193018 | Msa0715220:CDS |
| TGGATTTGGTGCTGCTAACA+TGG | 0.511228 | 5_1:+8193303 | None:intergenic |
| AGTTTCTGAACATCAAAAGA+TGG | 0.514848 | 5_1:+8192904 | None:intergenic |
| AAGTGACAAAGCATATCATA+AGG | 0.518189 | 5_1:-8192129 | Msa0715220:CDS |
| AAAGAATACAACCTCATTGA+CGG | 0.525528 | 5_1:-8192530 | Msa0715220:CDS |
| TTGAATAATCTAGTAAAAGT+GGG | 0.529289 | 5_1:-8191123 | Msa0715220:CDS |
| AGCCTTTGTTGTGTTTATGA+GGG | 0.529416 | 5_1:+8193026 | None:intergenic |
| TGGTGTGGCTGCTAACAATC+CGG | 0.532379 | 5_1:-8192507 | Msa0715220:intron |
| CCATTGAGGAAGAACTCAAA+AGG | 0.542620 | 5_1:-8191023 | Msa0715220:intron |
| TTGACTTGGTTATTCAACAA+TGG | 0.544592 | 5_1:-8191980 | Msa0715220:CDS |
| GGAAACCAGATGGGAGAAGT+GGG | 0.551573 | 5_1:-8192108 | Msa0715220:CDS |
| AGATAGACGGTGAGGATGCA+AGG | 0.552648 | 5_1:-8193381 | Msa0715220:CDS |
| GTAGTTGTCTTGAGATTGAA+GGG | 0.559050 | 5_1:+8191880 | None:intergenic |
| GTTCTTAGCATTGATGGTGG+AGG | 0.559782 | 5_1:-8193555 | Msa0715220:CDS |
| GAGACCACCTGTACTTGTCC+CGG | 0.561120 | 5_1:+8193333 | None:intergenic |
| GCCTTTGTTGTGTTTATGAG+GGG | 0.565853 | 5_1:+8193027 | None:intergenic |
| GAGAGTAGTACATCTAAAGC+TGG | 0.566877 | 5_1:+8192638 | None:intergenic |
| AGATATTTGCATAGCTACAT+CGG | 0.569187 | 5_1:-8192615 | Msa0715220:CDS |
| ACACGAGTGAATTTAGATAC+GGG | 0.570644 | 5_1:-8191075 | Msa0715220:CDS |
| GCGCAAGTACAATGCTAAGA+TGG | 0.573767 | 5_1:-8192020 | Msa0715220:CDS |
| ATTGATGGTGGAGGCGTCAG+AGG | 0.577961 | 5_1:-8193546 | Msa0715220:CDS |
| AGAACAGTGATGAAATTCAC+AGG | 0.591725 | 5_1:+8193573 | None:intergenic |
| AATTAAAACTACCTGATAGG+AGG | 0.595673 | 5_1:+8192864 | None:intergenic |
| AAACAGGAAGATACATTACA+GGG | 0.601655 | 5_1:-8191183 | Msa0715220:intron |
| CTTAACTTACTTGAATTCTG+AGG | 0.602574 | 5_1:+8191858 | None:intergenic |
| ATTACTTTACAGGAGATAGA+CGG | 0.615563 | 5_1:-8193394 | Msa0715220:intron |
| TCCAGATAAAGGCACCATTG+AGG | 0.621459 | 5_1:-8191037 | Msa0715220:CDS |
| ACTGTTCTTAGCATTGATGG+TGG | 0.626560 | 5_1:-8193558 | Msa0715220:CDS |
| ATATCATAAGGAAACCAGAT+GGG | 0.629961 | 5_1:-8192117 | Msa0715220:CDS |
| CATATCATAAGGAAACCAGA+TGG | 0.632027 | 5_1:-8192118 | Msa0715220:CDS |
| AGCTGATCAGAAATATGACA+AGG | 0.632561 | 5_1:-8192966 | Msa0715220:CDS |
| AAACAGGCAGACCTTTGCTG+TGG | 0.640107 | 5_1:+8193205 | None:intergenic |
| CAGCCACACCACCGTCAATG+AGG | 0.642701 | 5_1:+8192519 | None:intergenic |
| CTGAAGTTGAGATTCAAGGT+AGG | 0.644708 | 5_1:+8193500 | None:intergenic |
| CAACCTCATTGACGGTGGTG+TGG | 0.650004 | 5_1:-8192522 | Msa0715220:CDS |
| GTTAGCAGCACCAAATCCAA+AGG | 0.650775 | 5_1:-8193299 | Msa0715220:CDS |
| GACAGGATCCAAGTATAATG+GGG | 0.665880 | 5_1:-8193001 | Msa0715220:CDS |
| AGGTAGGCAAGAATAACACC+AGG | 0.666909 | 5_1:+8193516 | None:intergenic |
| GCTAAGATGGTTGCTAAATG+GGG | 0.667354 | 5_1:-8192007 | Msa0715220:CDS |
| ACCCCTCATAAACACAACAA+AGG | 0.672606 | 5_1:-8193028 | Msa0715220:CDS |
