AlfalfaGEDB | Msa0759310

M. sativa cultivar zhongmu-4 / Msa0759310

KEGG: K08852
GO: GO:0001101 GO:0002376 GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004540 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005789 GO:0005975 GO:0006020 GO:0006066 GO:0006139 GO:0006396 GO:0006464 GO:0006468 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0006986 GO:0007154 GO:0007165 GO:0008104 GO:0008150 GO:0008152 GO:0008380 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009725 GO:0009751 GO:0009814 GO:0009816 GO:0009987 GO:0010033 GO:0010467 GO:0012505 GO:0014070 GO:0016020 GO:0016021 GO:0016043 GO:0016070 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0016787 GO:0016788 GO:0019538 GO:0019751 GO:0019898 GO:0022607 GO:0023052 GO:0030176 GO:0030968 GO:0031090 GO:0031224 GO:0031227 GO:0031312 GO:0031505 GO:0031984 GO:0033036 GO:0033365 GO:0033554 GO:0034067 GO:0034613 GO:0034620 GO:0034641 GO:0034976 GO:0035966 GO:0035967 GO:0036211 GO:0036290 GO:0042175 GO:0042221 GO:0042406 GO:0042493 GO:0042742 GO:0042802 GO:0042803 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044262 GO:0044267 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0045229 GO:0046483 GO:0046677 GO:0046777 GO:0046983 GO:0050789 GO:0050794 GO:0050896 GO:0051082 GO:0051179 GO:0051259 GO:0051260 GO:0051641 GO:0051704 GO:0051707 GO:0051716 GO:0065003 GO:0065007 GO:0070727 GO:0070887 GO:0071310 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0071852 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0098542 GO:0098827 GO:0140096 GO:0140098 GO:1901360 GO:1901564 GO:1901615 GO:1901700
PFAM: PF01011.24

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0759310	sp\|Q9C5S2\|IRE1A_ARATH	68.539	445	127	3	469	902	395	837	0.0	639

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0759310	G7K1A9	98.011	905	17	1	1	905	1	904	0.0	1827

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0718150	Msa0759310	0.864186	1.456861e-64	-8.615850e-47

Showing 1 to 1 of 1 entries

Previous1Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0759310	MtrunA17_Chr5g0407261	98.011	905	17	1	1	905	1	904	0.0	1827
Msa0759310	MtrunA17_Chr8g0370241	57.714	901	275	18	31	901	20	844	0.0	959
Msa0759310	MtrunA17_Chr8g0369971	40.443	722	286	24	49	757	25	615	1.27e-143	439
Msa0759310	MtrunA17_Chr6g0477411	85.714	56	2	1	412	467	1	50	6.20e-22	91.7
Msa0759310	MtrunA17_Chr6g0477411	72.917	48	9	1	632	675	42	89	2.69e-13	67.0
Msa0759310	MtrunA17_Chr7g0272841	27.715	267	148	8	507	768	104	330	9.01e-19	91.7
Msa0759310	MtrunA17_Chr1g0205931	26.316	266	151	8	508	768	92	317	4.60e-18	89.4
Msa0759310	MtrunA17_Chr4g0033521	27.089	347	213	17	489	804	428	765	6.01e-17	86.3
Msa0759310	MtrunA17_Chr8g0384301	29.213	267	140	11	522	783	347	569	1.38e-16	84.7
Msa0759310	MtrunA17_Chr8g0346071	27.961	304	161	13	478	769	13	270	1.91e-16	82.8

Showing 1 to 10 of 81 entries

Previous1 2 3 4 5…9Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0759310	AT2G17520.1	68.539	445	127	3	469	902	395	837	0.0	639
Msa0759310	AT5G24360.1	44.972	885	390	26	61	900	43	875	0.0	634
Msa0759310	AT5G24360.2	44.683	884	392	25	62	900	50	881	0.0	632
Msa0759310	AT5G24360.3	44.824	879	388	25	67	900	35	861	0.0	631
Msa0759310	AT3G11870.1	43.016	451	211	14	481	901	119	553	8.10e-97	315
Msa0759310	AT3G06030.1	28.571	266	146	8	507	768	104	329	1.07e-21	101
Msa0759310	AT1G54960.1	25.405	370	194	15	489	842	74	377	7.93e-19	92.0
Msa0759310	AT1G54960.2	25.405	370	194	15	489	842	74	377	7.93e-19	92.0
Msa0759310	AT1G09000.2	27.027	296	160	10	489	768	75	330	1.39e-18	91.3
Msa0759310	AT1G09000.1	27.027	296	160	10	489	768	75	330	2.29e-18	90.5

