Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0757740 | TXG59559.1 | 52.800 | 125 | 43 | 2 | 33 | 141 | 184 | 308 | 2.49e-30 | 125 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0757740 | sp|Q8W4F0|DAR1_ARATH | 39.007 | 141 | 54 | 4 | 33 | 141 | 193 | 333 | 9.26e-19 | 84.7 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0757740 | A0A5C7HRZ5 | 52.800 | 125 | 43 | 2 | 33 | 141 | 184 | 308 | 1.19e-30 | 125 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0757740 | TR | Others |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0757740 | Msa0757750 | 0.842285 | 2.838761e-58 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0757740 | MtrunA17_Chr8g0373781 | 41.135 | 141 | 51 | 4 | 33 | 141 | 164 | 304 | 1.24e-21 | 89.7 |
| Msa0757740 | MtrunA17_Chr5g0403261 | 75.000 | 40 | 10 | 0 | 33 | 72 | 161 | 200 | 4.03e-15 | 70.9 |
| Msa0757740 | MtrunA17_Chr5g0403291 | 67.500 | 40 | 13 | 0 | 33 | 72 | 387 | 426 | 3.04e-13 | 65.5 |
| Msa0757740 | MtrunA17_Chr1g0154501 | 57.500 | 40 | 17 | 0 | 33 | 72 | 114 | 153 | 4.57e-12 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0757740 | AT4G36860.2 | 39.007 | 141 | 54 | 4 | 33 | 141 | 193 | 333 | 6.27e-20 | 85.1 |
| Msa0757740 | AT4G36860.1 | 39.007 | 141 | 54 | 4 | 33 | 141 | 193 | 333 | 9.42e-20 | 84.7 |
| Msa0757740 | AT4G36860.3 | 39.007 | 141 | 54 | 4 | 33 | 141 | 217 | 357 | 9.72e-20 | 84.7 |
Find 27 sgRNAs with CRISPR-Local
Find 195 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTTTAGAGTTCATCATTTC+TGG | 0.131360 | 5_2:+12706266 | Msa0757740:CDS |
| TTCACTTTCGATTCGGTATC+TGG | 0.184034 | 5_2:+12703039 | Msa0757740:CDS |
| CTGATCTCACAATCAGTTAT+TGG | 0.215459 | 5_2:-12705492 | None:intergenic |
| ATGAAGCCAGCTGAATTAAC+AGG | 0.294161 | 5_2:-12706241 | None:intergenic |
| ATCTTCTAGTCTCAGATTTA+CGG | 0.316128 | 5_2:+12703001 | Msa0757740:five_prime_UTR |
| GTGCCTAGACTCAGCAATTA+TGG | 0.330413 | 5_2:+12706472 | Msa0757740:CDS |
| TAAGTTGCATGGGAGGTGTT+TGG | 0.366678 | 5_2:+12705433 | Msa0757740:CDS |
| CATAAAATTATAGTATTTCA+AGG | 0.372725 | 5_2:-12706520 | None:intergenic |
| TGTAATATTGAGATTGACTA+TGG | 0.407432 | 5_2:+12705402 | Msa0757740:CDS |
| AAGATCCCTGTTAATTCAGC+TGG | 0.417983 | 5_2:+12706235 | Msa0757740:intron |
| AGTCTCAGATTTACGGTGGA+TGG | 0.423285 | 5_2:+12703008 | Msa0757740:exon |
| TGTGATCTTCACTTTCGATT+CGG | 0.442969 | 5_2:+12703032 | Msa0757740:CDS |
| ATGTTGTAGCTGCGAAAGAA+TGG | 0.486878 | 5_2:+12706333 | Msa0757740:CDS |
| TATAGTATTTCAAGGTAGAG+AGG | 0.489149 | 5_2:-12706512 | None:intergenic |
| ACATGTTCCGTCAGAAATCA+AGG | 0.506691 | 5_2:+12703080 | Msa0757740:CDS |
| GTATTTCAAGGTAGAGAGGT+TGG | 0.520789 | 5_2:-12706508 | None:intergenic |
| CACAATCAGTTATTGGCAGA+TGG | 0.552927 | 5_2:-12705485 | None:intergenic |
| GTCTCAGATTTACGGTGGAT+GGG | 0.561893 | 5_2:+12703009 | Msa0757740:exon |