| GCTGATCAGAAATATGACAA+GGG | 0.691046 | 5_1:-8192965 | Msa0715220:CDS |
| ACAGGAAGATACATTACAGG+GGG | 0.697116 | 5_1:-8191181 | Msa0715220:intron |
| TTTACAGGAGATAGACGGTG+AGG | 0.702178 | 5_1:-8193389 | Msa0715220:intron |
| GAAACCAGATGGGAGAAGTG+GGG | 0.707369 | 5_1:-8192107 | Msa0715220:CDS |
| ATTGCCGGGACAAGTACAGG+TGG | 0.725577 | 5_1:-8193337 | Msa0715220:CDS |
| GAATACAACCTCATTGACGG+TGG | 0.739887 | 5_1:-8192527 | Msa0715220:CDS |
| AACAGGAAGATACATTACAG+GGG | 0.742212 | 5_1:-8191182 | Msa0715220:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTAATTACTAAATTTGTA+AGG | - | chr5_1:8191630-8191649 | Msa0715220:intron | 10.0% |
| !! | TCATATCTTTAAATTAATAA+TGG | - | chr5_1:8192723-8192742 | Msa0715220:intron | 10.0% |
| !! | TTCTAATTAACTTAAAAATA+GGG | + | chr5_1:8193133-8193152 | None:intergenic | 10.0% |
| !! | ATTCTAATTAACTTAAAAAT+AGG | + | chr5_1:8193134-8193153 | None:intergenic | 10.0% |
| !!! | AAACATATATAATTAGTTTT+AGG | + | chr5_1:8193518-8193537 | None:intergenic | 10.0% |
| !! | ATTAATTAAGATATTAGTGA+AGG | + | chr5_1:8190547-8190566 | None:intergenic | 15.0% |
| !!! | TATTAGTATTGTTAGTTTTT+AGG | + | chr5_1:8190928-8190947 | None:intergenic | 15.0% |
| !! | AAGCAAATATATAAAAATAG+TGG | - | chr5_1:8192513-8192532 | Msa0715220:CDS | 15.0% |
| !! | AGCAAATATATAAAAATAGT+GGG | - | chr5_1:8192514-8192533 | Msa0715220:CDS | 15.0% |
| !! | TTTAAATTGTTACAAACTTA+CGG | - | chr5_1:8192781-8192800 | Msa0715220:intron | 15.0% |
| !!! | ATTGAAGGAAAATTTTAAAA+GGG | + | chr5_1:8193072-8193091 | None:intergenic | 15.0% |
| !!! | AATTGAAGGAAAATTTTAAA+AGG | + | chr5_1:8193073-8193092 | None:intergenic | 15.0% |
| !!! | TAGTGATTGAAAATTTTATA+AGG | + | chr5_1:8193102-8193121 | None:intergenic | 15.0% |
| !! | GAAAAGTTATCATATTTATA+AGG | - | chr5_1:8193408-8193427 | Msa0715220:intron | 15.0% |
| !!! | TAAATGGTTAAATATGTTTT+TGG | + | chr5_1:8193435-8193454 | None:intergenic | 15.0% |
| !! | ATAGATACCAAAAATTAAAC+AGG | + | chr5_1:8190812-8190831 | None:intergenic | 20.0% |
| !! | AGTATAAATACATGAAAATC+TGG | - | chr5_1:8190867-8190886 | Msa0715220:intron | 20.0% |
| !! | AATACTAATATTATATGCAG+TGG | - | chr5_1:8190938-8190957 | Msa0715220:intron | 20.0% |
| !! | AAAAATTAAAACTACCTGAT+AGG | + | chr5_1:8191140-8191159 | None:intergenic | 20.0% |
| !!! | TCTTTTCTTCTTTTTAATGT+GGG | + | chr5_1:8191562-8191581 | None:intergenic | 20.0% |
| !!! | ATCTTTTCTTCTTTTTAATG+TGG | + | chr5_1:8191563-8191582 | None:intergenic | 20.0% |
| !! | TTAAAACAAGTTTCGATATA+TGG | - | chr5_1:8191692-8191711 | Msa0715220:intron | 20.0% |
| !!! | GTTTTATTGTTATATCGATA+GGG | - | chr5_1:8191935-8191954 | Msa0715220:CDS | 20.0% |
| !! | AATGTACTATAGATAAGATT+TGG | + | chr5_1:8192684-8192703 | None:intergenic | 20.0% |
| !! | TTTGAATAATCTAGTAAAAG+TGG | - | chr5_1:8192874-8192893 | Msa0715220:intron | 20.0% |