Showing 1 to 10 of 121 entries

Previous1 2 3 4 5…13Next

Find 232 sgRNAs with CRISPR-Local

Find 470 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCTGTTACGGCACTGG+TGG	0.625351	5_2:-14893991	Msa0759310:CDS
AAAATCACCTATGATAGTAA+TGG	0.555445	5_2:-14892232	Msa0759310:CDS
AAAGATGGAGCTGTTATACT+TGG	0.504620	5_2:-14892886	Msa0759310:CDS
AACAGCAACATAATCAGCAA+CGG	0.639691	5_2:+14892924	None:intergenic
AACTTTAGTAAAAGTGGAGA+TGG	0.524497	5_2:+14891500	None:intergenic
AAGACATAATTCGTGGGTTT+TGG	0.278262	5_2:+14894232	None:intergenic
AAGAGAGAGTTGTTGGGATT+GGG	0.331180	5_2:+14894091	None:intergenic
AAGAGTGATAGATTTCTCCA+TGG	0.657204	5_2:-14892307	Msa0759310:CDS
AAGGAGCACTGTATTTGAAG+TGG	0.567852	5_2:-14892857	Msa0759310:CDS
AAGGGAAGTTGATCTGAGCA+GGG	0.657506	5_2:-14892164	Msa0759310:CDS

Showing 1 to 10 of 232 entries

Previous1 2 3 4 5…24Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
GATGAAGAAGAAGATTGAAA+CGG	+	chr5_2:14888014-14888033	None:intergenic	30.0%
TCCAATGAATTCGAAACTAA+CGG	+	chr5_2:14888163-14888182	None:intergenic	30.0%
TAGCTACTAATTGTAGTTTC+AGG	-	chr5_2:14888597-14888616	Msa0759310:intron	30.0%
CAAAATAAAATCAAACCGTC+GGG	-	chr5_2:14888837-14888856	Msa0759310:CDS	30.0%
AAAATAAAATCAAACCGTCG+GGG	-	chr5_2:14888838-14888857	Msa0759310:CDS	30.0%
AGACATCAAAATTATCTTGG+AGG	+	chr5_2:14889159-14889178	None:intergenic	30.0%
GACAGACATCAAAATTATCT+TGG	+	chr5_2:14889162-14889181	None:intergenic	30.0%
AATAATCAGTCCTAACTATC+TGG	+	chr5_2:14889518-14889537	None:intergenic	30.0%
CAAACAGAAAATTCTTTCGT+TGG	+	chr5_2:14889752-14889771	None:intergenic	30.0%
TGCATTACCATTACTATCAT+AGG	+	chr5_2:14889955-14889974	None:intergenic	30.0%

Showing 1 to 10 of 470 entries

Previous1 2 3 4 5…47Next

Chromosome	Type	Strat	End	Strand	Name
chr5_2	gene	14887822	14894377	14887822	ID=Msa0759310;Name=Msa0759310
chr5_2	mRNA	14887822	14894377	14887822	ID=Msa0759310-mRNA-1;Parent=Msa0759310;Name=Msa0759310-mRNA-1;_AED=0.06;_eAED=0.06;_QI=179\|1\|1\|1\|1\|1\|6\|345\|905
chr5_2	exon	14887822	14888310	14887822	ID=Msa0759310-mRNA-1:exon:6789;Parent=Msa0759310-mRNA-1
chr5_2	exon	14888625	14888928	14888625	ID=Msa0759310-mRNA-1:exon:6788;Parent=Msa0759310-mRNA-1
chr5_2	exon	14889933	14890179	14889933	ID=Msa0759310-mRNA-1:exon:6787;Parent=Msa0759310-mRNA-1
chr5_2	exon	14890529	14890701	14890529	ID=Msa0759310-mRNA-1:exon:6786;Parent=Msa0759310-mRNA-1
chr5_2	exon	14891494	14892959	14891494	ID=Msa0759310-mRNA-1:exon:6785;Parent=Msa0759310-mRNA-1
chr5_2	exon	14893815	14894377	14893815	ID=Msa0759310-mRNA-1:exon:6784;Parent=Msa0759310-mRNA-1
chr5_2	five_prime_UTR	14894199	14894377	14894199	ID=Msa0759310-mRNA-1:five_prime_utr;Parent=Msa0759310-mRNA-1
chr5_2	CDS	14893815	14894198	14893815	ID=Msa0759310-mRNA-1:cds;Parent=Msa0759310-mRNA-1
chr5_2	CDS	14891494	14892959	14891494	ID=Msa0759310-mRNA-1:cds;Parent=Msa0759310-mRNA-1
chr5_2	CDS	14890529	14890701	14890529	ID=Msa0759310-mRNA-1:cds;Parent=Msa0759310-mRNA-1
chr5_2	CDS	14889933	14890179	14889933	ID=Msa0759310-mRNA-1:cds;Parent=Msa0759310-mRNA-1
chr5_2	CDS	14888625	14888928	14888625	ID=Msa0759310-mRNA-1:cds;Parent=Msa0759310-mRNA-1
chr5_2	CDS	14888167	14888310	14888167	ID=Msa0759310-mRNA-1:cds;Parent=Msa0759310-mRNA-1
chr5_2	three_prime_UTR	14887822	14888166	14887822	ID=Msa0759310-mRNA-1:three_prime_utr;Parent=Msa0759310-mRNA-1