| GTCAGAAATCAAGGCGGTCG+AGG | 0.562645 | 5_2:+12703089 | Msa0757740:CDS |
| CGTCCATAATTGCTGAGTCT+AGG | 0.580889 | 5_2:-12706475 | None:intergenic |
| TTCTAGTCTCAGATTTACGG+TGG | 0.609909 | 5_2:+12703004 | Msa0757740:five_prime_UTR |
| TCGACCGCCTTGATTTCTGA+CGG | 0.629127 | 5_2:-12703087 | None:intergenic |
| CTAGACTCAGCAATTATGGA+CGG | 0.662215 | 5_2:+12706476 | Msa0757740:CDS |
| TTGTAGCTGCGAAAGAATGG+AGG | 0.672189 | 5_2:+12706336 | Msa0757740:CDS |
| TGAAGCCAGCTGAATTAACA+GGG | 0.680493 | 5_2:-12706240 | None:intergenic |
| CTTTCGCAGCTACAACATCG+AGG | 0.708975 | 5_2:-12706328 | None:intergenic |
| TGTTCCGTCAGAAATCAAGG+CGG | 0.849755 | 5_2:+12703083 | Msa0757740:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CAAATTTTTGTTAATATTTA+TGG | + | chr5_2:12703697-12703716 | Msa0757740:intron | 10.0% |
| !!! | TTTTGATTTTGATAAATTTA+TGG | + | chr5_2:12704579-12704598 | Msa0757740:intron | 10.0% |
| !!! | GAATAAAGTTTTTTTTTTTT+TGG | - | chr5_2:12704749-12704768 | None:intergenic | 10.0% |
| !! | ATACATGAAAAAAAATTATA+TGG | - | chr5_2:12704994-12705013 | None:intergenic | 10.0% |
| !! | ATATATTACATTGTTAACAT+GGG | - | chr5_2:12704281-12704300 | None:intergenic | 15.0% |
| !!! | TTATAGTTTTTTATGTTACA+CGG | + | chr5_2:12704680-12704699 | Msa0757740:intron | 15.0% |
| !!! | CTTCTCTTTTTTTTTTTTTT+TGG | - | chr5_2:12704859-12704878 | None:intergenic | 15.0% |
| !! | AAAGAATTTAAATTTCATCT+GGG | + | chr5_2:12704888-12704907 | Msa0757740:intron | 15.0% |
| !! | TAACTATTATTATGTGAAAA+GGG | - | chr5_2:12705034-12705053 | None:intergenic | 15.0% |
| !! | GTATTATTCATAATCATATT+GGG | - | chr5_2:12705684-12705703 | None:intergenic | 15.0% |
| !! | AGTATTATTCATAATCATAT+TGG | - | chr5_2:12705685-12705704 | None:intergenic | 15.0% |
| !! | TTATAGATGAAAAAAATTTC+AGG | + | chr5_2:12706156-12706175 | Msa0757740:intron | 15.0% |
| !! | ATTGTAATTATGTATATGAG+AGG | + | chr5_2:12703241-12703260 | Msa0757740:intron | 20.0% |
| !! | TTGTAATTATGTATATGAGA+GGG | + | chr5_2:12703242-12703261 | Msa0757740:intron | 20.0% |
| !! | TATATAATTATCATCAAAGC+TGG | + | chr5_2:12703751-12703770 | Msa0757740:intron | 20.0% |
| !! | ATATAATTATCATCAAAGCT+GGG | + | chr5_2:12703752-12703771 | Msa0757740:intron | 20.0% |
| !! | TGTAAATACTTCAATCTTAT+TGG | + | chr5_2:12704066-12704085 | Msa0757740:intron | 20.0% |
| !! | GATATATTACATTGTTAACA+TGG | - | chr5_2:12704282-12704301 | None:intergenic | 20.0% |
| !! | TATAACTTAACTACTGTTAA+AGG | - | chr5_2:12704334-12704353 | None:intergenic | 20.0% |
| !!! | CTAGGAAATAATTTTGATTA+AGG | + | chr5_2:12704473-12704492 | Msa0757740:intron | 20.0% |
| !!! | ATTCATTATTAGTTCTAGTA+TGG | + | chr5_2:12704526-12704545 | Msa0757740:intron | 20.0% |
| !!! | TGATTTTGATAAATTTATGG+AGG | + | chr5_2:12704582-12704601 | Msa0757740:intron | 20.0% |
| !!! | AATTCATATAAAGTCCATTT+TGG | - | chr5_2:12704628-12704647 | None:intergenic | 20.0% |