| !! | TTGAATAATCTAGTAAAAGT+GGG | - | chr5_1:8192875-8192894 | Msa0715220:intron | 20.0% |
| !!! | TTTAGGGTTAAATATGTTTT+TGG | - | chr5_1:8193016-8193035 | Msa0715220:CDS | 20.0% |
| !!! | AAAATTTTAAAAGGGCTAAA+AGG | + | chr5_1:8193064-8193083 | None:intergenic | 20.0% |
| !! | TTATAAGGACTAAAAATTGA+AGG | + | chr5_1:8193087-8193106 | None:intergenic | 20.0% |
| !!! | AAATTTTCAATCACTACTTT+TGG | - | chr5_1:8193106-8193125 | Msa0715220:intron | 20.0% |
| !!! | ATATGAGTTTACTTTAAAGA+AGG | - | chr5_1:8193316-8193335 | Msa0715220:CDS | 20.0% |
| !!! | TATGAGTTTACTTTAAAGAA+GGG | - | chr5_1:8193317-8193336 | Msa0715220:CDS | 20.0% |
| !!! | AAAATTTTCATCTTCACTTT+TGG | + | chr5_1:8193344-8193363 | None:intergenic | 20.0% |
| !!! | GTGAAGATGAAAATTTTTTT+AGG | - | chr5_1:8193347-8193366 | Msa0715220:CDS | 20.0% |
| !!! | ATATAATTAGTTTTAGGAGT+TGG | + | chr5_1:8193512-8193531 | None:intergenic | 20.0% |
| !! | GTATATGTTGATTACTTTAC+AGG | - | chr5_1:8190594-8190613 | Msa0715220:intron | 25.0% |
| !!! | GATTATTTTGATGTAATTGC+CGG | - | chr5_1:8190646-8190665 | Msa0715220:intron | 25.0% |
| !!! | ATTATTTTGATGTAATTGCC+GGG | - | chr5_1:8190647-8190666 | Msa0715220:intron | 25.0% |
| !!! | AAATATTTGGCAAGTTTTGA+AGG | + | chr5_1:8190771-8190790 | None:intergenic | 25.0% |
| ! | TAAATACATGAAAATCTGGT+TGG | - | chr5_1:8190871-8190890 | Msa0715220:intron | 25.0% |
| ! | AAATACATGAAAATCTGGTT+GGG | - | chr5_1:8190872-8190891 | Msa0715220:intron | 25.0% |
| !!! | AGTATTGTTAGTTTTTAGGA+TGG | + | chr5_1:8190924-8190943 | None:intergenic | 25.0% |
| ! | TTCCAAAAAAAAGATGAACA+TGG | - | chr5_1:8191435-8191454 | Msa0715220:intron | 25.0% |
| ! | TCCAAAAAAAAGATGAACAT+GGG | - | chr5_1:8191436-8191455 | Msa0715220:intron | 25.0% |
| !!! | GAGTTTTTTTTCGATATTCT+TGG | + | chr5_1:8191535-8191554 | None:intergenic | 25.0% |
| !!! | GACTTACTTTTGAAGATTAT+TGG | + | chr5_1:8191668-8191687 | None:intergenic | 25.0% |
| ! | ATAATCTTCAAAAGTAAGTC+AGG | - | chr5_1:8191668-8191687 | Msa0715220:intron | 25.0% |
| !!! | TTTTTTTTATAGGCCTAAGA+CGG | - | chr5_1:8191779-8191798 | Msa0715220:intron | 25.0% |
| ! | AAATCATATGTCAACAATCA+AGG | + | chr5_1:8191823-8191842 | None:intergenic | 25.0% |
| ! | ATATGATTTATTGCAGAGTA+TGG | - | chr5_1:8191834-8191853 | Msa0715220:intron | 25.0% |
| !!! | CGTTTTATTGTTATATCGAT+AGG | - | chr5_1:8191934-8191953 | Msa0715220:CDS | 25.0% |
| ! | TCATTGAAACAATCTAGTAT+TGG | + | chr5_1:8192051-8192070 | None:intergenic | 25.0% |
| !! | CTTAGTTGATATTTGAATTC+CGG | + | chr5_1:8192269-8192288 | None:intergenic | 25.0% |
| !! | CAATTTTGTCTATTGAGTAT+TGG | - | chr5_1:8192371-8192390 | Msa0715220:intron | 25.0% |
| ! | TTATTTGCAGAAGAAATCTT+GGG | + | chr5_1:8192422-8192441 | None:intergenic | 25.0% |
| ! | TTTATTTGCAGAAGAAATCT+TGG | + | chr5_1:8192423-8192442 | None:intergenic | 25.0% |
| ! | AAAAACTCATTTGTCAACTT+AGG | + | chr5_1:8192625-8192644 | None:intergenic | 25.0% |