Gene Sequence

>Msa0759310

ATGAATCATTCCGTTTCAATCTTCTTCTTCATCTTCTTCATCACAATCTTCACCTGCATCGTTGCAGATGTATCCATCCCCACCTCCCAATCCCAACAACTCTCTCTTCTCCACAACGGTTTCTCTCCCTCTCCTCCCGCTCTTCCACCGCCATCGTCGCCGTTAGTTTCGAATTCATTGGACAGAAAACCTGTTACGGCACTGGTGGCTGGTTTAGACGGAACTATTTATCTTGTTGAAAGTGCTTCTGGGAGGGTAATTTGGTCTTTTTCATCTGGTTCACCGATCTACCATTCCTCTGCCAATACTCCTCCGTCTTCTGGTCTTATTGAATGTGGTGATGACTGGGAATTAATCTTTCATGATCCCCACTTTGGTAAAACGAGACTCAAGGAATCCGTTGCTGATTATGTTGCTGTTACGCCTATTGTGTCGAAAGATGGAGCTGTTATACTTGGATCCAAAAGGAGCACTGTATTTGAAGTGGATGCTAAAACAGGAAAGCTCCTTAGAAGCTATGGTGCTGCTGATTTTCGTAATGTTTCTACTACTGCAATGTGGAGTGGTGACAAGGACAGTGAGGGTGTTACTAACGACTTCCGTGCAAATAATAAGGAGCTTGCTGATCCAGCAAAGCTTAATTTACCAGAGTTTTTGCTCCAGATAGTTAGGACTGATTATTTTTTACAATCTGTGGGTCCTGGTTCAGGAATAGTGTTATGGACTATGTCAGTAGCTGAATTTGAGGCTGTATTATTTTGCCAACATAATGAAAATCCTACCTTGACAGCTTCACTTGATGCAGAAGGTGAGTATGCTTATGATGTTGACAGTGGCTTGGATTTTGCTATGCCGTATGCGTGTCCTGACAGAAAACTCAGAGAAGTCTATCGCCAACGAAAGAATTTTCTGTTTGAACCTGATAAAATTCAAAGATTATCTGATGTTGATGCTTATCAAGAGAAAGGTATGCTCCCAATGCCCGATTTAAAGCTGATGCTTCCATCACAACCTAAGAGTGATAGATTTCTCCATGGTCATGGTGGTAATATGATGCTACCTGTGCCTGTGCCAAATTATATGCAGCCGAAAATCACCTATGATAGTAATGGTAATGCAGTTATGCTTCCGCAGCCTCCCATGGAGATCACTGCACCAAGGGAAGTTGATCTGAGCAGGGTGATTGAATTGTCAATGTCATTATTGGTTGTATTATCTGTGGTCTTTCTTTTGATATTGTACCAAAATCGGTTAAAAAATAATGTTACATCGAAGGTCCAAATCAGTGACTCAGATTTGAAAAGTTCGCCTTCTAAAAAAAAGAGAGTACGTAAGTCAGGAAAAAACAACATCATTGTTGAGGAGAATATACGAATTCATAAGGAAGCAGAAAATGAGGCACGGTTGCACTATAATAATGTTAATGGACGCAGGATCGGTAAACTGTGTGTATTAAATAAAGAAATCGCAAAGGGAAGTAATGGCACCATTGTCCTTGAAGGGATATATGAAGGTCGGACAGTTGCTGTCAAACGTCTTGTTCAGGCTCATCATGATGTAGCTCATAAAGAAATCCAAAACCTCATTGCTTCTGACTTTCATCCAAATATTGTTCGATGGTATGGTGTGGAATATGATCACGATTTTGTTTACCTTGCTCTGGAGCGTTGTGCATGCAACTTGGATGATCTGATTACTTTTTATTCAGATTTGTCAGAAAACTCTGTTTTAAGTAAGGATCAAGCTTTTGATATTTTTAAGAAGGCCCAAATAGAGGCACAGAAGGATGATATGCAATGTCTTTGGAAATCGAATGGTTATCCATCTCCACTTTTACTAAAGTTGATGAGGGATGTGGTTTCTGGGCTTGTCCATTTGCATGAACTAGGAATAATACACCGGGATTTGAAACCCCAAAATGTTTTGTTAATCAAGGAAAGGTCATTATGTGCCAAACTTTCTGATATGGGGATTAGTAAACGACTTCTTGAAGACATGTCTTCTTTAGGCCATAGTTCTACCGGCTGTGGCAGTTCGGGTTGGCAAGCGCCAGAGCAGCTTCTTCAGGGACGCCAAACACGGGCTGTAGATTTGTTTAGTTTAGGTTGTGTCCTCTTTTTCTGTATGACAGCAGGAAGACATCCATTTGGAGAGCGTCTTGAGCGTGATGTCAACATTGTTAAAAATAAAAAAGATCTTTTCTTAGTAGAGTTTCTTCCTGAAGCAGAGGATCTAATTTCTTGTTTATTAAACCCTGACCCCAATCTAAGGCCAAAGGCGATTGAAGTATTGCATCATCCTCTATTTTGGAGTTCTGAGATGAGACTTTCATTTCTTCGCGACGTTAGTGACAGAGTGGAACTTGAAGATAGAGAGACTAATTCTGTTCTTTTGAATGTATTAGAGAGCACTGCTCCACTGGCTTTAGGTGCAAAATGGGACGAAAAGATGGAACCAGCTTTCATTGCCAACATTGGTCGTTACAGGCGATATAAATTTGACAGCGTCCGAGACTTGTTGAGGGTCATGAGAAACAAGCTAAATCATTTTAGGGAATTGCCTCCAGAAATTCAGGAACTGATAGGACCTGTTCCGGAAGGATTCAATGACTACTTTGCAAGTCGATTTCCTAGGCTCTTGATTGAAGTGTACAAAGTTATCTGCAACTACTGCAAGGATGATGAATGTTTTCAAAGATATTTTAGAGACATTGATTAA