| !!! | TTTTTTTTTGGTACAAAAGA+GGG | - | chr5_2:12704847-12704866 | None:intergenic | 20.0% |
| !!! | TTTTTTTTTTGGTACAAAAG+AGG | - | chr5_2:12704848-12704867 | None:intergenic | 20.0% |
| !! | GAAAGAATTTAAATTTCATC+TGG | + | chr5_2:12704887-12704906 | Msa0757740:intron | 20.0% |
| !!! | TTCAGTTTTTCAAAAAAGAT+GGG | - | chr5_2:12704922-12704941 | None:intergenic | 20.0% |
| !! | CTAACTATTATTATGTGAAA+AGG | - | chr5_2:12705035-12705054 | None:intergenic | 20.0% |
| !! | TTTCACATAATAATAGTTAG+TGG | + | chr5_2:12705035-12705054 | Msa0757740:intron | 20.0% |
| !! | ATAATTCAATATGTTGTGTA+TGG | + | chr5_2:12706181-12706200 | Msa0757740:intron | 20.0% |
| ! | ATATGAGAGGGAAATATAAT+TGG | + | chr5_2:12703254-12703273 | Msa0757740:intron | 25.0% |
| ! | AATAAAGAGGAATAAGGAAA+AGG | - | chr5_2:12703499-12703518 | None:intergenic | 25.0% |
| ! | CGAAATAATAAAGAGGAATA+AGG | - | chr5_2:12703505-12703524 | None:intergenic | 25.0% |
| !! | GGTATTGTCTAATCAATTTT+CGG | + | chr5_2:12703583-12703602 | Msa0757740:intron | 25.0% |
| !!! | TCTCATTTGAAGTATTGAAT+TGG | + | chr5_2:12703821-12703840 | Msa0757740:intron | 25.0% |
| !!! | AGTAGATGCTTTAAAATTCT+TGG | - | chr5_2:12704030-12704049 | None:intergenic | 25.0% |
| ! | AACAACAACCAATACTAATT+TGG | + | chr5_2:12704126-12704145 | Msa0757740:intron | 25.0% |
| ! | ACAACAACCAATACTAATTT+GGG | + | chr5_2:12704127-12704146 | Msa0757740:intron | 25.0% |
| !! | ATCCTAGTATCTTATTTCTT+TGG | + | chr5_2:12704299-12704318 | Msa0757740:intron | 25.0% |
| !! | GATTAAGGATAATTTTGAAC+TGG | + | chr5_2:12704488-12704507 | Msa0757740:intron | 25.0% |
| ! | TTTAGTGAATGTTTGGATTA+AGG | + | chr5_2:12704552-12704571 | Msa0757740:intron | 25.0% |
| !!! | GTTCAGTTTTTCAAAAAAGA+TGG | - | chr5_2:12704923-12704942 | None:intergenic | 25.0% |
| ! | TGTAATATTGAGATTGACTA+TGG | + | chr5_2:12705402-12705421 | Msa0757740:CDS | 25.0% |
| !! | CAAGAATTTTGTAAGTATCT+CGG | + | chr5_2:12705804-12705823 | Msa0757740:intron | 25.0% |
| ! | TGAGTCTTTATGACAAATTA+TGG | + | chr5_2:12706019-12706038 | Msa0757740:intron | 25.0% |
| ! | GAGTCTTTATGACAAATTAT+GGG | + | chr5_2:12706020-12706039 | Msa0757740:intron | 25.0% |
| !!! | TAGTTTTTTTCTCCAATAAG+GGG | - | chr5_2:12706127-12706146 | None:intergenic | 25.0% |
| !!! | CTAGTTTTTTTCTCCAATAA+GGG | - | chr5_2:12706128-12706147 | None:intergenic | 25.0% |
| ! | CTTTCTTAATTAGTAACAAC+AGG | - | chr5_2:12706398-12706417 | None:intergenic | 25.0% |
| ATCTTCTAGTCTCAGATTTA+CGG | + | chr5_2:12703001-12703020 | Msa0757740:five_prime_UTR | 30.0% | |
| ATCAAACTTCACAACAACAA+AGG | - | chr5_2:12703192-12703211 | None:intergenic | 30.0% | |
| AGGGAAATATAATTGGATGT+AGG | + | chr5_2:12703261-12703280 | Msa0757740:intron | 30.0% | |
| AGTAGAGCGAAATAATAAAG+AGG | - | chr5_2:12703512-12703531 | None:intergenic | 30.0% | |