| ! | CAAACAAAATAAAATCTAGC+TGG | + | chr5_1:8192660-8192679 | None:intergenic | 25.0% |
| !!! | AAGCTGATGAAATTTTTTAG+AGG | - | chr5_1:8193376-8193395 | Msa0715220:CDS | 25.0% |
| !!! | AGCTGATGAAATTTTTTAGA+GGG | - | chr5_1:8193377-8193396 | Msa0715220:CDS | 25.0% |
| ! | ATTATATATGTTTGCATTGC+AGG | - | chr5_1:8193525-8193544 | Msa0715220:CDS | 25.0% |
| ATTACTTTACAGGAGATAGA+CGG | - | chr5_1:8190604-8190623 | Msa0715220:intron | 30.0% | |
| ATTTCTTTGGCAGCAAATAA+TGG | + | chr5_1:8190736-8190755 | None:intergenic | 30.0% | |
| ! | CTTTGCTGTGGAAAAATATT+TGG | + | chr5_1:8190784-8190803 | None:intergenic | 30.0% |
| ! | CAAATATTTTTCCACAGCAA+AGG | - | chr5_1:8190782-8190801 | Msa0715220:intron | 30.0% |
| TTATACGCACACATATGATA+TGG | + | chr5_1:8190842-8190861 | None:intergenic | 30.0% | |
| AATACATGAAAATCTGGTTG+GGG | - | chr5_1:8190873-8190892 | Msa0715220:intron | 30.0% | |
| TAACAACGTTTGTCAAAGTT+TGG | + | chr5_1:8191072-8191091 | None:intergenic | 30.0% | |
| AGTTTCTGAACATCAAAAGA+TGG | + | chr5_1:8191097-8191116 | None:intergenic | 30.0% | |
| AATTAAAACTACCTGATAGG+AGG | + | chr5_1:8191137-8191156 | None:intergenic | 30.0% | |
| AGATATTTGCATAGCTACAT+CGG | - | chr5_1:8191383-8191402 | Msa0715220:intron | 30.0% | |
| !!! | TTTTTTTGGAAATAGTGAGC+TGG | + | chr5_1:8191426-8191445 | None:intergenic | 30.0% |
| !!! | TCCCATGTTCATCTTTTTTT+TGG | + | chr5_1:8191440-8191459 | None:intergenic | 30.0% |
| AAAGAATACAACCTCATTGA+CGG | - | chr5_1:8191468-8191487 | Msa0715220:intron | 30.0% | |
| TTACTAAATTTGTAAGGACC+AGG | - | chr5_1:8191636-8191655 | Msa0715220:intron | 30.0% | |
| TACTAAATTTGTAAGGACCA+GGG | - | chr5_1:8191637-8191656 | Msa0715220:intron | 30.0% | |
| !!! | TTTTTTTATAGGCCTAAGAC+GGG | - | chr5_1:8191780-8191799 | Msa0715220:intron | 30.0% |
| AAGTGACAAAGCATATCATA+AGG | - | chr5_1:8191869-8191888 | Msa0715220:CDS | 30.0% | |
| ATATCATAAGGAAACCAGAT+GGG | - | chr5_1:8191881-8191900 | Msa0715220:CDS | 30.0% | |
| !! | TTGACTTGGTTATTCAACAA+TGG | - | chr5_1:8192018-8192037 | Msa0715220:CDS | 30.0% |
| CTTAACTTACTTGAATTCTG+AGG | + | chr5_1:8192143-8192162 | None:intergenic | 30.0% | |
| AAGTAAGTTAAGCACATGTT+TGG | - | chr5_1:8192151-8192170 | Msa0715220:CDS | 30.0% | |
| !!! | TTTTGTCTATTGAGTATTGG+TGG | - | chr5_1:8192374-8192393 | Msa0715220:intron | 30.0% |
| AAATTGTTACAAACTTACGG+TGG | - | chr5_1:8192784-8192803 | Msa0715220:intron | 30.0% | |
| AAACAGGAAGATACATTACA+GGG | - | chr5_1:8192815-8192834 | Msa0715220:intron | 30.0% | |
| TACACGAGTGAATTTAGATA+CGG | - | chr5_1:8192922-8192941 | Msa0715220:CDS | 30.0% | |
| ! | TTTGAAACAGTTCCAGATAA+AGG | - | chr5_1:8192950-8192969 | Msa0715220:CDS | 30.0% |
| !!! | AGCTTTTTTTCCCTTAGTTT+GGG | + | chr5_1:8193489-8193508 | None:intergenic | 30.0% |
| AGAACAGTGATGAAATTCAC+AGG | + | chr5_1:8190428-8190447 | None:intergenic | 35.0% | |
| ! | ATCACTGTTCTTAGCATTGA+TGG | - | chr5_1:8190437-8190456 | Msa0715220:CDS | 35.0% |