Protein sequence

>Msa0759310

MNHSVSIFFFIFFITIFTCIVADVSIPTSQSQQLSLLHNGFSPSPPALPPPSSPLVSNSLDRKPVTALVAGLDGTIYLVESASGRVIWSFSSGSPIYHSSANTPPSSGLIECGDDWELIFHDPHFGKTRLKESVADYVAVTPIVSKDGAVILGSKRSTVFEVDAKTGKLLRSYGAADFRNVSTTAMWSGDKDSEGVTNDFRANNKELADPAKLNLPEFLLQIVRTDYFLQSVGPGSGIVLWTMSVAEFEAVLFCQHNENPTLTASLDAEGEYAYDVDSGLDFAMPYACPDRKLREVYRQRKNFLFEPDKIQRLSDVDAYQEKGMLPMPDLKLMLPSQPKSDRFLHGHGGNMMLPVPVPNYMQPKITYDSNGNAVMLPQPPMEITAPREVDLSRVIELSMSLLVVLSVVFLLILYQNRLKNNVTSKVQISDSDLKSSPSKKKRVRKSGKNNIIVEENIRIHKEAENEARLHYNNVNGRRIGKLCVLNKEIAKGSNGTIVLEGIYEGRTVAVKRLVQAHHDVAHKEIQNLIASDFHPNIVRWYGVEYDHDFVYLALERCACNLDDLITFYSDLSENSVLSKDQAFDIFKKAQIEAQKDDMQCLWKSNGYPSPLLLKLMRDVVSGLVHLHELGIIHRDLKPQNVLLIKERSLCAKLSDMGISKRLLEDMSSLGHSSTGCGSSGWQAPEQLLQGRQTRAVDLFSLGCVLFFCMTAGRHPFGERLERDVNIVKNKKDLFLVEFLPEAEDLISCLLNPDPNLRPKAIEVLHHPLFWSSEMRLSFLRDVSDRVELEDRETNSVLLNVLESTAPLALGAKWDEKMEPAFIANIGRYRRYKFDSVRDLLRVMRNKLNHFRELPPEIQELIGPVPEGFNDYFASRFPRLLIEVYKVICNYCKDDECFQRYFRDID*