| AATTCTCTTACTCGGTAAAA+AGG | + | chr5_2:12703562-12703581 | Msa0757740:intron | 30.0% | |
| ! | AATCAATTTTCGGTCTAAAC+TGG | + | chr5_2:12703593-12703612 | Msa0757740:intron | 30.0% |
| TATGTTCTGTTGTATACCTT+TGG | + | chr5_2:12703887-12703906 | Msa0757740:intron | 30.0% | |
| AACAAGTTCAATATCTCCAA+AGG | - | chr5_2:12703906-12703925 | None:intergenic | 30.0% | |
| AGTTATTCATCATCATCTGT+CGG | + | chr5_2:12703974-12703993 | Msa0757740:intron | 30.0% | |
| CTTCAATCTTATTGGATTCT+TGG | + | chr5_2:12704074-12704093 | Msa0757740:intron | 30.0% | |
| CAACAACCAATACTAATTTG+GGG | + | chr5_2:12704128-12704147 | Msa0757740:intron | 30.0% | |
| AACAACCAATACTAATTTGG+GGG | + | chr5_2:12704129-12704148 | Msa0757740:intron | 30.0% | |
| TGCCAAAGAAATAAGATACT+AGG | - | chr5_2:12704304-12704323 | None:intergenic | 30.0% | |
| ! | ATTAGTTTCCACGTTGTTTA+AGG | + | chr5_2:12704436-12704455 | Msa0757740:intron | 30.0% |
| !! | ATGGCTTTTTAGTGAATGTT+TGG | + | chr5_2:12704545-12704564 | Msa0757740:intron | 30.0% |
| ! | ATTTTGTAGATGCTCCAAAA+TGG | + | chr5_2:12704611-12704630 | Msa0757740:intron | 30.0% |
| TTAAGAACTTCAAATAGTGG+TGG | - | chr5_2:12704780-12704799 | None:intergenic | 30.0% | |
| GAGTTAAGAACTTCAAATAG+TGG | - | chr5_2:12704783-12704802 | None:intergenic | 30.0% | |
| CTTCTCTAATGCAAGTAAAA+AGG | - | chr5_2:12704805-12704824 | None:intergenic | 30.0% | |
| AACTCAATCACATTTCAACT+AGG | - | chr5_2:12705151-12705170 | None:intergenic | 30.0% | |
| TAGTTGAAATGTGATTGAGT+TGG | + | chr5_2:12705150-12705169 | Msa0757740:intron | 30.0% | |
| !! | AAATGTGATTGAGTTGGTTT+AGG | + | chr5_2:12705156-12705175 | Msa0757740:intron | 30.0% |
| !! | AATGTGATTGAGTTGGTTTA+GGG | + | chr5_2:12705157-12705176 | Msa0757740:intron | 30.0% |
| AAATTTCCTGATATCTTGAC+TGG | + | chr5_2:12705186-12705205 | Msa0757740:intron | 30.0% | |
| AAGAATAAATGACGTAGTTC+TGG | + | chr5_2:12705352-12705371 | Msa0757740:intron | 30.0% | |
| !!! | TGGAAGATTTTTAAGTTGCA+TGG | + | chr5_2:12705422-12705441 | Msa0757740:CDS | 30.0% |
| !!! | GGAAGATTTTTAAGTTGCAT+GGG | + | chr5_2:12705423-12705442 | Msa0757740:CDS | 30.0% |
| ATCAAAGTTTCCTCTTATCA+TGG | + | chr5_2:12705873-12705892 | Msa0757740:intron | 30.0% | |
| GATACAATGTACATATGCTT+TGG | + | chr5_2:12705914-12705933 | Msa0757740:intron | 30.0% | |
| TGAAAACATCACAAGTCATT+GGG | + | chr5_2:12706078-12706097 | Msa0757740:intron | 30.0% | |
| !!! | AGTTTTTTTCTCCAATAAGG+GGG | - | chr5_2:12706126-12706145 | None:intergenic | 30.0% |
| !!! | CCTAGTTTTTTTCTCCAATA+AGG | - | chr5_2:12706129-12706148 | None:intergenic | 30.0% |
| CCTTATTGGAGAAAAAAACT+AGG | + | chr5_2:12706126-12706145 | Msa0757740:intron | 30.0% | |
| ! | AGTTTAGAGTTCATCATTTC+TGG | + | chr5_2:12706266-12706285 | Msa0757740:CDS | 30.0% |
| CTTAATTAGTAACAACAGGA+TGG | - | chr5_2:12706394-12706413 | None:intergenic | 30.0% | |