| AAACCTGAAGTTGAGATTCA+AGG | + | chr5_1:8190505-8190524 | None:intergenic | 35.0% | |
| !! | CAGTTATTAGCCTTTGGATT+TGG | + | chr5_1:8190712-8190731 | None:intergenic | 35.0% |
| !! | AATGGACAGTTATTAGCCTT+TGG | + | chr5_1:8190718-8190737 | None:intergenic | 35.0% |
| GTAGAATGGCACAATTTCTT+TGG | + | chr5_1:8190749-8190768 | None:intergenic | 35.0% | |
| !! | AGGTCTGCCTGTTTAATTTT+TGG | - | chr5_1:8190802-8190821 | Msa0715220:intron | 35.0% |
| ! | AGCCTTTGTTGTGTTTATGA+GGG | + | chr5_1:8190975-8190994 | None:intergenic | 35.0% |
| ! | AAGCCTTTGTTGTGTTTATG+AGG | + | chr5_1:8190976-8190995 | None:intergenic | 35.0% |
| TTGACAGGATCCAAGTATAA+TGG | - | chr5_1:8190995-8191014 | Msa0715220:intron | 35.0% | |
| TGACAGGATCCAAGTATAAT+GGG | - | chr5_1:8190996-8191015 | Msa0715220:intron | 35.0% | |
| ! | TCATATTTCTGATCAGCTTG+TGG | + | chr5_1:8191030-8191049 | None:intergenic | 35.0% |
| AGCTGATCAGAAATATGACA+AGG | - | chr5_1:8191032-8191051 | Msa0715220:CDS | 35.0% | |
| GCTGATCAGAAATATGACAA+GGG | - | chr5_1:8191033-8191052 | Msa0715220:CDS | 35.0% | |
| TGATAGGAGGAAAAAATGGT+AGG | + | chr5_1:8191124-8191143 | None:intergenic | 35.0% | |
| !!! | TACCATTTTTTCCTCCTATC+AGG | - | chr5_1:8191123-8191142 | Msa0715220:CDS | 35.0% |
| TACCTGATAGGAGGAAAAAA+TGG | + | chr5_1:8191128-8191147 | None:intergenic | 35.0% | |
| TAGTGAGCTGGTAAATAAGT+TGG | + | chr5_1:8191414-8191433 | None:intergenic | 35.0% | |
| CTAACAATCCGGTAAAATTC+TGG | - | chr5_1:8191502-8191521 | Msa0715220:intron | 35.0% | |
| !!! | TTTTTTATAGGCCTAAGACG+GGG | - | chr5_1:8191781-8191800 | Msa0715220:intron | 35.0% |
| CATATCATAAGGAAACCAGA+TGG | - | chr5_1:8191880-8191899 | Msa0715220:CDS | 35.0% | |
| ATTGTTATATCGATAGGGAC+AGG | - | chr5_1:8191940-8191959 | Msa0715220:CDS | 35.0% | |
| ATGCTAAGATGGTTGCTAAA+TGG | - | chr5_1:8191989-8192008 | Msa0715220:CDS | 35.0% | |
| TGCTAAGATGGTTGCTAAAT+GGG | - | chr5_1:8191990-8192009 | Msa0715220:CDS | 35.0% | |
| CAATGAAGCAAGCAATGATA+TGG | - | chr5_1:8192065-8192084 | Msa0715220:CDS | 35.0% | |
| GTAGTTGTCTTGAGATTGAA+GGG | + | chr5_1:8192121-8192140 | None:intergenic | 35.0% | |
| CTACGTATGTCATTGTGATT+TGG | + | chr5_1:8192184-8192203 | None:intergenic | 35.0% | |
| ACACACAACCCTTAAACAAA+TGG | - | chr5_1:8192555-8192574 | Msa0715220:CDS | 35.0% | |
| ACCCTTAAACAAATGGATGA+AGG | - | chr5_1:8192562-8192581 | Msa0715220:CDS | 35.0% | |
| CCCTTCATCCATTTGTTTAA+GGG | + | chr5_1:8192566-8192585 | None:intergenic | 35.0% | |
| CCCTTAAACAAATGGATGAA+GGG | - | chr5_1:8192563-8192582 | Msa0715220:CDS | 35.0% | |
| TCCCTTCATCCATTTGTTTA+AGG | + | chr5_1:8192567-8192586 | None:intergenic | 35.0% | |
| ACAAATGGATGAAGGGAATT+TGG | - | chr5_1:8192570-8192589 | Msa0715220:CDS | 35.0% | |
| GAAACAGGAAGATACATTAC+AGG | - | chr5_1:8192814-8192833 | Msa0715220:intron | 35.0% | |