| TGTGATCTTCACTTTCGATT+CGG | + | chr5_2:12703032-12703051 | Msa0757740:CDS | 35.0% | |
| TCAACGCAATAATTCAGAAC+TGG | - | chr5_2:12703161-12703180 | None:intergenic | 35.0% | |
| AGGAATAAGGAAAAGGAACA+AGG | - | chr5_2:12703492-12703511 | None:intergenic | 35.0% | |
| GATGAATACGTCTTATGCTA+TGG | - | chr5_2:12703537-12703556 | None:intergenic | 35.0% | |
| ATCGAAGGAATTCTCTTACT+CGG | + | chr5_2:12703554-12703573 | Msa0757740:intron | 35.0% | |
| TGATAGTCGATGCAATAAAC+TGG | + | chr5_2:12703637-12703656 | Msa0757740:intron | 35.0% | |
| CACTCAACTTGATTCAAAAC+TGG | + | chr5_2:12703939-12703958 | Msa0757740:intron | 35.0% | |
| ACTTGATTCAAAACTGGAGA+TGG | + | chr5_2:12703945-12703964 | Msa0757740:intron | 35.0% | |
| TATTGGATTCTTGGATTTGC+TGG | + | chr5_2:12704083-12704102 | Msa0757740:intron | 35.0% | |
| !! | TCTTCACCTTGATAATGAAG+AGG | - | chr5_2:12704241-12704260 | None:intergenic | 35.0% |
| TACATTGTTAACATGGGCAA+AGG | - | chr5_2:12704275-12704294 | None:intergenic | 35.0% | |
| TTGTTTCCTAGTTTCCACAA+TGG | + | chr5_2:12704367-12704386 | Msa0757740:intron | 35.0% | |
| ! | TGCATTAGAGAAGAGCTTTT+TGG | + | chr5_2:12704812-12704831 | Msa0757740:intron | 35.0% |
| ! | GCATTAGAGAAGAGCTTTTT+GGG | + | chr5_2:12704813-12704832 | Msa0757740:intron | 35.0% |
| ! | CATTAGAGAAGAGCTTTTTG+GGG | + | chr5_2:12704814-12704833 | Msa0757740:intron | 35.0% |
| ! | CTGAACTTTTACAAAAGCTC+CGG | + | chr5_2:12704937-12704956 | Msa0757740:intron | 35.0% |
| ! | TGAACTTTTACAAAAGCTCC+GGG | + | chr5_2:12704938-12704957 | Msa0757740:intron | 35.0% |
| AAACTGATGCAACTTTGTTC+AGG | + | chr5_2:12705097-12705116 | Msa0757740:intron | 35.0% | |
| !! | ATGTGATTGAGTTGGTTTAG+GGG | + | chr5_2:12705158-12705177 | Msa0757740:intron | 35.0% |
| ATCAAACCAGTCAAGATATC+AGG | - | chr5_2:12705195-12705214 | None:intergenic | 35.0% | |
| CACTCAGAGTTATATCCTAT+TGG | + | chr5_2:12705271-12705290 | Msa0757740:intron | 35.0% | |
| ATCCTATTGGAATCTTTGAG+AGG | + | chr5_2:12705284-12705303 | Msa0757740:intron | 35.0% | |
| TATGCTCTTGATTGCAAATC+AGG | - | chr5_2:12705327-12705346 | None:intergenic | 35.0% | |
| ! | GATTTGCAATCAAGAGCATA+TGG | + | chr5_2:12705327-12705346 | Msa0757740:intron | 35.0% |
| !!! | AGATTTTTAAGTTGCATGGG+AGG | + | chr5_2:12705426-12705445 | Msa0757740:CDS | 35.0% |
| CTGATCTCACAATCAGTTAT+TGG | - | chr5_2:12705495-12705514 | None:intergenic | 35.0% | |
| GACATCCATTCTTTCCATTT+CGG | + | chr5_2:12705707-12705726 | Msa0757740:intron | 35.0% | |
| GAAAACCGAAATGGAAAGAA+TGG | - | chr5_2:12705715-12705734 | None:intergenic | 35.0% | |
| TTACCATAAGTCCTGCTTTA+GGG | + | chr5_2:12705753-12705772 | Msa0757740:intron | 35.0% | |
| ! | AATTTTGTAAGTATCTCGGC+AGG | + | chr5_2:12705808-12705827 | Msa0757740:intron | 35.0% |
| AAATGCATGTCCATGATAAG+AGG | - | chr5_2:12705886-12705905 | None:intergenic | 35.0% | |
| GCTGTTCTCATTTATCAGAA+AGG | + | chr5_2:12705953-12705972 | Msa0757740:intron | 35.0% | |
| GTGAAAACATCACAAGTCAT+TGG | + | chr5_2:12706077-12706096 | Msa0757740:intron | 35.0% | |
| ! | ACAACAGGATGGAATGTTTT+GGG | - | chr5_2:12706383-12706402 | None:intergenic | 35.0% |
| ! | AACAACAGGATGGAATGTTT+TGG | - | chr5_2:12706384-12706403 | None:intergenic | 35.0% |
| ! | TATCTTTTGCTTGATGCTAG+TGG | + | chr5_2:12706434-12706453 | Msa0757740:intron | 35.0% |
| TTCTAGTCTCAGATTTACGG+TGG | + | chr5_2:12703004-12703023 | Msa0757740:five_prime_UTR | 40.0% | |
| !! | TTCACTTTCGATTCGGTATC+TGG | + | chr5_2:12703039-12703058 | Msa0757740:CDS | 40.0% |
| ACATGTTCCGTCAGAAATCA+AGG | + | chr5_2:12703080-12703099 | Msa0757740:CDS | 40.0% | |
| TGGATGTAGGATGTATCTTC+AGG | + | chr5_2:12703274-12703293 | Msa0757740:intron | 40.0% | |
| !! | TTTTTGAGAGAGATCGCACA+GGG | + | chr5_2:12703426-12703445 | Msa0757740:intron | 40.0% |
| TAAGGAAAAGGAACAAGGCA+AGG | - | chr5_2:12703487-12703506 | None:intergenic | 40.0% | |
| GCATAAGACGTATTCATCGA+AGG | + | chr5_2:12703539-12703558 | Msa0757740:intron | 40.0% | |
| TTATGGCAGTAATTGCGTCA+TGG | + | chr5_2:12703714-12703733 | Msa0757740:intron | 40.0% | |
| CACAACCCCCAAATTAGTAT+TGG | - | chr5_2:12704137-12704156 | None:intergenic | 40.0% | |
| CAATACTAATTTGGGGGTTG+TGG | + | chr5_2:12704135-12704154 | Msa0757740:intron | 40.0% | |
| ! | ATGAAGAGGAAGAGCATGAA+CGG | - | chr5_2:12704227-12704246 | None:intergenic | 40.0% |
| GCTCTTCCTCTTCATTATCA+AGG | + | chr5_2:12704232-12704251 | Msa0757740:intron | 40.0% | |
| ACTGAACCATTGTGGAAACT+AGG | - | chr5_2:12704376-12704395 | None:intergenic | 40.0% | |
| AATGCACTACTGAACCATTG+TGG | - | chr5_2:12704384-12704403 | None:intergenic | 40.0% | |
| AGTACAGCTTGAGATAGTCA+CGG | - | chr5_2:12704660-12704679 | None:intergenic | 40.0% | |
| AAAATTATCCGTTCAGCACC+CGG | - | chr5_2:12704959-12704978 | None:intergenic | 40.0% | |
| GGCATCAACAGAATGATGAT+TGG | - | chr5_2:12705067-12705086 | None:intergenic | 40.0% | |
| ATCATTCTGTTGATGCCTCA+AGG | + | chr5_2:12705070-12705089 | Msa0757740:intron | 40.0% | |
| ! | TGCATCAGTTTATAGCCTTG+AGG | - | chr5_2:12705088-12705107 | None:intergenic | 40.0% |
| ACAGATCTTTCATGGAGATG+AGG | - | chr5_2:12705234-12705253 | None:intergenic | 40.0% | |
| GTTGAGCTACAGATCTTTCA+TGG | - | chr5_2:12705242-12705261 | None:intergenic | 40.0% | |
| GAAAGATCTGTAGCTCAACT+CGG | + | chr5_2:12705243-12705262 | Msa0757740:intron | 40.0% | |
| CTCTTGATTGCAAATCAGGA+TGG | - | chr5_2:12705323-12705342 | None:intergenic | 40.0% | |
| CACAATCAGTTATTGGCAGA+TGG | - | chr5_2:12705488-12705507 | None:intergenic | 40.0% | |
| CTAGAAGTGGAAAACCGAAA+TGG | - | chr5_2:12705724-12705743 | None:intergenic | 40.0% | |
| GTAAGGACTATTGCTAGAAG+TGG | - | chr5_2:12705737-12705756 | None:intergenic | 40.0% | |
| CTAAAGCAGGACTTATGGTA+AGG | - | chr5_2:12705754-12705773 | None:intergenic | 40.0% | |