| AACAGGAAGATACATTACAG+GGG | - | chr5_1:8192816-8192835 | Msa0715220:intron | 35.0% | |
| ACACGAGTGAATTTAGATAC+GGG | - | chr5_1:8192923-8192942 | Msa0715220:CDS | 35.0% | |
| TTTGCATTAGTCCCAAACTA+AGG | - | chr5_1:8193475-8193494 | Msa0715220:intron | 35.0% | |
| TTGCATTAGTCCCAAACTAA+GGG | - | chr5_1:8193476-8193495 | Msa0715220:intron | 35.0% | |
| !!! | GAGCTTTTTTTCCCTTAGTT+TGG | + | chr5_1:8193490-8193509 | None:intergenic | 35.0% |
| AAAAAGTCCATCCCACAAAA+TGG | - | chr5_1:8193581-8193600 | Msa0715220:CDS | 35.0% | |
| !! | ACTGTTCTTAGCATTGATGG+TGG | - | chr5_1:8190440-8190459 | Msa0715220:CDS | 40.0% |
| CTGAAGTTGAGATTCAAGGT+AGG | + | chr5_1:8190501-8190520 | None:intergenic | 40.0% | |
| CTACCTTGAATCTCAACTTC+AGG | - | chr5_1:8190499-8190518 | Msa0715220:intron | 40.0% | |
| !!! | GGCAAGTTTTGAAGGTAGAA+TGG | + | chr5_1:8190763-8190782 | None:intergenic | 40.0% |
| ACCCCTCATAAACACAACAA+AGG | - | chr5_1:8190970-8190989 | Msa0715220:intron | 40.0% | |
| ! | GCCTTTGTTGTGTTTATGAG+GGG | + | chr5_1:8190974-8190993 | None:intergenic | 40.0% |
| ! | AACACAACAAAGGCTTTGAC+AGG | - | chr5_1:8190980-8190999 | Msa0715220:intron | 40.0% |
| GACAGGATCCAAGTATAATG+GGG | - | chr5_1:8190997-8191016 | Msa0715220:intron | 40.0% | |
| GAGATACTCCCCATTATACT+TGG | + | chr5_1:8191008-8191027 | None:intergenic | 40.0% | |
| ! | GAGAGTAGTACATCTAAAGC+TGG | + | chr5_1:8191363-8191382 | None:intergenic | 40.0% |
| ! | AGAAGTGGGGATAATGGTAT+AGG | - | chr5_1:8191904-8191923 | Msa0715220:CDS | 40.0% |
| ! | GAAGTGGGGATAATGGTATA+GGG | - | chr5_1:8191905-8191924 | Msa0715220:CDS | 40.0% |
| GCTAAGATGGTTGCTAAATG+GGG | - | chr5_1:8191991-8192010 | Msa0715220:CDS | 40.0% | |
| CAGTAAAAAGGACAGCGTTA+TGG | + | chr5_1:8192098-8192117 | None:intergenic | 40.0% | |
| GAGATTGAAGGGCAGTAAAA+AGG | + | chr5_1:8192110-8192129 | None:intergenic | 40.0% | |
| GGTAGTTGTCTTGAGATTGA+AGG | + | chr5_1:8192122-8192141 | None:intergenic | 40.0% | |
| TGCGATCATGTCAAACTTAC+CGG | - | chr5_1:8192247-8192266 | Msa0715220:intron | 40.0% | |
| !! | TCTATTGAGTATTGGTGGTC+TGG | - | chr5_1:8192379-8192398 | Msa0715220:intron | 40.0% |
| ATCTTGGGTTCCAAGAAAGA+TGG | + | chr5_1:8192407-8192426 | None:intergenic | 40.0% | |
| !! | TACGGTGGTTTGTTTGAAAC+AGG | - | chr5_1:8192799-8192818 | Msa0715220:intron | 40.0% |
| ACAGGAAGATACATTACAGG+GGG | - | chr5_1:8192817-8192836 | Msa0715220:intron | 40.0% | |
| !!! | CCTTTTGAGTTCTTCCTCAA+TGG | + | chr5_1:8192978-8192997 | None:intergenic | 40.0% |
| CCATTGAGGAAGAACTCAAA+AGG | - | chr5_1:8192975-8192994 | Msa0715220:CDS | 40.0% | |
| !!! | TTACTTGCCATTTTGTGGGA+TGG | + | chr5_1:8193591-8193610 | None:intergenic | 40.0% |
| !! | GTTCTTAGCATTGATGGTGG+AGG | - | chr5_1:8190443-8190462 | Msa0715220:CDS | 45.0% |
| AGGTAGGCAAGAATAACACC+AGG | + | chr5_1:8190485-8190504 | None:intergenic | 45.0% | |
| TTTACAGGAGATAGACGGTG+AGG | - | chr5_1:8190609-8190628 | Msa0715220:intron | 45.0% | |
| !! | TGGATTTGGTGCTGCTAACA+TGG | + | chr5_1:8190698-8190717 | None:intergenic | 45.0% |
| GTTAGCAGCACCAAATCCAA+AGG | - | chr5_1:8190699-8190718 | Msa0715220:intron | 45.0% | |
| ACATGAAAATCTGGTTGGGG+TGG | - | chr5_1:8190876-8190895 | Msa0715220:intron | 45.0% | |
| CATGAAAATCTGGTTGGGGT+GGG | - | chr5_1:8190877-8190896 | Msa0715220:intron | 45.0% | |
| ATGAAAATCTGGTTGGGGTG+GGG | - | chr5_1:8190878-8190897 | Msa0715220:intron | 45.0% | |
| TGGGGGATTTAAGGAGTCTA+GGG | - | chr5_1:8190896-8190915 | Msa0715220:intron | 45.0% | |
| GAATACAACCTCATTGACGG+TGG | - | chr5_1:8191471-8191490 | Msa0715220:intron | 45.0% | |
| !! | TCCGGTAAAATTCTGGCTCA+AGG | - | chr5_1:8191509-8191528 | Msa0715220:intron | 45.0% |
| ! | GCCTTGAGCCAGAATTTTAC+CGG | + | chr5_1:8191513-8191532 | None:intergenic | 45.0% |
| GAAGATTATTGGATCGACCC+TGG | + | chr5_1:8191657-8191676 | None:intergenic | 45.0% | |
| GCGCAAGTACAATGCTAAGA+TGG | - | chr5_1:8191978-8191997 | Msa0715220:CDS | 45.0% | |
| !! | CTAAATGGGGTGCATTGACT+TGG | - | chr5_1:8192004-8192023 | Msa0715220:CDS | 45.0% |
| TGGTCTGGATCCATCTTTCT+TGG | - | chr5_1:8192394-8192413 | Msa0715220:intron | 45.0% | |
| !! | TCCAGATAAAGGCACCATTG+AGG | - | chr5_1:8192961-8192980 | Msa0715220:CDS | 45.0% |
| TCCTCAATGGTGCCTTTATC+TGG | + | chr5_1:8192965-8192984 | None:intergenic | 45.0% | |
| TGTTTGCATTGCAGGTTTGC+TGG | - | chr5_1:8193533-8193552 | Msa0715220:CDS | 45.0% | |
| !! | CAGGTTTGCTGGTTTACTCT+CGG | - | chr5_1:8193544-8193563 | Msa0715220:CDS | 45.0% |
| !!! | TAAAAGATAATTTTTTTTAT+AGG | - | chr5_1:8191769-8191788 | Msa0715220:intron | 5.0% |
| !!! | AATTACTTTTATTTTATTTT+AGG | - | chr5_1:8192999-8193018 | Msa0715220:CDS | 5.0% |
| !!! | ATTACTTTTATTTTATTTTA+GGG | - | chr5_1:8193000-8193019 | Msa0715220:CDS | 5.0% |
| !!! | ATGAATTTTTATATTTTTTA+AGG | + | chr5_1:8193193-8193212 | None:intergenic | 5.0% |
| !!! | TTAAAAAATTTTAATTTTTC+TGG | - | chr5_1:8193230-8193249 | Msa0715220:CDS | 5.0% |
| !!! | TAAAAAATTTTAATTTTTCT+GGG | - | chr5_1:8193231-8193250 | Msa0715220:CDS | 5.0% |
| !! | ATAAGTTATTATAAAATAAA+TGG | + | chr5_1:8193451-8193470 | None:intergenic | 5.0% |
| AGATAGACGGTGAGGATGCA+AGG | - | chr5_1:8190617-8190636 | Msa0715220:intron | 50.0% | |
| GTAATTGCCGGGACAAGTAC+AGG | - | chr5_1:8190658-8190677 | Msa0715220:intron | 50.0% | |
| AAACAGGCAGACCTTTGCTG+TGG | + | chr5_1:8190796-8190815 | None:intergenic | 50.0% | |
| TGAAAATCTGGTTGGGGTGG+GGG | - | chr5_1:8190879-8190898 | Msa0715220:intron | 50.0% | |
| GTGGGGGATTTAAGGAGTCT+AGG | - | chr5_1:8190895-8190914 | Msa0715220:intron | 50.0% | |
| TGGTGTGGCTGCTAACAATC+CGG | - | chr5_1:8191491-8191510 | Msa0715220:intron | 50.0% | |
| ACCACTAAAGTCCCCGTCTT+AGG | + | chr5_1:8191795-8191814 | None:intergenic | 50.0% | |
| AGGAAACCAGATGGGAGAAG+TGG | - | chr5_1:8191889-8191908 | Msa0715220:CDS | 50.0% | |