| CTTACCATAAGTCCTGCTTT+AGG | + | chr5_2:12705752-12705771 | Msa0757740:intron | 40.0% | |
| TCTTGCAAACATCGCATCTT+TGG | - | chr5_2:12705789-12705808 | None:intergenic | 40.0% | |
| ! | ATGCTCATTTTCCCCCTTAT+TGG | + | chr5_2:12706112-12706131 | Msa0757740:intron | 40.0% |
| AAGATCCCTGTTAATTCAGC+TGG | + | chr5_2:12706235-12706254 | Msa0757740:intron | 40.0% | |
| TGAAGCCAGCTGAATTAACA+GGG | - | chr5_2:12706243-12706262 | None:intergenic | 40.0% | |
| ATGAAGCCAGCTGAATTAAC+AGG | - | chr5_2:12706244-12706263 | None:intergenic | 40.0% | |
| ATGTTGTAGCTGCGAAAGAA+TGG | + | chr5_2:12706333-12706352 | Msa0757740:CDS | 40.0% | |
| !! | AACAGGATGGAATGTTTTGG+GGG | - | chr5_2:12706381-12706400 | None:intergenic | 40.0% |
| ! | CAACAGGATGGAATGTTTTG+GGG | - | chr5_2:12706382-12706401 | None:intergenic | 40.0% |
| CTAGACTCAGCAATTATGGA+CGG | + | chr5_2:12706476-12706495 | Msa0757740:CDS | 40.0% | |
| GTATTTCAAGGTAGAGAGGT+TGG | - | chr5_2:12706511-12706530 | None:intergenic | 40.0% | |
| AGTCTCAGATTTACGGTGGA+TGG | + | chr5_2:12703008-12703027 | Msa0757740:exon | 45.0% | |
| GTCTCAGATTTACGGTGGAT+GGG | + | chr5_2:12703009-12703028 | Msa0757740:exon | 45.0% | |
| TGTTCCGTCAGAAATCAAGG+CGG | + | chr5_2:12703083-12703102 | Msa0757740:CDS | 45.0% | |
| !! | GTTTTTGAGAGAGATCGCAC+AGG | + | chr5_2:12703425-12703444 | Msa0757740:intron | 45.0% |
| CGTCGTTTCCTTAAACAACG+TGG | - | chr5_2:12704447-12704466 | None:intergenic | 45.0% | |
| CGTTGTTTAAGGAAACGACG+TGG | + | chr5_2:12704447-12704466 | Msa0757740:intron | 45.0% | |
| AAGGAAACGACGTGGAAACT+AGG | + | chr5_2:12704455-12704474 | Msa0757740:intron | 45.0% | |
| ACACGGATATGCTGAAGTAG+TGG | + | chr5_2:12704697-12704716 | Msa0757740:intron | 45.0% | |
| TTGGTACAAAAGAGGGCCAA+AGG | - | chr5_2:12704840-12704859 | None:intergenic | 45.0% | |
| CGCCTCTCAAAGATTCCAAT+AGG | - | chr5_2:12705289-12705308 | None:intergenic | 45.0% | |
| ! | TTGGAATCTTTGAGAGGCGA+TGG | + | chr5_2:12705290-12705309 | Msa0757740:intron | 45.0% |
| !! | TAAGTTGCATGGGAGGTGTT+TGG | + | chr5_2:12705433-12705452 | Msa0757740:CDS | 45.0% |
| TCTCCCTAAAGCAGGACTTA+TGG | - | chr5_2:12705759-12705778 | None:intergenic | 45.0% | |
| TTGTAGCTGCGAAAGAATGG+AGG | + | chr5_2:12706336-12706355 | Msa0757740:CDS | 45.0% | |
| GTGCCTAGACTCAGCAATTA+TGG | + | chr5_2:12706472-12706491 | Msa0757740:CDS | 45.0% | |
| CGTCCATAATTGCTGAGTCT+AGG | - | chr5_2:12706478-12706497 | None:intergenic | 45.0% | |
| !! | AATAATAAAAAAACAATTAT+TGG | + | chr5_2:12703403-12703422 | Msa0757740:intron | 5.0% |
| TCGACCGCCTTGATTTCTGA+CGG | - | chr5_2:12703090-12703109 | None:intergenic | 50.0% | |
| !!! | CGGTCGAGGTGATTTTTTGC+AGG | + | chr5_2:12703103-12703122 | Msa0757740:intron | 50.0% |
| TCAACACGCTCAGCGCATTA+AGG | - | chr5_2:12703309-12703328 | None:intergenic | 50.0% | |