| GGAAACCAGATGGGAGAAGT+GGG | - | chr5_1:8191890-8191909 | Msa0715220:CDS | 50.0% | |
| GAAACCAGATGGGAGAAGTG+GGG | - | chr5_1:8191891-8191910 | Msa0715220:CDS | 50.0% | |
| TTATCCCCACTTCTCCCATC+TGG | + | chr5_1:8191898-8191917 | None:intergenic | 50.0% | |
| GATGGGAGAAGTGGGGATAA+TGG | - | chr5_1:8191898-8191917 | Msa0715220:CDS | 50.0% | |
| AATTGCACGCACGCTTGTGT+AGG | + | chr5_1:8192602-8192621 | None:intergenic | 50.0% | |
| !! | ATTGATGGTGGAGGCGTCAG+AGG | - | chr5_1:8190452-8190471 | Msa0715220:CDS | 55.0% |
| GGCGTCAGAGGAATCATTCC+TGG | - | chr5_1:8190464-8190483 | Msa0715220:intron | 55.0% | |
| ATTGCCGGGACAAGTACAGG+TGG | - | chr5_1:8190661-8190680 | Msa0715220:intron | 55.0% | |
| GAGACCACCTGTACTTGTCC+CGG | + | chr5_1:8190668-8190687 | None:intergenic | 55.0% | |
| TGGTTGGGGTGGGGGATTTA+AGG | - | chr5_1:8190887-8190906 | Msa0715220:intron | 55.0% | |
| CAACCTCATTGACGGTGGTG+TGG | - | chr5_1:8191476-8191495 | Msa0715220:intron | 55.0% | |
| GCCTAAGACGGGGACTTTAG+TGG | - | chr5_1:8191791-8191810 | Msa0715220:intron | 55.0% | |
| CAGCCACACCACCGTCAATG+AGG | + | chr5_1:8191482-8191501 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 8190410 | 8193610 | 8190410 | ID=Msa0715220;Name=Msa0715220 |
| chr5_1 | mRNA | 8190410 | 8193610 | 8190410 | ID=Msa0715220-mRNA-1;Parent=Msa0715220;Name=Msa0715220-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|0|0|0.85|1|1|7|0|397 |
| chr5_1 | exon | 8193500 | 8193610 | 8193500 | ID=Msa0715220-mRNA-1:exon:3441;Parent=Msa0715220-mRNA-1 |
| chr5_1 | exon | 8193217 | 8193404 | 8193217 | ID=Msa0715220-mRNA-1:exon:3440;Parent=Msa0715220-mRNA-1 |
| chr5_1 | exon | 8192876 | 8193062 | 8192876 | ID=Msa0715220-mRNA-1:exon:3439;Parent=Msa0715220-mRNA-1 |
| chr5_1 | exon | 8192508 | 8192672 | 8192508 | ID=Msa0715220-mRNA-1:exon:3438;Parent=Msa0715220-mRNA-1 |
| chr5_1 | exon | 8191868 | 8192170 | 8191868 | ID=Msa0715220-mRNA-1:exon:3437;Parent=Msa0715220-mRNA-1 |
| chr5_1 | exon | 8191024 | 8191199 | 8191024 | ID=Msa0715220-mRNA-1:exon:3436;Parent=Msa0715220-mRNA-1 |
| chr5_1 | exon | 8190410 | 8190473 | 8190410 | ID=Msa0715220-mRNA-1:exon:3435;Parent=Msa0715220-mRNA-1 |
| chr5_1 | CDS | 8193500 | 8193610 | 8193500 | ID=Msa0715220-mRNA-1:cds;Parent=Msa0715220-mRNA-1 |
| chr5_1 | CDS | 8193217 | 8193404 | 8193217 | ID=Msa0715220-mRNA-1:cds;Parent=Msa0715220-mRNA-1 |
| chr5_1 | CDS | 8192876 | 8193062 | 8192876 | ID=Msa0715220-mRNA-1:cds;Parent=Msa0715220-mRNA-1 |
| chr5_1 | CDS | 8192508 | 8192672 | 8192508 | ID=Msa0715220-mRNA-1:cds;Parent=Msa0715220-mRNA-1 |
| chr5_1 | CDS | 8191868 | 8192170 | 8191868 | ID=Msa0715220-mRNA-1:cds;Parent=Msa0715220-mRNA-1 |
| chr5_1 | CDS | 8191024 | 8191199 | 8191024 | ID=Msa0715220-mRNA-1:cds;Parent=Msa0715220-mRNA-1 |
| chr5_1 | CDS | 8190410 | 8190473 | 8190410 | ID=Msa0715220-mRNA-1:cds;Parent=Msa0715220-mRNA-1 |
| Gene Sequence |
| Protein sequence |