| TTAATGCGCTGAGCGTGTTG+AGG | + | chr5_2:12703308-12703327 | Msa0757740:intron | 50.0% | |
| ! | GATCGCACAGGGTTTTTACC+CGG | + | chr5_2:12703437-12703456 | Msa0757740:intron | 50.0% |
| ! | ATCGCACAGGGTTTTTACCC+GGG | + | chr5_2:12703438-12703457 | Msa0757740:intron | 50.0% |
| !!! | GAAGAGCTTTTTGGGGCCTT+TGG | + | chr5_2:12704821-12704840 | Msa0757740:intron | 50.0% |
| GTGATGCTTCTCCCTAAAGC+AGG | - | chr5_2:12705767-12705786 | None:intergenic | 50.0% | |
| CTTTCGCAGCTACAACATCG+AGG | - | chr5_2:12706331-12706350 | None:intergenic | 50.0% | |
| GTCAGAAATCAAGGCGGTCG+AGG | + | chr5_2:12703089-12703108 | Msa0757740:CDS | 55.0% | |
| CATCCGACCTTTGCCATGTC+AGG | + | chr5_2:12703355-12703374 | Msa0757740:intron | 55.0% | |
| GCACCTGACATGGCAAAGGT+CGG | - | chr5_2:12703361-12703380 | None:intergenic | 55.0% | |
| AAGCGCACCTGACATGGCAA+AGG | - | chr5_2:12703365-12703384 | None:intergenic | 55.0% | |
| !! | CAAAAGCTCCGGGTGCTGAA+CGG | + | chr5_2:12704948-12704967 | Msa0757740:intron | 55.0% |
| CCAAGCAAGCGCACCTGACA+TGG | - | chr5_2:12703371-12703390 | None:intergenic | 60.0% | |
| CCATGTCAGGTGCGCTTGCT+TGG | + | chr5_2:12703368-12703387 | Msa0757740:intron | 60.0% | |
| CACGCACGAGAGAAGATCCC+GGG | - | chr5_2:12703458-12703477 | None:intergenic | 60.0% | |
| CCACGCACGAGAGAAGATCC+CGG | - | chr5_2:12703459-12703478 | None:intergenic | 60.0% | |
| GTCAGGTGCGCTTGCTTGGC+AGG | + | chr5_2:12703372-12703391 | Msa0757740:intron | 65.0% | |
| CCGGGATCTTCTCTCGTGCG+TGG | + | chr5_2:12703456-12703475 | Msa0757740:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 12702995 | 12706532 | 12702995 | ID=Msa0757740;Name=Msa0757740 |
| chr5_2 | mRNA | 12702995 | 12706532 | 12702995 | ID=Msa0757740-mRNA-1;Parent=Msa0757740;Name=Msa0757740-mRNA-1;_AED=0.40;_eAED=0.62;_QI=32|0|0|0.75|0|0.25|4|0|142 |
| chr5_2 | exon | 12702995 | 12703110 | 12702995 | ID=Msa0757740-mRNA-1:exon:5721;Parent=Msa0757740-mRNA-1 |
| chr5_2 | exon | 12705390 | 12705532 | 12705390 | ID=Msa0757740-mRNA-1:exon:5722;Parent=Msa0757740-mRNA-1 |
| chr5_2 | exon | 12706238 | 12706357 | 12706238 | ID=Msa0757740-mRNA-1:exon:5723;Parent=Msa0757740-mRNA-1 |
| chr5_2 | exon | 12706454 | 12706532 | 12706454 | ID=Msa0757740-mRNA-1:exon:5724;Parent=Msa0757740-mRNA-1 |
| chr5_2 | five_prime_UTR | 12702995 | 12703026 | 12702995 | ID=Msa0757740-mRNA-1:five_prime_utr;Parent=Msa0757740-mRNA-1 |
| chr5_2 | CDS | 12703027 | 12703110 | 12703027 | ID=Msa0757740-mRNA-1:cds;Parent=Msa0757740-mRNA-1 |
| chr5_2 | CDS | 12705390 | 12705532 | 12705390 | ID=Msa0757740-mRNA-1:cds;Parent=Msa0757740-mRNA-1 |
| chr5_2 | CDS | 12706238 | 12706357 | 12706238 | ID=Msa0757740-mRNA-1:cds;Parent=Msa0757740-mRNA-1 |
| chr5_2 | CDS | 12706454 | 12706532 | 12706454 | ID=Msa0757740-mRNA-1:cds;Parent=Msa0757740-mRNA-1 |
| Gene Sequence |
| Protein sequence |
